BLASTX nr result
ID: Akebia23_contig00062482
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Akebia23_contig00062482
(324 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC28197.1| contains similarity to reverse transcriptases [Ar... 61 1e-07
ref|XP_004310201.1| PREDICTED: uncharacterized protein LOC101298... 61 1e-07
gb|AAD15377.1| putative non-LTR retroelement reverse transcripta... 60 2e-07
emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulga... 60 4e-07
gb|AAG51754.1|AC068667_33 reverse transcriptase, putative; 10003... 59 5e-07
emb|CCA66020.1| hypothetical protein [Beta vulgaris subsp. vulga... 59 7e-07
ref|XP_006485449.1| PREDICTED: uncharacterized protein LOC102621... 57 8e-07
pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW1... 59 9e-07
ref|XP_006491472.1| PREDICTED: uncharacterized protein LOC102626... 58 2e-06
gb|AAB48344.1| reverse transcriptase, partial [Arabidopsis thali... 55 2e-06
pir||S65818 RNA-directed DNA polymerase (EC 2.7.7.49) (clone N7)... 55 2e-06
gb|AAD40135.1|AF149413_16 contains similarity to retrotransposon... 57 4e-06
emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulga... 56 6e-06
gb|AAX95129.1| retrotransposon protein, putative, unclassified [... 55 8e-06
gb|EEE51789.1| hypothetical protein OsJ_33245 [Oryza sativa Japo... 55 8e-06
gb|ABA91837.2| retrotransposon protein, putative, unclassified [... 55 8e-06
>gb|AAC28197.1| contains similarity to reverse transcriptases [Arabidopsis
thaliana] gi|7267156|emb|CAB77868.1| putative reverse
transcriptase [Arabidopsis thaliana]
Length = 1077
Score = 61.2 bits (147), Expect = 1e-07
Identities = 33/63 (52%), Positives = 42/63 (66%), Gaps = 3/63 (4%)
Frame = -3
Query: 310 KKNSHHRDLRPCKVTYKIIAKILANRLQPILKKIISPNQCAFIPRR---HNTQIIHEAIN 140
+K S +R + C V YKIIAK+LA RLQPIL IS NQ AF+P+R N I HEA++
Sbjct: 475 QKVSDYRPIALCSVYYKIIAKLLAKRLQPILHSCISENQSAFVPQRAISDNVLITHEALH 534
Query: 139 SMK 131
+K
Sbjct: 535 YLK 537
>ref|XP_004310201.1| PREDICTED: uncharacterized protein LOC101298860 [Fragaria vesca
subsp. vesca]
Length = 1164
Score = 61.2 bits (147), Expect = 1e-07
Identities = 30/52 (57%), Positives = 37/52 (71%), Gaps = 3/52 (5%)
Frame = -3
Query: 316 KEKKNSHHRDLRP---CKVTYKIIAKILANRLQPILKKIISPNQCAFIPRRH 170
K K H LRP C V YK+ +K+LANRL+PILK +I+PNQ AF+PRRH
Sbjct: 454 KVKVVEHITQLRPISLCNVLYKLGSKVLANRLKPILKSVIAPNQSAFVPRRH 505
>gb|AAD15377.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1044
Score = 60.5 bits (145), Expect = 2e-07
Identities = 31/63 (49%), Positives = 44/63 (69%), Gaps = 3/63 (4%)
Frame = -3
Query: 310 KKNSHHRDLRPCKVTYKIIAKILANRLQPILKKIISPNQCAFIPRR---HNTQIIHEAIN 140
K+ +R + C V YKII+K+L+ RLQPIL++IIS NQ AF+P+R N I HEA++
Sbjct: 325 KRMVDYRPIALCTVFYKIISKLLSRRLQPILQEIISENQSAFVPKRASNDNVLITHEALH 384
Query: 139 SMK 131
+K
Sbjct: 385 YLK 387
>emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1378
Score = 59.7 bits (143), Expect = 4e-07
Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Frame = -3
Query: 298 HHRDLRPCKVTYKIIAKILANRLQPILKKIISPNQCAFIPRRH---NTQIIHEAINSMK 131
H R + C + YKI+ K++ NRL+PIL +ISP QC+F+P R N I+ E +SM+
Sbjct: 510 HFRPIGLCNIVYKIVTKVIINRLKPILPSLISPTQCSFVPNRQITDNVIIVQEMFHSMR 568
>gb|AAG51754.1|AC068667_33 reverse transcriptase, putative; 100033-105622 [Arabidopsis thaliana]
Length = 1557
Score = 59.3 bits (142), Expect = 5e-07
Identities = 31/67 (46%), Positives = 41/67 (61%), Gaps = 6/67 (8%)
Frame = -3
Query: 313 EKKNSHHRDLRP---CKVTYKIIAKILANRLQPILKKIISPNQCAFIPRR---HNTQIIH 152
+KK DLRP C V YKII+KI+ RLQP L ++SPNQ AF+P R N I H
Sbjct: 856 QKKPDKMTDLRPISLCSVMYKIISKIMVKRLQPFLPDLVSPNQSAFVPDRLISDNILIAH 915
Query: 151 EAINSMK 131
E ++ ++
Sbjct: 916 EVVHGLR 922
>emb|CCA66020.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1365
Score = 58.9 bits (141), Expect = 7e-07
Identities = 30/57 (52%), Positives = 39/57 (68%), Gaps = 3/57 (5%)
Frame = -3
Query: 292 RDLRPCKVTYKIIAKILANRLQPILKKIISPNQCAFIPRR---HNTQIIHEAINSMK 131
R + C V YKII+KI+ANRL+PILK I++P Q AF+P R N I HE +N +K
Sbjct: 518 RPISLCNVIYKIISKIIANRLKPILKSIVTPYQNAFVPGRLISDNCLIAHEVVNLIK 574
>ref|XP_006485449.1| PREDICTED: uncharacterized protein LOC102621413 [Citrus sinensis]
Length = 2303
Score = 57.4 bits (137), Expect(2) = 8e-07
Identities = 30/65 (46%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Frame = -3
Query: 316 KEKKNSHHRDLRPCKVTYKIIAKILANRLQPILKKIISPNQCAFIPRR---HNTQIIHEA 146
K KK + R + C V Y+I+AK +ANRL+PIL +IISP Q AFIP R N I +E
Sbjct: 475 KPKKVTEFRPISLCNVIYRIVAKTIANRLKPILSQIISPTQSAFIPNRLISDNVIIGYEC 534
Query: 145 INSMK 131
++ ++
Sbjct: 535 LHKIR 539
Score = 21.2 bits (43), Expect(2) = 8e-07
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 9/39 (23%)
Frame = -2
Query: 125 KSGCIALE---------TEWDILLKVNESMDLSEKWCRL 36
K G +AL+ EW L + + + S KW L
Sbjct: 545 KKGLVALKLDISKAYDRVEWTFLKQTMKKLGFSRKWLEL 583
>pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW15) -
Arabidopsis thaliana retrotransposon Ta11-1
gi|976278|gb|AAA75254.1| reverse transcriptase
[Arabidopsis thaliana]
Length = 1333
Score = 58.5 bits (140), Expect = 9e-07
Identities = 31/68 (45%), Positives = 41/68 (60%), Gaps = 6/68 (8%)
Frame = -3
Query: 316 KEKKNSHHRDLRP---CKVTYKIIAKILANRLQPILKKIISPNQCAFIPRR---HNTQII 155
K+KK DLRP C V YKII+KI+ RLQP L ++SPNQ AF+ R N I
Sbjct: 496 KKKKPDKMTDLRPISLCSVLYKIISKIMVRRLQPFLPDLVSPNQSAFVAERLIFDNILIA 555
Query: 154 HEAINSMK 131
HE ++ ++
Sbjct: 556 HEVVHGLR 563
>ref|XP_006491472.1| PREDICTED: uncharacterized protein LOC102626455 [Citrus sinensis]
Length = 1452
Score = 57.8 bits (138), Expect = 2e-06
Identities = 30/66 (45%), Positives = 42/66 (63%), Gaps = 3/66 (4%)
Frame = -3
Query: 319 KKEKKNSHHRDLRPCKVTYKIIAKILANRLQPILKKIISPNQCAFIPRR---HNTQIIHE 149
+K +K R + C V Y+I+AK +ANRL+PIL IISPNQ AFIP R N I +E
Sbjct: 591 EKPRKVMEFRPISLCNVVYRIVAKAIANRLKPILNHIISPNQSAFIPNRLITDNVIIGYE 650
Query: 148 AINSMK 131
++ ++
Sbjct: 651 CLHKIR 656
>gb|AAB48344.1| reverse transcriptase, partial [Arabidopsis thaliana]
Length = 199
Score = 55.1 bits (131), Expect(2) = 2e-06
Identities = 27/63 (42%), Positives = 41/63 (65%), Gaps = 3/63 (4%)
Frame = -3
Query: 310 KKNSHHRDLRPCKVTYKIIAKILANRLQPILKKIISPNQCAFIPRR---HNTQIIHEAIN 140
+K +R + C V YKII+K+L+ RLQP+L+ I+S N AF+P+R N I HE ++
Sbjct: 55 QKMVDYRPIALCTVFYKIISKLLSKRLQPVLQDIVSENHSAFVPKRAITDNVLITHEVLH 114
Query: 139 SMK 131
+K
Sbjct: 115 YLK 117
Score = 21.9 bits (45), Expect(2) = 2e-06
Identities = 8/18 (44%), Positives = 9/18 (50%)
Frame = -2
Query: 98 EWDILLKVNESMDLSEKW 45
EWD + V E M KW
Sbjct: 141 EWDFIRLVMEKMGFHPKW 158
>pir||S65818 RNA-directed DNA polymerase (EC 2.7.7.49) (clone N7) - Arabidopsis
thaliana retrotransposon Ta20 (fragment)
Length = 184
Score = 55.1 bits (131), Expect(2) = 2e-06
Identities = 27/63 (42%), Positives = 41/63 (65%), Gaps = 3/63 (4%)
Frame = -3
Query: 310 KKNSHHRDLRPCKVTYKIIAKILANRLQPILKKIISPNQCAFIPRR---HNTQIIHEAIN 140
+K +R + C V YKII+K+L+ RLQP+L+ I+S N AF+P+R N I HE ++
Sbjct: 49 QKMVDYRPIALCTVFYKIISKLLSKRLQPVLQDIVSENHSAFVPKRAITDNVLITHEVLH 108
Query: 139 SMK 131
+K
Sbjct: 109 YLK 111
Score = 21.9 bits (45), Expect(2) = 2e-06
Identities = 8/18 (44%), Positives = 9/18 (50%)
Frame = -2
Query: 98 EWDILLKVNESMDLSEKW 45
EWD + V E M KW
Sbjct: 135 EWDFIRLVMEKMGFHPKW 152
>gb|AAD40135.1|AF149413_16 contains similarity to retrotransposon Ta11-1 [Arabidopsis
thaliana]
Length = 220
Score = 56.6 bits (135), Expect = 4e-06
Identities = 29/59 (49%), Positives = 40/59 (67%), Gaps = 6/59 (10%)
Frame = -3
Query: 289 DLRP---CKVTYKIIAKILANRLQPILKKIISPNQCAFIPRR---HNTQIIHEAINSMK 131
DLRP C V YK+I+KIL +RL+PIL ++SP Q AF+ R NT I HE ++S++
Sbjct: 3 DLRPISLCSVMYKVISKILVSRLKPILADLVSPTQSAFVEERLISDNTLIAHEIVHSLR 61
>emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1362
Score = 55.8 bits (133), Expect = 6e-06
Identities = 31/60 (51%), Positives = 39/60 (65%), Gaps = 6/60 (10%)
Frame = -3
Query: 292 RDLRP---CKVTYKIIAKILANRLQPILKKIISPNQCAFIPRR---HNTQIIHEAINSMK 131
+D RP C V YKI++K LANRL+ IL IISPNQ AF+PRR N + E ++MK
Sbjct: 505 KDFRPISLCTVLYKILSKTLANRLKVILPAIISPNQSAFVPRRLITDNALVAFEIFHAMK 564
>gb|AAX95129.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group] gi|62733115|gb|AAX95232.1|
retrotransposon protein, putative, unclassified [Oryza
sativa Japonica Group]
Length = 1324
Score = 55.5 bits (132), Expect = 8e-06
Identities = 28/49 (57%), Positives = 36/49 (73%), Gaps = 3/49 (6%)
Frame = -3
Query: 292 RDLRP---CKVTYKIIAKILANRLQPILKKIISPNQCAFIPRRHNTQII 155
+DLRP C V YKI +K+LANRL+P+L +IISP Q AF+P+R T I
Sbjct: 959 KDLRPISLCNVVYKIASKVLANRLKPLLSEIISPIQIAFVPQRMITDNI 1007
>gb|EEE51789.1| hypothetical protein OsJ_33245 [Oryza sativa Japonica Group]
Length = 825
Score = 55.5 bits (132), Expect = 8e-06
Identities = 28/49 (57%), Positives = 36/49 (73%), Gaps = 3/49 (6%)
Frame = -3
Query: 292 RDLRP---CKVTYKIIAKILANRLQPILKKIISPNQCAFIPRRHNTQII 155
+DLRP C V YKI +K+LANRL+P+L +IISP Q AF+P+R T I
Sbjct: 460 KDLRPISLCNVVYKIASKVLANRLKPLLSEIISPIQIAFVPQRMITDNI 508
>gb|ABA91837.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1301
Score = 55.5 bits (132), Expect = 8e-06
Identities = 28/49 (57%), Positives = 36/49 (73%), Gaps = 3/49 (6%)
Frame = -3
Query: 292 RDLRP---CKVTYKIIAKILANRLQPILKKIISPNQCAFIPRRHNTQII 155
+DLRP C V YKI +K+LANRL+P+L +IISP Q AF+P+R T I
Sbjct: 936 KDLRPISLCNVVYKIASKVLANRLKPLLSEIISPIQIAFVPQRMITDNI 984