BLASTX nr result

ID: Akebia23_contig00062482 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia23_contig00062482
         (324 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC28197.1| contains similarity to reverse transcriptases [Ar...    61   1e-07
ref|XP_004310201.1| PREDICTED: uncharacterized protein LOC101298...    61   1e-07
gb|AAD15377.1| putative non-LTR retroelement reverse transcripta...    60   2e-07
emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulga...    60   4e-07
gb|AAG51754.1|AC068667_33 reverse transcriptase, putative; 10003...    59   5e-07
emb|CCA66020.1| hypothetical protein [Beta vulgaris subsp. vulga...    59   7e-07
ref|XP_006485449.1| PREDICTED: uncharacterized protein LOC102621...    57   8e-07
pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW1...    59   9e-07
ref|XP_006491472.1| PREDICTED: uncharacterized protein LOC102626...    58   2e-06
gb|AAB48344.1| reverse transcriptase, partial [Arabidopsis thali...    55   2e-06
pir||S65818 RNA-directed DNA polymerase (EC 2.7.7.49) (clone N7)...    55   2e-06
gb|AAD40135.1|AF149413_16 contains similarity to retrotransposon...    57   4e-06
emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulga...    56   6e-06
gb|AAX95129.1| retrotransposon protein, putative, unclassified [...    55   8e-06
gb|EEE51789.1| hypothetical protein OsJ_33245 [Oryza sativa Japo...    55   8e-06
gb|ABA91837.2| retrotransposon protein, putative, unclassified [...    55   8e-06

>gb|AAC28197.1| contains similarity to reverse transcriptases [Arabidopsis
           thaliana] gi|7267156|emb|CAB77868.1| putative reverse
           transcriptase [Arabidopsis thaliana]
          Length = 1077

 Score = 61.2 bits (147), Expect = 1e-07
 Identities = 33/63 (52%), Positives = 42/63 (66%), Gaps = 3/63 (4%)
 Frame = -3

Query: 310 KKNSHHRDLRPCKVTYKIIAKILANRLQPILKKIISPNQCAFIPRR---HNTQIIHEAIN 140
           +K S +R +  C V YKIIAK+LA RLQPIL   IS NQ AF+P+R    N  I HEA++
Sbjct: 475 QKVSDYRPIALCSVYYKIIAKLLAKRLQPILHSCISENQSAFVPQRAISDNVLITHEALH 534

Query: 139 SMK 131
            +K
Sbjct: 535 YLK 537


>ref|XP_004310201.1| PREDICTED: uncharacterized protein LOC101298860 [Fragaria vesca
           subsp. vesca]
          Length = 1164

 Score = 61.2 bits (147), Expect = 1e-07
 Identities = 30/52 (57%), Positives = 37/52 (71%), Gaps = 3/52 (5%)
 Frame = -3

Query: 316 KEKKNSHHRDLRP---CKVTYKIIAKILANRLQPILKKIISPNQCAFIPRRH 170
           K K   H   LRP   C V YK+ +K+LANRL+PILK +I+PNQ AF+PRRH
Sbjct: 454 KVKVVEHITQLRPISLCNVLYKLGSKVLANRLKPILKSVIAPNQSAFVPRRH 505


>gb|AAD15377.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1044

 Score = 60.5 bits (145), Expect = 2e-07
 Identities = 31/63 (49%), Positives = 44/63 (69%), Gaps = 3/63 (4%)
 Frame = -3

Query: 310 KKNSHHRDLRPCKVTYKIIAKILANRLQPILKKIISPNQCAFIPRR---HNTQIIHEAIN 140
           K+   +R +  C V YKII+K+L+ RLQPIL++IIS NQ AF+P+R    N  I HEA++
Sbjct: 325 KRMVDYRPIALCTVFYKIISKLLSRRLQPILQEIISENQSAFVPKRASNDNVLITHEALH 384

Query: 139 SMK 131
            +K
Sbjct: 385 YLK 387


>emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1378

 Score = 59.7 bits (143), Expect = 4e-07
 Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
 Frame = -3

Query: 298 HHRDLRPCKVTYKIIAKILANRLQPILKKIISPNQCAFIPRRH---NTQIIHEAINSMK 131
           H R +  C + YKI+ K++ NRL+PIL  +ISP QC+F+P R    N  I+ E  +SM+
Sbjct: 510 HFRPIGLCNIVYKIVTKVIINRLKPILPSLISPTQCSFVPNRQITDNVIIVQEMFHSMR 568


>gb|AAG51754.1|AC068667_33 reverse transcriptase, putative; 100033-105622 [Arabidopsis thaliana]
          Length = 1557

 Score = 59.3 bits (142), Expect = 5e-07
 Identities = 31/67 (46%), Positives = 41/67 (61%), Gaps = 6/67 (8%)
 Frame = -3

Query: 313  EKKNSHHRDLRP---CKVTYKIIAKILANRLQPILKKIISPNQCAFIPRR---HNTQIIH 152
            +KK     DLRP   C V YKII+KI+  RLQP L  ++SPNQ AF+P R    N  I H
Sbjct: 856  QKKPDKMTDLRPISLCSVMYKIISKIMVKRLQPFLPDLVSPNQSAFVPDRLISDNILIAH 915

Query: 151  EAINSMK 131
            E ++ ++
Sbjct: 916  EVVHGLR 922


>emb|CCA66020.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1365

 Score = 58.9 bits (141), Expect = 7e-07
 Identities = 30/57 (52%), Positives = 39/57 (68%), Gaps = 3/57 (5%)
 Frame = -3

Query: 292 RDLRPCKVTYKIIAKILANRLQPILKKIISPNQCAFIPRR---HNTQIIHEAINSMK 131
           R +  C V YKII+KI+ANRL+PILK I++P Q AF+P R    N  I HE +N +K
Sbjct: 518 RPISLCNVIYKIISKIIANRLKPILKSIVTPYQNAFVPGRLISDNCLIAHEVVNLIK 574


>ref|XP_006485449.1| PREDICTED: uncharacterized protein LOC102621413 [Citrus sinensis]
          Length = 2303

 Score = 57.4 bits (137), Expect(2) = 8e-07
 Identities = 30/65 (46%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
 Frame = -3

Query: 316 KEKKNSHHRDLRPCKVTYKIIAKILANRLQPILKKIISPNQCAFIPRR---HNTQIIHEA 146
           K KK +  R +  C V Y+I+AK +ANRL+PIL +IISP Q AFIP R    N  I +E 
Sbjct: 475 KPKKVTEFRPISLCNVIYRIVAKTIANRLKPILSQIISPTQSAFIPNRLISDNVIIGYEC 534

Query: 145 INSMK 131
           ++ ++
Sbjct: 535 LHKIR 539



 Score = 21.2 bits (43), Expect(2) = 8e-07
 Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 9/39 (23%)
 Frame = -2

Query: 125 KSGCIALE---------TEWDILLKVNESMDLSEKWCRL 36
           K G +AL+          EW  L +  + +  S KW  L
Sbjct: 545 KKGLVALKLDISKAYDRVEWTFLKQTMKKLGFSRKWLEL 583


>pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW15) -
           Arabidopsis thaliana retrotransposon Ta11-1
           gi|976278|gb|AAA75254.1| reverse transcriptase
           [Arabidopsis thaliana]
          Length = 1333

 Score = 58.5 bits (140), Expect = 9e-07
 Identities = 31/68 (45%), Positives = 41/68 (60%), Gaps = 6/68 (8%)
 Frame = -3

Query: 316 KEKKNSHHRDLRP---CKVTYKIIAKILANRLQPILKKIISPNQCAFIPRR---HNTQII 155
           K+KK     DLRP   C V YKII+KI+  RLQP L  ++SPNQ AF+  R    N  I 
Sbjct: 496 KKKKPDKMTDLRPISLCSVLYKIISKIMVRRLQPFLPDLVSPNQSAFVAERLIFDNILIA 555

Query: 154 HEAINSMK 131
           HE ++ ++
Sbjct: 556 HEVVHGLR 563


>ref|XP_006491472.1| PREDICTED: uncharacterized protein LOC102626455 [Citrus sinensis]
          Length = 1452

 Score = 57.8 bits (138), Expect = 2e-06
 Identities = 30/66 (45%), Positives = 42/66 (63%), Gaps = 3/66 (4%)
 Frame = -3

Query: 319 KKEKKNSHHRDLRPCKVTYKIIAKILANRLQPILKKIISPNQCAFIPRR---HNTQIIHE 149
           +K +K    R +  C V Y+I+AK +ANRL+PIL  IISPNQ AFIP R    N  I +E
Sbjct: 591 EKPRKVMEFRPISLCNVVYRIVAKAIANRLKPILNHIISPNQSAFIPNRLITDNVIIGYE 650

Query: 148 AINSMK 131
            ++ ++
Sbjct: 651 CLHKIR 656


>gb|AAB48344.1| reverse transcriptase, partial [Arabidopsis thaliana]
          Length = 199

 Score = 55.1 bits (131), Expect(2) = 2e-06
 Identities = 27/63 (42%), Positives = 41/63 (65%), Gaps = 3/63 (4%)
 Frame = -3

Query: 310 KKNSHHRDLRPCKVTYKIIAKILANRLQPILKKIISPNQCAFIPRR---HNTQIIHEAIN 140
           +K   +R +  C V YKII+K+L+ RLQP+L+ I+S N  AF+P+R    N  I HE ++
Sbjct: 55  QKMVDYRPIALCTVFYKIISKLLSKRLQPVLQDIVSENHSAFVPKRAITDNVLITHEVLH 114

Query: 139 SMK 131
            +K
Sbjct: 115 YLK 117



 Score = 21.9 bits (45), Expect(2) = 2e-06
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = -2

Query: 98  EWDILLKVNESMDLSEKW 45
           EWD +  V E M    KW
Sbjct: 141 EWDFIRLVMEKMGFHPKW 158


>pir||S65818 RNA-directed DNA polymerase (EC 2.7.7.49) (clone N7) - Arabidopsis
           thaliana retrotransposon Ta20 (fragment)
          Length = 184

 Score = 55.1 bits (131), Expect(2) = 2e-06
 Identities = 27/63 (42%), Positives = 41/63 (65%), Gaps = 3/63 (4%)
 Frame = -3

Query: 310 KKNSHHRDLRPCKVTYKIIAKILANRLQPILKKIISPNQCAFIPRR---HNTQIIHEAIN 140
           +K   +R +  C V YKII+K+L+ RLQP+L+ I+S N  AF+P+R    N  I HE ++
Sbjct: 49  QKMVDYRPIALCTVFYKIISKLLSKRLQPVLQDIVSENHSAFVPKRAITDNVLITHEVLH 108

Query: 139 SMK 131
            +K
Sbjct: 109 YLK 111



 Score = 21.9 bits (45), Expect(2) = 2e-06
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = -2

Query: 98  EWDILLKVNESMDLSEKW 45
           EWD +  V E M    KW
Sbjct: 135 EWDFIRLVMEKMGFHPKW 152


>gb|AAD40135.1|AF149413_16 contains similarity to retrotransposon Ta11-1 [Arabidopsis
           thaliana]
          Length = 220

 Score = 56.6 bits (135), Expect = 4e-06
 Identities = 29/59 (49%), Positives = 40/59 (67%), Gaps = 6/59 (10%)
 Frame = -3

Query: 289 DLRP---CKVTYKIIAKILANRLQPILKKIISPNQCAFIPRR---HNTQIIHEAINSMK 131
           DLRP   C V YK+I+KIL +RL+PIL  ++SP Q AF+  R    NT I HE ++S++
Sbjct: 3   DLRPISLCSVMYKVISKILVSRLKPILADLVSPTQSAFVEERLISDNTLIAHEIVHSLR 61


>emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1362

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 31/60 (51%), Positives = 39/60 (65%), Gaps = 6/60 (10%)
 Frame = -3

Query: 292 RDLRP---CKVTYKIIAKILANRLQPILKKIISPNQCAFIPRR---HNTQIIHEAINSMK 131
           +D RP   C V YKI++K LANRL+ IL  IISPNQ AF+PRR    N  +  E  ++MK
Sbjct: 505 KDFRPISLCTVLYKILSKTLANRLKVILPAIISPNQSAFVPRRLITDNALVAFEIFHAMK 564


>gb|AAX95129.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group] gi|62733115|gb|AAX95232.1|
            retrotransposon protein, putative, unclassified [Oryza
            sativa Japonica Group]
          Length = 1324

 Score = 55.5 bits (132), Expect = 8e-06
 Identities = 28/49 (57%), Positives = 36/49 (73%), Gaps = 3/49 (6%)
 Frame = -3

Query: 292  RDLRP---CKVTYKIIAKILANRLQPILKKIISPNQCAFIPRRHNTQII 155
            +DLRP   C V YKI +K+LANRL+P+L +IISP Q AF+P+R  T  I
Sbjct: 959  KDLRPISLCNVVYKIASKVLANRLKPLLSEIISPIQIAFVPQRMITDNI 1007


>gb|EEE51789.1| hypothetical protein OsJ_33245 [Oryza sativa Japonica Group]
          Length = 825

 Score = 55.5 bits (132), Expect = 8e-06
 Identities = 28/49 (57%), Positives = 36/49 (73%), Gaps = 3/49 (6%)
 Frame = -3

Query: 292 RDLRP---CKVTYKIIAKILANRLQPILKKIISPNQCAFIPRRHNTQII 155
           +DLRP   C V YKI +K+LANRL+P+L +IISP Q AF+P+R  T  I
Sbjct: 460 KDLRPISLCNVVYKIASKVLANRLKPLLSEIISPIQIAFVPQRMITDNI 508


>gb|ABA91837.2| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1301

 Score = 55.5 bits (132), Expect = 8e-06
 Identities = 28/49 (57%), Positives = 36/49 (73%), Gaps = 3/49 (6%)
 Frame = -3

Query: 292  RDLRP---CKVTYKIIAKILANRLQPILKKIISPNQCAFIPRRHNTQII 155
            +DLRP   C V YKI +K+LANRL+P+L +IISP Q AF+P+R  T  I
Sbjct: 936  KDLRPISLCNVVYKIASKVLANRLKPLLSEIISPIQIAFVPQRMITDNI 984


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