BLASTX nr result

ID: Akebia23_contig00056529 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia23_contig00056529
         (259 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]                 62   1e-07
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta...    59   5e-07
gb|AAD22330.1| putative non-LTR retroelement reverse transcripta...    59   5e-07
gb|AAD15471.1| putative non-LTR retroelement reverse transcripta...    59   5e-07
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip...    57   2e-06
emb|CAA73803.1| reverse transcriptase [Allium cepa]                    57   4e-06
gb|AAD17361.1| contains similarity to reverse transcriptases: pa...    56   6e-06
ref|XP_007207609.1| hypothetical protein PRUPE_ppa018907mg, part...    56   6e-06
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga...    56   6e-06

>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
          Length = 740

 Score = 61.6 bits (148), Expect = 1e-07
 Identities = 31/68 (45%), Positives = 42/68 (61%)
 Frame = +2

Query: 5   DNILLSHELGRNFHIDKGSPKAVAKIDRRKAYDIVQ*EAVFKCLELFNFPPMFLRRVKSC 184
           +N+LL+ EL +++H D  SP+   KID  KA+D VQ + +   LE  NFP  F   +K C
Sbjct: 146 ENVLLATELVKDYHKDSISPRCAMKIDISKAFDSVQWQFLLNTLEALNFPENFCHWIKLC 205

Query: 185 ISTTRFSV 208
           IST  FSV
Sbjct: 206 ISTATFSV 213


>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1529

 Score = 59.3 bits (142), Expect = 5e-07
 Identities = 29/68 (42%), Positives = 42/68 (61%)
 Frame = +2

Query: 5    DNILLSHELGRNFHIDKGSPKAVAKIDRRKAYDIVQ*EAVFKCLELFNFPPMFLRRVKSC 184
            +N+LL+ EL +++H +  +P+   KID  KA+D VQ + +   LE  NFP  F   +K C
Sbjct: 870  ENVLLATELVKDYHKESVTPRCAMKIDISKAFDSVQWQFLLNTLEALNFPETFRHWIKLC 929

Query: 185  ISTTRFSV 208
            IST  FSV
Sbjct: 930  ISTATFSV 937


>gb|AAD22330.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 631

 Score = 59.3 bits (142), Expect = 5e-07
 Identities = 30/68 (44%), Positives = 41/68 (60%)
 Frame = +2

Query: 5   DNILLSHELGRNFHIDKGSPKAVAKIDRRKAYDIVQ*EAVFKCLELFNFPPMFLRRVKSC 184
           +N+LL+ EL +++H D  SP+   KID  KA+D VQ + +   LE  NFP      +K C
Sbjct: 143 ENVLLATELVKDYHKDSISPRCAMKIDISKAFDSVQWQFLLNTLEALNFPEKIRHWIKLC 202

Query: 185 ISTTRFSV 208
           IST  FSV
Sbjct: 203 ISTATFSV 210


>gb|AAD15471.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1277

 Score = 59.3 bits (142), Expect = 5e-07
 Identities = 30/68 (44%), Positives = 41/68 (60%)
 Frame = +2

Query: 5   DNILLSHELGRNFHIDKGSPKAVAKIDRRKAYDIVQ*EAVFKCLELFNFPPMFLRRVKSC 184
           +N+LL+ EL +++H D  SP+   KID  KA+D VQ + +   LE   FP  F   +K C
Sbjct: 715 ENVLLATELVKDYHKDSISPRCAMKIDISKAFDSVQWQFLLNTLEALKFPEKFRHWIKLC 774

Query: 185 ISTTRFSV 208
           IST  FSV
Sbjct: 775 ISTATFSV 782


>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
           72.31) [Arabidopsis thaliana]
          Length = 928

 Score = 57.4 bits (137), Expect = 2e-06
 Identities = 28/68 (41%), Positives = 41/68 (60%)
 Frame = +2

Query: 5   DNILLSHELGRNFHIDKGSPKAVAKIDRRKAYDIVQ*EAVFKCLELFNFPPMFLRRVKSC 184
           +N+LL+ E+ +++H D  S +   KID  KA+D VQ + +   LE  NFPP F   +  C
Sbjct: 461 ENVLLATEIVKDYHKDSVSSRCALKIDISKAFDSVQWKFLINVLEAMNFPPEFTHWITLC 520

Query: 185 ISTTRFSV 208
           I+T  FSV
Sbjct: 521 ITTASFSV 528


>emb|CAA73803.1| reverse transcriptase [Allium cepa]
          Length = 137

 Score = 56.6 bits (135), Expect = 4e-06
 Identities = 25/69 (36%), Positives = 43/69 (62%)
 Frame = +2

Query: 5   DNILLSHELGRNFHIDKGSPKAVAKIDRRKAYDIVQ*EAVFKCLELFNFPPMFLRRVKSC 184
           D++LLSHEL + +     +P+A+ K+D  KA+D +Q  ++ + L   NFPP  +  +  C
Sbjct: 47  DHVLLSHELIKGYKRKSATPRAMLKLDIMKAFDTLQWNSIVRILGYMNFPPHIIAWIYEC 106

Query: 185 ISTTRFSVS 211
           IS+  FS++
Sbjct: 107 ISSPTFSIN 115


>gb|AAD17361.1| contains similarity to reverse transcriptases: partial CDS, partial
           [Arabidopsis thaliana] gi|7267375|emb|CAB77936.1|
           putative reverse transcriptase [Arabidopsis thaliana]
          Length = 392

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 29/81 (35%), Positives = 47/81 (58%)
 Frame = +2

Query: 5   DNILLSHELGRNFHIDKGSPKAVAKIDRRKAYDIVQ*EAVFKCLELFNFPPMFLRRVKSC 184
           +N+LL+ E+ + +H D  S ++  KID  KA+D+VQ   +   L   N P  F++ ++ C
Sbjct: 1   ENVLLASEIVKGYHKDSISTRSAIKIDISKAFDLVQWPFLLATLSTLNLPSKFIKWIELC 60

Query: 185 ISTTRFSVSG*KLQRFLEGLF 247
           IST  FS+   ++   L GLF
Sbjct: 61  ISTASFSI---QINGELSGLF 78


>ref|XP_007207609.1| hypothetical protein PRUPE_ppa018907mg, partial [Prunus persica]
            gi|462403251|gb|EMJ08808.1| hypothetical protein
            PRUPE_ppa018907mg, partial [Prunus persica]
          Length = 1566

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 30/69 (43%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
 Frame = +2

Query: 5    DNILLSHELGRNFHIDKGSPKAVA-KIDRRKAYDIVQ*EAVFKCLELFNFPPMFLRRVKS 181
            DNIL++HEL  +F   KGS  A+A KID  KAYD++  + +  CL  F F   +  R+ +
Sbjct: 942  DNILIAHELFHDFKRKKGSMGAMAIKIDLEKAYDLLDWKYIRGCLNQFGFSNDWCDRIMN 1001

Query: 182  CISTTRFSV 208
            C+S+T FS+
Sbjct: 1002 CVSSTSFSM 1010


>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1114

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 28/68 (41%), Positives = 42/68 (61%)
 Frame = +2

Query: 5   DNILLSHELGRNFHIDKGSPKAVAKIDRRKAYDIVQ*EAVFKCLELFNFPPMFLRRVKSC 184
           DNILL+ EL R ++    SP+ V K+D RKAYD V+   +   L+   FP MF+R + +C
Sbjct: 561 DNILLATELIRGYNRRHVSPRCVIKVDIRKAYDSVEWVFLESMLKELGFPSMFIRWIMAC 620

Query: 185 ISTTRFSV 208
           + T  +S+
Sbjct: 621 VKTVSYSI 628


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