BLASTX nr result
ID: Akebia23_contig00056529
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Akebia23_contig00056529 (259 letters) Database: ./nr 38,876,450 sequences; 13,856,398,315 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana] 62 1e-07 gb|AAC33226.1| putative non-LTR retroelement reverse transcripta... 59 5e-07 gb|AAD22330.1| putative non-LTR retroelement reverse transcripta... 59 5e-07 gb|AAD15471.1| putative non-LTR retroelement reverse transcripta... 59 5e-07 gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip... 57 2e-06 emb|CAA73803.1| reverse transcriptase [Allium cepa] 57 4e-06 gb|AAD17361.1| contains similarity to reverse transcriptases: pa... 56 6e-06 ref|XP_007207609.1| hypothetical protein PRUPE_ppa018907mg, part... 56 6e-06 emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga... 56 6e-06 >gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana] Length = 740 Score = 61.6 bits (148), Expect = 1e-07 Identities = 31/68 (45%), Positives = 42/68 (61%) Frame = +2 Query: 5 DNILLSHELGRNFHIDKGSPKAVAKIDRRKAYDIVQ*EAVFKCLELFNFPPMFLRRVKSC 184 +N+LL+ EL +++H D SP+ KID KA+D VQ + + LE NFP F +K C Sbjct: 146 ENVLLATELVKDYHKDSISPRCAMKIDISKAFDSVQWQFLLNTLEALNFPENFCHWIKLC 205 Query: 185 ISTTRFSV 208 IST FSV Sbjct: 206 ISTATFSV 213 >gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana] Length = 1529 Score = 59.3 bits (142), Expect = 5e-07 Identities = 29/68 (42%), Positives = 42/68 (61%) Frame = +2 Query: 5 DNILLSHELGRNFHIDKGSPKAVAKIDRRKAYDIVQ*EAVFKCLELFNFPPMFLRRVKSC 184 +N+LL+ EL +++H + +P+ KID KA+D VQ + + LE NFP F +K C Sbjct: 870 ENVLLATELVKDYHKESVTPRCAMKIDISKAFDSVQWQFLLNTLEALNFPETFRHWIKLC 929 Query: 185 ISTTRFSV 208 IST FSV Sbjct: 930 ISTATFSV 937 >gb|AAD22330.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana] Length = 631 Score = 59.3 bits (142), Expect = 5e-07 Identities = 30/68 (44%), Positives = 41/68 (60%) Frame = +2 Query: 5 DNILLSHELGRNFHIDKGSPKAVAKIDRRKAYDIVQ*EAVFKCLELFNFPPMFLRRVKSC 184 +N+LL+ EL +++H D SP+ KID KA+D VQ + + LE NFP +K C Sbjct: 143 ENVLLATELVKDYHKDSISPRCAMKIDISKAFDSVQWQFLLNTLEALNFPEKIRHWIKLC 202 Query: 185 ISTTRFSV 208 IST FSV Sbjct: 203 ISTATFSV 210 >gb|AAD15471.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana] Length = 1277 Score = 59.3 bits (142), Expect = 5e-07 Identities = 30/68 (44%), Positives = 41/68 (60%) Frame = +2 Query: 5 DNILLSHELGRNFHIDKGSPKAVAKIDRRKAYDIVQ*EAVFKCLELFNFPPMFLRRVKSC 184 +N+LL+ EL +++H D SP+ KID KA+D VQ + + LE FP F +K C Sbjct: 715 ENVLLATELVKDYHKDSISPRCAMKIDISKAFDSVQWQFLLNTLEALKFPEKFRHWIKLC 774 Query: 185 ISTTRFSV 208 IST FSV Sbjct: 775 ISTATFSV 782 >gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score: 72.31) [Arabidopsis thaliana] Length = 928 Score = 57.4 bits (137), Expect = 2e-06 Identities = 28/68 (41%), Positives = 41/68 (60%) Frame = +2 Query: 5 DNILLSHELGRNFHIDKGSPKAVAKIDRRKAYDIVQ*EAVFKCLELFNFPPMFLRRVKSC 184 +N+LL+ E+ +++H D S + KID KA+D VQ + + LE NFPP F + C Sbjct: 461 ENVLLATEIVKDYHKDSVSSRCALKIDISKAFDSVQWKFLINVLEAMNFPPEFTHWITLC 520 Query: 185 ISTTRFSV 208 I+T FSV Sbjct: 521 ITTASFSV 528 >emb|CAA73803.1| reverse transcriptase [Allium cepa] Length = 137 Score = 56.6 bits (135), Expect = 4e-06 Identities = 25/69 (36%), Positives = 43/69 (62%) Frame = +2 Query: 5 DNILLSHELGRNFHIDKGSPKAVAKIDRRKAYDIVQ*EAVFKCLELFNFPPMFLRRVKSC 184 D++LLSHEL + + +P+A+ K+D KA+D +Q ++ + L NFPP + + C Sbjct: 47 DHVLLSHELIKGYKRKSATPRAMLKLDIMKAFDTLQWNSIVRILGYMNFPPHIIAWIYEC 106 Query: 185 ISTTRFSVS 211 IS+ FS++ Sbjct: 107 ISSPTFSIN 115 >gb|AAD17361.1| contains similarity to reverse transcriptases: partial CDS, partial [Arabidopsis thaliana] gi|7267375|emb|CAB77936.1| putative reverse transcriptase [Arabidopsis thaliana] Length = 392 Score = 55.8 bits (133), Expect = 6e-06 Identities = 29/81 (35%), Positives = 47/81 (58%) Frame = +2 Query: 5 DNILLSHELGRNFHIDKGSPKAVAKIDRRKAYDIVQ*EAVFKCLELFNFPPMFLRRVKSC 184 +N+LL+ E+ + +H D S ++ KID KA+D+VQ + L N P F++ ++ C Sbjct: 1 ENVLLASEIVKGYHKDSISTRSAIKIDISKAFDLVQWPFLLATLSTLNLPSKFIKWIELC 60 Query: 185 ISTTRFSVSG*KLQRFLEGLF 247 IST FS+ ++ L GLF Sbjct: 61 ISTASFSI---QINGELSGLF 78 >ref|XP_007207609.1| hypothetical protein PRUPE_ppa018907mg, partial [Prunus persica] gi|462403251|gb|EMJ08808.1| hypothetical protein PRUPE_ppa018907mg, partial [Prunus persica] Length = 1566 Score = 55.8 bits (133), Expect = 6e-06 Identities = 30/69 (43%), Positives = 44/69 (63%), Gaps = 1/69 (1%) Frame = +2 Query: 5 DNILLSHELGRNFHIDKGSPKAVA-KIDRRKAYDIVQ*EAVFKCLELFNFPPMFLRRVKS 181 DNIL++HEL +F KGS A+A KID KAYD++ + + CL F F + R+ + Sbjct: 942 DNILIAHELFHDFKRKKGSMGAMAIKIDLEKAYDLLDWKYIRGCLNQFGFSNDWCDRIMN 1001 Query: 182 CISTTRFSV 208 C+S+T FS+ Sbjct: 1002 CVSSTSFSM 1010 >emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris] Length = 1114 Score = 55.8 bits (133), Expect = 6e-06 Identities = 28/68 (41%), Positives = 42/68 (61%) Frame = +2 Query: 5 DNILLSHELGRNFHIDKGSPKAVAKIDRRKAYDIVQ*EAVFKCLELFNFPPMFLRRVKSC 184 DNILL+ EL R ++ SP+ V K+D RKAYD V+ + L+ FP MF+R + +C Sbjct: 561 DNILLATELIRGYNRRHVSPRCVIKVDIRKAYDSVEWVFLESMLKELGFPSMFIRWIMAC 620 Query: 185 ISTTRFSV 208 + T +S+ Sbjct: 621 VKTVSYSI 628