BLASTX nr result
ID: Akebia23_contig00056529
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Akebia23_contig00056529
(259 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana] 62 1e-07
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta... 59 5e-07
gb|AAD22330.1| putative non-LTR retroelement reverse transcripta... 59 5e-07
gb|AAD15471.1| putative non-LTR retroelement reverse transcripta... 59 5e-07
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip... 57 2e-06
emb|CAA73803.1| reverse transcriptase [Allium cepa] 57 4e-06
gb|AAD17361.1| contains similarity to reverse transcriptases: pa... 56 6e-06
ref|XP_007207609.1| hypothetical protein PRUPE_ppa018907mg, part... 56 6e-06
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga... 56 6e-06
>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
Length = 740
Score = 61.6 bits (148), Expect = 1e-07
Identities = 31/68 (45%), Positives = 42/68 (61%)
Frame = +2
Query: 5 DNILLSHELGRNFHIDKGSPKAVAKIDRRKAYDIVQ*EAVFKCLELFNFPPMFLRRVKSC 184
+N+LL+ EL +++H D SP+ KID KA+D VQ + + LE NFP F +K C
Sbjct: 146 ENVLLATELVKDYHKDSISPRCAMKIDISKAFDSVQWQFLLNTLEALNFPENFCHWIKLC 205
Query: 185 ISTTRFSV 208
IST FSV
Sbjct: 206 ISTATFSV 213
>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1529
Score = 59.3 bits (142), Expect = 5e-07
Identities = 29/68 (42%), Positives = 42/68 (61%)
Frame = +2
Query: 5 DNILLSHELGRNFHIDKGSPKAVAKIDRRKAYDIVQ*EAVFKCLELFNFPPMFLRRVKSC 184
+N+LL+ EL +++H + +P+ KID KA+D VQ + + LE NFP F +K C
Sbjct: 870 ENVLLATELVKDYHKESVTPRCAMKIDISKAFDSVQWQFLLNTLEALNFPETFRHWIKLC 929
Query: 185 ISTTRFSV 208
IST FSV
Sbjct: 930 ISTATFSV 937
>gb|AAD22330.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 631
Score = 59.3 bits (142), Expect = 5e-07
Identities = 30/68 (44%), Positives = 41/68 (60%)
Frame = +2
Query: 5 DNILLSHELGRNFHIDKGSPKAVAKIDRRKAYDIVQ*EAVFKCLELFNFPPMFLRRVKSC 184
+N+LL+ EL +++H D SP+ KID KA+D VQ + + LE NFP +K C
Sbjct: 143 ENVLLATELVKDYHKDSISPRCAMKIDISKAFDSVQWQFLLNTLEALNFPEKIRHWIKLC 202
Query: 185 ISTTRFSV 208
IST FSV
Sbjct: 203 ISTATFSV 210
>gb|AAD15471.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1277
Score = 59.3 bits (142), Expect = 5e-07
Identities = 30/68 (44%), Positives = 41/68 (60%)
Frame = +2
Query: 5 DNILLSHELGRNFHIDKGSPKAVAKIDRRKAYDIVQ*EAVFKCLELFNFPPMFLRRVKSC 184
+N+LL+ EL +++H D SP+ KID KA+D VQ + + LE FP F +K C
Sbjct: 715 ENVLLATELVKDYHKDSISPRCAMKIDISKAFDSVQWQFLLNTLEALKFPEKFRHWIKLC 774
Query: 185 ISTTRFSV 208
IST FSV
Sbjct: 775 ISTATFSV 782
>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
72.31) [Arabidopsis thaliana]
Length = 928
Score = 57.4 bits (137), Expect = 2e-06
Identities = 28/68 (41%), Positives = 41/68 (60%)
Frame = +2
Query: 5 DNILLSHELGRNFHIDKGSPKAVAKIDRRKAYDIVQ*EAVFKCLELFNFPPMFLRRVKSC 184
+N+LL+ E+ +++H D S + KID KA+D VQ + + LE NFPP F + C
Sbjct: 461 ENVLLATEIVKDYHKDSVSSRCALKIDISKAFDSVQWKFLINVLEAMNFPPEFTHWITLC 520
Query: 185 ISTTRFSV 208
I+T FSV
Sbjct: 521 ITTASFSV 528
>emb|CAA73803.1| reverse transcriptase [Allium cepa]
Length = 137
Score = 56.6 bits (135), Expect = 4e-06
Identities = 25/69 (36%), Positives = 43/69 (62%)
Frame = +2
Query: 5 DNILLSHELGRNFHIDKGSPKAVAKIDRRKAYDIVQ*EAVFKCLELFNFPPMFLRRVKSC 184
D++LLSHEL + + +P+A+ K+D KA+D +Q ++ + L NFPP + + C
Sbjct: 47 DHVLLSHELIKGYKRKSATPRAMLKLDIMKAFDTLQWNSIVRILGYMNFPPHIIAWIYEC 106
Query: 185 ISTTRFSVS 211
IS+ FS++
Sbjct: 107 ISSPTFSIN 115
>gb|AAD17361.1| contains similarity to reverse transcriptases: partial CDS, partial
[Arabidopsis thaliana] gi|7267375|emb|CAB77936.1|
putative reverse transcriptase [Arabidopsis thaliana]
Length = 392
Score = 55.8 bits (133), Expect = 6e-06
Identities = 29/81 (35%), Positives = 47/81 (58%)
Frame = +2
Query: 5 DNILLSHELGRNFHIDKGSPKAVAKIDRRKAYDIVQ*EAVFKCLELFNFPPMFLRRVKSC 184
+N+LL+ E+ + +H D S ++ KID KA+D+VQ + L N P F++ ++ C
Sbjct: 1 ENVLLASEIVKGYHKDSISTRSAIKIDISKAFDLVQWPFLLATLSTLNLPSKFIKWIELC 60
Query: 185 ISTTRFSVSG*KLQRFLEGLF 247
IST FS+ ++ L GLF
Sbjct: 61 ISTASFSI---QINGELSGLF 78
>ref|XP_007207609.1| hypothetical protein PRUPE_ppa018907mg, partial [Prunus persica]
gi|462403251|gb|EMJ08808.1| hypothetical protein
PRUPE_ppa018907mg, partial [Prunus persica]
Length = 1566
Score = 55.8 bits (133), Expect = 6e-06
Identities = 30/69 (43%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Frame = +2
Query: 5 DNILLSHELGRNFHIDKGSPKAVA-KIDRRKAYDIVQ*EAVFKCLELFNFPPMFLRRVKS 181
DNIL++HEL +F KGS A+A KID KAYD++ + + CL F F + R+ +
Sbjct: 942 DNILIAHELFHDFKRKKGSMGAMAIKIDLEKAYDLLDWKYIRGCLNQFGFSNDWCDRIMN 1001
Query: 182 CISTTRFSV 208
C+S+T FS+
Sbjct: 1002 CVSSTSFSM 1010
>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1114
Score = 55.8 bits (133), Expect = 6e-06
Identities = 28/68 (41%), Positives = 42/68 (61%)
Frame = +2
Query: 5 DNILLSHELGRNFHIDKGSPKAVAKIDRRKAYDIVQ*EAVFKCLELFNFPPMFLRRVKSC 184
DNILL+ EL R ++ SP+ V K+D RKAYD V+ + L+ FP MF+R + +C
Sbjct: 561 DNILLATELIRGYNRRHVSPRCVIKVDIRKAYDSVEWVFLESMLKELGFPSMFIRWIMAC 620
Query: 185 ISTTRFSV 208
+ T +S+
Sbjct: 621 VKTVSYSI 628