BLASTX nr result

ID: Akebia23_contig00054474 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia23_contig00054474
         (510 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002324825.2| CCR4-NOT transcription complex family protei...    60   2e-07
ref|XP_002324241.2| hypothetical protein POPTR_0018s00911g [Popu...    59   7e-07

>ref|XP_002324825.2| CCR4-NOT transcription complex family protein, partial [Populus
           trichocarpa] gi|550317730|gb|EEF03390.2| CCR4-NOT
           transcription complex family protein, partial [Populus
           trichocarpa]
          Length = 301

 Score = 60.5 bits (145), Expect = 2e-07
 Identities = 28/54 (51%), Positives = 39/54 (72%)
 Frame = -2

Query: 167 RKKIFRIKETI*RYPYISIDIEFPGFLQNTP*DLSQLD**EDLKFNVDQLKIIQ 6
           +++IFR+   + R+P +S D EFPGF +NTP D S L+  EDLK NVD L++IQ
Sbjct: 17  QREIFRLDAALFRFPVVSFDTEFPGFFRNTPIDASDLNRYEDLKHNVDPLRLIQ 70


>ref|XP_002324241.2| hypothetical protein POPTR_0018s00911g [Populus trichocarpa]
           gi|550317754|gb|EEF02806.2| hypothetical protein
           POPTR_0018s00911g [Populus trichocarpa]
          Length = 305

 Score = 58.9 bits (141), Expect = 7e-07
 Identities = 27/54 (50%), Positives = 38/54 (70%)
 Frame = -2

Query: 167 RKKIFRIKETI*RYPYISIDIEFPGFLQNTP*DLSQLD**EDLKFNVDQLKIIQ 6
           +++IFR+   + R+P +S D EFPGF +NTP D + L   EDLK NVD L++IQ
Sbjct: 20  KREIFRLDAALFRFPVVSFDTEFPGFFRNTPIDATDLTRYEDLKHNVDPLRLIQ 73


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