BLASTX nr result
ID: Akebia23_contig00040681
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Akebia23_contig00040681
(563 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006356603.1| PREDICTED: putative ribonuclease H protein A... 61 2e-11
ref|XP_006338209.1| PREDICTED: putative ribonuclease H protein A... 56 1e-07
ref|XP_004292254.1| PREDICTED: putative ribonuclease H protein A... 55 2e-07
ref|YP_003807369.1| ribonuclease H [Desulfarculus baarsii DSM 20... 58 4e-07
ref|XP_004309966.1| PREDICTED: putative ribonuclease H protein A... 54 4e-07
ref|YP_002133127.1| ribonuclease H [Anaeromyxobacter sp. K] gi|2... 55 1e-06
ref|YP_463935.1| ribonuclease H [Anaeromyxobacter dehalogenans 2... 55 1e-06
ref|XP_004228797.1| PREDICTED: putative ribonuclease H protein A... 56 2e-06
ref|XP_004244918.1| PREDICTED: putative ribonuclease H protein A... 57 3e-06
ref|YP_001377960.1| ribonuclease H [Anaeromyxobacter sp. Fw109-5... 53 4e-06
pdb|3U3G|D Chain D, Structure Of Lc11-Rnase H1 Isolated From Com... 56 4e-06
ref|WP_020713171.1| hypothetical protein [Acidobacteriaceae bact... 50 5e-06
ref|XP_004242524.1| PREDICTED: uncharacterized protein LOC101258... 52 7e-06
>ref|XP_006356603.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
tuberosum]
Length = 885
Score = 61.2 bits (147), Expect(2) = 2e-11
Identities = 41/109 (37%), Positives = 62/109 (56%), Gaps = 2/109 (1%)
Frame = -2
Query: 478 GCVLRDDKGHLLRPSWWFFGLSTNNEAEC*AFVHALQSLNGQNV-KLLIEMDSLLLVKGL 302
G +RDDKG L+ G++TN EAE A + AL+ + + + K++IE DSL L K +
Sbjct: 726 GFCIRDDKGDLIYAKAKGIGIATNMEAETVAILTALRECSNRKMQKVIIETDSLSLKKII 785
Query: 301 GGA-PLPWHLDHLVFKAKNILSRFIRCEQHTWRERNSVADALANEAINS 158
+PW + V + + I+ + H +RE NS+AD+LAN AI S
Sbjct: 786 QQTWRVPWKIAEKVEEIREIMEKIKAKITHIFREGNSLADSLANIAIES 834
Score = 33.5 bits (75), Expect(2) = 2e-11
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -1
Query: 545 PDAGWLKLNIDGACRGNPG 489
PD ++K N DGACRGNPG
Sbjct: 703 PDDHYVKSNTDGACRGNPG 721
>ref|XP_006338209.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
tuberosum]
Length = 198
Score = 56.2 bits (134), Expect(2) = 1e-07
Identities = 39/113 (34%), Positives = 64/113 (56%), Gaps = 2/113 (1%)
Frame = -2
Query: 490 VAGGGCVLRDDKGHLLRPSWWFFGLSTNNEAEC*AFVHALQ-SLNGQNVKLLIEMDSLLL 314
++ G LR+ G L+ + G++TN EAE A + A++ +N + K+++E DSLL+
Sbjct: 41 ISAYGYCLRNSNGDLIHVTAENIGITTNVEAEMRAILEAIRYCVNKKMRKIILESDSLLM 100
Query: 313 VKGLGGA-PLPWHLDHLVFKAKNILSRFIRCEQHTWRERNSVADALANEAINS 158
VK + A + W + + K +++ QH +RE N +AD LAN AINS
Sbjct: 101 VKIINEAWKVLWVIAEEFDELKQEMTKIEVKTQHIYREGNKLADYLANLAINS 153
Score = 25.4 bits (54), Expect(2) = 1e-07
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 545 PDAGWLKLNIDGACRGNPG 489
P +K N DGA +GNPG
Sbjct: 22 PHEDVIKCNTDGASKGNPG 40
>ref|XP_004292254.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
vesca subsp. vesca]
Length = 197
Score = 54.7 bits (130), Expect(2) = 2e-07
Identities = 40/123 (32%), Positives = 59/123 (47%), Gaps = 3/123 (2%)
Frame = -2
Query: 490 VAGGGCVLRDDKGHLLRPSWWFFGLSTNNEAEC*AFVHALQSLNGQNV-KLLIEMDSLLL 314
+AG G + RD GH+L G++ EAE +HA+Q + + L IE DS L+
Sbjct: 53 LAGFGGIFRDHLGHVLGCFSGNLGIANALEAELQTVIHAIQMASQRGWHSLWIESDSTLV 112
Query: 313 VKGLGG--APLPWHLDHLVFKAKNILSRFIRCEQHTWRERNSVADALANEAINSAYSVYG 140
+ L +PW F + IL+ H +RE NS+AD LAN ++A G
Sbjct: 113 IHFLSSFQVDVPWRFTTEWFNCRTILTTMTVKVSHIYREGNSIADCLANFGADNA----G 168
Query: 139 LPW 131
+ W
Sbjct: 169 VHW 171
Score = 26.6 bits (57), Expect(2) = 2e-07
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -1
Query: 545 PDAGWLKLNIDGACRGNPG 489
P +KLN DGA RG+PG
Sbjct: 34 PSIYQVKLNTDGAARGSPG 52
>ref|YP_003807369.1| ribonuclease H [Desulfarculus baarsii DSM 2075]
gi|503023252|ref|WP_013258228.1| ribonuclease H
[Desulfarculus baarsii] gi|301639453|gb|ADK84775.1|
ribonuclease H [Desulfarculus baarsii DSM 2075]
Length = 202
Score = 57.8 bits (138), Expect(2) = 4e-07
Identities = 45/116 (38%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Frame = -2
Query: 487 AGGGCVLRDDKGHLLRPSWWFFGLSTNNEAEC*AFVHALQSLNGQNV-KLLIEMDSLLLV 311
AG G V+ D G + + G +TNN AE A + L++ V ++ + +DS LLV
Sbjct: 86 AGAGAVIYDQSGAQIAALSRYLGQATNNVAEYQALLMGLEAALELGVGQIDVRLDSELLV 145
Query: 310 KGLGG-----APLPWHLDHLVFKAKNILSRFIRCE-QHTWRERNSVADALANEAIN 161
K LGG AP HL L KAK +L +F H RE+N VAD LAN+A++
Sbjct: 146 KQLGGQYQVKAP---HLKPLFQKAKALLQQFTGAHIVHVRREQNGVADGLANQAMD 198
Score = 22.3 bits (46), Expect(2) = 4e-07
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 545 PDAGWLKLNIDGACRGNPG 489
P A L DG RGNPG
Sbjct: 66 PQAFAATLYADGGARGNPG 84
>ref|XP_004309966.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
vesca subsp. vesca]
Length = 197
Score = 53.9 bits (128), Expect(2) = 4e-07
Identities = 41/123 (33%), Positives = 60/123 (48%), Gaps = 3/123 (2%)
Frame = -2
Query: 490 VAGGGCVLRDDKGHLLRPSWWFFGLSTNNEAEC*AFVHALQSLNGQNVKLL-IEMDSLLL 314
+AG G + RD G +L G++T EAE A +HA+Q + + + L IE DS L+
Sbjct: 53 LAGFGGIFRDHLGQVLCCFSGNLGIATALEAELQAVIHAIQMASQRGWRSLWIESDSTLV 112
Query: 313 VKGLGG--APLPWHLDHLVFKAKNILSRFIRCEQHTWRERNSVADALANEAINSAYSVYG 140
+ L +PW F + IL+ H +RE N VAD LAN ++A G
Sbjct: 113 IHFLSSFQVDVPWRFTTEWFNCRTILTSMTVKVSHIYREGNRVADCLANFGADNA----G 168
Query: 139 LPW 131
+ W
Sbjct: 169 VHW 171
Score = 26.2 bits (56), Expect(2) = 4e-07
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = -1
Query: 530 LKLNIDGACRGNPG 489
+KLN DGA RG+PG
Sbjct: 39 VKLNTDGAARGSPG 52
>ref|YP_002133127.1| ribonuclease H [Anaeromyxobacter sp. K]
gi|220915876|ref|YP_002491180.1| ribonuclease H
[Anaeromyxobacter dehalogenans 2CP-1]
gi|501516889|ref|WP_012524826.1| ribonuclease H
[Anaeromyxobacter] gi|196171025|gb|ACG71998.1|
ribonuclease H [Anaeromyxobacter sp. K]
gi|219953730|gb|ACL64114.1| ribonuclease H
[Anaeromyxobacter dehalogenans 2CP-1]
Length = 253
Score = 55.5 bits (132), Expect(2) = 1e-06
Identities = 41/113 (36%), Positives = 62/113 (54%), Gaps = 4/113 (3%)
Frame = -2
Query: 487 AGGGCVLRDDKGHLLRPSWWFFGLSTNNEAEC*AFVHALQSLNGQNVK-LLIEMDSLLLV 311
AG G V+ + GH++ F G STNN AE + L+ +K L + DS L+V
Sbjct: 138 AGAGAVIVNADGHIVAKIGKFLGDSTNNVAEYMGLILGLKRAKAMGIKELEVLSDSELMV 197
Query: 310 KGLGG--APLPWHLDHLVFKAKNILSRFIRCE-QHTWRERNSVADALANEAIN 161
K L G A HL L +A+ +++ F R + +H RE N++ADA++N AI+
Sbjct: 198 KQLAGDYAVKADHLRPLHDEARALIAGFDRIQVRHVPREENTLADAMSNRAID 250
Score = 23.1 bits (48), Expect(2) = 1e-06
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -1
Query: 527 KLNIDGACRGNPG 489
+L DGA RGNPG
Sbjct: 124 RLFTDGAARGNPG 136
>ref|YP_463935.1| ribonuclease H [Anaeromyxobacter dehalogenans 2CP-C]
gi|499739047|ref|WP_011419781.1| ribonuclease H
[Anaeromyxobacter dehalogenans]
gi|85773661|gb|ABC80498.1| ribonuclease H
[Anaeromyxobacter dehalogenans 2CP-C]
Length = 168
Score = 55.1 bits (131), Expect(2) = 1e-06
Identities = 41/113 (36%), Positives = 62/113 (54%), Gaps = 4/113 (3%)
Frame = -2
Query: 487 AGGGCVLRDDKGHLLRPSWWFFGLSTNNEAEC*AFVHALQSLNGQNVK-LLIEMDSLLLV 311
AG G V+ + GH++ F G STNN AE + L+ +K L + DS L+V
Sbjct: 53 AGAGAVIVNADGHIVAKIGKFLGDSTNNVAEYMGLILGLKRAKAMGIKELEVLSDSELMV 112
Query: 310 KGLGG--APLPWHLDHLVFKAKNILSRFIRCE-QHTWRERNSVADALANEAIN 161
K L G A HL L +A+ +++ F R + +H RE N++ADA++N AI+
Sbjct: 113 KQLAGDYAVKADHLRPLHDEAQALIAGFDRIQVRHVPREENALADAMSNRAID 165
Score = 23.1 bits (48), Expect(2) = 1e-06
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -1
Query: 527 KLNIDGACRGNPG 489
+L DGA RGNPG
Sbjct: 39 RLFTDGAARGNPG 51
>ref|XP_004228797.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
lycopersicum]
Length = 389
Score = 56.2 bits (134), Expect(2) = 2e-06
Identities = 39/107 (36%), Positives = 58/107 (54%), Gaps = 4/107 (3%)
Frame = -2
Query: 484 GGGCVLRDDKGHLLRPSWWFFGLSTNNEAEC*AFVHALQSLNGQNV-KLLIEMDSLLLVK 308
GGG +LRD +G L+ G TNN AE A +H LQ K+++E+DS LL K
Sbjct: 236 GGGGILRDHQGKLIYAFAIPLGFGTNNFAEIQAALHGLQWCQQHGFEKIILEVDSELLHK 295
Query: 307 G-LGGAPLPWHLDHLVFKAKNILSRF--IRCEQHTWRERNSVADALA 176
+ + +PW H + + +NI ++ +C +H +RE N AD LA
Sbjct: 296 WIINKSSVPWRCLHYIQQIQNISNKMEVFQC-KHIYREANGTADLLA 341
Score = 21.2 bits (43), Expect(2) = 2e-06
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -1
Query: 545 PDAGWLKLNIDGACRGNPG 489
P G KLN DG+ + N G
Sbjct: 215 PPEGIHKLNTDGSAKHNTG 233
>ref|XP_004244918.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
lycopersicum]
Length = 1010
Score = 57.4 bits (137), Expect = 3e-06
Identities = 38/114 (33%), Positives = 62/114 (54%), Gaps = 4/114 (3%)
Frame = -2
Query: 505 VEEILVAGGGCVLRDDKGHLLRPSWWFFGLSTNNEAEC*AFVHALQSLNGQNVK-LLIEM 329
+ I GGG +LRD G L+ FG+ TNN AE A ++ L K +++E+
Sbjct: 850 IHNINKIGGGGILRDHNGKLIYAFAIPFGIGTNNFAEMKAALYGLSWCEQHGYKRIILEV 909
Query: 328 DSLLLVKGLGGA-PLPWHLDHLVFKAKNILSR--FIRCEQHTWRERNSVADALA 176
DS LL K + + +PW +++ ++I+++ + +C QH +RE N AD LA
Sbjct: 910 DSELLSKWIDNSINIPWRCQPTIYQIQDIVNKMEYFQC-QHIFREANGTADLLA 962
>ref|YP_001377960.1| ribonuclease H [Anaeromyxobacter sp. Fw109-5]
gi|500745284|ref|WP_011985082.1| ribonuclease H
[Anaeromyxobacter sp. Fw109-5]
gi|152027208|gb|ABS24976.1| ribonuclease H
[Anaeromyxobacter sp. Fw109-5]
Length = 254
Score = 53.1 bits (126), Expect(2) = 4e-06
Identities = 42/113 (37%), Positives = 57/113 (50%), Gaps = 4/113 (3%)
Frame = -2
Query: 487 AGGGCVLRDDKGHLLRPSWWFFGLSTNNEAEC*AFVHALQSLNGQNVK-LLIEMDSLLLV 311
AG G V+ GH++ F G STNN AE + L+ +K L + DS LLV
Sbjct: 139 AGAGAVIVSPDGHIVAKVGKFLGESTNNVAEYMGLILGLRRAKAMGIKELEVFADSELLV 198
Query: 310 KGLGG--APLPWHLDHLVFKAKNILSRFIRCE-QHTWRERNSVADALANEAIN 161
K L G A HL L +A+ +L F + +H RE N ADA++N AI+
Sbjct: 199 KQLAGDYAVKAEHLRPLHDEAQQLLKGFSWIQVRHIPREENGQADAMSNRAID 251
Score = 23.5 bits (49), Expect(2) = 4e-06
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -1
Query: 527 KLNIDGACRGNPG 489
+L DGA RGNPG
Sbjct: 125 RLYTDGAARGNPG 137
>pdb|3U3G|D Chain D, Structure Of Lc11-Rnase H1 Isolated From Compost By
Metagenomic Approach: Insight Into The Structural Bases
For Unusual Enzymatic Properties Of Sto-Rnase H1
gi|379318426|pdb|3U3G|B Chain B, Structure Of Lc11-Rnase
H1 Isolated From Compost By Metagenomic Approach:
Insight Into The Structural Bases For Unusual Enzymatic
Properties Of Sto-Rnase H1 gi|379318427|pdb|3U3G|C Chain
C, Structure Of Lc11-Rnase H1 Isolated From Compost By
Metagenomic Approach: Insight Into The Structural Bases
For Unusual Enzymatic Properties Of Sto-Rnase H1
gi|379318428|pdb|3U3G|A Chain A, Structure Of Lc11-Rnase
H1 Isolated From Compost By Metagenomic Approach:
Insight Into The Structural Bases For Unusual Enzymatic
Properties Of Sto-Rnase H1 gi|258450519|gb|ACV72189.1|
ribonuclease H [uncultured organism]
Length = 140
Score = 55.8 bits (133), Expect(2) = 4e-06
Identities = 44/125 (35%), Positives = 63/125 (50%), Gaps = 12/125 (9%)
Frame = -2
Query: 487 AGGGCVLRDDKGHLLRPSWWFFGLSTNNEAEC*AFVHALQSLNGQNVKLL-----IEMDS 323
AG G V+ D+KG+ L S + G +TNN AE A + AL+ L KL+ + MDS
Sbjct: 19 AGIGVVITDEKGNTLHESSAYIGETTNNVAEYEALIRALEDLQMFGDKLVDMEVEVRMDS 78
Query: 322 LLLVKGLGGAPLPWHLDHLVFKAKNILSRFIRCEQ-------HTWRERNSVADALANEAI 164
L+V+ + G + + K K I+ E+ H RE+N+ AD L NEAI
Sbjct: 79 ELIVRQMQGV---YKVKEPTLKEKFAKIAHIKMERVPNLVFVHIPREKNARADELVNEAI 135
Query: 163 NSAYS 149
+ A S
Sbjct: 136 DKALS 140
Score = 20.8 bits (42), Expect(2) = 4e-06
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = -1
Query: 515 DGACRGNPG 489
DG RGNPG
Sbjct: 9 DGGARGNPG 17
>ref|WP_020713171.1| hypothetical protein [Acidobacteriaceae bacterium KBS 89]
Length = 243
Score = 50.4 bits (119), Expect(2) = 5e-06
Identities = 40/116 (34%), Positives = 64/116 (55%), Gaps = 7/116 (6%)
Frame = -2
Query: 487 AGGGCVLRDDKGHLLRPSWWFFGLSTNNEAEC*AFVHALQ-SLNGQNVKLLIEMDSLLLV 311
AG G +++DD+G++L F G+ TNN AE + LQ +L+ + +L + DS L+V
Sbjct: 60 AGYGALIQDDQGNVLAELSEFLGMRTNNYAEYSGLLGCLQYALDHHHPRLRVVSDSELMV 119
Query: 310 KGLGG-----APLPWHLDHLVFKAKNILSRFIRCE-QHTWRERNSVADALANEAIN 161
K + G +P L L +A+N +++ E H R +N AD LANEA++
Sbjct: 120 KQIQGKYKVNSP---DLRPLWQEARNRIAKLDAFEISHALRHKNKDADRLANEAMD 172
Score = 25.8 bits (55), Expect(2) = 5e-06
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -1
Query: 539 AGWLKLNIDGACRGNPG 489
+ W+ + DG RGNPG
Sbjct: 42 SSWINAHCDGGARGNPG 58
>ref|XP_004242524.1| PREDICTED: uncharacterized protein LOC101258077 [Solanum
lycopersicum]
Length = 1454
Score = 52.4 bits (124), Expect(2) = 7e-06
Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 3/111 (2%)
Frame = -2
Query: 484 GGGCVLRDDKGHLLRPSWWFFGLSTNNEAEC*AFVHALQSLNGQNVKLL-IEMDSLLLVK 308
GGG +LRD++G ++ FG TNN AE A +H L K + +E+DS LL
Sbjct: 1301 GGGGILRDNQGKIIYAFSLPFGFGTNNFAEIKAALHGLDWCEQHGYKKIELEVDSKLLCN 1360
Query: 307 GL-GGAPLPWHLDHLVFKAKNILSRFIRCE-QHTWRERNSVADALANEAIN 161
+ +PW + L+ + I+ + + + H +RE N AD L+ + N
Sbjct: 1361 WINSNINIPWRYEELIQQIHQIIRKMDQFQCHHIYREANCTADLLSKWSHN 1411
Score = 23.1 bits (48), Expect(2) = 7e-06
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -1
Query: 545 PDAGWLKLNIDGACRGNPG 489
PD G KLN DG+ N G
Sbjct: 1280 PDLGKYKLNTDGSALQNSG 1298