BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia23_contig00028696
         (716 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN64816.1| hypothetical protein VITISV_010668 [Vitis vinifera]    61   6e-13
gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hop...    60   3e-12
emb|CAN61640.1| hypothetical protein VITISV_021909 [Vitis vinifera]    59   3e-11
emb|CAN66823.1| hypothetical protein VITISV_003499 [Vitis vinifera]    63   3e-11
pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc...    57   5e-11
gb|AAB82754.1| retrofit [Oryza longistaminata]                         57   1e-10
gb|AAT39281.2| Integrase core domain containing protein [Solanum...    58   2e-10
gb|ACY72569.1| unknown [Oryza sativa Japonica Group]                   54   2e-10
gb|AAN04167.1| Putative copia-like retrotransposon polyprotein [...    52   2e-10
gb|AAP94600.1| putative copia-like retrotransposon Hopscotch pol...    60   3e-10
gb|AAL31076.1|AC091749_5 putaive copia-like retrotransposon poly...    52   3e-10
gb|ABA97008.1| retrotransposon protein, putative, Ty1-copia subc...    55   4e-10
gb|AAP53968.1| retrotransposon protein, putative, Ty1-copia subc...    54   4e-10
dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol p...    57   5e-10
gb|EMT21953.1| ABC transporter C family member 10 [Aegilops taus...    47   7e-10
emb|CAE04319.3| OSJNBb0016D16.10 [Oryza sativa Japonica Group]         57   7e-10
gb|ACV42639.1| gag/pol [Oryza sativa Japonica Group]                   57   9e-10
gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group...    54   9e-10
gb|AAR88589.1| putative copia-like retrotransposon protein [Oryz...    49   1e-09
gb|ABF95616.1| retrotransposon protein, putative, Ty1-copia subc...    49   1e-09

>emb|CAN64816.1| hypothetical protein VITISV_010668 [Vitis vinifera]
          Length = 1212

 Score = 60.8 bits (146), Expect(2) = 6e-13
 Identities = 51/170 (30%), Positives = 81/170 (47%), Gaps = 8/170 (4%)
 Frame = -1

Query: 680  TSFAPNDNSFVALTWSILPMVTWSHDGTRLPKIFFSIRHRLSCLFFNSPLPSKTIFFYWG 501
            ++F P+ +S   +T S  PM+T    G   P+++ ++    S   F + L  K    +WG
Sbjct: 680  STFPPSVSSAPRVTTSSHPMITRGKAGIFKPRLYHAMNVLSSSQTFQALLALKE---HWG 736

Query: 500  FQ*SI-------TMMDEFNIVLRNHTWILV-LTSSMNIVGCK*VLNSSNNAXXXXXXXXX 345
            F+ +         M DE   +  N TW+LV   ++ N+VG + +  +             
Sbjct: 737  FKPATKHPEWLSAMDDEIQALKTNDTWVLVPCPTNHNMVGYRWIFKTK--LQLDGSIEHH 794

Query: 344  XXXXMAKGFNQQHGLDFDDAFSLIVMPTTI*IVLTFDIS*EWLLC*L*VK 195
                +A+GF+Q HGLDF D FS +V   TI I+L+  I+  W L  L VK
Sbjct: 795  KARLVAQGFSQIHGLDFGDTFSPVVRLATIRIILSLAITSGWRLHQLDVK 844



 Score = 39.7 bits (91), Expect(2) = 6e-13
 Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
 Frame = -3

Query: 192  HAFPHDVLSE*FYVKQPTWALWIWFT--LCTFGNIIMYDLKQVPQAWFDHFSSDLLELRF 19
            +AF H  L+E  Y++QP       F   +C     + Y LKQ P+AWF  FSS LL+L F
Sbjct: 845  NAFLHGFLNEEVYMEQPPGYTNPQFPQHVCRLKRAL-YGLKQAPRAWFHRFSSFLLKLGF 903

Query: 18   IARK 7
             + +
Sbjct: 904  FSNQ 907


>gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hopscotch polyprotein [Zea mays]
          Length = 1313

 Score = 59.7 bits (143), Expect(2) = 3e-12
 Identities = 44/137 (32%), Positives = 63/137 (45%), Gaps = 1/137 (0%)
 Frame = -1

Query: 602  GTRLPKIFFSIRHRLSCLFFNSPLPSKTIFFYWGFQ*SITMMDEFNIVLRNHTWILVLTS 423
            G R PK++     R  C F +S  P               M  E++ +++N TW LV   
Sbjct: 782  GVRKPKVYTDGTIRYGC-FTSSGEPYDLNEALGDVNWKDAMDIEYSALMKNKTWHLVPPK 840

Query: 422  S-MNIVGCK*VLNSSNNAXXXXXXXXXXXXXMAKGFNQQHGLDFDDAFSLIVMPTTI*IV 246
               N++GCK V      A              AKG+ QQ+G+D+DD FS +V   TI I+
Sbjct: 841  KGRNVIGCKWVYKIKRKADGSLDRYKARLV--AKGYKQQYGIDYDDTFSPVVKHATIRII 898

Query: 245  LTFDIS*EWLLC*L*VK 195
            L+  +S  W LC L V+
Sbjct: 899  LSIAVSRGWSLCQLDVQ 915



 Score = 38.5 bits (88), Expect(2) = 3e-12
 Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
 Frame = -3

Query: 216  SLLAIS*NHAFPHDVLSE*FYVKQPTWALWIWFTLCTFGNII------MYDLKQVPQAWF 55
            SL  +   +AF H VL E  Y++QP       +   T  N +      +Y LKQ P+AW+
Sbjct: 908  SLCQLDVQNAFLHGVLEEEVYMQQPPG-----YEDSTKLNYVCKLDKALYGLKQAPRAWY 962

Query: 54   DHFSSDLLELRFIARK 7
               S+ LL L F A K
Sbjct: 963  SRLSNKLLSLGFQASK 978


>emb|CAN61640.1| hypothetical protein VITISV_021909 [Vitis vinifera]
          Length = 1361

 Score = 58.5 bits (140), Expect(2) = 3e-11
 Identities = 47/158 (29%), Positives = 75/158 (47%), Gaps = 8/158 (5%)
 Frame = -1

Query: 644  LTWSILPMVTWSHDGTRLPKIFFSIRHRLSCLFFNSPLPSKTIFFYWGFQ*SI------- 486
            +T S  PM+T    G   P+++ ++    S   F + L  K      GF+ +        
Sbjct: 798  VTTSNHPMITRGKAGIFKPRLYHAMHISSSSQLFQAFLALKEPR---GFKSAAKHPEWLS 854

Query: 485  TMMDEFNIVLRNHTWILV-LTSSMNIVGCK*VLNSSNNAXXXXXXXXXXXXXMAKGFNQQ 309
             M DE + + +N TW+LV      N+VGC+ +  +  ++              A+GF+Q 
Sbjct: 855  AMDDEIHALKKNDTWVLVPRPQHHNVVGCRWIFKTKLHSDGSIERHKARLV--AQGFSQV 912

Query: 308  HGLDFDDAFSLIVMPTTI*IVLTFDIS*EWLLC*L*VK 195
            HGLDF D FS +V P T+ I+L+  ++  W L  L VK
Sbjct: 913  HGLDFGDTFSPVVRPATVRIILSLAVTSGWRLHQLDVK 950



 Score = 36.2 bits (82), Expect(2) = 3e-11
 Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
 Frame = -3

Query: 192  HAFPHDVLSE*FYVKQPTWALWIWFT--LCTFGNIIMYDLKQVPQAWFDHFSSDLLELRF 19
            +AF H  L+E  Y++QP       F   +C     + Y LKQ P+AWF  FSS LL+  F
Sbjct: 951  NAFLHGFLNEEVYMEQPPGYTDPQFPQHVCRLKRAL-YGLKQAPRAWFHRFSSFLLKHGF 1009


>emb|CAN66823.1| hypothetical protein VITISV_003499 [Vitis vinifera]
          Length = 763

 Score = 62.8 bits (151), Expect(2) = 3e-11
 Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
 Frame = -1

Query: 488 ITMMDEFNIVLRNHTWILV-LTSSMNIVGCK*VLNSSNNAXXXXXXXXXXXXXMAKGFNQ 312
           I M+DE++++LRN+TW LV L +   ++ CK +     N               AKGF+Q
Sbjct: 444 IAMIDEYSVLLRNNTWSLVDLPAGRKVIRCKWIFRVKENPDGSINKYKARLI--AKGFHQ 501

Query: 311 QHGLDFDDAFSLIVMPTTI*IVLTFDIS*EW 219
             G D+ + FS +V PTTI +VLT  +S  W
Sbjct: 502 TTGFDYTETFSPVVKPTTIRVVLTITLSRNW 532



 Score = 32.0 bits (71), Expect(2) = 3e-11
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = -3

Query: 195 NHAFPHDVLSE*FYVKQPTWALW--IWFTLCTFGNIIMYDLKQVPQAWFDHFSSDLLELR 22
           N+AF +  L E  Y++QP   +       +C     + Y LKQVP+AWF+     L+ L 
Sbjct: 540 NNAFLNGDLQEEVYMEQPKGFIEKSTSHLVCKLHKSL-YGLKQVPRAWFEKLYEALVGLG 598

Query: 21  FIARK 7
           F + K
Sbjct: 599 FTSAK 603


>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
            gi|531389|gb|AAA57005.1| copia-like retrotransposon
            Hopscotch polyprotein [Zea mays]
          Length = 1439

 Score = 57.0 bits (136), Expect(2) = 5e-11
 Identities = 34/91 (37%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
 Frame = -1

Query: 482  MMDEFNIVLRNHTWILVLTS-SMNIVGCK*VLNSSNNAXXXXXXXXXXXXXMAKGFNQQH 306
            M  EF  + +N+TW LV    + N++ CK V     NA              AKGF QQ+
Sbjct: 941  MEAEFQALQKNNTWTLVPPDRTRNLIDCKWVFKVKYNADGSIDRLKARLV--AKGFKQQY 998

Query: 305  GLDFDDAFSLIVMPTTI*IVLTFDIS*EWLL 213
            G+D+DD FS +V  +TI +VL+  +S +W L
Sbjct: 999  GIDYDDTFSPVVKHSTIRLVLSLAVSQKWSL 1029



 Score = 37.0 bits (84), Expect(2) = 5e-11
 Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
 Frame = -3

Query: 216  SLLAIS*NHAFPHDVLSE*FYVKQPTWALWIWFTLCTFGNI------IMYDLKQVPQAWF 55
            SL  +   +AF H +L E  Y+KQP       F   T  N        +Y LKQ P+AW+
Sbjct: 1028 SLRQLDVQNAFLHGILEETVYMKQPPG-----FADTTHPNYHCHLQKSLYGLKQRPRAWY 1082

Query: 54   DHFSSDLLELRFIARK 7
               S  L  L F+  K
Sbjct: 1083 SRLSEKLQSLGFVPSK 1098


>gb|AAB82754.1| retrofit [Oryza longistaminata]
          Length = 1445

 Score = 57.0 bits (136), Expect(2) = 1e-10
 Identities = 33/91 (36%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
 Frame = -1

Query: 482  MMDEFNIVLRNHTWILV-LTSSMNIVGCK*VLNSSNNAXXXXXXXXXXXXXMAKGFNQQH 306
            M  E+N +++N TW LV      NI+GCK V      A              AKGF Q++
Sbjct: 953  METEYNALIKNDTWHLVPYEKGQNIIGCKWVYKIKRKADGTLDRYKARLV--AKGFKQRY 1010

Query: 305  GLDFDDAFSLIVMPTTI*IVLTFDIS*EWLL 213
            G+D++D FS +V   TI I+L+  +S  W L
Sbjct: 1011 GIDYEDTFSPVVKAATIRIILSIAVSRGWSL 1041



 Score = 35.8 bits (81), Expect(2) = 1e-10
 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
 Frame = -3

Query: 216  SLLAIS*NHAFPHDVLSE*FYVKQPTWALWIWFTLCTFGNII------MYDLKQVPQAWF 55
            SL  +   +AF H  L E  Y++QP       F   +  + +      +Y LKQ P+AW+
Sbjct: 1040 SLRQLDVQNAFLHGFLEEEVYMQQPPG-----FESSSKPDYVCKLDKALYGLKQAPRAWY 1094

Query: 54   DHFSSDLLELRFIARK 7
               S  L+EL F A K
Sbjct: 1095 SRLSKKLVELGFEASK 1110


>gb|AAT39281.2| Integrase core domain containing protein [Solanum demissum]
          Length = 1760

 Score = 57.8 bits (138), Expect(2) = 2e-10
 Identities = 55/154 (35%), Positives = 69/154 (44%), Gaps = 1/154 (0%)
 Frame = -1

Query: 677  SFAPNDNSFVALTWSILPMVTWSHDGTRLPKIFFSIRHRLSCLFFNSPLPSKTIFFYWGF 498
            + AP+D S V  T S  PMVT S   +  PK F S+  +LS  F            +W  
Sbjct: 858  ALAPSDPSPVVTT-SSHPMVTRSKTNSLQPKQF-SVNVQLSSSFVPHTYKQACPHPHW-- 913

Query: 497  Q*SITMMDEFNIVLRNHTWILV-LTSSMNIVGCK*VLNSSNNAXXXXXXXXXXXXXMAKG 321
                 M  EF+ ++RN TW LV +T SMN+V  K  L                   +AKG
Sbjct: 914  --REAMHAEFDALVRNWTWDLVPVTHSMNVVEYKARL-------------------VAKG 952

Query: 320  FNQQHGLDFDDAFSLIVMPTTI*IVLTFDIS*EW 219
            F Q  GLDF   FS +V P TI +VLT      W
Sbjct: 953  FTQHPGLDFHSTFSPVVKPITIRLVLTIVTQYNW 986



 Score = 33.9 bits (76), Expect(2) = 2e-10
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = -3

Query: 195  NHAFPHDVLSE*FYVKQPTWA--LWIWFTLCTFGNIIMYDLKQVPQAWFDHFSSDLLELR 22
            N+AF    L E  Y++QP       +   +C    +I Y LKQ P+AW++   S LL + 
Sbjct: 994  NNAFLQGSLEEEVYMRQPPGFEDQSLSTHVCKLNKVI-YGLKQAPRAWYNELKSYLLTVG 1052

Query: 21   FI 16
            F+
Sbjct: 1053 FV 1054


>gb|ACY72569.1| unknown [Oryza sativa Japonica Group]
          Length = 1436

 Score = 54.3 bits (129), Expect(2) = 2e-10
 Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
 Frame = -1

Query: 482  MMDEFNIVLRNHTWILV-LTSSMNIVGCK*VLNSSNNAXXXXXXXXXXXXXMAKGFNQQH 306
            M  E++ +++N TW LV      N++GCK V      A              AKGF Q++
Sbjct: 944  MEAEYDALIKNDTWHLVPYEKGQNVIGCKWVYKIKRKADGTLDRYKARLV--AKGFKQRY 1001

Query: 305  GLDFDDAFSLIVMPTTI*IVLTFDIS*EWLL 213
            G+D++D FS +V   TI I+L+  +S  W L
Sbjct: 1002 GIDYEDTFSPVVKAATIRIILSIAVSRGWSL 1032



 Score = 37.4 bits (85), Expect(2) = 2e-10
 Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
 Frame = -3

Query: 216  SLLAIS*NHAFPHDVLSE*FYVKQPTWALWIWFTLCTFGNII------MYDLKQVPQAWF 55
            SL  +   +AF H  L E  Y++QP       F   +  N +      +Y LKQ P+AW+
Sbjct: 1031 SLRQLDVQNAFLHGFLEEEVYMQQPPG-----FESFSKPNYVCKLDKALYGLKQAPRAWY 1085

Query: 54   DHFSSDLLELRFIARK 7
               S  L+EL F A K
Sbjct: 1086 SRLSKKLVELGFEASK 1101


>gb|AAN04167.1| Putative copia-like retrotransposon polyprotein [Oryza sativa
            Japonica Group] gi|31431217|gb|AAP53032.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1042

 Score = 52.4 bits (124), Expect(2) = 2e-10
 Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
 Frame = -1

Query: 482  MMDEFNIVLRNHTWILV-LTSSMNIVGCK*VLNSSNNAXXXXXXXXXXXXXMAKGFNQQH 306
            M  E+  +++N TW LV   S  N++ CK V      A              AKGF Q++
Sbjct: 784  MDSEYTALMKNKTWHLVPAKSDRNVIDCKWVYKIKRKADGSLDRYKARLV--AKGFKQRY 841

Query: 305  GLDFDDAFSLIVMPTTI*IVLTFDIS*EWLL 213
            G+D++D FS +V   TI ++L+  +S  W L
Sbjct: 842  GIDYEDTFSPVVKAATIRVILSIAVSRGWSL 872



 Score = 39.3 bits (90), Expect(2) = 2e-10
 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
 Frame = -3

Query: 216  SLLAIS*NHAFPHDVLSE*FYVKQPTWALWIWFTLCTFGNII------MYDLKQVPQAWF 55
            SL  +  ++AF H +L E  Y++QP     + + + +  N +      +Y LKQ P+ W+
Sbjct: 871  SLRQLDVSNAFLHGILEEEVYMRQP-----LGYEVSSLPNHVCKLDKALYGLKQAPRVWY 925

Query: 54   DHFSSDLLELRFIARK 7
               S+ L EL F A K
Sbjct: 926  SRLSTKLQELGFQASK 941


>gb|AAP94600.1| putative copia-like retrotransposon Hopscotch polyprotein [Zea mays]
          Length = 969

 Score = 59.7 bits (143), Expect(2) = 3e-10
 Identities = 44/137 (32%), Positives = 63/137 (45%), Gaps = 1/137 (0%)
 Frame = -1

Query: 602  GTRLPKIFFSIRHRLSCLFFNSPLPSKTIFFYWGFQ*SITMMDEFNIVLRNHTWILVLTS 423
            G R PK++     R  C F +S  P               M  E++ +++N TW LV   
Sbjct: 782  GVRKPKVYTDGTIRYGC-FTSSGEPYDLNEALGDVNWKDAMDIEYSALMKNKTWHLVPPK 840

Query: 422  S-MNIVGCK*VLNSSNNAXXXXXXXXXXXXXMAKGFNQQHGLDFDDAFSLIVMPTTI*IV 246
               N++GCK V      A              AKG+ QQ+G+D+DD FS +V   TI I+
Sbjct: 841  KGRNVIGCKWVYKIKRKADGSLDRYKARLV--AKGYKQQYGIDYDDTFSPVVKHATIRII 898

Query: 245  LTFDIS*EWLLC*L*VK 195
            L+  +S  W LC L V+
Sbjct: 899  LSIAVSRGWSLCQLDVQ 915



 Score = 32.0 bits (71), Expect(2) = 3e-10
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
 Frame = -3

Query: 216  SLLAIS*NHAFPHDVLSE*FYVKQPTWALWIWFTLCTFGNII------MYDLKQVPQAWF 55
            SL  +   +AF H VL E  Y++QP       +   T  N +      +Y LKQ P+AW+
Sbjct: 908  SLCQLDVQNAFLHGVLEEEVYMQQPPG-----YEDSTKLNYVCKLDKALYGLKQAPRAWY 962

Query: 54   DHFSSDL 34
               S+ L
Sbjct: 963  SRLSNKL 969


>gb|AAL31076.1|AC091749_5 putaive copia-like retrotransposon polyprotein, 5'-partial [Oryza
           sativa Japonica Group]
          Length = 491

 Score = 52.4 bits (124), Expect(2) = 3e-10
 Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
 Frame = -1

Query: 482 MMDEFNIVLRNHTWILV-LTSSMNIVGCK*VLNSSNNAXXXXXXXXXXXXXMAKGFNQQH 306
           M  E+  +++N TW LV   S  N++ CK V      A              AKGF Q++
Sbjct: 233 MDSEYTALMKNKTWHLVPAKSDRNVIDCKWVYKIKRKADGSLDRYKARLV--AKGFKQRY 290

Query: 305 GLDFDDAFSLIVMPTTI*IVLTFDIS*EWLL 213
           G+D++D FS +V   TI ++L+  +S  W L
Sbjct: 291 GIDYEDTFSPVVKAATIRVILSIAVSRGWSL 321



 Score = 39.3 bits (90), Expect(2) = 3e-10
 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
 Frame = -3

Query: 216 SLLAIS*NHAFPHDVLSE*FYVKQPTWALWIWFTLCTFGNII------MYDLKQVPQAWF 55
           SL  +  ++AF H +L E  Y++QP     + + + +  N +      +Y LKQ P+ W+
Sbjct: 320 SLRQLDVSNAFLHGILEEEVYMRQP-----LGYEVSSLPNHVCKLDKALYGLKQAPRVWY 374

Query: 54  DHFSSDLLELRFIARK 7
              S+ L EL F A K
Sbjct: 375 SRLSTKLQELGFQASK 390


>gb|ABA97008.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1202

 Score = 54.7 bits (130), Expect(2) = 4e-10
 Identities = 48/161 (29%), Positives = 74/161 (45%), Gaps = 2/161 (1%)
 Frame = -1

Query: 689  HTHTSFAPNDNSFVALTWSILPMVTWSHDGTRLPKIFFSIRHRLSCLFFNSPLPSKTIFF 510
            H   S AP++++ ++    ++   T    G R  KI+     R SC  F S    +T+  
Sbjct: 737  HQPGSSAPSESAQLS---EVMRPKTRLQSGIRKEKIYTDGTVRYSC--FTSSGEPQTLHE 791

Query: 509  YWGFQ*SITMMD-EFNIVLRNHTWILVLTSS-MNIVGCK*VLNSSNNAXXXXXXXXXXXX 336
              G +     MD E+  +++N TW LV +    NI+ CK V      A            
Sbjct: 792  ALGDKNWKEAMDSEYQALMKNKTWHLVPSKKGQNIIDCKWVYKVKQKADGSLDRYKARLV 851

Query: 335  XMAKGFNQQHGLDFDDAFSLIVMPTTI*IVLTFDIS*EWLL 213
              AKGF Q++G+D++D FS +V   TI  +L+  IS  W L
Sbjct: 852  --AKGFKQRYGIDYEDTFSPVVKAATIRTILSIAISRGWTL 890



 Score = 36.2 bits (82), Expect(2) = 4e-10
 Identities = 22/62 (35%), Positives = 32/62 (51%)
 Frame = -3

Query: 192  HAFPHDVLSE*FYVKQPTWALWIWFTLCTFGNIIMYDLKQVPQAWFDHFSSDLLELRFIA 13
            +AF H VL E  +++QP         +C     + Y LKQ P+AW+   S+ L EL F +
Sbjct: 897  NAFLHGVLEEDVFMRQPPGYEQKDGYVCKLDKAL-YGLKQAPRAWYSRLSTKLHELGFKS 955

Query: 12   RK 7
             K
Sbjct: 956  SK 957


>gb|AAP53968.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 932

 Score = 53.5 bits (127), Expect(2) = 4e-10
 Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
 Frame = -1

Query: 488 ITMMDEFNIVLRNHTWILVL-TSSMNIVGCK*VLNSSNNAXXXXXXXXXXXXXMAKGFNQ 312
           + M  E++  + N TW LV  T   NI+ CK +      A              AKGF Q
Sbjct: 440 LAMEQEYSAFMSNKTWHLVPPTQGKNIIDCKWMYKIKRKADGSIDRYKARLV--AKGFKQ 497

Query: 311 QHGLDFDDAFSLIVMPTTI*IVLTFDIS*EWLL 213
           ++G+D++D FSL+V   TI ++L+  +S  W L
Sbjct: 498 RYGIDYEDTFSLVVKAATIRLILSIAVSKGWSL 530



 Score = 37.4 bits (85), Expect(2) = 4e-10
 Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
 Frame = -3

Query: 216 SLLAIS*NHAFPHDVLSE*FYVKQPTWALWIWFT-------LCTFGNIIMYDLKQVPQAW 58
           SL  +   +AF H  L E  Y++QP       F        LC     + Y LKQ P+AW
Sbjct: 529 SLRQLDVQNAFLHGYLEEEVYMRQPPG-----FENKGQPNYLCKLDKAL-YGLKQAPRAW 582

Query: 57  FDHFSSDLLELRFIARK 7
           +   S+ L EL FI+ K
Sbjct: 583 YSRLSTKLQELGFISSK 599


>dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol polyprotein [Oryza
            sativa Japonica Group]
          Length = 1448

 Score = 57.0 bits (136), Expect(2) = 5e-10
 Identities = 33/91 (36%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
 Frame = -1

Query: 482  MMDEFNIVLRNHTWILV-LTSSMNIVGCK*VLNSSNNAXXXXXXXXXXXXXMAKGFNQQH 306
            M  E+N +++N TW LV      NI+GCK V      A              AKGF Q++
Sbjct: 956  METEYNALIKNDTWHLVPYEKGQNIIGCKWVYKVKRKADGTLDRYKTRLI--AKGFKQRY 1013

Query: 305  GLDFDDAFSLIVMPTTI*IVLTFDIS*EWLL 213
            G+D++D FS +V   TI I+L+  +S  W L
Sbjct: 1014 GIDYEDTFSPVVKAATIRIILSIAVSRGWSL 1044



 Score = 33.5 bits (75), Expect(2) = 5e-10
 Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
 Frame = -3

Query: 216  SLLAIS*NHAFPHDVLSE*FYVKQPTWALWIWFT-------LCTFGNIIMYDLKQVPQAW 58
            SL  +   + F H  L E  Y++QP       F        +C   N  +Y LKQ P+AW
Sbjct: 1043 SLRQLDVQNDFLHGFLEEEVYMQQPPG-----FESSSKPDYVCKL-NKALYGLKQAPRAW 1096

Query: 57   FDHFSSDLLELRFIARK 7
            +   S  L EL F A K
Sbjct: 1097 YSRLSKKLTELGFEASK 1113


>gb|EMT21953.1| ABC transporter C family member 10 [Aegilops tauschii]
          Length = 3041

 Score = 47.4 bits (111), Expect(2) = 7e-10
 Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
 Frame = -1

Query: 482  MMDEFNIVLRNHTWILVLTS-SMNIVGCK*VLNSSNNAXXXXXXXXXXXXXMAKGFNQQH 306
            M +E+  + +N TW LV      N++ CK V      +              AKGF Q++
Sbjct: 2291 MEEEYMTLQKNKTWHLVSPRRGKNLIDCKWVYRIKRKSDGTIDRYKARLV--AKGFKQRY 2348

Query: 305  GLDFDDAFSLIVMPTTI*IVLTFDIS*EWLL 213
            G+D++D FS +V   TI +VL+  +S  W L
Sbjct: 2349 GIDYEDTFSPVVKAATIRLVLSIAVSRGWSL 2379



 Score = 42.7 bits (99), Expect(2) = 7e-10
 Identities = 28/72 (38%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
 Frame = -3

Query: 216  SLLAIS*NHAFPHDVLSE*FYVKQPTWA--LWIWFTLCTFGNIIMYDLKQVPQAWFDHFS 43
            SL  +   +AF H VL E  Y+KQP         F +C   N + Y LKQ P+AW+ H S
Sbjct: 2378 SLRQLDVQNAFLHGVLKEEVYMKQPPGFENKDKPFHVCKLDNAL-YGLKQAPRAWYSHLS 2436

Query: 42   SDLLELRFIARK 7
              L  L F+  K
Sbjct: 2437 QKLQALGFVPSK 2448


>emb|CAE04319.3| OSJNBb0016D16.10 [Oryza sativa Japonica Group]
          Length = 950

 Score = 57.0 bits (136), Expect(2) = 7e-10
 Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
 Frame = -1

Query: 482 MMDEFNIVLRNHTWILV-LTSSMNIVGCK*VLNSSNNAXXXXXXXXXXXXXMAKGFNQQH 306
           M  E++ +++N+TW LV      NI+GCK V      A              AKGF Q++
Sbjct: 21  MQAEYDALIKNNTWHLVPYEKGQNIIGCKWVYKIKRKADGTLDRYKARLV--AKGFKQRY 78

Query: 305 GLDFDDAFSLIVMPTTI*IVLTFDIS*EWLL 213
           G+D++D FS +V   TI I+L+  IS  W L
Sbjct: 79  GIDYEDTFSSVVKAATIRIILSIAISRGWSL 109



 Score = 33.1 bits (74), Expect(2) = 7e-10
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
 Frame = -3

Query: 216 SLLAIS*NHAFPHDVLSE*FYVKQPTWALWIWFTLCTFGNII------MYDLKQVPQAWF 55
           SL  +   + F H  L E  Y++QP       F   +  N +      +Y LKQ  +AW+
Sbjct: 108 SLRQLDVQNVFLHGFLQEEVYMQQPPG-----FESSSKPNYVCKLDKALYGLKQATRAWY 162

Query: 54  DHFSSDLLELRFIARK 7
              S  L+EL F A K
Sbjct: 163 SRLSKKLVELGFEASK 178


>gb|ACV42639.1| gag/pol [Oryza sativa Japonica Group]
          Length = 1448

 Score = 56.6 bits (135), Expect(2) = 9e-10
 Identities = 33/91 (36%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
 Frame = -1

Query: 482  MMDEFNIVLRNHTWILV-LTSSMNIVGCK*VLNSSNNAXXXXXXXXXXXXXMAKGFNQQH 306
            M  E+N +++N TW LV      NI+GCK V      A              AKGF Q++
Sbjct: 956  METEYNALIKNDTWHLVPYEKGQNIIGCKWVYKVKRKADGTLDRYKTRLI--AKGFKQRY 1013

Query: 305  GLDFDDAFSLIVMPTTI*IVLTFDIS*EWLL 213
            G+D++D FS +V   TI I+L+  +S  W L
Sbjct: 1014 GIDYEDTFSPVVKAATIRIILSIAVSRGWNL 1044



 Score = 33.1 bits (74), Expect(2) = 9e-10
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -3

Query: 99   NIIMYDLKQVPQAWFDHFSSDLLELRFIARK 7
            N  +Y LKQ P+AW+   S  L EL F A K
Sbjct: 1083 NKALYGLKQAPRAWYSRLSKKLTELGFEASK 1113


>gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|46981313|gb|AAT07631.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1431

 Score = 53.5 bits (127), Expect(2) = 9e-10
 Identities = 47/161 (29%), Positives = 74/161 (45%), Gaps = 2/161 (1%)
 Frame = -1

Query: 689  HTHTSFAPNDNSFVALTWSILPMVTWSHDGTRLPKIFFSIRHRLSCLFFNSPLPSKTIFF 510
            H   S AP++++ ++    ++   T    G R  KI+     R SC  F S    +T+  
Sbjct: 875  HQPGSSAPSESAQLS---EVIRPKTRLQSGIRKEKIYTDGTVRYSC--FTSSGEPQTLHE 929

Query: 509  YWGFQ*SITMMD-EFNIVLRNHTWILVLTSS-MNIVGCK*VLNSSNNAXXXXXXXXXXXX 336
              G +     MD E+  +++N TW LV +    NI+ CK V      A            
Sbjct: 930  ALGDKNWKEAMDSEYQALMKNKTWHLVPSKKGQNIIDCKWVYKVKRKADGSLDRYKARVV 989

Query: 335  XMAKGFNQQHGLDFDDAFSLIVMPTTI*IVLTFDIS*EWLL 213
              AKGF Q++G+D++D F+ +V   TI  +L+  IS  W L
Sbjct: 990  --AKGFKQRYGIDYEDTFNPVVKAATIRTILSIAISRGWTL 1028



 Score = 36.2 bits (82), Expect(2) = 9e-10
 Identities = 22/62 (35%), Positives = 32/62 (51%)
 Frame = -3

Query: 192  HAFPHDVLSE*FYVKQPTWALWIWFTLCTFGNIIMYDLKQVPQAWFDHFSSDLLELRFIA 13
            +AF H VL E  +++QP         +C     + Y LKQ P+AW+   S+ L EL F +
Sbjct: 1035 NAFLHGVLEEDVFMRQPPGYEQKDGYVCKLDKAL-YGLKQAPRAWYSRLSTKLHELGFKS 1093

Query: 12   RK 7
             K
Sbjct: 1094 SK 1095


>gb|AAR88589.1| putative copia-like retrotransposon protein [Oryza sativa Japonica
            Group]
          Length = 1399

 Score = 49.3 bits (116), Expect(2) = 1e-09
 Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
 Frame = -1

Query: 473  EFNIVLRNHTWILVLTSS-MNIVGCK*VLNSSNNAXXXXXXXXXXXXXMAKGFNQQHGLD 297
            E+  ++ N TW LV      N++ CK V      A              AKGF Q++G+D
Sbjct: 904  EYMALIENKTWHLVPPQKGRNVIDCKWVYKVKRKADGSLDRYKARLV--AKGFKQRYGID 961

Query: 296  FDDAFSLIVMPTTI*IVLTFDIS*EWLLC*L*VK 195
            ++D FS +V   TI IVL+  +S  W L  L VK
Sbjct: 962  YEDTFSPVVKAATIRIVLSLAVSRGWSLRQLDVK 995



 Score = 40.0 bits (92), Expect(2) = 1e-09
 Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
 Frame = -3

Query: 216  SLLAIS*NHAFPHDVLSE*FYVKQPTWALWIWFTLCTFGNII------MYDLKQVPQAWF 55
            SL  +   +AF H VL E  Y+KQP       +   +  N +      +Y LKQ P+AW+
Sbjct: 988  SLRQLDVKNAFLHGVLEEEVYMKQPPG-----YEKKSMPNYVCKLDKALYGLKQAPRAWY 1042

Query: 54   DHFSSDLLELRFIARK 7
               S+ L EL F+  K
Sbjct: 1043 SRLSTKLSELGFVPSK 1058


>gb|ABF95616.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1241

 Score = 49.3 bits (116), Expect(2) = 1e-09
 Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
 Frame = -1

Query: 473  EFNIVLRNHTWILVLTSS-MNIVGCK*VLNSSNNAXXXXXXXXXXXXXMAKGFNQQHGLD 297
            E+  ++ N TW LV      N++ CK V      A              AKGF Q++G+D
Sbjct: 850  EYMALIENKTWHLVPPQKGRNVIDCKWVYKVKRKADGSLDRYKARLV--AKGFKQRYGID 907

Query: 296  FDDAFSLIVMPTTI*IVLTFDIS*EWLLC*L*VK 195
            ++D FS +V   TI IVL+  +S  W L  L VK
Sbjct: 908  YEDTFSPVVKAATIRIVLSLAVSRGWSLRQLDVK 941



 Score = 40.0 bits (92), Expect(2) = 1e-09
 Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
 Frame = -3

Query: 216  SLLAIS*NHAFPHDVLSE*FYVKQPTWALWIWFTLCTFGNII------MYDLKQVPQAWF 55
            SL  +   +AF H VL E  Y+KQP       +   +  N +      +Y LKQ P+AW+
Sbjct: 934  SLRQLDVKNAFLHGVLEEEVYMKQPPG-----YEKKSMPNYVCKLDKALYGLKQAPRAWY 988

Query: 54   DHFSSDLLELRFIARK 7
               S+ L EL F+  K
Sbjct: 989  SRLSTKLSELGFVPSK 1004