BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia23_contig00027608
         (2140 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD ...   563   e-157
emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]   531   e-148
ref|XP_007222923.1| hypothetical protein PRUPE_ppa003696mg [Prun...   521   e-145
ref|XP_002308586.1| hypothetical protein POPTR_0006s25090g [Popu...   518   e-144
ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [...   513   e-142
ref|XP_004291147.1| PREDICTED: RNA polymerase sigma factor sigC-...   510   e-142
ref|XP_006450763.1| hypothetical protein CICLE_v10007968mg [Citr...   506   e-140
ref|XP_007012219.1| RNApolymerase sigma-subunit C, putative [The...   502   e-139
ref|XP_006475980.1| PREDICTED: RNA polymerase sigma factor sigC-...   502   e-139
ref|XP_006853783.1| hypothetical protein AMTR_s00056p00209700 [A...   490   e-136
ref|XP_004148429.1| PREDICTED: RNA polymerase sigma factor sigC-...   470   e-129
ref|XP_006355305.1| PREDICTED: RNA polymerase sigma factor sigC-...   468   e-129
emb|CAD20832.1| sigma factor [Spinacia oleracea]                      466   e-128
ref|XP_004245130.1| PREDICTED: RNA polymerase sigma factor sigC-...   456   e-125
ref|XP_003551127.1| PREDICTED: RNA polymerase sigma factor sigC ...   444   e-122
ref|XP_004498453.1| PREDICTED: RNA polymerase sigma factor sigC-...   438   e-120
gb|EYU20393.1| hypothetical protein MIMGU_mgv1a018845mg [Mimulus...   426   e-116
ref|XP_002877947.1| predicted protein [Arabidopsis lyrata subsp....   426   e-116
dbj|BAA22215.1| plastid RNA polymerase sigma-subunit [Arabidopsi...   424   e-115
ref|NP_190960.1| RNA polymerase sigma-subunit C [Arabidopsis tha...   422   e-115

>ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
            gi|296081598|emb|CBI20603.3| unnamed protein product
            [Vitis vinifera]
          Length = 561

 Score =  563 bits (1450), Expect = e-157
 Identities = 299/561 (53%), Positives = 383/561 (68%), Gaps = 6/561 (1%)
 Frame = -1

Query: 2029 MGFGFMLDSKWVFPIQSSFFTNSPTKQYSSSVRGKEASYESPRMSILSVIPEESEVLYKD 1850
            MG GF L+ KW FPI     TNSP++  +SSV+GKEAS++S R S  SV  E+ E LYKD
Sbjct: 1    MGMGFRLNLKWDFPISCPTLTNSPSRLCTSSVQGKEASFDSTRFSFPSVTSEDCESLYKD 60

Query: 1849 SLKAYXXXXXSLQIIENQSGDKEEIKMKIGRGSHRTLYNPIDDTSVSIQDDTSTSYPMLQ 1670
              K +     +LQ  EN     E +KMKIG+ SH  L+  ++ +   I +D S S   LQ
Sbjct: 61   PFKPFACSSGALQTFENDYSAMEAMKMKIGKCSHGDLFKIVNASQAPIGEDISASVAGLQ 120

Query: 1669 VNKTSHFSSLMENIEKIDEIFVDADVVKLEKDILIQLGKLGAIKLFHVCLSRTLGLKEPT 1490
             +K S FS L+EN++ ++E+F D+++V+LE+DI++QLG+LGA+KLF +CLSRTL      
Sbjct: 121  ASKASQFSLLLENLDILEEMFADSNMVRLERDIMVQLGRLGALKLFQICLSRTLKTSTSF 180

Query: 1489 LSTPIPITELPRDSPINGPIDDKVGNIIVXXXXXXXXXXXXXRALENXXXXXXXXXXXXX 1310
                 P TE  R+   NG +DD +  ++V             RALE              
Sbjct: 181  DLFSAP-TEHIRECQTNGTVDDHLDKVVVRSGKKEERKSKRERALEKADNIYAFPLPSKT 239

Query: 1309 XXKVPRRENPS------NSMTRRLIIAKKESKMSIGVKEAANLERIRTSLEAETGRVISF 1148
              K P R + S      NS  +RL+ AK E++MS GVK  ANLERIR +LE E G V S 
Sbjct: 240  IRKGPGRPSVSTVKRTLNSRRKRLMNAKNEAEMSKGVKLVANLERIRATLEEEIGHVASL 299

Query: 1147 SCWAEAAGVDEKVLQQRLHFGWYCRDKLLRSTRSLVFYIARNYRRLGISLEDLLQAGNVG 968
            S WAEAAGVD+KVLQQ+L FGWYCRD+LLRST SLV YIARNYR +G++ ED+LQAGN+G
Sbjct: 300  SNWAEAAGVDKKVLQQQLQFGWYCRDELLRSTHSLVLYIARNYRGMGVAFEDILQAGNLG 359

Query: 967  VLQGAERFDHTRGYRFSTYIQYWIRKSMSTLVARHSRGIHIPVSLNSVMNQIRKARRSLY 788
            VLQGAERFDHT+GYRFSTY+QYWIRKSMSTLVARH+RG+ IP +LN  + QI+KAR++LY
Sbjct: 360  VLQGAERFDHTKGYRFSTYVQYWIRKSMSTLVARHARGVKIPFTLNRAIGQIQKARKALY 419

Query: 787  NIHGRYPNDDEISRFTGVSLAKIRLACKCPRIVGSIDQRMGDNLSVKFMEFTSDKSIKTP 608
              HGRYP+D+EI++FTG+SLAKIR A  C R+VGS DQ   D      +EFT D SIK+P
Sbjct: 420  KSHGRYPDDNEIAKFTGLSLAKIRSAGNCLRVVGSTDQSFQDCWGATILEFTPDTSIKSP 479

Query: 607  EEMVMMQHMRKDIYELLQGLQPRERQVLILRYGLQDGRSKSLEEIGRVFKCTKEWIRKIE 428
            EE  M Q  RKDI+ LL+GL PRERQ+L+LRYG  + + KSLEEIGR F  +KEWIRK+E
Sbjct: 480  EEGFMQQCKRKDIHNLLKGLDPRERQILVLRYGFGEQQRKSLEEIGRRFNVSKEWIRKLE 539

Query: 427  KSALTKVRKEEVQRNLSHYLN 365
            K+AL  +R EE+ +NL HY++
Sbjct: 540  KTALANLRDEEICQNLRHYVD 560


>emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]
          Length = 611

 Score =  531 bits (1368), Expect = e-148
 Identities = 282/530 (53%), Positives = 363/530 (68%), Gaps = 6/530 (1%)
 Frame = -1

Query: 1936 VRGKEASYESPRMSILSVIPEESEVLYKDSLKAYXXXXXSLQIIENQSGDKEEIKMKIGR 1757
            ++GKEAS++S R S  SV  E+ E LYKD  K +     +LQ  EN     E +KMKIG+
Sbjct: 82   IQGKEASFDSTRFSFPSVTSEDCESLYKDPFKPFACSSGALQTFENDYSAMEAMKMKIGK 141

Query: 1756 GSHRTLYNPIDDTSVSIQDDTSTSYPMLQVNKTSHFSSLMENIEKIDEIFVDADVVKLEK 1577
             SH  L+  ++ +   I +D S S   LQ +K S FS L+EN++ ++E+F D+++V+LE+
Sbjct: 142  CSHGDLFKIVNASQAPIGEDISASVAGLQASKASQFSLLLENLDILEEMFADSNMVRLER 201

Query: 1576 DILIQLGKLGAIKLFHVCLSRTLGLKEPTLSTPIPITELPRDSPINGPIDDKVGNIIVXX 1397
            DI++QLG+LGA+KLF +CLSRTL           P TE  R+   NG +DD +  ++V  
Sbjct: 202  DIMVQLGRLGALKLFQICLSRTLKTSTSFDLFSAP-TEHIRECQTNGTVDDHLDKVVVRS 260

Query: 1396 XXXXXXXXXXXRALENXXXXXXXXXXXXXXXKVPRRENPS------NSMTRRLIIAKKES 1235
                       RALE                K P R + S      NS  +RL+ AK E+
Sbjct: 261  GKKEERKSKRERALEKADNIYAFPLPSKTIRKGPGRPSVSTVKRTLNSRRKRLMNAKNEA 320

Query: 1234 KMSIGVKEAANLERIRTSLEAETGRVISFSCWAEAAGVDEKVLQQRLHFGWYCRDKLLRS 1055
            +MS GVK  ANLERIR +LE E G V S S WAEAAGVD+KVLQQ+L FGWYCRD+LLRS
Sbjct: 321  EMSKGVKLVANLERIRATLEEEIGHVASLSNWAEAAGVDKKVLQQQLQFGWYCRDELLRS 380

Query: 1054 TRSLVFYIARNYRRLGISLEDLLQAGNVGVLQGAERFDHTRGYRFSTYIQYWIRKSMSTL 875
            T SLV YIARNYR +G++ ED+LQAGN+GVLQGAERFDHT+GYRFSTY+QYWIRKSMSTL
Sbjct: 381  THSLVLYIARNYRGMGVAFEDILQAGNLGVLQGAERFDHTKGYRFSTYVQYWIRKSMSTL 440

Query: 874  VARHSRGIHIPVSLNSVMNQIRKARRSLYNIHGRYPNDDEISRFTGVSLAKIRLACKCPR 695
            VARH+RG+ IP +LN  + QI+KAR++LY  HGRYP+D+EI++FTG+SLAKIR A  C R
Sbjct: 441  VARHARGVKIPFTLNRAIGQIQKARKALYKSHGRYPDDNEIAKFTGLSLAKIRSAGNCLR 500

Query: 694  IVGSIDQRMGDNLSVKFMEFTSDKSIKTPEEMVMMQHMRKDIYELLQGLQPRERQVLILR 515
            +VGS DQ   D      +EFT D SIK+PEE  M Q  RKDI+ LL+GL PRERQ+L+LR
Sbjct: 501  VVGSTDQSFQDCWGATILEFTPDTSIKSPEEGFMQQCKRKDIHNLLKGLDPRERQILVLR 560

Query: 514  YGLQDGRSKSLEEIGRVFKCTKEWIRKIEKSALTKVRKEEVQRNLSHYLN 365
            YG  + + KSLEEIGR F  +KEWIRK+EK+AL  +R EE+ +NL HY++
Sbjct: 561  YGFGEQQRKSLEEIGRRFNVSKEWIRKLEKTALANLRDEEICQNLRHYVD 610


>ref|XP_007222923.1| hypothetical protein PRUPE_ppa003696mg [Prunus persica]
            gi|462419859|gb|EMJ24122.1| hypothetical protein
            PRUPE_ppa003696mg [Prunus persica]
          Length = 555

 Score =  521 bits (1343), Expect = e-145
 Identities = 281/560 (50%), Positives = 376/560 (67%), Gaps = 5/560 (0%)
 Frame = -1

Query: 2029 MGFGFMLDSKWVFPIQSSFF-TNSPTKQYSSSVRGKEASYESPRMSILSVIPEESEVLYK 1853
            MG GF L+ K  FP+ SS + T SP+K  S+SVRG+E S+ S R+S LSVI EE E   K
Sbjct: 1    MGLGFRLNLKCGFPVHSSHWQTTSPSKISSTSVRGREGSFNSARLSFLSVISEEGEASSK 60

Query: 1852 DSLKAYXXXXXSLQIIENQSGDKEEIKMKIGRGSHRTLYNPIDDTSVSIQDDTSTSYPML 1673
            D LK Y     S QI+E+   + EE+K      + R +     D  + + +    S   L
Sbjct: 61   DPLKVYTFPSASPQILEDGVSELEEVKT-----AFRRVPKSFSDNQMPVAEGKFISSKGL 115

Query: 1672 QVNKTSHFSSLMENIEKIDEIFVDADVVKLEKDILIQLGKLGAIKLFHVCLSRTLGLKEP 1493
            +    SHFS L++N+  ++E F  +DV+KLEK+IL+QL +LGA+KLF +CLSRTL     
Sbjct: 116  EACTASHFSLLLQNLNVLEETFATSDVLKLEKEILLQLARLGALKLFDICLSRTLKTSSF 175

Query: 1492 TLSTPIPITELPRDSPINGPIDDKVGNIIVXXXXXXXXXXXXXRA----LENXXXXXXXX 1325
               + IP   +  +  +    D+ VG IIV              +    + +        
Sbjct: 176  LDLSDIPTVPV-EEGKMERKEDNNVGEIIVRSGKKEERRSRKRTSDNAIVSSNSLPPKTI 234

Query: 1324 XXXXXXXKVPRRENPSNSMTRRLIIAKKESKMSIGVKEAANLERIRTSLEAETGRVISFS 1145
                    +   +  SN  +RRL I+K E++MSIGVK  A+LERI+ +LE ETG+V +  
Sbjct: 235  WKGLKKPTLSSGKRASNYRSRRLTISKNEAEMSIGVKVIADLERIKETLEKETGKVATLR 294

Query: 1144 CWAEAAGVDEKVLQQRLHFGWYCRDKLLRSTRSLVFYIARNYRRLGISLEDLLQAGNVGV 965
            CWAEAAGV EKVL Q L FGWYC+D+L+RSTRSLV Y+ARNYR LG++L+DL+QAGN+G+
Sbjct: 295  CWAEAAGVHEKVLLQHLRFGWYCQDELIRSTRSLVLYLARNYRGLGVALDDLMQAGNLGL 354

Query: 964  LQGAERFDHTRGYRFSTYIQYWIRKSMSTLVARHSRGIHIPVSLNSVMNQIRKARRSLYN 785
            LQGAERFDH+RGYRFSTY+QYWIRKSMS LVA+H+RG+ IP +L+  +NQI+KAR++ YN
Sbjct: 355  LQGAERFDHSRGYRFSTYVQYWIRKSMSRLVAQHARGVQIPFTLSKAINQIQKARKANYN 414

Query: 784  IHGRYPNDDEISRFTGVSLAKIRLACKCPRIVGSIDQRMGDNLSVKFMEFTSDKSIKTPE 605
             H +YP+D+EI++ TG+SLA+IR A  C R+VGS+D +M ++    +MEFT D S+K+PE
Sbjct: 415  SHMKYPDDEEIAKITGLSLARIRSASTCLRVVGSVDHKMWESSDGTYMEFTPDTSLKSPE 474

Query: 604  EMVMMQHMRKDIYELLQGLQPRERQVLILRYGLQDGRSKSLEEIGRVFKCTKEWIRKIEK 425
            E VM QHM+KDI++LL+GL  RERQVL+LRYGL +   KSLEEIGR+F  +KEWIRKIEK
Sbjct: 475  ETVMRQHMKKDIHDLLKGLNLRERQVLVLRYGLNNYDPKSLEEIGRLFHVSKEWIRKIEK 534

Query: 424  SALTKVRKEEVQRNLSHYLN 365
             AL K+R EE  + LSHYLN
Sbjct: 535  KALMKLRVEESHKYLSHYLN 554


>ref|XP_002308586.1| hypothetical protein POPTR_0006s25090g [Populus trichocarpa]
            gi|222854562|gb|EEE92109.1| hypothetical protein
            POPTR_0006s25090g [Populus trichocarpa]
          Length = 559

 Score =  518 bits (1333), Expect = e-144
 Identities = 270/559 (48%), Positives = 383/559 (68%), Gaps = 5/559 (0%)
 Frame = -1

Query: 2029 MGFGFMLDSKWVFPIQSSFFTNSPTKQYSSSVRGKEASYESPRMSILSVIPEESEVLYKD 1850
            MG GF L  KW  P+QS   TNS +   S S RG EAS    R+S LSV+ EE ++L K 
Sbjct: 1    MGVGFRLTPKWGSPMQSHSATNSTSMFSSFSARGMEASVNQARLSFLSVVSEEGDILNKH 60

Query: 1849 SLKAYXXXXXSLQIIENQSGDKEEIKMKIGRGSHRTLYNPIDDTSVSIQDDTSTSYPMLQ 1670
            S K++     + Q +EN     E +KM + + SH ++ N + +  VS++++ STS+  L+
Sbjct: 61   SFKSFACSSAA-QNVENDCLQMERLKMNVDKTSHVSINNMMGNDKVSVEEEISTSHTRLR 119

Query: 1669 VNKTSHFSSLMENIEKIDEIFVDADVVKLEKDILIQLGKLGAIKLFHVCLSRTLGLKEPT 1490
               TS  S L++N++ ++++  D D +KLE+DIL+QLG+LGA++ F+ CLSRTL      
Sbjct: 120  ERMTSRISFLLDNLDTLEKLVADLDALKLERDILLQLGRLGALEFFNACLSRTLQTSNVL 179

Query: 1489 LSTPIPITELPRDSPINGPIDDKVGNIIVXXXXXXXXXXXXXRALENXXXXXXXXXXXXX 1310
              + +P TE   +S  +G + D  G  +V             RA  +             
Sbjct: 180  DLSAVP-TENTGESKTDGMLGDLTGKTVVRTGKKEERKFRRERAASDNGKKTTSLSLPSK 238

Query: 1309 XXK--VPRR---ENPSNSMTRRLIIAKKESKMSIGVKEAANLERIRTSLEAETGRVISFS 1145
              +  +P+    +  S+S +RR +IA+ E+KM+ GVK A++LERIRT+LE ETG+V+S S
Sbjct: 239  TVQNNLPKPTFVKRTSSSSSRRSLIARNEAKMTRGVKVASDLERIRTTLEEETGQVVSLS 298

Query: 1144 CWAEAAGVDEKVLQQRLHFGWYCRDKLLRSTRSLVFYIARNYRRLGISLEDLLQAGNVGV 965
            CWAEA G+D+KVLQQ+L FGWYCRD+L+++T SLV YIARNYR +GI++EDL+QAGN+G+
Sbjct: 299  CWAEATGLDKKVLQQQLQFGWYCRDELIKNTHSLVLYIARNYRGMGIAMEDLIQAGNLGL 358

Query: 964  LQGAERFDHTRGYRFSTYIQYWIRKSMSTLVARHSRGIHIPVSLNSVMNQIRKARRSLYN 785
            LQGAERFD TRGYRFSTY+QYWIRKSM  +V RH+RGI IP +L+  +N+I+KAR++L N
Sbjct: 359  LQGAERFDPTRGYRFSTYVQYWIRKSMLKIVERHARGIQIPYALSRSINKIQKARKALSN 418

Query: 784  IHGRYPNDDEISRFTGVSLAKIRLACKCPRIVGSIDQRMGDNLSVKFMEFTSDKSIKTPE 605
             HGRYP+D E+++FTG+SLAKI  A KC R+V S+DQ++G+    K+ EF  D SI+ PE
Sbjct: 419  SHGRYPDDWEVAKFTGLSLAKIESAQKCLRVVASLDQKIGEGHYAKYSEFIPDMSIQNPE 478

Query: 604  EMVMMQHMRKDIYELLQGLQPRERQVLILRYGLQDGRSKSLEEIGRVFKCTKEWIRKIEK 425
            E VM QHMR++IY+LL+GL  RE+QV++LRYG +D + KSL EIGR+F+ +KE +RKIEK
Sbjct: 479  EAVMRQHMREEIYDLLRGLDSREKQVMVLRYGFKDNQPKSLAEIGRLFRVSKERVRKIEK 538

Query: 424  SALTKVRKEEVQRNLSHYL 368
              + K+R E ++RNLS Y+
Sbjct: 539  KIMIKLRDEGIRRNLSRYM 557


>ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
            gi|223544309|gb|EEF45830.1| RNA polymerase sigma factor
            rpoD, putative [Ricinus communis]
          Length = 560

 Score =  513 bits (1321), Expect = e-142
 Identities = 282/566 (49%), Positives = 381/566 (67%), Gaps = 11/566 (1%)
 Frame = -1

Query: 2029 MGFGFMLDSKWVFPIQSSFFTNSPTKQYSSS----VRGKEASYESPRMSILSVIPEESEV 1862
            MGFGF L+ K  FP  S    NSP++  SS     VRG+EA+    R+S LSVI EE ++
Sbjct: 1    MGFGFRLNLKLDFPFHSP---NSPSRLSSSPSSSFVRGREATSYQSRLSFLSVISEEGDI 57

Query: 1861 LYKDSLKAYXXXXXSLQIIENQSGDKEEIKMKIGRGSHRTLYNPIDDTSVSIQDDTSTSY 1682
             ++D LK Y      +Q +EN+    E  K+  G+ SH  L N I D  VS+++D   S 
Sbjct: 58   AHRDPLKTYAYSYA-VQTVENEHSQGEGFKVNFGKRSHFGL-NIIGDAEVSLKEDIFVS- 114

Query: 1681 PMLQVNKTSHFSSLMENIEKIDEIFVDADVVKLEKDILIQLGKLGAIKLFHVCLSRTLGL 1502
            P     +TS FS L+EN+  +++ F D+D  KLE+DIL+QLGKLGA+KLF+ CL+RTL  
Sbjct: 115  PSSTKERTSRFSLLLENLNILEQSFADSDASKLEEDILLQLGKLGALKLFNTCLTRTLET 174

Query: 1501 KEPTLSTPIPITELPRDSPINGPIDDKVGNIIVXXXXXXXXXXXXXRALE-------NXX 1343
                L      TE+  +  ING   +    ++V             RA         +  
Sbjct: 175  TN-VLEVSDVHTEIIGECNINGTSINNQIKVVVHTAKKEERKSRRERASARKGHKSPSLP 233

Query: 1342 XXXXXXXXXXXXXKVPRRENPSNSMTRRLIIAKKESKMSIGVKEAANLERIRTSLEAETG 1163
                          V   +  S S +RRLIIA+ E++M+ G+K  A+LE+IRT+LE ET 
Sbjct: 234  LPSRPIQSGSEKPTVSSGKKASKSKSRRLIIARNEAEMARGIKVLADLEKIRTTLEEETE 293

Query: 1162 RVISFSCWAEAAGVDEKVLQQRLHFGWYCRDKLLRSTRSLVFYIARNYRRLGISLEDLLQ 983
            RV+S SCWAEAAG+D KVLQQ+L FGWYCRD+L++STRSLV Y ARNYR  GI+LEDLLQ
Sbjct: 294  RVVSLSCWAEAAGLDVKVLQQQLSFGWYCRDELIKSTRSLVLYFARNYRGTGIALEDLLQ 353

Query: 982  AGNVGVLQGAERFDHTRGYRFSTYIQYWIRKSMSTLVARHSRGIHIPVSLNSVMNQIRKA 803
            AGN+GVL+GAERFDHTRGYRFSTY+QYWIRKSMS +V+R +RGI IP +L+  + QI+KA
Sbjct: 354  AGNLGVLEGAERFDHTRGYRFSTYVQYWIRKSMSKIVSRLARGIQIPCTLSRAIYQIQKA 413

Query: 802  RRSLYNIHGRYPNDDEISRFTGVSLAKIRLACKCPRIVGSIDQRMGDNLSVKFMEFTSDK 623
            R++L   +G+YP+DDEI+++TG+SLAKI  A +C R+VGSIDQ++G++L+ K++EF  D 
Sbjct: 414  RKALTTSNGKYPDDDEIAKYTGLSLAKIESASRCLRVVGSIDQKIGESLNAKYLEFLPDT 473

Query: 622  SIKTPEEMVMMQHMRKDIYELLQGLQPRERQVLILRYGLQDGRSKSLEEIGRVFKCTKEW 443
            S+++PEE+VM QHM +D++ LL+ L  RERQVLILR+GL D + KSLEEIGR F  +KEW
Sbjct: 474  SVQSPEEVVMRQHMIQDMHNLLRSLDSRERQVLILRFGLNDYQPKSLEEIGRHFHVSKEW 533

Query: 442  IRKIEKSALTKVRKEEVQRNLSHYLN 365
            +R++EK  +T++R EE  RNL HY+N
Sbjct: 534  VRRLEKRVMTRLRNEETCRNLRHYIN 559


>ref|XP_004291147.1| PREDICTED: RNA polymerase sigma factor sigC-like [Fragaria vesca
            subsp. vesca]
          Length = 545

 Score =  510 bits (1314), Expect = e-142
 Identities = 282/561 (50%), Positives = 382/561 (68%), Gaps = 7/561 (1%)
 Frame = -1

Query: 2029 MGFGFMLDSKWVFPIQSSFF-TNSPTKQYSSSVRGKEASYESPRMSILSVIPEESEVLYK 1853
            MG GF L+ K  FPI +S + TNSP+K  SSSVRG+E S+ S  +S LSVI EE E   K
Sbjct: 1    MGLGFRLNLKCGFPIHNSHWQTNSPSKLPSSSVRGREGSFSSAGLSFLSVISEECETSSK 60

Query: 1852 DSLKAYXXXXXSLQIIENQSGDKEEIKMKIGRGSHRTLYNPIDDTSVSIQDDTSTSYPML 1673
            D LK Y     S Q++++   + EE KM   R S     N IDD   S            
Sbjct: 61   DPLKVYTCPSASPQLLDDGLSEMEE-KMNPRRMSKSGSANMIDDKEYSFMSSAGL----- 114

Query: 1672 QVNKTSHFSSLMENIEKIDEIFVDADVVKLEKDILIQLGKLGAIKLFHVCLSRTLGLKEP 1493
               +TSH++ L++N+  ++E F D+ V KLEK+IL+QLG+LGA+KLF +CLSRTL     
Sbjct: 115  ---RTSHYTLLLQNLNVLEETFADSGVSKLEKEILLQLGRLGALKLFEICLSRTL----- 166

Query: 1492 TLSTPIPITELPRDSPINGPIDDKVGNIIVXXXXXXXXXXXXXRALENXXXXXXXXXXXX 1313
              S+ + ++++P + PI     ++    IV              + ++            
Sbjct: 167  KTSSFLDLSDIPTE-PIEKHKTERKN--IVRSGKKEEQKSRKRTSYDSKKFSGTLPVKQM 223

Query: 1312 XXXKVPRRENPS------NSMTRRLIIAKKESKMSIGVKEAANLERIRTSLEAETGRVIS 1151
                  ++ NPS      NS +RRL++AK E++MS+GVK  A+LER++ +LE ETG+V +
Sbjct: 224  REGF--KKPNPSSVRRASNSRSRRLMMAKNEAEMSVGVKVIADLERLKVTLEKETGKVPT 281

Query: 1150 FSCWAEAAGVDEKVLQQRLHFGWYCRDKLLRSTRSLVFYIARNYRRLGISLEDLLQAGNV 971
              CWAEAAGVDEKVLQQ+LHFGWYC+D+L+RSTRSLV Y+ARNYR LG++L+DLLQAGN+
Sbjct: 282  LRCWAEAAGVDEKVLQQQLHFGWYCQDELVRSTRSLVLYLARNYRGLGVALDDLLQAGNL 341

Query: 970  GVLQGAERFDHTRGYRFSTYIQYWIRKSMSTLVARHSRGIHIPVSLNSVMNQIRKARRSL 791
            G+LQGAERFD +RGYRFSTY+QYWIRKSMS LVA+H+RGI IP +L+  +N+I+KAR++ 
Sbjct: 342  GLLQGAERFDPSRGYRFSTYVQYWIRKSMSRLVAQHARGIKIPNTLSKAINRIQKARKAN 401

Query: 790  YNIHGRYPNDDEISRFTGVSLAKIRLACKCPRIVGSIDQRMGDNLSVKFMEFTSDKSIKT 611
            YN H +YP+D+EI++ TG+SLAKI  A +C R+VGS+D ++ +  +  +MEFT D +++T
Sbjct: 402  YNSHMKYPDDEEIAKITGLSLAKISSASRCLRVVGSVDHKIWECSAGTYMEFTPDIAVET 461

Query: 610  PEEMVMMQHMRKDIYELLQGLQPRERQVLILRYGLQDGRSKSLEEIGRVFKCTKEWIRKI 431
            PEE VM QHM+ DI+ LL+GL  RE++VL LRYGL     KSLEEIGR+F  +KEWIRKI
Sbjct: 462  PEESVMRQHMKNDIHVLLEGLNSREKKVLALRYGLNYCNPKSLEEIGRLFHVSKEWIRKI 521

Query: 430  EKSALTKVRKEEVQRNLSHYL 368
            EK+ALTK+R EE  +NLSHYL
Sbjct: 522  EKNALTKLRNEESNKNLSHYL 542


>ref|XP_006450763.1| hypothetical protein CICLE_v10007968mg [Citrus clementina]
            gi|557553989|gb|ESR64003.1| hypothetical protein
            CICLE_v10007968mg [Citrus clementina]
          Length = 534

 Score =  506 bits (1302), Expect = e-140
 Identities = 272/561 (48%), Positives = 373/561 (66%), Gaps = 7/561 (1%)
 Frame = -1

Query: 2029 MGFGFMLDSKWVFPIQSSFFTNSPTKQYSSSVRGKEASYESPRMSILSVIPEESEVLYKD 1850
            MG GF L+ KWV P+QS FFT S  +  S+SVRG+E S+ S R+S LS I E+S   ++D
Sbjct: 1    MGMGFRLNLKWVSPVQSHFFTTSSCRLSSTSVRGREGSFNSARLSFLSTISEDSASYFQD 60

Query: 1849 SLKAYXXXXXSLQIIENQSGDKEEIKMKIGRGSHRTLYNPIDDTSVSIQDDTSTSYPMLQ 1670
             +KAY     + Q +EN   + EEI+ K               TS   QD +S S     
Sbjct: 61   PVKAYTCSFVNTQTVENDYSETEEIRQK--------------STSCIGQDASSRS----- 101

Query: 1669 VNKTSHFSSLMENIEKIDEIFVDADVVKLEKDILIQLGKLGAIKLFHVCLSRTLGLKEPT 1490
                  F  LMEN++ ++  F D+D ++LE++IL QLGKLGA+KLF+  LSR +      
Sbjct: 102  -----DFRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIV-----K 151

Query: 1489 LSTPIPITEL-PRDSPINGPIDDKVGNIIVXXXXXXXXXXXXXRALENXXXXXXXXXXXX 1313
             S  + ++++   +  +N   D  +G I+V             R  E             
Sbjct: 152  TSNVLDLSDVHTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLLSLPSE 211

Query: 1312 XXXKVPRR------ENPSNSMTRRLIIAKKESKMSIGVKEAANLERIRTSLEAETGRVIS 1151
               +  ++      E   NS  RRL+IA+ E++MS GV+  ANLERI+T+LE E+G+  S
Sbjct: 212  ALQEGLKQPTIFSPERALNSRGRRLMIARNEAEMSKGVQVVANLERIKTTLEKESGKAAS 271

Query: 1150 FSCWAEAAGVDEKVLQQRLHFGWYCRDKLLRSTRSLVFYIARNYRRLGISLEDLLQAGNV 971
             +CWA+AAGV E+VL+Q L FGWYCR++L++STR LV ++ARNYR LGI   DLLQAGNV
Sbjct: 272  LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331

Query: 970  GVLQGAERFDHTRGYRFSTYIQYWIRKSMSTLVARHSRGIHIPVSLNSVMNQIRKARRSL 791
            GVLQGAERFDHTRGY+FSTY+QYWIRKS+S +VARH+RGI IP  LN  +++I+KAR++L
Sbjct: 332  GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKAL 391

Query: 790  YNIHGRYPNDDEISRFTGVSLAKIRLACKCPRIVGSIDQRMGDNLSVKFMEFTSDKSIKT 611
             N HG+YP D EI+++TG+SLA+IR A +C RIVGSIDQ++GD L+ K++EF  D+S+K+
Sbjct: 392  TNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKS 451

Query: 610  PEEMVMMQHMRKDIYELLQGLQPRERQVLILRYGLQDGRSKSLEEIGRVFKCTKEWIRKI 431
            P+E+VM QHM+KD++ +L+ L  RERQVL+LRYGL D R KSLEEIG++F  +KEWIRK+
Sbjct: 452  PKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKL 511

Query: 430  EKSALTKVRKEEVQRNLSHYL 368
            EK A+TK+R  E  R+LSH+L
Sbjct: 512  EKKAMTKLRDSETCRDLSHFL 532


>ref|XP_007012219.1| RNApolymerase sigma-subunit C, putative [Theobroma cacao]
            gi|508782582|gb|EOY29838.1| RNApolymerase sigma-subunit
            C, putative [Theobroma cacao]
          Length = 848

 Score =  502 bits (1293), Expect = e-139
 Identities = 280/561 (49%), Positives = 370/561 (65%), Gaps = 11/561 (1%)
 Frame = -1

Query: 2014 MLDSKWVFPIQSSFFTNSPTKQYSSSVRGKEASYESPRMSILSVIPEESEVLYKDSLKAY 1835
            +L+ K V P+ S F  NSP++  SS V                       +  KD LKAY
Sbjct: 316  VLNLKGVCPVPSHFLANSPSRLPSSGV-----------------------LSLKDPLKAY 352

Query: 1834 XXXXXSLQIIENQSGDKEEIKMKIGRGS--HRTLYNPIDDTSVSIQDDTSTSYPMLQVNK 1661
                   Q +E    + EE+K+ IG+GS  H      ID T   I  D S+S    Q  K
Sbjct: 353  ASSAAP-QTLEKGCLEIEEMKVNIGKGSQAHSHSLTMIDKTHELIGGDKSSSRTSPQACK 411

Query: 1660 TSHFSSLMENIEKIDEIFVDADVVKLEKDILIQLGKLGAIKLFHVCLSRTLGLKEPTLST 1481
             SH+S LMEN++ ++E F D+DV+ LE++IL+QLG+ GA+KLF+ CLSRTL       S 
Sbjct: 412  ASHYSLLMENLDVLEETFADSDVLTLEREILLQLGRFGALKLFNTCLSRTL-----KASN 466

Query: 1480 PIPITELPRDSP---INGPIDDKVGNIIVXXXXXXXXXXXXXRALENXXXXXXXXXXXXX 1310
             + ++++P +S    +N  +D +  NI+V             RALEN             
Sbjct: 467  ILDLSDVPANSGDCNMNLSVDGQKDNIVVCSRKKKQRKKIRERALENPTIISTQLMPSNT 526

Query: 1309 XXK------VPRRENPSNSMTRRLIIAKKESKMSIGVKEAANLERIRTSLEAETGRVISF 1148
                     V   +  S+S +RRL IA+ E++MS GVK  ANLERIRT+LE ETGR  S 
Sbjct: 527  LHGRFQKPKVSSAKRVSDSRSRRLRIARNEAEMSKGVKVVANLERIRTTLEEETGRAASL 586

Query: 1147 SCWAEAAGVDEKVLQQRLHFGWYCRDKLLRSTRSLVFYIARNYRRLGISLEDLLQAGNVG 968
            SCWAEAAGV EKVLQQ L FGWYCRD+LLRSTRSLV Y ARNYR LGI+ EDL+QAG++G
Sbjct: 587  SCWAEAAGVSEKVLQQHLRFGWYCRDELLRSTRSLVLYFARNYRGLGIAHEDLIQAGSLG 646

Query: 967  VLQGAERFDHTRGYRFSTYIQYWIRKSMSTLVARHSRGIHIPVSLNSVMNQIRKARRSLY 788
            VLQGAERFDHTRGYRFSTY+Q+WIRKS+S +VARH+RGI +P +L+  + QI+KAR++L 
Sbjct: 647  VLQGAERFDHTRGYRFSTYVQFWIRKSVSRIVARHARGIQVPCTLSRAIVQIQKARKALS 706

Query: 787  NIHGRYPNDDEISRFTGVSLAKIRLACKCPRIVGSIDQRMGDNLSVKFMEFTSDKSIKTP 608
              HG+YP++D I++FTG+SLAKIR A KC R+VGSIDQ++GD ++ K++EF  D S+++P
Sbjct: 707  KSHGKYPDEDAIAKFTGLSLAKIRSANKCMRVVGSIDQKIGDCMNAKYLEFIPDLSVRSP 766

Query: 607  EEMVMMQHMRKDIYELLQGLQPRERQVLILRYGLQDGRSKSLEEIGRVFKCTKEWIRKIE 428
            E+ VM QHM++DI++LL GL  RERQV++LRYGL+    KSLEEIGR+F  +KEWIR+IE
Sbjct: 767  EKTVMRQHMKEDIHDLLNGLDARERQVMVLRYGLKGSPPKSLEEIGRLFHVSKEWIRRIE 826

Query: 427  KSALTKVRKEEVQRNLSHYLN 365
              A+ K+R +E  RNLSHYL+
Sbjct: 827  MKAMKKLRDKETCRNLSHYLD 847


>ref|XP_006475980.1| PREDICTED: RNA polymerase sigma factor sigC-like [Citrus sinensis]
          Length = 534

 Score =  502 bits (1292), Expect = e-139
 Identities = 270/561 (48%), Positives = 372/561 (66%), Gaps = 7/561 (1%)
 Frame = -1

Query: 2029 MGFGFMLDSKWVFPIQSSFFTNSPTKQYSSSVRGKEASYESPRMSILSVIPEESEVLYKD 1850
            MG GF L+ KWV P+QS FFT S  +  S+SVRG+E S+ S R+S LS I E+S   ++D
Sbjct: 1    MGMGFRLNLKWVSPVQSHFFTTSSCRLSSTSVRGREGSFNSARLSFLSTISEDSASYFQD 60

Query: 1849 SLKAYXXXXXSLQIIENQSGDKEEIKMKIGRGSHRTLYNPIDDTSVSIQDDTSTSYPMLQ 1670
             +KAY     + Q +EN   + EEI+ K               TS   QD +S S     
Sbjct: 61   PVKAYTCSFVNTQTVENDYSETEEIRQK--------------STSCIGQDASSRS----- 101

Query: 1669 VNKTSHFSSLMENIEKIDEIFVDADVVKLEKDILIQLGKLGAIKLFHVCLSRTLGLKEPT 1490
                  F  LMEN++ ++  F D+D ++LE++IL QLGKLGA+KLF+  LSR +      
Sbjct: 102  -----DFRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIV-----K 151

Query: 1489 LSTPIPITEL-PRDSPINGPIDDKVGNIIVXXXXXXXXXXXXXRALENXXXXXXXXXXXX 1313
             S  + ++++   +  ++   D  +G I+V             R  E             
Sbjct: 152  TSNVLDLSDVHTEEQKMDDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETYLLSLPSE 211

Query: 1312 XXXKVPRR------ENPSNSMTRRLIIAKKESKMSIGVKEAANLERIRTSLEAETGRVIS 1151
               +  ++      E   NS  RRL+IA+ E++MS GV+  ANLERI+T+LE E+G+   
Sbjct: 212  ALQEGLKQPTIFSAERALNSRGRRLMIARNEAEMSKGVQVVANLERIKTTLEKESGKAAR 271

Query: 1150 FSCWAEAAGVDEKVLQQRLHFGWYCRDKLLRSTRSLVFYIARNYRRLGISLEDLLQAGNV 971
             +CWA+AAGV E+VL+Q L FGWYCR++L++STR LV ++ARNYR LGI   DLLQAGNV
Sbjct: 272  LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331

Query: 970  GVLQGAERFDHTRGYRFSTYIQYWIRKSMSTLVARHSRGIHIPVSLNSVMNQIRKARRSL 791
            GVLQGAERFDHTRGY+FSTY+QYWIRKS+S +VARH+RGI IP  LN  +++I+KAR++L
Sbjct: 332  GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKAL 391

Query: 790  YNIHGRYPNDDEISRFTGVSLAKIRLACKCPRIVGSIDQRMGDNLSVKFMEFTSDKSIKT 611
             N HG+YP D EI+++TG+SLA+IR A +C RIVGSIDQ++GD L+ K++EF  D+S+K+
Sbjct: 392  TNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKS 451

Query: 610  PEEMVMMQHMRKDIYELLQGLQPRERQVLILRYGLQDGRSKSLEEIGRVFKCTKEWIRKI 431
            P+E+VM QHM+KD++ +L+ L  RERQVL+LRYGL D R KSLEEIG++F  +KEWIRK+
Sbjct: 452  PKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKL 511

Query: 430  EKSALTKVRKEEVQRNLSHYL 368
            EK A+TK+R  E  R+LSH+L
Sbjct: 512  EKKAMTKLRDSETCRDLSHFL 532


>ref|XP_006853783.1| hypothetical protein AMTR_s00056p00209700 [Amborella trichopoda]
            gi|548857444|gb|ERN15250.1| hypothetical protein
            AMTR_s00056p00209700 [Amborella trichopoda]
          Length = 529

 Score =  490 bits (1262), Expect = e-136
 Identities = 271/533 (50%), Positives = 353/533 (66%), Gaps = 8/533 (1%)
 Frame = -1

Query: 1939 SVRGKEASYESPRMSILSVIPEESEVLYKDSLKAYXXXXXSLQIIENQSGDKEEIKMKIG 1760
            +V+ K+ S ES + S LSVIPEE+E L  D  K +      +Q   +     EE+KM I 
Sbjct: 6    AVKSKQPSIESAKASTLSVIPEETERLLGDCTKDFPYFFGDIQNANSSHDITEEMKMNIN 65

Query: 1759 RGSHRTLYNPIDDTSVSIQDDTSTSYPMLQVNKTSHFSSLMENIEKIDEIFVDADVVKLE 1580
            +         ID   + I +DT ++   L      HFS L EN+EKI+ I VD+   +LE
Sbjct: 66   KNKPDASLYVIDKAELPIAEDTFSNVAGLP-----HFSFLFENLEKIEGIIVDSGNARLE 120

Query: 1579 KDILIQLGKLGAIKLFHVCLSRTLGLKEPTLSTPIPITELPRDSPINGPIDDKVGNIIVX 1400
            ++IL+ + +LGA+KLFH  LSRTL  K+P +   + +T    +  +  P+D++    IV 
Sbjct: 121  REILLHIERLGALKLFHAFLSRTL--KDPKI---LDVTGTCPEHAMVQPMDEQADGYIVS 175

Query: 1399 XXXXXXXXXXXXRALENXXXXXXXXXXXXXXXKVPRREN--------PSNSMTRRLIIAK 1244
                        RAL+                K  +  N        P NS +R  + A+
Sbjct: 176  SGKKVERKAQRERALKKVTDEPIVCSSLKRVKKSTKSINAALTHKGHPGNSKSRSHLRAQ 235

Query: 1243 KESKMSIGVKEAANLERIRTSLEAETGRVISFSCWAEAAGVDEKVLQQRLHFGWYCRDKL 1064
             E +MS GV+E A LE+IR +LE   GR  SFS WAEAAG++EKVL+Q+LHFGW+CRDKL
Sbjct: 236  SEVEMSRGVQEVAKLEKIRANLEENLGRDASFSVWAEAAGINEKVLKQQLHFGWFCRDKL 295

Query: 1063 LRSTRSLVFYIARNYRRLGISLEDLLQAGNVGVLQGAERFDHTRGYRFSTYIQYWIRKSM 884
            LRSTR LV Y+A++YR  GI  EDLLQAG++GVLQGAERFDHTRGYRFSTY+QYWIRKS+
Sbjct: 296  LRSTRPLVMYLAKSYRGRGIGFEDLLQAGSLGVLQGAERFDHTRGYRFSTYVQYWIRKSL 355

Query: 883  STLVARHSRGIHIPVSLNSVMNQIRKARRSLYNIHGRYPNDDEISRFTGVSLAKIRLACK 704
            S LVARHSRG+ IP++LN V+NQ  KA+R+L+ +HGR+P + EI+ FTG+SL  +RLA K
Sbjct: 356  SALVARHSRGVQIPMALNKVLNQTVKAKRALHQMHGRHPREVEIAEFTGLSLVNVRLANK 415

Query: 703  CPRIVGSIDQRMGDNLSVKFMEFTSDKSIKTPEEMVMMQHMRKDIYELLQGLQPRERQVL 524
            C R+ GSIDQR+GDN    +ME T+D  I+TPE+MVM QHMR+ I+E+L  L PRE+QVL
Sbjct: 416  CLRVHGSIDQRIGDNWGATYMEVTADTFIETPEKMVMKQHMREAIHEVLVNLHPREKQVL 475

Query: 523  ILRYGLQDGRSKSLEEIGRVFKCTKEWIRKIEKSALTKVRKEEVQRNLSHYLN 365
            +LRYGL DGR KSLEEIGR++  TKEWIRKIEK AL KVRKEEVQ NL+ +LN
Sbjct: 476  MLRYGLWDGRCKSLEEIGRLYNVTKEWIRKIEKMALEKVRKEEVQCNLNFFLN 528


>ref|XP_004148429.1| PREDICTED: RNA polymerase sigma factor sigC-like [Cucumis sativus]
            gi|449507267|ref|XP_004162982.1| PREDICTED: RNA
            polymerase sigma factor sigC-like [Cucumis sativus]
          Length = 559

 Score =  470 bits (1209), Expect = e-129
 Identities = 264/561 (47%), Positives = 364/561 (64%), Gaps = 6/561 (1%)
 Frame = -1

Query: 2029 MGFGFMLDSKWVFPIQSSFFTNSPTKQYSSSVRGKEASYESPRMSILSVIPEESEVLYKD 1850
            MG  F  + +W F IQ+    NSP+K    + +G+EA++ S R+S  S I EE E + ++
Sbjct: 1    MGTSFRPNLRWGFQIQTHSLKNSPSKLSPHASKGREAAFNSGRLSFFSSICEEGESIPRE 60

Query: 1849 SLKAYXXXXXSLQIIENQSGDKEEIKMKIGRGSHRTLYNPIDDTSVSIQDDTSTSYPMLQ 1670
            +LK Y     + Q   N   + EEI+M  G  S   ++  I  T  S  +D  +S   L 
Sbjct: 61   TLKTYTCLSEAPQTSANDLLNLEEIEMNSGAKSLGPMHYGIKSTRPSKVEDNFSSCTSLP 120

Query: 1669 VNKTSHFSSLMENIEKIDEIFVDADVVKLEKDILIQLGKLGAIKLFHVCLSRTLGLKEPT 1490
              K S F  LMEN++ ++E F ++ ++ LE+DI++QL KLGA++ F+ CLSRTL      
Sbjct: 121  TGKASPFGILMENLDVLEETFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFH 180

Query: 1489 LSTPIPITELPRDSPINGPIDDKVGNIIVXXXXXXXXXXXXXRALENXXXXXXXXXXXXX 1310
             S+ +PI E   D  +N   +D+  N+ V             RA++N             
Sbjct: 181  DSSGLPI-EGGEDHNVNQKTNDQNDNVTVYSAKKAGRRSVKKRAMDNADKIASRLLTTRA 239

Query: 1309 XXK------VPRRENPSNSMTRRLIIAKKESKMSIGVKEAANLERIRTSLEAETGRVISF 1148
              +      V  R+  SNS  RRLI+A  E++MS GVK  ANLERIR +LE E+GR+ S 
Sbjct: 240  VKEKIHRSTVFSRKKSSNSSKRRLIVAINEAEMSTGVKVVANLERIRETLEKESGRIASM 299

Query: 1147 SCWAEAAGVDEKVLQQRLHFGWYCRDKLLRSTRSLVFYIARNYRRLGISLEDLLQAGNVG 968
            SCWAEAA VD K LQ++L FG +CRD+LLRST SLV ++A+ YR  G+ +EDL+QAG +G
Sbjct: 300  SCWAEAASVDIKDLQKQLQFGSFCRDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALG 359

Query: 967  VLQGAERFDHTRGYRFSTYIQYWIRKSMSTLVARHSRGIHIPVSLNSVMNQIRKARRSLY 788
            VLQG ERFD  RG+R STYIQYWIRKSMS +VAR+SRGI IP SL   +NQI+KAR+ L 
Sbjct: 360  VLQGVERFDPKRGFRISTYIQYWIRKSMSRVVARNSRGIQIPRSLTKAINQIQKARKVL- 418

Query: 787  NIHGRYPNDDEISRFTGVSLAKIRLACKCPRIVGSIDQRMGDNLSVKFMEFTSDKSIKTP 608
            N  GR  +DD+I+R TG+ LAK+R+A  C ++VGS DQ+MGD +++K+MEFT+D SI++P
Sbjct: 419  NHSGRRYSDDDIARATGLPLAKVRVASNCLKVVGSNDQKMGDGVNMKYMEFTADMSIQSP 478

Query: 607  EEMVMMQHMRKDIYELLQGLQPRERQVLILRYGLQDGRSKSLEEIGRVFKCTKEWIRKIE 428
            EE V  + M+KDI+ +LQ L+ RERQVL+LRYGL D   KSLEEIG++   +KEW+RKIE
Sbjct: 479  EETVKRKLMKKDIFNILQRLESRERQVLVLRYGLVDFEPKSLEEIGKLLHISKEWVRKIE 538

Query: 427  KSALTKVRKEEVQRNLSHYLN 365
            K A+TK++ EE  ++LSHYL+
Sbjct: 539  KKAMTKLKNEETVKHLSHYLD 559


>ref|XP_006355305.1| PREDICTED: RNA polymerase sigma factor sigC-like [Solanum tuberosum]
          Length = 555

 Score =  468 bits (1204), Expect = e-129
 Identities = 257/560 (45%), Positives = 358/560 (63%), Gaps = 10/560 (1%)
 Frame = -1

Query: 2020 GFMLDSKWVFPIQSSFFTNSPTKQYSSSVRGKEASYESPRMSILSVIPEESEVLYKDSLK 1841
            GF L  KW F +Q  F +NS +   S S +G+EA Y+ P  S+   I  + E  + D  +
Sbjct: 2    GFRLHLKWGFSVQPPFSSNSSSWPSSHSFKGREALYD-PARSLKPFITGDCEPSHSDPFR 60

Query: 1840 AYXXXXXSLQIIENQSGDKEEIKMKIGRGSHRTLYNPIDDTSVSIQDDTSTSYPMLQVNK 1661
                     Q+  + +    EIK + GRGS   +Y  I    + I  D       L   K
Sbjct: 61   VQTCLSDP-QLWTSDTSVTTEIKTRNGRGSPSNVYGDIGSHKIGISPDGEKP-TYLNTTK 118

Query: 1660 TSHFSSLMENIEKIDEIFVDADVVKLEKDILIQLGKLGAIKLFHVCLSRTLGLKEPTLST 1481
            + HFS LM+N++ ++ +F D+++ +LE+DIL+QL KLGA++ FH CLSRT        ST
Sbjct: 119  SLHFSLLMKNLDLLENMFADSEMSRLERDILVQLEKLGALEFFHTCLSRT-----HHSST 173

Query: 1480 PIPITELPRDSPINGPIDDKVGN----IIVXXXXXXXXXXXXXRALENXXXXXXXXXXXX 1313
               + ++PR+       DD VGN    ++V             RA  N            
Sbjct: 174  FPKVLDVPRELIKEVEKDDLVGNAIDKVVVRSRKKQERKSRRNRASRNANDIITVQPHTK 233

Query: 1312 XXXKVPRR------ENPSNSMTRRLIIAKKESKMSIGVKEAANLERIRTSLEAETGRVIS 1151
               +  ++      +    S  +R  IAK E++MS GVK  A LERIR+ LE ETGRV +
Sbjct: 234  NIQEDLQQPKFYSGKRTQASRNKRQKIAKNEAEMSRGVKLVAQLERIRSILEEETGRVAT 293

Query: 1150 FSCWAEAAGVDEKVLQQRLHFGWYCRDKLLRSTRSLVFYIARNYRRLGISLEDLLQAGNV 971
            FS WAEAAG+++K LQQRLHFGWYCRD+LL+STRSLV Y+ARNYR LG++ EDL+QAGN+
Sbjct: 294  FSSWAEAAGIEQKELQQRLHFGWYCRDELLKSTRSLVLYLARNYRGLGVAFEDLIQAGNM 353

Query: 970  GVLQGAERFDHTRGYRFSTYIQYWIRKSMSTLVARHSRGIHIPVSLNSVMNQIRKARRSL 791
            GVLQGA RFDHTRGY+FSTY+QYWIRKS+S LVA+H+RG+ IP ++  V+NQI KAR++L
Sbjct: 354  GVLQGAVRFDHTRGYKFSTYVQYWIRKSLSKLVAQHARGVRIPFTICKVINQIHKARKTL 413

Query: 790  YNIHGRYPNDDEISRFTGVSLAKIRLACKCPRIVGSIDQRMGDNLSVKFMEFTSDKSIKT 611
               HG++P DDEI++FTG+S A+I +A KC R+VGSIDQ++GD +S K +E T DKSI +
Sbjct: 414  SRSHGKFPADDEIAKFTGLSTARIAMASKCLRVVGSIDQKVGDCISAKVLELTPDKSITS 473

Query: 610  PEEMVMMQHMRKDIYELLQGLQPRERQVLILRYGLQDGRSKSLEEIGRVFKCTKEWIRKI 431
            PEE VM Q +  ++Y LL+ L P+E+QV+  R+GL+  + KSLEEIGR++  +KEWIR+I
Sbjct: 474  PEETVMRQDIVDNMYSLLESLDPKEQQVIYFRFGLETHQRKSLEEIGRLYGVSKEWIRRI 533

Query: 430  EKSALTKVRKEEVQRNLSHY 371
            E+ ALTK+R  +  ++++HY
Sbjct: 534  ERRALTKLRNADYFQHITHY 553


>emb|CAD20832.1| sigma factor [Spinacia oleracea]
          Length = 548

 Score =  466 bits (1198), Expect = e-128
 Identities = 257/561 (45%), Positives = 362/561 (64%), Gaps = 6/561 (1%)
 Frame = -1

Query: 2029 MGFGFMLDS-KWVFPIQSSFFTNSPTKQYSSSVRGKEASYESPRMSILSVIPEESEVLYK 1853
            MGFG  L+  + V P   S FT + +   S+S RGKE  + S R+S+L++  +ESE L K
Sbjct: 1    MGFGCKLNMMRCVLPSLRSPFTTNSSPPCSTSFRGKELDFGSARLSLLTIGFDESETLRK 60

Query: 1852 DSLKAYXXXXXSLQIIENQSGDKEEIKMKIGRGSHRTLYNPIDDTSVSIQDDTSTSYPML 1673
            D+L+ +         +EN   D   ++  I + S + L   I DT V    D S     +
Sbjct: 61   DTLRPHAGSSSVPLTVEN---DYSNLETTISKRSCKDL---ISDTEVLSDRDVSVYVRSV 114

Query: 1672 QVNKTSHFSSLMENIEKIDEIFVDADVVKLEKDILIQLGKLGAIKLFHVCLSRTLGLKEP 1493
            Q    SHF +LM NI  ++    D++++KLEKDIL+QLG+LGA++LFH CLSR + + + 
Sbjct: 115  QSCSASHFHTLMANINLLENKVSDSELLKLEKDILVQLGRLGALQLFHACLSRIIDMSD- 173

Query: 1492 TLSTPIPITELPRDSPINGPIDDKVGNIIVXXXXXXXXXXXXXRALE-----NXXXXXXX 1328
                P  ITE   D   N   D+++   +V             R L+             
Sbjct: 174  ---LPGLITE---DGKANVRKDNELKKKLVFSKRKEERKLRQERRLQASTSKRCACKSES 227

Query: 1327 XXXXXXXXKVPRRENPSNSMTRRLIIAKKESKMSIGVKEAANLERIRTSLEAETGRVISF 1148
                     V      + +  RR IIAK E++MS G+K  A LE+++ +LE ETG+ +S 
Sbjct: 228  SIESSIHHVVSTAAKKTKARGRRAIIAKNEAEMSRGIKVVAQLEKVKLTLEKETGKAVSL 287

Query: 1147 SCWAEAAGVDEKVLQQRLHFGWYCRDKLLRSTRSLVFYIARNYRRLGISLEDLLQAGNVG 968
            +CWAEAAG+DEKVLQ  LHFGWYCRD+LL+S RSLV Y++R YR LG++ EDL+QAGN+G
Sbjct: 288  NCWAEAAGIDEKVLQHDLHFGWYCRDELLKSGRSLVLYLSRYYRGLGVAHEDLMQAGNIG 347

Query: 967  VLQGAERFDHTRGYRFSTYIQYWIRKSMSTLVARHSRGIHIPVSLNSVMNQIRKARRSLY 788
            +LQGAERFDHTRGY+FSTY+QYWIRK+MS LV+RH RGI +P +L++ +N+++KAR+ L 
Sbjct: 348  ILQGAERFDHTRGYQFSTYVQYWIRKAMSQLVSRHGRGIKVPTTLSTTINRVQKARKILK 407

Query: 787  NIHGRYPNDDEISRFTGVSLAKIRLACKCPRIVGSIDQRMGDNLSVKFMEFTSDKSIKTP 608
               G++P+D E+S+ TG+SL KI+ A  C RIVGS+DQ++G  +++K++E T D +++ P
Sbjct: 408  RSQGKHPDDVEVSKSTGLSLDKIKSADNCLRIVGSLDQKVGHFINMKYLECTPDTALEMP 467

Query: 607  EEMVMMQHMRKDIYELLQGLQPRERQVLILRYGLQDGRSKSLEEIGRVFKCTKEWIRKIE 428
            E+ VM QHMR D+++LLQ L P+ER+VLI RYGL +G   SL E+G+VF  +KEWIRK+E
Sbjct: 468  EKTVMKQHMRNDVHKLLQELDPKERRVLIHRYGL-EGHCMSLHEVGKVFDVSKEWIRKME 526

Query: 427  KSALTKVRKEEVQRNLSHYLN 365
            K ALTK+R E+ Q NL HYLN
Sbjct: 527  KRALTKLRTEQNQTNLKHYLN 547


>ref|XP_004245130.1| PREDICTED: RNA polymerase sigma factor sigC-like [Solanum
            lycopersicum]
          Length = 551

 Score =  456 bits (1172), Expect = e-125
 Identities = 250/560 (44%), Positives = 357/560 (63%), Gaps = 10/560 (1%)
 Frame = -1

Query: 2020 GFMLDSKWVFPIQSSFFTNSPTKQYSSSVRGKEASYESPRMSILSVIPEESEVLYKDSLK 1841
            GF L  KW F +Q  F +NS +   S S +G+E  Y+ P  S+   I  + E  + D  +
Sbjct: 2    GFRLHLKWGFSLQPPFSSNSSSWPSSHSFKGRETLYD-PARSLKPFINGDCEPSHSDPFR 60

Query: 1840 AYXXXXXSLQIIENQSGDKEEIKMKIGRGSHRTLYNPIDDTSVSIQDDTSTSYPMLQVNK 1661
                     Q+  + +    E K + GRGS   +Y  I    +  +  T      L   K
Sbjct: 61   VQTCLSDP-QLWTSDASVTTETKTRNGRGSPSNVYGDIGSYKIDGEKPT-----YLNTTK 114

Query: 1660 TSHFSSLMENIEKIDEIFVDADVVKLEKDILIQLGKLGAIKLFHVCLSRTLGLKEPTLST 1481
            + HFS LM+N++ ++ +F D+++ +LE+DIL+QL KLGA++ FH CLSRT      + S 
Sbjct: 115  SLHFSLLMKNLDLLENMFADSEMSRLERDILVQLEKLGALEFFHTCLSRT----HHSSSF 170

Query: 1480 PIPITELPRDSPINGPIDDKVGN----IIVXXXXXXXXXXXXXRALENXXXXXXXXXXXX 1313
            P  + ++PR+       DD VGN    ++V             RA  N            
Sbjct: 171  P-KVLDVPRELIKEVEKDDLVGNAMDKVVVRSRKKQERMSRRKRASRNANDIITVQPHTK 229

Query: 1312 XXXKVPRR------ENPSNSMTRRLIIAKKESKMSIGVKEAANLERIRTSLEAETGRVIS 1151
               +  ++      +    S T+R  IAK E++MS GVK  A LERIR+ LE ETG+V +
Sbjct: 230  NIQEDLQQLKFYSGKRTHASRTKRQKIAKNEAEMSKGVKLVAQLERIRSILEEETGQVAT 289

Query: 1150 FSCWAEAAGVDEKVLQQRLHFGWYCRDKLLRSTRSLVFYIARNYRRLGISLEDLLQAGNV 971
            FS WA+AAG+++K LQQ LHFGWYCRD+LL+STRSLV Y+ARNYR LG++ EDL+QAGN+
Sbjct: 290  FSSWAKAAGIEQKELQQHLHFGWYCRDELLKSTRSLVLYLARNYRGLGVAFEDLIQAGNM 349

Query: 970  GVLQGAERFDHTRGYRFSTYIQYWIRKSMSTLVARHSRGIHIPVSLNSVMNQIRKARRSL 791
            GVLQGA RFDHTRGY+FSTY+QYWIRKS+S LVA+H+RG+ IP ++  V+NQI KAR++L
Sbjct: 350  GVLQGAVRFDHTRGYKFSTYVQYWIRKSLSKLVAQHARGVRIPFTICKVINQIHKARKTL 409

Query: 790  YNIHGRYPNDDEISRFTGVSLAKIRLACKCPRIVGSIDQRMGDNLSVKFMEFTSDKSIKT 611
               HG++P DDEI++FTG+S A+I +A KC R+VGSIDQ++GD ++ K +E T DKS+ +
Sbjct: 410  SRSHGKFPADDEIAKFTGLSTARIAMASKCLRVVGSIDQKVGDCINAKVLELTPDKSVTS 469

Query: 610  PEEMVMMQHMRKDIYELLQGLQPRERQVLILRYGLQDGRSKSLEEIGRVFKCTKEWIRKI 431
            PEE VM Q +  ++Y LL+ L P+E+QV+  R+GL+  + KSLEEIGR++  +KEWIR+I
Sbjct: 470  PEEFVMRQDIVDNMYALLESLDPKEQQVIYFRFGLETHQRKSLEEIGRLYGVSKEWIRRI 529

Query: 430  EKSALTKVRKEEVQRNLSHY 371
            E+ ALTK+R  +  ++++HY
Sbjct: 530  ERRALTKLRSADYFQHITHY 549


>ref|XP_003551127.1| PREDICTED: RNA polymerase sigma factor sigC isoform X1 [Glycine max]
          Length = 551

 Score =  444 bits (1143), Expect = e-122
 Identities = 251/563 (44%), Positives = 360/563 (63%), Gaps = 8/563 (1%)
 Frame = -1

Query: 2029 MGFGFMLDSKWVFPI---QSSFFTNSPTKQYSSSVRGKEASYESPRMSILSVIPEESEVL 1859
            +GFGF L+ +  + +       FTNSP     SS   +E  +   R+S  S   EE E L
Sbjct: 3    LGFGFGLNPRLRYCLLLHTPHSFTNSPLCLSPSSAGVRETCFNFTRLSFPSTFYEEGEAL 62

Query: 1858 YKDSLKAYXXXXXSLQIIENQSGDKEEIKMKIGRGSHRTLYNPIDDTSVSIQDDTSTSYP 1679
             KD  + +     +L+ +EN S  +EE ++  G+ S  +++  ID+T +    + ST   
Sbjct: 63   QKDFGRVFAFSSSALETLENDSLGREETQVNKGKRSLSSVHKMIDNTQMPF-GEVSTVSK 121

Query: 1678 MLQVNKTSHFSSLMENIEKIDEIFVDADVVKLEKDILIQLGKLGAIKLFHVCLSRTLGLK 1499
              +  +  HF  LMEN+  ++E FVD++ ++LEK I++QLGKLGA++LF+VCLSR+LG  
Sbjct: 122  KFESFRAQHFRLLMENLCVLEETFVDSEALRLEKAIILQLGKLGALELFNVCLSRSLG-- 179

Query: 1498 EPTLSTPIPITELPRDSPINGPIDDKVGNIIVXXXXXXXXXXXXXR-----ALENXXXXX 1334
                      T L   S     +DD    ++V             R     A+ +     
Sbjct: 180  ----------TSLV--SNYADKVDDYKDKVVVQSSKKKENKTRRKREFVSTAVSSQSLTL 227

Query: 1333 XXXXXXXXXXKVPRRENPSNSMTRRLIIAKKESKMSIGVKEAANLERIRTSLEAETGRVI 1154
                           +   N+  +R+++AK+E++MS GVK  A LE+IRT++E +T RV 
Sbjct: 228  KANQEDLLGFSASLVKRAPNTKNKRILVAKREAEMSKGVKVLAELEKIRTAIEEDTKRVA 287

Query: 1153 SFSCWAEAAGVDEKVLQQRLHFGWYCRDKLLRSTRSLVFYIARNYRRLGISLEDLLQAGN 974
            S S WAEA+GVDEKVLQ+ LH G+YC+D+L+RSTRSLV Y+AR YR +GI+L+DLLQAG 
Sbjct: 288  SLSTWAEASGVDEKVLQKLLHRGYYCQDELIRSTRSLVLYLARKYRGMGIALDDLLQAGY 347

Query: 973  VGVLQGAERFDHTRGYRFSTYIQYWIRKSMSTLVARHSRGIHIPVSLNSVMNQIRKARRS 794
            VGVLQGAERFD TRGY+FSTY+QYWIRKS+  +VAR++RGI IP SLN  +NQI+KAR++
Sbjct: 348  VGVLQGAERFDSTRGYKFSTYVQYWIRKSILRVVARYARGIVIPWSLNRAINQIQKARKA 407

Query: 793  LYNIHGRYPNDDEISRFTGVSLAKIRLACKCPRIVGSIDQRMGDNLSVKFMEFTSDKSIK 614
            + + H + P+D EI++ TG+SL KI+ A  C RIV SIDQ++GD L V++ME   D +I+
Sbjct: 408  MKSTHKKCPDDYEIAKMTGLSLDKIKSASNCLRIVASIDQKVGDYLGVEYMELLPDATIE 467

Query: 613  TPEEMVMMQHMRKDIYELLQGLQPRERQVLILRYGLQDGRSKSLEEIGRVFKCTKEWIRK 434
            +PE+ VM QHMRKD+++LL+GL  RER++L LR+GL D + +SL++IG +FK +KE IRK
Sbjct: 468  SPEDAVMKQHMRKDVHDLLKGLNLRERKILTLRFGLNDNQPRSLQDIGTLFKVSKERIRK 527

Query: 433  IEKSALTKVRKEEVQRNLSHYLN 365
            IEK ALTK++ E     L +YL+
Sbjct: 528  IEKKALTKLKNEATISKLHYYLD 550


>ref|XP_004498453.1| PREDICTED: RNA polymerase sigma factor sigC-like [Cicer arietinum]
          Length = 545

 Score =  438 bits (1127), Expect = e-120
 Identities = 245/559 (43%), Positives = 359/559 (64%), Gaps = 6/559 (1%)
 Frame = -1

Query: 2023 FGFMLDSKWVFPIQSSFFTNSPT-KQYSSSVRGKEASYESPRMSILSVIPEESEVLYKDS 1847
            F F L++K   P    FFT+S      SSS  G+E  +   R+S+LS + EE E L KD 
Sbjct: 5    FRFRLNTKLHSP---HFFTSSTIFLSSSSSAGGREVFFNPTRLSLLSTVYEEGETLQKDF 61

Query: 1846 LKAYXXXXXSLQIIENQSGDKEEIKMKIGRGSHRTLYNPIDDTSVSIQDDTSTSYPMLQV 1667
             K +     +L++ E      E  K+  G+ S  +++  ID+T +   +           
Sbjct: 62   GKTFAFSSSALEVPEMDLLQGEVTKVNKGKRSLSSVHEIIDNTQLPFGEP---------- 111

Query: 1666 NKTSHFSSLMENIEKIDEIFVDADVVKLEKDILIQLGKLGAIKLFHVCLSRTLGLKEPTL 1487
                HF  LMEN+  ++E F D++ ++LEKDI+++L KLGA++LF+VCL+R+ G    + 
Sbjct: 112  ----HFGLLMENLGILEETFADSEAMRLEKDIVLKLEKLGALELFNVCLTRSFGTSTESN 167

Query: 1486 STPIPITELPRDSPINGPIDDKVGNIIVXXXXXXXXXXXXXRALE---NXXXXXXXXXXX 1316
             T + + E  ++   N  +D+  G ++V              ++    +           
Sbjct: 168  CTDV-VLEHVKEKKRNFKVDNYTGKVVVQSKRKENRTRRKQASVAITTSFQSLPLEDNNQ 226

Query: 1315 XXXXKVPRR--ENPSNSMTRRLIIAKKESKMSIGVKEAANLERIRTSLEAETGRVISFSC 1142
                ++P    +  SN+  RR +IA++E +MS GVK  A LE+++T++E +T + +S S 
Sbjct: 227  EGPLRLPASLVKRVSNTNNRRAVIAQREVEMSKGVKVLAELEKMKTAIEEDTKQAVSLSS 286

Query: 1141 WAEAAGVDEKVLQQRLHFGWYCRDKLLRSTRSLVFYIARNYRRLGISLEDLLQAGNVGVL 962
            WAEA+GVDE VLQ++L+ G+YCRD+L+RSTRSLV Y AR YR +GI+LEDLLQ G +GVL
Sbjct: 287  WAEASGVDENVLQRQLYHGYYCRDELIRSTRSLVLYFARKYRGMGIALEDLLQVGYIGVL 346

Query: 961  QGAERFDHTRGYRFSTYIQYWIRKSMSTLVARHSRGIHIPVSLNSVMNQIRKARRSLYNI 782
            QGAERFD TRGYRFSTY+QYWIRKSMS +VAR++RGI IP S+N  ++QI+KAR+ L + 
Sbjct: 347  QGAERFDSTRGYRFSTYVQYWIRKSMSRMVARYARGITIPWSMNKAISQIQKARKLLKST 406

Query: 781  HGRYPNDDEISRFTGVSLAKIRLACKCPRIVGSIDQRMGDNLSVKFMEFTSDKSIKTPEE 602
              +YP+D EI++ TG+SL +IR A  C RIV S++Q+MGD   +++M + +D SI++PEE
Sbjct: 407  SMKYPDDHEIAKMTGLSLDRIRSASHCMRIVSSMNQKMGDR-GIEYMGYMADMSIESPEE 465

Query: 601  MVMMQHMRKDIYELLQGLQPRERQVLILRYGLQDGRSKSLEEIGRVFKCTKEWIRKIEKS 422
             VM QH+RKDI+++LQ L  RERQ+LILR+GL D + KSLE IG+++K +KEWIRKIEK 
Sbjct: 466  TVMKQHIRKDIHDILQSLDSRERQILILRFGLNDHQPKSLEYIGKIYKVSKEWIRKIEKK 525

Query: 421  ALTKVRKEEVQRNLSHYLN 365
            ALTK+R E     L++YL+
Sbjct: 526  ALTKLRNEANTSKLNYYLD 544


>gb|EYU20393.1| hypothetical protein MIMGU_mgv1a018845mg [Mimulus guttatus]
          Length = 478

 Score =  426 bits (1096), Expect = e-116
 Identities = 220/472 (46%), Positives = 318/472 (67%), Gaps = 1/472 (0%)
 Frame = -1

Query: 1777 IKMKIGRGSHRTLYNPID-DTSVSIQDDTSTSYPMLQVNKTSHFSSLMENIEKIDEIFVD 1601
            I++ +G+GS  +LY+ +D D  +   +D   +   +Q  + S    LM+N++ ++++F D
Sbjct: 12   IQVALGKGSSDSLYSLLDSDIQIPKNEDKLENLTSVQATQASKLRLLMKNLDVLEDMFAD 71

Query: 1600 ADVVKLEKDILIQLGKLGAIKLFHVCLSRTLGLKEPTLSTPIPITELPRDSPINGPIDDK 1421
            ++ V+LE DIL QL +LGA++LFH CLSRT+        T   +++ P +      +   
Sbjct: 72   SNAVRLEGDILEQLERLGALRLFHSCLSRTI-----KSYTSFDLSDGPTEIVEECKVFVH 126

Query: 1420 VGNIIVXXXXXXXXXXXXXRALENXXXXXXXXXXXXXXXKVPRRENPSNSMTRRLIIAKK 1241
             G   +               ++                 +  R     S  +R   A+ 
Sbjct: 127  SGKKELRKLRRKRTSDNESPTIQESPSKTISKDLQQLKFAIAGRT--PRSRNKRQKTARN 184

Query: 1240 ESKMSIGVKEAANLERIRTSLEAETGRVISFSCWAEAAGVDEKVLQQRLHFGWYCRDKLL 1061
            E+ MS GVK  A LE+IRT LE ETG++ S S WAEAAG+ +K LQQ LH+GW+CRD+LL
Sbjct: 185  EADMSSGVKRVAELEKIRTKLEQETGQIASLSNWAEAAGIKKKELQQHLHYGWHCRDELL 244

Query: 1060 RSTRSLVFYIARNYRRLGISLEDLLQAGNVGVLQGAERFDHTRGYRFSTYIQYWIRKSMS 881
            RST SLV +IARNY  LG++ EDL+QAGN+GVLQGAERFD +RGY+FSTY+QYWIRKSMS
Sbjct: 245  RSTHSLVLFIARNYSGLGVAFEDLIQAGNIGVLQGAERFDQSRGYKFSTYVQYWIRKSMS 304

Query: 880  TLVARHSRGIHIPVSLNSVMNQIRKARRSLYNIHGRYPNDDEISRFTGVSLAKIRLACKC 701
            TLVA+H+RG+ IP +L+ V+NQ+ KAR++L   +G+YP+D EI++FTG+S+AK+  A KC
Sbjct: 305  TLVAKHARGVRIPCTLSKVINQVHKARKALTTSNGKYPDDYEIAKFTGLSVAKVMSASKC 364

Query: 700  PRIVGSIDQRMGDNLSVKFMEFTSDKSIKTPEEMVMMQHMRKDIYELLQGLQPRERQVLI 521
             R+VGSIDQ++G+ ++ K+ME  SD S+ +PEE V+ QHM  D+  LL GL+PRE+QV+I
Sbjct: 365  LRVVGSIDQKIGEYMTTKYMEILSDTSMPSPEEAVIRQHMLNDVSTLLNGLEPREKQVII 424

Query: 520  LRYGLQDGRSKSLEEIGRVFKCTKEWIRKIEKSALTKVRKEEVQRNLSHYLN 365
            LR+GL + + KSLEEIGR+F+ +KEWIRKIE+SAL K+R E+  + L+HY++
Sbjct: 425  LRFGLGNCQCKSLEEIGRLFRVSKEWIRKIERSALIKLRNEDSLKILNHYVH 476


>ref|XP_002877947.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
            gi|297323785|gb|EFH54206.1| predicted protein
            [Arabidopsis lyrata subsp. lyrata]
          Length = 568

 Score =  426 bits (1096), Expect = e-116
 Identities = 242/527 (45%), Positives = 335/527 (63%), Gaps = 3/527 (0%)
 Frame = -1

Query: 1936 VRGKEASYESPRMSILSVIPEESEVLYKDSLKAYXXXXXSLQIIENQSGDKEEIKMKIGR 1757
            VR   +S+ + R S LS + EES +  KD LKA           EN   + ++ K  IG 
Sbjct: 73   VRIPVSSFVATRWSFLSSVKEESRIYQKDPLKACASSAPYTA--ENVFLELKDPKENIGV 130

Query: 1756 GSHRTLYNPIDDTSVSIQDDTSTSYPMLQVNKTSHFSSLMENIEKIDEIFVDADVVKLEK 1577
            GS                + + +S  MLQ N       L +N+  ++E FV  D  ++E+
Sbjct: 131  GS---------------AEKSCSSRSMLQYNL------LAKNLLALEETFVALDSARMER 169

Query: 1576 DILIQLGKLGAIKLFHVCLSRTLGLKEPTLSTPIPITELPRDSPINGPIDDKVGNIIVXX 1397
            DI++Q+GKLGA  LF  CLSR+ G      S     TEL   +P     + +V   +   
Sbjct: 170  DIMLQMGKLGAADLFKTCLSRSRG--SSVASCLSDTTELVGTTP-----NQQV--FVSSR 220

Query: 1396 XXXXXXXXXXXRALENXXXXXXXXXXXXXXXK--VPRRENPSNSMTRRLIIAKKESKMSI 1223
                          EN                  VPR   P     +R  I+K E++MS 
Sbjct: 221  RKLKKKARRSTVTAENGDQGSLPMGLRTTWNNIDVPRVRRPPKYRKKRERISKNEAEMST 280

Query: 1222 GVKEAANLERIRTSLEAETGRVISFSCWAEAAGVDEKVLQQRLHFGWYCRDKLLRSTRSL 1043
            GVK  A++ERIRT LE E+G+V S SCWAEAAG++EK+L + LH+GWYCRD+LL+STRSL
Sbjct: 281  GVKIVADMERIRTQLEEESGKVASLSCWAEAAGMNEKLLMRNLHYGWYCRDELLKSTRSL 340

Query: 1042 VFYIARNYRRLGISLEDLLQAGNVGVLQGAERFDHTRGYRFSTYIQYWIRKSMSTLVARH 863
            V ++ARNYR LGI+ EDL+QAG VGVLQGAERFDHTRGY+FSTY+QYWIRKSMS +V+RH
Sbjct: 341  VLFLARNYRGLGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRKSMSMMVSRH 400

Query: 862  SRGIHIPVSLNSVMNQIRKARRSLYNIHG-RYPNDDEISRFTGVSLAKIRLACKCPRIVG 686
            +RG+HIP S+   +NQI+KAR++L   HG +YP D++IS+ T +S+ KIR A +C ++VG
Sbjct: 401  ARGVHIPSSIIRTINQIQKARKTLKTSHGIKYPADEDISKLTSLSVKKIRAANQCLKVVG 460

Query: 685  SIDQRMGDNLSVKFMEFTSDKSIKTPEEMVMMQHMRKDIYELLQGLQPRERQVLILRYGL 506
            SI++++GD  S KF+EFT D ++++PEE VM Q  R+DI++LL+GL+PRE+QV++LRYGL
Sbjct: 461  SIEKKVGDCFSTKFLEFTPDTTMESPEEAVMRQSARRDIHDLLEGLEPREKQVMVLRYGL 520

Query: 505  QDGRSKSLEEIGRVFKCTKEWIRKIEKSALTKVRKEEVQRNLSHYLN 365
            Q+ R KSLEEIG++ + +KEWIRKIE+ A+ K+R +    +L +YLN
Sbjct: 521  QNYRPKSLEEIGKLLRVSKEWIRKIERRAMAKLRDQPNAEDLRYYLN 567


>dbj|BAA22215.1| plastid RNA polymerase sigma-subunit [Arabidopsis thaliana]
          Length = 571

 Score =  424 bits (1089), Expect = e-115
 Identities = 240/527 (45%), Positives = 333/527 (63%), Gaps = 3/527 (0%)
 Frame = -1

Query: 1936 VRGKEASYESPRMSILSVIPEESEVLYKDSLKAYXXXXXSLQIIENQSGDKEEIKMKIGR 1757
            VR    S  + R S LS + EES +   DSLKA      S    +N              
Sbjct: 73   VRIPMTSVVATRWSFLSSVKEESRIYQNDSLKACGCASVSPYTAQNNV------------ 120

Query: 1756 GSHRTLYNPIDDTSVSIQDDTSTSYPMLQVNKTSHFSSLMENIEKIDEIFVDADVVKLEK 1577
              +  L +P ++  V   + + +S  MLQ N       L +N+  ++E FV  D V++E+
Sbjct: 121  --YVELKDPKENIGVGSAERSYSSRSMLQYNL------LAKNLLALEETFVALDSVRMER 172

Query: 1576 DILIQLGKLGAIKLFHVCLSRTLGLKEPTLSTPIPITELPRDSPINGPIDDKVGNIIVXX 1397
            DI++Q+GKLGA +LF  CLSR  G      S     TEL   +P     + +V   +   
Sbjct: 173  DIMLQMGKLGAAELFKTCLSRYRG--SSITSCLSDTTELVDTTP-----NQQV--FVSSR 223

Query: 1396 XXXXXXXXXXXRALENXXXXXXXXXXXXXXXK--VPRRENPSNSMTRRLIIAKKESKMSI 1223
                          EN                  VPR   P     +R  I++ E++MS 
Sbjct: 224  RKVKKKARRSSVTAENGDQSSLPIGLRTTWNNIDVPRVRRPPKYRKKRERISRNETEMST 283

Query: 1222 GVKEAANLERIRTSLEAETGRVISFSCWAEAAGVDEKVLQQRLHFGWYCRDKLLRSTRSL 1043
            GVK  A++ERIRT LE E+G+V S SCWA AAG++EK+L + LH+GWYCRD+L++STRSL
Sbjct: 284  GVKIVADMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRDELVKSTRSL 343

Query: 1042 VFYIARNYRRLGISLEDLLQAGNVGVLQGAERFDHTRGYRFSTYIQYWIRKSMSTLVARH 863
            V ++ARNYR +GI+ EDL+QAG VGVLQGAERFDHTRGY+FSTY+QYWIRKSMST+V+RH
Sbjct: 344  VLFLARNYRGMGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRKSMSTMVSRH 403

Query: 862  SRGIHIPVSLNSVMNQIRKARRSLYNIHG-RYPNDDEISRFTGVSLAKIRLACKCPRIVG 686
            +RG+HIP S+   +N I+KAR++L   HG +Y  D+EI++ TG S+ KIR A +C ++VG
Sbjct: 404  ARGVHIPSSIIRTINHIQKARKTLKTSHGIKYAADEEIAKLTGHSVKKIRAANQCLKVVG 463

Query: 685  SIDQRMGDNLSVKFMEFTSDKSIKTPEEMVMMQHMRKDIYELLQGLQPRERQVLILRYGL 506
            SID+++GD  + KF+EFT D ++++PEE VM Q  R+DI++LL+GL+PRE+QV++LRYGL
Sbjct: 464  SIDKKVGDCFTTKFLEFTPDTTMESPEEAVMRQSARRDIHDLLEGLEPREKQVMVLRYGL 523

Query: 505  QDGRSKSLEEIGRVFKCTKEWIRKIEKSALTKVRKEEVQRNLSHYLN 365
            QD R KSLEEIG++FK +KEWIRKIE+ A+ K+R +    +L +YLN
Sbjct: 524  QDYRPKSLEEIGKLFKVSKEWIRKIERRAMAKLRDQPNAEDLRYYLN 570


>ref|NP_190960.1| RNA polymerase sigma-subunit C [Arabidopsis thaliana]
            gi|75098239|sp|O24621.1|SIGC_ARATH RecName: Full=RNA
            polymerase sigma factor sigC; Short=Sigma factor C;
            Short=Sigma-C; AltName: Full=RNA polymerase sigma factor
            sig3; Short=Atsig3; Short=Sigma factor 3; Flags:
            Precursor gi|2353175|gb|AAB69386.1| sigma factor 3
            [Arabidopsis thaliana] gi|2463554|dbj|BAA22530.1| SigC
            [Arabidopsis thaliana] gi|5478585|dbj|BAA82450.1| sigma
            factor SigC [Arabidopsis thaliana]
            gi|7630012|emb|CAB88354.1| sigma factor SigC [Arabidopsis
            thaliana] gi|133778870|gb|ABO38775.1| At3g53920
            [Arabidopsis thaliana] gi|332645638|gb|AEE79159.1|
            RNApolymerase sigma-subunit C [Arabidopsis thaliana]
          Length = 571

 Score =  422 bits (1085), Expect = e-115
 Identities = 240/527 (45%), Positives = 332/527 (62%), Gaps = 3/527 (0%)
 Frame = -1

Query: 1936 VRGKEASYESPRMSILSVIPEESEVLYKDSLKAYXXXXXSLQIIENQSGDKEEIKMKIGR 1757
            VR    S  + R S LS + EES +   DSLKA      S    +N              
Sbjct: 73   VRIPMTSVVATRWSFLSSVKEESRIYQNDSLKACGCASVSPYTAQNNV------------ 120

Query: 1756 GSHRTLYNPIDDTSVSIQDDTSTSYPMLQVNKTSHFSSLMENIEKIDEIFVDADVVKLEK 1577
              +  L +P ++  V   + + +S  MLQ N       L +N+  ++E FV  D V++E+
Sbjct: 121  --YVELKDPKENIGVGSAERSYSSRSMLQYNL------LAKNLLALEETFVALDSVRMER 172

Query: 1576 DILIQLGKLGAIKLFHVCLSRTLGLKEPTLSTPIPITELPRDSPINGPIDDKVGNIIVXX 1397
            DI++Q+GKLGA +LF  CLSR  G      S     TEL   +P     + +V   +   
Sbjct: 173  DIMLQMGKLGAAELFKTCLSRYRG--SSITSCLSDTTELVDTTP-----NQQV--FVSSR 223

Query: 1396 XXXXXXXXXXXRALENXXXXXXXXXXXXXXXK--VPRRENPSNSMTRRLIIAKKESKMSI 1223
                          EN                  VPR   P     +R  I++ E++MS 
Sbjct: 224  RKVKKKARRSSVTAENGDQSSLPIGLRTTWNNIDVPRVRRPPKYRKKRERISRNETEMST 283

Query: 1222 GVKEAANLERIRTSLEAETGRVISFSCWAEAAGVDEKVLQQRLHFGWYCRDKLLRSTRSL 1043
            GVK  A++ERIRT LE E+G+V S SCWA AAG++EK+L + LH+GWYCRD+L++STRSL
Sbjct: 284  GVKIVADMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRDELVKSTRSL 343

Query: 1042 VFYIARNYRRLGISLEDLLQAGNVGVLQGAERFDHTRGYRFSTYIQYWIRKSMSTLVARH 863
            V ++ARNYR LGI+ EDL+QAG VGVLQGAERFDHTRGY+FSTY+QYWIRKSMST+V+RH
Sbjct: 344  VLFLARNYRGLGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRKSMSTMVSRH 403

Query: 862  SRGIHIPVSLNSVMNQIRKARRSLYNIHG-RYPNDDEISRFTGVSLAKIRLACKCPRIVG 686
            +RG+HIP S+   +N I+KAR++L   HG +Y  D+EI++ TG S+ KIR A +C ++VG
Sbjct: 404  ARGVHIPSSIIRTINHIQKARKTLKTSHGIKYAADEEIAKLTGHSVKKIRAANQCLKVVG 463

Query: 685  SIDQRMGDNLSVKFMEFTSDKSIKTPEEMVMMQHMRKDIYELLQGLQPRERQVLILRYGL 506
            SID+++GD  + KF+EFT D ++++PEE VM Q  R+DI++LL+GL+PRE+QV++LRYGL
Sbjct: 464  SIDKKVGDCFTTKFLEFTPDTTMESPEEAVMRQSARRDIHDLLEGLEPREKQVMVLRYGL 523

Query: 505  QDGRSKSLEEIGRVFKCTKEWIRKIEKSALTKVRKEEVQRNLSHYLN 365
            QD R KSLEEIG++ K +KEWIRKIE+ A+ K+R +    +L +YLN
Sbjct: 524  QDYRPKSLEEIGKLLKVSKEWIRKIERRAMAKLRDQPNAEDLRYYLN 570