BLASTX nr result
ID: Akebia23_contig00027608
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Akebia23_contig00027608 (2140 letters) Database: ./nr 38,876,450 sequences; 13,856,398,315 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD ... 563 e-157 emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera] 531 e-148 ref|XP_007222923.1| hypothetical protein PRUPE_ppa003696mg [Prun... 521 e-145 ref|XP_002308586.1| hypothetical protein POPTR_0006s25090g [Popu... 518 e-144 ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [... 513 e-142 ref|XP_004291147.1| PREDICTED: RNA polymerase sigma factor sigC-... 510 e-142 ref|XP_006450763.1| hypothetical protein CICLE_v10007968mg [Citr... 506 e-140 ref|XP_007012219.1| RNApolymerase sigma-subunit C, putative [The... 502 e-139 ref|XP_006475980.1| PREDICTED: RNA polymerase sigma factor sigC-... 502 e-139 ref|XP_006853783.1| hypothetical protein AMTR_s00056p00209700 [A... 490 e-136 ref|XP_004148429.1| PREDICTED: RNA polymerase sigma factor sigC-... 470 e-129 ref|XP_006355305.1| PREDICTED: RNA polymerase sigma factor sigC-... 468 e-129 emb|CAD20832.1| sigma factor [Spinacia oleracea] 466 e-128 ref|XP_004245130.1| PREDICTED: RNA polymerase sigma factor sigC-... 456 e-125 ref|XP_003551127.1| PREDICTED: RNA polymerase sigma factor sigC ... 444 e-122 ref|XP_004498453.1| PREDICTED: RNA polymerase sigma factor sigC-... 438 e-120 gb|EYU20393.1| hypothetical protein MIMGU_mgv1a018845mg [Mimulus... 426 e-116 ref|XP_002877947.1| predicted protein [Arabidopsis lyrata subsp.... 426 e-116 dbj|BAA22215.1| plastid RNA polymerase sigma-subunit [Arabidopsi... 424 e-115 ref|NP_190960.1| RNA polymerase sigma-subunit C [Arabidopsis tha... 422 e-115 >ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera] gi|296081598|emb|CBI20603.3| unnamed protein product [Vitis vinifera] Length = 561 Score = 563 bits (1450), Expect = e-157 Identities = 299/561 (53%), Positives = 383/561 (68%), Gaps = 6/561 (1%) Frame = -1 Query: 2029 MGFGFMLDSKWVFPIQSSFFTNSPTKQYSSSVRGKEASYESPRMSILSVIPEESEVLYKD 1850 MG GF L+ KW FPI TNSP++ +SSV+GKEAS++S R S SV E+ E LYKD Sbjct: 1 MGMGFRLNLKWDFPISCPTLTNSPSRLCTSSVQGKEASFDSTRFSFPSVTSEDCESLYKD 60 Query: 1849 SLKAYXXXXXSLQIIENQSGDKEEIKMKIGRGSHRTLYNPIDDTSVSIQDDTSTSYPMLQ 1670 K + +LQ EN E +KMKIG+ SH L+ ++ + I +D S S LQ Sbjct: 61 PFKPFACSSGALQTFENDYSAMEAMKMKIGKCSHGDLFKIVNASQAPIGEDISASVAGLQ 120 Query: 1669 VNKTSHFSSLMENIEKIDEIFVDADVVKLEKDILIQLGKLGAIKLFHVCLSRTLGLKEPT 1490 +K S FS L+EN++ ++E+F D+++V+LE+DI++QLG+LGA+KLF +CLSRTL Sbjct: 121 ASKASQFSLLLENLDILEEMFADSNMVRLERDIMVQLGRLGALKLFQICLSRTLKTSTSF 180 Query: 1489 LSTPIPITELPRDSPINGPIDDKVGNIIVXXXXXXXXXXXXXRALENXXXXXXXXXXXXX 1310 P TE R+ NG +DD + ++V RALE Sbjct: 181 DLFSAP-TEHIRECQTNGTVDDHLDKVVVRSGKKEERKSKRERALEKADNIYAFPLPSKT 239 Query: 1309 XXKVPRRENPS------NSMTRRLIIAKKESKMSIGVKEAANLERIRTSLEAETGRVISF 1148 K P R + S NS +RL+ AK E++MS GVK ANLERIR +LE E G V S Sbjct: 240 IRKGPGRPSVSTVKRTLNSRRKRLMNAKNEAEMSKGVKLVANLERIRATLEEEIGHVASL 299 Query: 1147 SCWAEAAGVDEKVLQQRLHFGWYCRDKLLRSTRSLVFYIARNYRRLGISLEDLLQAGNVG 968 S WAEAAGVD+KVLQQ+L FGWYCRD+LLRST SLV YIARNYR +G++ ED+LQAGN+G Sbjct: 300 SNWAEAAGVDKKVLQQQLQFGWYCRDELLRSTHSLVLYIARNYRGMGVAFEDILQAGNLG 359 Query: 967 VLQGAERFDHTRGYRFSTYIQYWIRKSMSTLVARHSRGIHIPVSLNSVMNQIRKARRSLY 788 VLQGAERFDHT+GYRFSTY+QYWIRKSMSTLVARH+RG+ IP +LN + QI+KAR++LY Sbjct: 360 VLQGAERFDHTKGYRFSTYVQYWIRKSMSTLVARHARGVKIPFTLNRAIGQIQKARKALY 419 Query: 787 NIHGRYPNDDEISRFTGVSLAKIRLACKCPRIVGSIDQRMGDNLSVKFMEFTSDKSIKTP 608 HGRYP+D+EI++FTG+SLAKIR A C R+VGS DQ D +EFT D SIK+P Sbjct: 420 KSHGRYPDDNEIAKFTGLSLAKIRSAGNCLRVVGSTDQSFQDCWGATILEFTPDTSIKSP 479 Query: 607 EEMVMMQHMRKDIYELLQGLQPRERQVLILRYGLQDGRSKSLEEIGRVFKCTKEWIRKIE 428 EE M Q RKDI+ LL+GL PRERQ+L+LRYG + + KSLEEIGR F +KEWIRK+E Sbjct: 480 EEGFMQQCKRKDIHNLLKGLDPRERQILVLRYGFGEQQRKSLEEIGRRFNVSKEWIRKLE 539 Query: 427 KSALTKVRKEEVQRNLSHYLN 365 K+AL +R EE+ +NL HY++ Sbjct: 540 KTALANLRDEEICQNLRHYVD 560 >emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera] Length = 611 Score = 531 bits (1368), Expect = e-148 Identities = 282/530 (53%), Positives = 363/530 (68%), Gaps = 6/530 (1%) Frame = -1 Query: 1936 VRGKEASYESPRMSILSVIPEESEVLYKDSLKAYXXXXXSLQIIENQSGDKEEIKMKIGR 1757 ++GKEAS++S R S SV E+ E LYKD K + +LQ EN E +KMKIG+ Sbjct: 82 IQGKEASFDSTRFSFPSVTSEDCESLYKDPFKPFACSSGALQTFENDYSAMEAMKMKIGK 141 Query: 1756 GSHRTLYNPIDDTSVSIQDDTSTSYPMLQVNKTSHFSSLMENIEKIDEIFVDADVVKLEK 1577 SH L+ ++ + I +D S S LQ +K S FS L+EN++ ++E+F D+++V+LE+ Sbjct: 142 CSHGDLFKIVNASQAPIGEDISASVAGLQASKASQFSLLLENLDILEEMFADSNMVRLER 201 Query: 1576 DILIQLGKLGAIKLFHVCLSRTLGLKEPTLSTPIPITELPRDSPINGPIDDKVGNIIVXX 1397 DI++QLG+LGA+KLF +CLSRTL P TE R+ NG +DD + ++V Sbjct: 202 DIMVQLGRLGALKLFQICLSRTLKTSTSFDLFSAP-TEHIRECQTNGTVDDHLDKVVVRS 260 Query: 1396 XXXXXXXXXXXRALENXXXXXXXXXXXXXXXKVPRRENPS------NSMTRRLIIAKKES 1235 RALE K P R + S NS +RL+ AK E+ Sbjct: 261 GKKEERKSKRERALEKADNIYAFPLPSKTIRKGPGRPSVSTVKRTLNSRRKRLMNAKNEA 320 Query: 1234 KMSIGVKEAANLERIRTSLEAETGRVISFSCWAEAAGVDEKVLQQRLHFGWYCRDKLLRS 1055 +MS GVK ANLERIR +LE E G V S S WAEAAGVD+KVLQQ+L FGWYCRD+LLRS Sbjct: 321 EMSKGVKLVANLERIRATLEEEIGHVASLSNWAEAAGVDKKVLQQQLQFGWYCRDELLRS 380 Query: 1054 TRSLVFYIARNYRRLGISLEDLLQAGNVGVLQGAERFDHTRGYRFSTYIQYWIRKSMSTL 875 T SLV YIARNYR +G++ ED+LQAGN+GVLQGAERFDHT+GYRFSTY+QYWIRKSMSTL Sbjct: 381 THSLVLYIARNYRGMGVAFEDILQAGNLGVLQGAERFDHTKGYRFSTYVQYWIRKSMSTL 440 Query: 874 VARHSRGIHIPVSLNSVMNQIRKARRSLYNIHGRYPNDDEISRFTGVSLAKIRLACKCPR 695 VARH+RG+ IP +LN + QI+KAR++LY HGRYP+D+EI++FTG+SLAKIR A C R Sbjct: 441 VARHARGVKIPFTLNRAIGQIQKARKALYKSHGRYPDDNEIAKFTGLSLAKIRSAGNCLR 500 Query: 694 IVGSIDQRMGDNLSVKFMEFTSDKSIKTPEEMVMMQHMRKDIYELLQGLQPRERQVLILR 515 +VGS DQ D +EFT D SIK+PEE M Q RKDI+ LL+GL PRERQ+L+LR Sbjct: 501 VVGSTDQSFQDCWGATILEFTPDTSIKSPEEGFMQQCKRKDIHNLLKGLDPRERQILVLR 560 Query: 514 YGLQDGRSKSLEEIGRVFKCTKEWIRKIEKSALTKVRKEEVQRNLSHYLN 365 YG + + KSLEEIGR F +KEWIRK+EK+AL +R EE+ +NL HY++ Sbjct: 561 YGFGEQQRKSLEEIGRRFNVSKEWIRKLEKTALANLRDEEICQNLRHYVD 610 >ref|XP_007222923.1| hypothetical protein PRUPE_ppa003696mg [Prunus persica] gi|462419859|gb|EMJ24122.1| hypothetical protein PRUPE_ppa003696mg [Prunus persica] Length = 555 Score = 521 bits (1343), Expect = e-145 Identities = 281/560 (50%), Positives = 376/560 (67%), Gaps = 5/560 (0%) Frame = -1 Query: 2029 MGFGFMLDSKWVFPIQSSFF-TNSPTKQYSSSVRGKEASYESPRMSILSVIPEESEVLYK 1853 MG GF L+ K FP+ SS + T SP+K S+SVRG+E S+ S R+S LSVI EE E K Sbjct: 1 MGLGFRLNLKCGFPVHSSHWQTTSPSKISSTSVRGREGSFNSARLSFLSVISEEGEASSK 60 Query: 1852 DSLKAYXXXXXSLQIIENQSGDKEEIKMKIGRGSHRTLYNPIDDTSVSIQDDTSTSYPML 1673 D LK Y S QI+E+ + EE+K + R + D + + + S L Sbjct: 61 DPLKVYTFPSASPQILEDGVSELEEVKT-----AFRRVPKSFSDNQMPVAEGKFISSKGL 115 Query: 1672 QVNKTSHFSSLMENIEKIDEIFVDADVVKLEKDILIQLGKLGAIKLFHVCLSRTLGLKEP 1493 + SHFS L++N+ ++E F +DV+KLEK+IL+QL +LGA+KLF +CLSRTL Sbjct: 116 EACTASHFSLLLQNLNVLEETFATSDVLKLEKEILLQLARLGALKLFDICLSRTLKTSSF 175 Query: 1492 TLSTPIPITELPRDSPINGPIDDKVGNIIVXXXXXXXXXXXXXRA----LENXXXXXXXX 1325 + IP + + + D+ VG IIV + + + Sbjct: 176 LDLSDIPTVPV-EEGKMERKEDNNVGEIIVRSGKKEERRSRKRTSDNAIVSSNSLPPKTI 234 Query: 1324 XXXXXXXKVPRRENPSNSMTRRLIIAKKESKMSIGVKEAANLERIRTSLEAETGRVISFS 1145 + + SN +RRL I+K E++MSIGVK A+LERI+ +LE ETG+V + Sbjct: 235 WKGLKKPTLSSGKRASNYRSRRLTISKNEAEMSIGVKVIADLERIKETLEKETGKVATLR 294 Query: 1144 CWAEAAGVDEKVLQQRLHFGWYCRDKLLRSTRSLVFYIARNYRRLGISLEDLLQAGNVGV 965 CWAEAAGV EKVL Q L FGWYC+D+L+RSTRSLV Y+ARNYR LG++L+DL+QAGN+G+ Sbjct: 295 CWAEAAGVHEKVLLQHLRFGWYCQDELIRSTRSLVLYLARNYRGLGVALDDLMQAGNLGL 354 Query: 964 LQGAERFDHTRGYRFSTYIQYWIRKSMSTLVARHSRGIHIPVSLNSVMNQIRKARRSLYN 785 LQGAERFDH+RGYRFSTY+QYWIRKSMS LVA+H+RG+ IP +L+ +NQI+KAR++ YN Sbjct: 355 LQGAERFDHSRGYRFSTYVQYWIRKSMSRLVAQHARGVQIPFTLSKAINQIQKARKANYN 414 Query: 784 IHGRYPNDDEISRFTGVSLAKIRLACKCPRIVGSIDQRMGDNLSVKFMEFTSDKSIKTPE 605 H +YP+D+EI++ TG+SLA+IR A C R+VGS+D +M ++ +MEFT D S+K+PE Sbjct: 415 SHMKYPDDEEIAKITGLSLARIRSASTCLRVVGSVDHKMWESSDGTYMEFTPDTSLKSPE 474 Query: 604 EMVMMQHMRKDIYELLQGLQPRERQVLILRYGLQDGRSKSLEEIGRVFKCTKEWIRKIEK 425 E VM QHM+KDI++LL+GL RERQVL+LRYGL + KSLEEIGR+F +KEWIRKIEK Sbjct: 475 ETVMRQHMKKDIHDLLKGLNLRERQVLVLRYGLNNYDPKSLEEIGRLFHVSKEWIRKIEK 534 Query: 424 SALTKVRKEEVQRNLSHYLN 365 AL K+R EE + LSHYLN Sbjct: 535 KALMKLRVEESHKYLSHYLN 554 >ref|XP_002308586.1| hypothetical protein POPTR_0006s25090g [Populus trichocarpa] gi|222854562|gb|EEE92109.1| hypothetical protein POPTR_0006s25090g [Populus trichocarpa] Length = 559 Score = 518 bits (1333), Expect = e-144 Identities = 270/559 (48%), Positives = 383/559 (68%), Gaps = 5/559 (0%) Frame = -1 Query: 2029 MGFGFMLDSKWVFPIQSSFFTNSPTKQYSSSVRGKEASYESPRMSILSVIPEESEVLYKD 1850 MG GF L KW P+QS TNS + S S RG EAS R+S LSV+ EE ++L K Sbjct: 1 MGVGFRLTPKWGSPMQSHSATNSTSMFSSFSARGMEASVNQARLSFLSVVSEEGDILNKH 60 Query: 1849 SLKAYXXXXXSLQIIENQSGDKEEIKMKIGRGSHRTLYNPIDDTSVSIQDDTSTSYPMLQ 1670 S K++ + Q +EN E +KM + + SH ++ N + + VS++++ STS+ L+ Sbjct: 61 SFKSFACSSAA-QNVENDCLQMERLKMNVDKTSHVSINNMMGNDKVSVEEEISTSHTRLR 119 Query: 1669 VNKTSHFSSLMENIEKIDEIFVDADVVKLEKDILIQLGKLGAIKLFHVCLSRTLGLKEPT 1490 TS S L++N++ ++++ D D +KLE+DIL+QLG+LGA++ F+ CLSRTL Sbjct: 120 ERMTSRISFLLDNLDTLEKLVADLDALKLERDILLQLGRLGALEFFNACLSRTLQTSNVL 179 Query: 1489 LSTPIPITELPRDSPINGPIDDKVGNIIVXXXXXXXXXXXXXRALENXXXXXXXXXXXXX 1310 + +P TE +S +G + D G +V RA + Sbjct: 180 DLSAVP-TENTGESKTDGMLGDLTGKTVVRTGKKEERKFRRERAASDNGKKTTSLSLPSK 238 Query: 1309 XXK--VPRR---ENPSNSMTRRLIIAKKESKMSIGVKEAANLERIRTSLEAETGRVISFS 1145 + +P+ + S+S +RR +IA+ E+KM+ GVK A++LERIRT+LE ETG+V+S S Sbjct: 239 TVQNNLPKPTFVKRTSSSSSRRSLIARNEAKMTRGVKVASDLERIRTTLEEETGQVVSLS 298 Query: 1144 CWAEAAGVDEKVLQQRLHFGWYCRDKLLRSTRSLVFYIARNYRRLGISLEDLLQAGNVGV 965 CWAEA G+D+KVLQQ+L FGWYCRD+L+++T SLV YIARNYR +GI++EDL+QAGN+G+ Sbjct: 299 CWAEATGLDKKVLQQQLQFGWYCRDELIKNTHSLVLYIARNYRGMGIAMEDLIQAGNLGL 358 Query: 964 LQGAERFDHTRGYRFSTYIQYWIRKSMSTLVARHSRGIHIPVSLNSVMNQIRKARRSLYN 785 LQGAERFD TRGYRFSTY+QYWIRKSM +V RH+RGI IP +L+ +N+I+KAR++L N Sbjct: 359 LQGAERFDPTRGYRFSTYVQYWIRKSMLKIVERHARGIQIPYALSRSINKIQKARKALSN 418 Query: 784 IHGRYPNDDEISRFTGVSLAKIRLACKCPRIVGSIDQRMGDNLSVKFMEFTSDKSIKTPE 605 HGRYP+D E+++FTG+SLAKI A KC R+V S+DQ++G+ K+ EF D SI+ PE Sbjct: 419 SHGRYPDDWEVAKFTGLSLAKIESAQKCLRVVASLDQKIGEGHYAKYSEFIPDMSIQNPE 478 Query: 604 EMVMMQHMRKDIYELLQGLQPRERQVLILRYGLQDGRSKSLEEIGRVFKCTKEWIRKIEK 425 E VM QHMR++IY+LL+GL RE+QV++LRYG +D + KSL EIGR+F+ +KE +RKIEK Sbjct: 479 EAVMRQHMREEIYDLLRGLDSREKQVMVLRYGFKDNQPKSLAEIGRLFRVSKERVRKIEK 538 Query: 424 SALTKVRKEEVQRNLSHYL 368 + K+R E ++RNLS Y+ Sbjct: 539 KIMIKLRDEGIRRNLSRYM 557 >ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis] gi|223544309|gb|EEF45830.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis] Length = 560 Score = 513 bits (1321), Expect = e-142 Identities = 282/566 (49%), Positives = 381/566 (67%), Gaps = 11/566 (1%) Frame = -1 Query: 2029 MGFGFMLDSKWVFPIQSSFFTNSPTKQYSSS----VRGKEASYESPRMSILSVIPEESEV 1862 MGFGF L+ K FP S NSP++ SS VRG+EA+ R+S LSVI EE ++ Sbjct: 1 MGFGFRLNLKLDFPFHSP---NSPSRLSSSPSSSFVRGREATSYQSRLSFLSVISEEGDI 57 Query: 1861 LYKDSLKAYXXXXXSLQIIENQSGDKEEIKMKIGRGSHRTLYNPIDDTSVSIQDDTSTSY 1682 ++D LK Y +Q +EN+ E K+ G+ SH L N I D VS+++D S Sbjct: 58 AHRDPLKTYAYSYA-VQTVENEHSQGEGFKVNFGKRSHFGL-NIIGDAEVSLKEDIFVS- 114 Query: 1681 PMLQVNKTSHFSSLMENIEKIDEIFVDADVVKLEKDILIQLGKLGAIKLFHVCLSRTLGL 1502 P +TS FS L+EN+ +++ F D+D KLE+DIL+QLGKLGA+KLF+ CL+RTL Sbjct: 115 PSSTKERTSRFSLLLENLNILEQSFADSDASKLEEDILLQLGKLGALKLFNTCLTRTLET 174 Query: 1501 KEPTLSTPIPITELPRDSPINGPIDDKVGNIIVXXXXXXXXXXXXXRALE-------NXX 1343 L TE+ + ING + ++V RA + Sbjct: 175 TN-VLEVSDVHTEIIGECNINGTSINNQIKVVVHTAKKEERKSRRERASARKGHKSPSLP 233 Query: 1342 XXXXXXXXXXXXXKVPRRENPSNSMTRRLIIAKKESKMSIGVKEAANLERIRTSLEAETG 1163 V + S S +RRLIIA+ E++M+ G+K A+LE+IRT+LE ET Sbjct: 234 LPSRPIQSGSEKPTVSSGKKASKSKSRRLIIARNEAEMARGIKVLADLEKIRTTLEEETE 293 Query: 1162 RVISFSCWAEAAGVDEKVLQQRLHFGWYCRDKLLRSTRSLVFYIARNYRRLGISLEDLLQ 983 RV+S SCWAEAAG+D KVLQQ+L FGWYCRD+L++STRSLV Y ARNYR GI+LEDLLQ Sbjct: 294 RVVSLSCWAEAAGLDVKVLQQQLSFGWYCRDELIKSTRSLVLYFARNYRGTGIALEDLLQ 353 Query: 982 AGNVGVLQGAERFDHTRGYRFSTYIQYWIRKSMSTLVARHSRGIHIPVSLNSVMNQIRKA 803 AGN+GVL+GAERFDHTRGYRFSTY+QYWIRKSMS +V+R +RGI IP +L+ + QI+KA Sbjct: 354 AGNLGVLEGAERFDHTRGYRFSTYVQYWIRKSMSKIVSRLARGIQIPCTLSRAIYQIQKA 413 Query: 802 RRSLYNIHGRYPNDDEISRFTGVSLAKIRLACKCPRIVGSIDQRMGDNLSVKFMEFTSDK 623 R++L +G+YP+DDEI+++TG+SLAKI A +C R+VGSIDQ++G++L+ K++EF D Sbjct: 414 RKALTTSNGKYPDDDEIAKYTGLSLAKIESASRCLRVVGSIDQKIGESLNAKYLEFLPDT 473 Query: 622 SIKTPEEMVMMQHMRKDIYELLQGLQPRERQVLILRYGLQDGRSKSLEEIGRVFKCTKEW 443 S+++PEE+VM QHM +D++ LL+ L RERQVLILR+GL D + KSLEEIGR F +KEW Sbjct: 474 SVQSPEEVVMRQHMIQDMHNLLRSLDSRERQVLILRFGLNDYQPKSLEEIGRHFHVSKEW 533 Query: 442 IRKIEKSALTKVRKEEVQRNLSHYLN 365 +R++EK +T++R EE RNL HY+N Sbjct: 534 VRRLEKRVMTRLRNEETCRNLRHYIN 559 >ref|XP_004291147.1| PREDICTED: RNA polymerase sigma factor sigC-like [Fragaria vesca subsp. vesca] Length = 545 Score = 510 bits (1314), Expect = e-142 Identities = 282/561 (50%), Positives = 382/561 (68%), Gaps = 7/561 (1%) Frame = -1 Query: 2029 MGFGFMLDSKWVFPIQSSFF-TNSPTKQYSSSVRGKEASYESPRMSILSVIPEESEVLYK 1853 MG GF L+ K FPI +S + TNSP+K SSSVRG+E S+ S +S LSVI EE E K Sbjct: 1 MGLGFRLNLKCGFPIHNSHWQTNSPSKLPSSSVRGREGSFSSAGLSFLSVISEECETSSK 60 Query: 1852 DSLKAYXXXXXSLQIIENQSGDKEEIKMKIGRGSHRTLYNPIDDTSVSIQDDTSTSYPML 1673 D LK Y S Q++++ + EE KM R S N IDD S Sbjct: 61 DPLKVYTCPSASPQLLDDGLSEMEE-KMNPRRMSKSGSANMIDDKEYSFMSSAGL----- 114 Query: 1672 QVNKTSHFSSLMENIEKIDEIFVDADVVKLEKDILIQLGKLGAIKLFHVCLSRTLGLKEP 1493 +TSH++ L++N+ ++E F D+ V KLEK+IL+QLG+LGA+KLF +CLSRTL Sbjct: 115 ---RTSHYTLLLQNLNVLEETFADSGVSKLEKEILLQLGRLGALKLFEICLSRTL----- 166 Query: 1492 TLSTPIPITELPRDSPINGPIDDKVGNIIVXXXXXXXXXXXXXRALENXXXXXXXXXXXX 1313 S+ + ++++P + PI ++ IV + ++ Sbjct: 167 KTSSFLDLSDIPTE-PIEKHKTERKN--IVRSGKKEEQKSRKRTSYDSKKFSGTLPVKQM 223 Query: 1312 XXXKVPRRENPS------NSMTRRLIIAKKESKMSIGVKEAANLERIRTSLEAETGRVIS 1151 ++ NPS NS +RRL++AK E++MS+GVK A+LER++ +LE ETG+V + Sbjct: 224 REGF--KKPNPSSVRRASNSRSRRLMMAKNEAEMSVGVKVIADLERLKVTLEKETGKVPT 281 Query: 1150 FSCWAEAAGVDEKVLQQRLHFGWYCRDKLLRSTRSLVFYIARNYRRLGISLEDLLQAGNV 971 CWAEAAGVDEKVLQQ+LHFGWYC+D+L+RSTRSLV Y+ARNYR LG++L+DLLQAGN+ Sbjct: 282 LRCWAEAAGVDEKVLQQQLHFGWYCQDELVRSTRSLVLYLARNYRGLGVALDDLLQAGNL 341 Query: 970 GVLQGAERFDHTRGYRFSTYIQYWIRKSMSTLVARHSRGIHIPVSLNSVMNQIRKARRSL 791 G+LQGAERFD +RGYRFSTY+QYWIRKSMS LVA+H+RGI IP +L+ +N+I+KAR++ Sbjct: 342 GLLQGAERFDPSRGYRFSTYVQYWIRKSMSRLVAQHARGIKIPNTLSKAINRIQKARKAN 401 Query: 790 YNIHGRYPNDDEISRFTGVSLAKIRLACKCPRIVGSIDQRMGDNLSVKFMEFTSDKSIKT 611 YN H +YP+D+EI++ TG+SLAKI A +C R+VGS+D ++ + + +MEFT D +++T Sbjct: 402 YNSHMKYPDDEEIAKITGLSLAKISSASRCLRVVGSVDHKIWECSAGTYMEFTPDIAVET 461 Query: 610 PEEMVMMQHMRKDIYELLQGLQPRERQVLILRYGLQDGRSKSLEEIGRVFKCTKEWIRKI 431 PEE VM QHM+ DI+ LL+GL RE++VL LRYGL KSLEEIGR+F +KEWIRKI Sbjct: 462 PEESVMRQHMKNDIHVLLEGLNSREKKVLALRYGLNYCNPKSLEEIGRLFHVSKEWIRKI 521 Query: 430 EKSALTKVRKEEVQRNLSHYL 368 EK+ALTK+R EE +NLSHYL Sbjct: 522 EKNALTKLRNEESNKNLSHYL 542 >ref|XP_006450763.1| hypothetical protein CICLE_v10007968mg [Citrus clementina] gi|557553989|gb|ESR64003.1| hypothetical protein CICLE_v10007968mg [Citrus clementina] Length = 534 Score = 506 bits (1302), Expect = e-140 Identities = 272/561 (48%), Positives = 373/561 (66%), Gaps = 7/561 (1%) Frame = -1 Query: 2029 MGFGFMLDSKWVFPIQSSFFTNSPTKQYSSSVRGKEASYESPRMSILSVIPEESEVLYKD 1850 MG GF L+ KWV P+QS FFT S + S+SVRG+E S+ S R+S LS I E+S ++D Sbjct: 1 MGMGFRLNLKWVSPVQSHFFTTSSCRLSSTSVRGREGSFNSARLSFLSTISEDSASYFQD 60 Query: 1849 SLKAYXXXXXSLQIIENQSGDKEEIKMKIGRGSHRTLYNPIDDTSVSIQDDTSTSYPMLQ 1670 +KAY + Q +EN + EEI+ K TS QD +S S Sbjct: 61 PVKAYTCSFVNTQTVENDYSETEEIRQK--------------STSCIGQDASSRS----- 101 Query: 1669 VNKTSHFSSLMENIEKIDEIFVDADVVKLEKDILIQLGKLGAIKLFHVCLSRTLGLKEPT 1490 F LMEN++ ++ F D+D ++LE++IL QLGKLGA+KLF+ LSR + Sbjct: 102 -----DFRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIV-----K 151 Query: 1489 LSTPIPITEL-PRDSPINGPIDDKVGNIIVXXXXXXXXXXXXXRALENXXXXXXXXXXXX 1313 S + ++++ + +N D +G I+V R E Sbjct: 152 TSNVLDLSDVHTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLLSLPSE 211 Query: 1312 XXXKVPRR------ENPSNSMTRRLIIAKKESKMSIGVKEAANLERIRTSLEAETGRVIS 1151 + ++ E NS RRL+IA+ E++MS GV+ ANLERI+T+LE E+G+ S Sbjct: 212 ALQEGLKQPTIFSPERALNSRGRRLMIARNEAEMSKGVQVVANLERIKTTLEKESGKAAS 271 Query: 1150 FSCWAEAAGVDEKVLQQRLHFGWYCRDKLLRSTRSLVFYIARNYRRLGISLEDLLQAGNV 971 +CWA+AAGV E+VL+Q L FGWYCR++L++STR LV ++ARNYR LGI DLLQAGNV Sbjct: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331 Query: 970 GVLQGAERFDHTRGYRFSTYIQYWIRKSMSTLVARHSRGIHIPVSLNSVMNQIRKARRSL 791 GVLQGAERFDHTRGY+FSTY+QYWIRKS+S +VARH+RGI IP LN +++I+KAR++L Sbjct: 332 GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKAL 391 Query: 790 YNIHGRYPNDDEISRFTGVSLAKIRLACKCPRIVGSIDQRMGDNLSVKFMEFTSDKSIKT 611 N HG+YP D EI+++TG+SLA+IR A +C RIVGSIDQ++GD L+ K++EF D+S+K+ Sbjct: 392 TNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKS 451 Query: 610 PEEMVMMQHMRKDIYELLQGLQPRERQVLILRYGLQDGRSKSLEEIGRVFKCTKEWIRKI 431 P+E+VM QHM+KD++ +L+ L RERQVL+LRYGL D R KSLEEIG++F +KEWIRK+ Sbjct: 452 PKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKL 511 Query: 430 EKSALTKVRKEEVQRNLSHYL 368 EK A+TK+R E R+LSH+L Sbjct: 512 EKKAMTKLRDSETCRDLSHFL 532 >ref|XP_007012219.1| RNApolymerase sigma-subunit C, putative [Theobroma cacao] gi|508782582|gb|EOY29838.1| RNApolymerase sigma-subunit C, putative [Theobroma cacao] Length = 848 Score = 502 bits (1293), Expect = e-139 Identities = 280/561 (49%), Positives = 370/561 (65%), Gaps = 11/561 (1%) Frame = -1 Query: 2014 MLDSKWVFPIQSSFFTNSPTKQYSSSVRGKEASYESPRMSILSVIPEESEVLYKDSLKAY 1835 +L+ K V P+ S F NSP++ SS V + KD LKAY Sbjct: 316 VLNLKGVCPVPSHFLANSPSRLPSSGV-----------------------LSLKDPLKAY 352 Query: 1834 XXXXXSLQIIENQSGDKEEIKMKIGRGS--HRTLYNPIDDTSVSIQDDTSTSYPMLQVNK 1661 Q +E + EE+K+ IG+GS H ID T I D S+S Q K Sbjct: 353 ASSAAP-QTLEKGCLEIEEMKVNIGKGSQAHSHSLTMIDKTHELIGGDKSSSRTSPQACK 411 Query: 1660 TSHFSSLMENIEKIDEIFVDADVVKLEKDILIQLGKLGAIKLFHVCLSRTLGLKEPTLST 1481 SH+S LMEN++ ++E F D+DV+ LE++IL+QLG+ GA+KLF+ CLSRTL S Sbjct: 412 ASHYSLLMENLDVLEETFADSDVLTLEREILLQLGRFGALKLFNTCLSRTL-----KASN 466 Query: 1480 PIPITELPRDSP---INGPIDDKVGNIIVXXXXXXXXXXXXXRALENXXXXXXXXXXXXX 1310 + ++++P +S +N +D + NI+V RALEN Sbjct: 467 ILDLSDVPANSGDCNMNLSVDGQKDNIVVCSRKKKQRKKIRERALENPTIISTQLMPSNT 526 Query: 1309 XXK------VPRRENPSNSMTRRLIIAKKESKMSIGVKEAANLERIRTSLEAETGRVISF 1148 V + S+S +RRL IA+ E++MS GVK ANLERIRT+LE ETGR S Sbjct: 527 LHGRFQKPKVSSAKRVSDSRSRRLRIARNEAEMSKGVKVVANLERIRTTLEEETGRAASL 586 Query: 1147 SCWAEAAGVDEKVLQQRLHFGWYCRDKLLRSTRSLVFYIARNYRRLGISLEDLLQAGNVG 968 SCWAEAAGV EKVLQQ L FGWYCRD+LLRSTRSLV Y ARNYR LGI+ EDL+QAG++G Sbjct: 587 SCWAEAAGVSEKVLQQHLRFGWYCRDELLRSTRSLVLYFARNYRGLGIAHEDLIQAGSLG 646 Query: 967 VLQGAERFDHTRGYRFSTYIQYWIRKSMSTLVARHSRGIHIPVSLNSVMNQIRKARRSLY 788 VLQGAERFDHTRGYRFSTY+Q+WIRKS+S +VARH+RGI +P +L+ + QI+KAR++L Sbjct: 647 VLQGAERFDHTRGYRFSTYVQFWIRKSVSRIVARHARGIQVPCTLSRAIVQIQKARKALS 706 Query: 787 NIHGRYPNDDEISRFTGVSLAKIRLACKCPRIVGSIDQRMGDNLSVKFMEFTSDKSIKTP 608 HG+YP++D I++FTG+SLAKIR A KC R+VGSIDQ++GD ++ K++EF D S+++P Sbjct: 707 KSHGKYPDEDAIAKFTGLSLAKIRSANKCMRVVGSIDQKIGDCMNAKYLEFIPDLSVRSP 766 Query: 607 EEMVMMQHMRKDIYELLQGLQPRERQVLILRYGLQDGRSKSLEEIGRVFKCTKEWIRKIE 428 E+ VM QHM++DI++LL GL RERQV++LRYGL+ KSLEEIGR+F +KEWIR+IE Sbjct: 767 EKTVMRQHMKEDIHDLLNGLDARERQVMVLRYGLKGSPPKSLEEIGRLFHVSKEWIRRIE 826 Query: 427 KSALTKVRKEEVQRNLSHYLN 365 A+ K+R +E RNLSHYL+ Sbjct: 827 MKAMKKLRDKETCRNLSHYLD 847 >ref|XP_006475980.1| PREDICTED: RNA polymerase sigma factor sigC-like [Citrus sinensis] Length = 534 Score = 502 bits (1292), Expect = e-139 Identities = 270/561 (48%), Positives = 372/561 (66%), Gaps = 7/561 (1%) Frame = -1 Query: 2029 MGFGFMLDSKWVFPIQSSFFTNSPTKQYSSSVRGKEASYESPRMSILSVIPEESEVLYKD 1850 MG GF L+ KWV P+QS FFT S + S+SVRG+E S+ S R+S LS I E+S ++D Sbjct: 1 MGMGFRLNLKWVSPVQSHFFTTSSCRLSSTSVRGREGSFNSARLSFLSTISEDSASYFQD 60 Query: 1849 SLKAYXXXXXSLQIIENQSGDKEEIKMKIGRGSHRTLYNPIDDTSVSIQDDTSTSYPMLQ 1670 +KAY + Q +EN + EEI+ K TS QD +S S Sbjct: 61 PVKAYTCSFVNTQTVENDYSETEEIRQK--------------STSCIGQDASSRS----- 101 Query: 1669 VNKTSHFSSLMENIEKIDEIFVDADVVKLEKDILIQLGKLGAIKLFHVCLSRTLGLKEPT 1490 F LMEN++ ++ F D+D ++LE++IL QLGKLGA+KLF+ LSR + Sbjct: 102 -----DFRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIV-----K 151 Query: 1489 LSTPIPITEL-PRDSPINGPIDDKVGNIIVXXXXXXXXXXXXXRALENXXXXXXXXXXXX 1313 S + ++++ + ++ D +G I+V R E Sbjct: 152 TSNVLDLSDVHTEEQKMDDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETYLLSLPSE 211 Query: 1312 XXXKVPRR------ENPSNSMTRRLIIAKKESKMSIGVKEAANLERIRTSLEAETGRVIS 1151 + ++ E NS RRL+IA+ E++MS GV+ ANLERI+T+LE E+G+ Sbjct: 212 ALQEGLKQPTIFSAERALNSRGRRLMIARNEAEMSKGVQVVANLERIKTTLEKESGKAAR 271 Query: 1150 FSCWAEAAGVDEKVLQQRLHFGWYCRDKLLRSTRSLVFYIARNYRRLGISLEDLLQAGNV 971 +CWA+AAGV E+VL+Q L FGWYCR++L++STR LV ++ARNYR LGI DLLQAGNV Sbjct: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331 Query: 970 GVLQGAERFDHTRGYRFSTYIQYWIRKSMSTLVARHSRGIHIPVSLNSVMNQIRKARRSL 791 GVLQGAERFDHTRGY+FSTY+QYWIRKS+S +VARH+RGI IP LN +++I+KAR++L Sbjct: 332 GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKAL 391 Query: 790 YNIHGRYPNDDEISRFTGVSLAKIRLACKCPRIVGSIDQRMGDNLSVKFMEFTSDKSIKT 611 N HG+YP D EI+++TG+SLA+IR A +C RIVGSIDQ++GD L+ K++EF D+S+K+ Sbjct: 392 TNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKS 451 Query: 610 PEEMVMMQHMRKDIYELLQGLQPRERQVLILRYGLQDGRSKSLEEIGRVFKCTKEWIRKI 431 P+E+VM QHM+KD++ +L+ L RERQVL+LRYGL D R KSLEEIG++F +KEWIRK+ Sbjct: 452 PKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKL 511 Query: 430 EKSALTKVRKEEVQRNLSHYL 368 EK A+TK+R E R+LSH+L Sbjct: 512 EKKAMTKLRDSETCRDLSHFL 532 >ref|XP_006853783.1| hypothetical protein AMTR_s00056p00209700 [Amborella trichopoda] gi|548857444|gb|ERN15250.1| hypothetical protein AMTR_s00056p00209700 [Amborella trichopoda] Length = 529 Score = 490 bits (1262), Expect = e-136 Identities = 271/533 (50%), Positives = 353/533 (66%), Gaps = 8/533 (1%) Frame = -1 Query: 1939 SVRGKEASYESPRMSILSVIPEESEVLYKDSLKAYXXXXXSLQIIENQSGDKEEIKMKIG 1760 +V+ K+ S ES + S LSVIPEE+E L D K + +Q + EE+KM I Sbjct: 6 AVKSKQPSIESAKASTLSVIPEETERLLGDCTKDFPYFFGDIQNANSSHDITEEMKMNIN 65 Query: 1759 RGSHRTLYNPIDDTSVSIQDDTSTSYPMLQVNKTSHFSSLMENIEKIDEIFVDADVVKLE 1580 + ID + I +DT ++ L HFS L EN+EKI+ I VD+ +LE Sbjct: 66 KNKPDASLYVIDKAELPIAEDTFSNVAGLP-----HFSFLFENLEKIEGIIVDSGNARLE 120 Query: 1579 KDILIQLGKLGAIKLFHVCLSRTLGLKEPTLSTPIPITELPRDSPINGPIDDKVGNIIVX 1400 ++IL+ + +LGA+KLFH LSRTL K+P + + +T + + P+D++ IV Sbjct: 121 REILLHIERLGALKLFHAFLSRTL--KDPKI---LDVTGTCPEHAMVQPMDEQADGYIVS 175 Query: 1399 XXXXXXXXXXXXRALENXXXXXXXXXXXXXXXKVPRREN--------PSNSMTRRLIIAK 1244 RAL+ K + N P NS +R + A+ Sbjct: 176 SGKKVERKAQRERALKKVTDEPIVCSSLKRVKKSTKSINAALTHKGHPGNSKSRSHLRAQ 235 Query: 1243 KESKMSIGVKEAANLERIRTSLEAETGRVISFSCWAEAAGVDEKVLQQRLHFGWYCRDKL 1064 E +MS GV+E A LE+IR +LE GR SFS WAEAAG++EKVL+Q+LHFGW+CRDKL Sbjct: 236 SEVEMSRGVQEVAKLEKIRANLEENLGRDASFSVWAEAAGINEKVLKQQLHFGWFCRDKL 295 Query: 1063 LRSTRSLVFYIARNYRRLGISLEDLLQAGNVGVLQGAERFDHTRGYRFSTYIQYWIRKSM 884 LRSTR LV Y+A++YR GI EDLLQAG++GVLQGAERFDHTRGYRFSTY+QYWIRKS+ Sbjct: 296 LRSTRPLVMYLAKSYRGRGIGFEDLLQAGSLGVLQGAERFDHTRGYRFSTYVQYWIRKSL 355 Query: 883 STLVARHSRGIHIPVSLNSVMNQIRKARRSLYNIHGRYPNDDEISRFTGVSLAKIRLACK 704 S LVARHSRG+ IP++LN V+NQ KA+R+L+ +HGR+P + EI+ FTG+SL +RLA K Sbjct: 356 SALVARHSRGVQIPMALNKVLNQTVKAKRALHQMHGRHPREVEIAEFTGLSLVNVRLANK 415 Query: 703 CPRIVGSIDQRMGDNLSVKFMEFTSDKSIKTPEEMVMMQHMRKDIYELLQGLQPRERQVL 524 C R+ GSIDQR+GDN +ME T+D I+TPE+MVM QHMR+ I+E+L L PRE+QVL Sbjct: 416 CLRVHGSIDQRIGDNWGATYMEVTADTFIETPEKMVMKQHMREAIHEVLVNLHPREKQVL 475 Query: 523 ILRYGLQDGRSKSLEEIGRVFKCTKEWIRKIEKSALTKVRKEEVQRNLSHYLN 365 +LRYGL DGR KSLEEIGR++ TKEWIRKIEK AL KVRKEEVQ NL+ +LN Sbjct: 476 MLRYGLWDGRCKSLEEIGRLYNVTKEWIRKIEKMALEKVRKEEVQCNLNFFLN 528 >ref|XP_004148429.1| PREDICTED: RNA polymerase sigma factor sigC-like [Cucumis sativus] gi|449507267|ref|XP_004162982.1| PREDICTED: RNA polymerase sigma factor sigC-like [Cucumis sativus] Length = 559 Score = 470 bits (1209), Expect = e-129 Identities = 264/561 (47%), Positives = 364/561 (64%), Gaps = 6/561 (1%) Frame = -1 Query: 2029 MGFGFMLDSKWVFPIQSSFFTNSPTKQYSSSVRGKEASYESPRMSILSVIPEESEVLYKD 1850 MG F + +W F IQ+ NSP+K + +G+EA++ S R+S S I EE E + ++ Sbjct: 1 MGTSFRPNLRWGFQIQTHSLKNSPSKLSPHASKGREAAFNSGRLSFFSSICEEGESIPRE 60 Query: 1849 SLKAYXXXXXSLQIIENQSGDKEEIKMKIGRGSHRTLYNPIDDTSVSIQDDTSTSYPMLQ 1670 +LK Y + Q N + EEI+M G S ++ I T S +D +S L Sbjct: 61 TLKTYTCLSEAPQTSANDLLNLEEIEMNSGAKSLGPMHYGIKSTRPSKVEDNFSSCTSLP 120 Query: 1669 VNKTSHFSSLMENIEKIDEIFVDADVVKLEKDILIQLGKLGAIKLFHVCLSRTLGLKEPT 1490 K S F LMEN++ ++E F ++ ++ LE+DI++QL KLGA++ F+ CLSRTL Sbjct: 121 TGKASPFGILMENLDVLEETFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFH 180 Query: 1489 LSTPIPITELPRDSPINGPIDDKVGNIIVXXXXXXXXXXXXXRALENXXXXXXXXXXXXX 1310 S+ +PI E D +N +D+ N+ V RA++N Sbjct: 181 DSSGLPI-EGGEDHNVNQKTNDQNDNVTVYSAKKAGRRSVKKRAMDNADKIASRLLTTRA 239 Query: 1309 XXK------VPRRENPSNSMTRRLIIAKKESKMSIGVKEAANLERIRTSLEAETGRVISF 1148 + V R+ SNS RRLI+A E++MS GVK ANLERIR +LE E+GR+ S Sbjct: 240 VKEKIHRSTVFSRKKSSNSSKRRLIVAINEAEMSTGVKVVANLERIRETLEKESGRIASM 299 Query: 1147 SCWAEAAGVDEKVLQQRLHFGWYCRDKLLRSTRSLVFYIARNYRRLGISLEDLLQAGNVG 968 SCWAEAA VD K LQ++L FG +CRD+LLRST SLV ++A+ YR G+ +EDL+QAG +G Sbjct: 300 SCWAEAASVDIKDLQKQLQFGSFCRDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALG 359 Query: 967 VLQGAERFDHTRGYRFSTYIQYWIRKSMSTLVARHSRGIHIPVSLNSVMNQIRKARRSLY 788 VLQG ERFD RG+R STYIQYWIRKSMS +VAR+SRGI IP SL +NQI+KAR+ L Sbjct: 360 VLQGVERFDPKRGFRISTYIQYWIRKSMSRVVARNSRGIQIPRSLTKAINQIQKARKVL- 418 Query: 787 NIHGRYPNDDEISRFTGVSLAKIRLACKCPRIVGSIDQRMGDNLSVKFMEFTSDKSIKTP 608 N GR +DD+I+R TG+ LAK+R+A C ++VGS DQ+MGD +++K+MEFT+D SI++P Sbjct: 419 NHSGRRYSDDDIARATGLPLAKVRVASNCLKVVGSNDQKMGDGVNMKYMEFTADMSIQSP 478 Query: 607 EEMVMMQHMRKDIYELLQGLQPRERQVLILRYGLQDGRSKSLEEIGRVFKCTKEWIRKIE 428 EE V + M+KDI+ +LQ L+ RERQVL+LRYGL D KSLEEIG++ +KEW+RKIE Sbjct: 479 EETVKRKLMKKDIFNILQRLESRERQVLVLRYGLVDFEPKSLEEIGKLLHISKEWVRKIE 538 Query: 427 KSALTKVRKEEVQRNLSHYLN 365 K A+TK++ EE ++LSHYL+ Sbjct: 539 KKAMTKLKNEETVKHLSHYLD 559 >ref|XP_006355305.1| PREDICTED: RNA polymerase sigma factor sigC-like [Solanum tuberosum] Length = 555 Score = 468 bits (1204), Expect = e-129 Identities = 257/560 (45%), Positives = 358/560 (63%), Gaps = 10/560 (1%) Frame = -1 Query: 2020 GFMLDSKWVFPIQSSFFTNSPTKQYSSSVRGKEASYESPRMSILSVIPEESEVLYKDSLK 1841 GF L KW F +Q F +NS + S S +G+EA Y+ P S+ I + E + D + Sbjct: 2 GFRLHLKWGFSVQPPFSSNSSSWPSSHSFKGREALYD-PARSLKPFITGDCEPSHSDPFR 60 Query: 1840 AYXXXXXSLQIIENQSGDKEEIKMKIGRGSHRTLYNPIDDTSVSIQDDTSTSYPMLQVNK 1661 Q+ + + EIK + GRGS +Y I + I D L K Sbjct: 61 VQTCLSDP-QLWTSDTSVTTEIKTRNGRGSPSNVYGDIGSHKIGISPDGEKP-TYLNTTK 118 Query: 1660 TSHFSSLMENIEKIDEIFVDADVVKLEKDILIQLGKLGAIKLFHVCLSRTLGLKEPTLST 1481 + HFS LM+N++ ++ +F D+++ +LE+DIL+QL KLGA++ FH CLSRT ST Sbjct: 119 SLHFSLLMKNLDLLENMFADSEMSRLERDILVQLEKLGALEFFHTCLSRT-----HHSST 173 Query: 1480 PIPITELPRDSPINGPIDDKVGN----IIVXXXXXXXXXXXXXRALENXXXXXXXXXXXX 1313 + ++PR+ DD VGN ++V RA N Sbjct: 174 FPKVLDVPRELIKEVEKDDLVGNAIDKVVVRSRKKQERKSRRNRASRNANDIITVQPHTK 233 Query: 1312 XXXKVPRR------ENPSNSMTRRLIIAKKESKMSIGVKEAANLERIRTSLEAETGRVIS 1151 + ++ + S +R IAK E++MS GVK A LERIR+ LE ETGRV + Sbjct: 234 NIQEDLQQPKFYSGKRTQASRNKRQKIAKNEAEMSRGVKLVAQLERIRSILEEETGRVAT 293 Query: 1150 FSCWAEAAGVDEKVLQQRLHFGWYCRDKLLRSTRSLVFYIARNYRRLGISLEDLLQAGNV 971 FS WAEAAG+++K LQQRLHFGWYCRD+LL+STRSLV Y+ARNYR LG++ EDL+QAGN+ Sbjct: 294 FSSWAEAAGIEQKELQQRLHFGWYCRDELLKSTRSLVLYLARNYRGLGVAFEDLIQAGNM 353 Query: 970 GVLQGAERFDHTRGYRFSTYIQYWIRKSMSTLVARHSRGIHIPVSLNSVMNQIRKARRSL 791 GVLQGA RFDHTRGY+FSTY+QYWIRKS+S LVA+H+RG+ IP ++ V+NQI KAR++L Sbjct: 354 GVLQGAVRFDHTRGYKFSTYVQYWIRKSLSKLVAQHARGVRIPFTICKVINQIHKARKTL 413 Query: 790 YNIHGRYPNDDEISRFTGVSLAKIRLACKCPRIVGSIDQRMGDNLSVKFMEFTSDKSIKT 611 HG++P DDEI++FTG+S A+I +A KC R+VGSIDQ++GD +S K +E T DKSI + Sbjct: 414 SRSHGKFPADDEIAKFTGLSTARIAMASKCLRVVGSIDQKVGDCISAKVLELTPDKSITS 473 Query: 610 PEEMVMMQHMRKDIYELLQGLQPRERQVLILRYGLQDGRSKSLEEIGRVFKCTKEWIRKI 431 PEE VM Q + ++Y LL+ L P+E+QV+ R+GL+ + KSLEEIGR++ +KEWIR+I Sbjct: 474 PEETVMRQDIVDNMYSLLESLDPKEQQVIYFRFGLETHQRKSLEEIGRLYGVSKEWIRRI 533 Query: 430 EKSALTKVRKEEVQRNLSHY 371 E+ ALTK+R + ++++HY Sbjct: 534 ERRALTKLRNADYFQHITHY 553 >emb|CAD20832.1| sigma factor [Spinacia oleracea] Length = 548 Score = 466 bits (1198), Expect = e-128 Identities = 257/561 (45%), Positives = 362/561 (64%), Gaps = 6/561 (1%) Frame = -1 Query: 2029 MGFGFMLDS-KWVFPIQSSFFTNSPTKQYSSSVRGKEASYESPRMSILSVIPEESEVLYK 1853 MGFG L+ + V P S FT + + S+S RGKE + S R+S+L++ +ESE L K Sbjct: 1 MGFGCKLNMMRCVLPSLRSPFTTNSSPPCSTSFRGKELDFGSARLSLLTIGFDESETLRK 60 Query: 1852 DSLKAYXXXXXSLQIIENQSGDKEEIKMKIGRGSHRTLYNPIDDTSVSIQDDTSTSYPML 1673 D+L+ + +EN D ++ I + S + L I DT V D S + Sbjct: 61 DTLRPHAGSSSVPLTVEN---DYSNLETTISKRSCKDL---ISDTEVLSDRDVSVYVRSV 114 Query: 1672 QVNKTSHFSSLMENIEKIDEIFVDADVVKLEKDILIQLGKLGAIKLFHVCLSRTLGLKEP 1493 Q SHF +LM NI ++ D++++KLEKDIL+QLG+LGA++LFH CLSR + + + Sbjct: 115 QSCSASHFHTLMANINLLENKVSDSELLKLEKDILVQLGRLGALQLFHACLSRIIDMSD- 173 Query: 1492 TLSTPIPITELPRDSPINGPIDDKVGNIIVXXXXXXXXXXXXXRALE-----NXXXXXXX 1328 P ITE D N D+++ +V R L+ Sbjct: 174 ---LPGLITE---DGKANVRKDNELKKKLVFSKRKEERKLRQERRLQASTSKRCACKSES 227 Query: 1327 XXXXXXXXKVPRRENPSNSMTRRLIIAKKESKMSIGVKEAANLERIRTSLEAETGRVISF 1148 V + + RR IIAK E++MS G+K A LE+++ +LE ETG+ +S Sbjct: 228 SIESSIHHVVSTAAKKTKARGRRAIIAKNEAEMSRGIKVVAQLEKVKLTLEKETGKAVSL 287 Query: 1147 SCWAEAAGVDEKVLQQRLHFGWYCRDKLLRSTRSLVFYIARNYRRLGISLEDLLQAGNVG 968 +CWAEAAG+DEKVLQ LHFGWYCRD+LL+S RSLV Y++R YR LG++ EDL+QAGN+G Sbjct: 288 NCWAEAAGIDEKVLQHDLHFGWYCRDELLKSGRSLVLYLSRYYRGLGVAHEDLMQAGNIG 347 Query: 967 VLQGAERFDHTRGYRFSTYIQYWIRKSMSTLVARHSRGIHIPVSLNSVMNQIRKARRSLY 788 +LQGAERFDHTRGY+FSTY+QYWIRK+MS LV+RH RGI +P +L++ +N+++KAR+ L Sbjct: 348 ILQGAERFDHTRGYQFSTYVQYWIRKAMSQLVSRHGRGIKVPTTLSTTINRVQKARKILK 407 Query: 787 NIHGRYPNDDEISRFTGVSLAKIRLACKCPRIVGSIDQRMGDNLSVKFMEFTSDKSIKTP 608 G++P+D E+S+ TG+SL KI+ A C RIVGS+DQ++G +++K++E T D +++ P Sbjct: 408 RSQGKHPDDVEVSKSTGLSLDKIKSADNCLRIVGSLDQKVGHFINMKYLECTPDTALEMP 467 Query: 607 EEMVMMQHMRKDIYELLQGLQPRERQVLILRYGLQDGRSKSLEEIGRVFKCTKEWIRKIE 428 E+ VM QHMR D+++LLQ L P+ER+VLI RYGL +G SL E+G+VF +KEWIRK+E Sbjct: 468 EKTVMKQHMRNDVHKLLQELDPKERRVLIHRYGL-EGHCMSLHEVGKVFDVSKEWIRKME 526 Query: 427 KSALTKVRKEEVQRNLSHYLN 365 K ALTK+R E+ Q NL HYLN Sbjct: 527 KRALTKLRTEQNQTNLKHYLN 547 >ref|XP_004245130.1| PREDICTED: RNA polymerase sigma factor sigC-like [Solanum lycopersicum] Length = 551 Score = 456 bits (1172), Expect = e-125 Identities = 250/560 (44%), Positives = 357/560 (63%), Gaps = 10/560 (1%) Frame = -1 Query: 2020 GFMLDSKWVFPIQSSFFTNSPTKQYSSSVRGKEASYESPRMSILSVIPEESEVLYKDSLK 1841 GF L KW F +Q F +NS + S S +G+E Y+ P S+ I + E + D + Sbjct: 2 GFRLHLKWGFSLQPPFSSNSSSWPSSHSFKGRETLYD-PARSLKPFINGDCEPSHSDPFR 60 Query: 1840 AYXXXXXSLQIIENQSGDKEEIKMKIGRGSHRTLYNPIDDTSVSIQDDTSTSYPMLQVNK 1661 Q+ + + E K + GRGS +Y I + + T L K Sbjct: 61 VQTCLSDP-QLWTSDASVTTETKTRNGRGSPSNVYGDIGSYKIDGEKPT-----YLNTTK 114 Query: 1660 TSHFSSLMENIEKIDEIFVDADVVKLEKDILIQLGKLGAIKLFHVCLSRTLGLKEPTLST 1481 + HFS LM+N++ ++ +F D+++ +LE+DIL+QL KLGA++ FH CLSRT + S Sbjct: 115 SLHFSLLMKNLDLLENMFADSEMSRLERDILVQLEKLGALEFFHTCLSRT----HHSSSF 170 Query: 1480 PIPITELPRDSPINGPIDDKVGN----IIVXXXXXXXXXXXXXRALENXXXXXXXXXXXX 1313 P + ++PR+ DD VGN ++V RA N Sbjct: 171 P-KVLDVPRELIKEVEKDDLVGNAMDKVVVRSRKKQERMSRRKRASRNANDIITVQPHTK 229 Query: 1312 XXXKVPRR------ENPSNSMTRRLIIAKKESKMSIGVKEAANLERIRTSLEAETGRVIS 1151 + ++ + S T+R IAK E++MS GVK A LERIR+ LE ETG+V + Sbjct: 230 NIQEDLQQLKFYSGKRTHASRTKRQKIAKNEAEMSKGVKLVAQLERIRSILEEETGQVAT 289 Query: 1150 FSCWAEAAGVDEKVLQQRLHFGWYCRDKLLRSTRSLVFYIARNYRRLGISLEDLLQAGNV 971 FS WA+AAG+++K LQQ LHFGWYCRD+LL+STRSLV Y+ARNYR LG++ EDL+QAGN+ Sbjct: 290 FSSWAKAAGIEQKELQQHLHFGWYCRDELLKSTRSLVLYLARNYRGLGVAFEDLIQAGNM 349 Query: 970 GVLQGAERFDHTRGYRFSTYIQYWIRKSMSTLVARHSRGIHIPVSLNSVMNQIRKARRSL 791 GVLQGA RFDHTRGY+FSTY+QYWIRKS+S LVA+H+RG+ IP ++ V+NQI KAR++L Sbjct: 350 GVLQGAVRFDHTRGYKFSTYVQYWIRKSLSKLVAQHARGVRIPFTICKVINQIHKARKTL 409 Query: 790 YNIHGRYPNDDEISRFTGVSLAKIRLACKCPRIVGSIDQRMGDNLSVKFMEFTSDKSIKT 611 HG++P DDEI++FTG+S A+I +A KC R+VGSIDQ++GD ++ K +E T DKS+ + Sbjct: 410 SRSHGKFPADDEIAKFTGLSTARIAMASKCLRVVGSIDQKVGDCINAKVLELTPDKSVTS 469 Query: 610 PEEMVMMQHMRKDIYELLQGLQPRERQVLILRYGLQDGRSKSLEEIGRVFKCTKEWIRKI 431 PEE VM Q + ++Y LL+ L P+E+QV+ R+GL+ + KSLEEIGR++ +KEWIR+I Sbjct: 470 PEEFVMRQDIVDNMYALLESLDPKEQQVIYFRFGLETHQRKSLEEIGRLYGVSKEWIRRI 529 Query: 430 EKSALTKVRKEEVQRNLSHY 371 E+ ALTK+R + ++++HY Sbjct: 530 ERRALTKLRSADYFQHITHY 549 >ref|XP_003551127.1| PREDICTED: RNA polymerase sigma factor sigC isoform X1 [Glycine max] Length = 551 Score = 444 bits (1143), Expect = e-122 Identities = 251/563 (44%), Positives = 360/563 (63%), Gaps = 8/563 (1%) Frame = -1 Query: 2029 MGFGFMLDSKWVFPI---QSSFFTNSPTKQYSSSVRGKEASYESPRMSILSVIPEESEVL 1859 +GFGF L+ + + + FTNSP SS +E + R+S S EE E L Sbjct: 3 LGFGFGLNPRLRYCLLLHTPHSFTNSPLCLSPSSAGVRETCFNFTRLSFPSTFYEEGEAL 62 Query: 1858 YKDSLKAYXXXXXSLQIIENQSGDKEEIKMKIGRGSHRTLYNPIDDTSVSIQDDTSTSYP 1679 KD + + +L+ +EN S +EE ++ G+ S +++ ID+T + + ST Sbjct: 63 QKDFGRVFAFSSSALETLENDSLGREETQVNKGKRSLSSVHKMIDNTQMPF-GEVSTVSK 121 Query: 1678 MLQVNKTSHFSSLMENIEKIDEIFVDADVVKLEKDILIQLGKLGAIKLFHVCLSRTLGLK 1499 + + HF LMEN+ ++E FVD++ ++LEK I++QLGKLGA++LF+VCLSR+LG Sbjct: 122 KFESFRAQHFRLLMENLCVLEETFVDSEALRLEKAIILQLGKLGALELFNVCLSRSLG-- 179 Query: 1498 EPTLSTPIPITELPRDSPINGPIDDKVGNIIVXXXXXXXXXXXXXR-----ALENXXXXX 1334 T L S +DD ++V R A+ + Sbjct: 180 ----------TSLV--SNYADKVDDYKDKVVVQSSKKKENKTRRKREFVSTAVSSQSLTL 227 Query: 1333 XXXXXXXXXXKVPRRENPSNSMTRRLIIAKKESKMSIGVKEAANLERIRTSLEAETGRVI 1154 + N+ +R+++AK+E++MS GVK A LE+IRT++E +T RV Sbjct: 228 KANQEDLLGFSASLVKRAPNTKNKRILVAKREAEMSKGVKVLAELEKIRTAIEEDTKRVA 287 Query: 1153 SFSCWAEAAGVDEKVLQQRLHFGWYCRDKLLRSTRSLVFYIARNYRRLGISLEDLLQAGN 974 S S WAEA+GVDEKVLQ+ LH G+YC+D+L+RSTRSLV Y+AR YR +GI+L+DLLQAG Sbjct: 288 SLSTWAEASGVDEKVLQKLLHRGYYCQDELIRSTRSLVLYLARKYRGMGIALDDLLQAGY 347 Query: 973 VGVLQGAERFDHTRGYRFSTYIQYWIRKSMSTLVARHSRGIHIPVSLNSVMNQIRKARRS 794 VGVLQGAERFD TRGY+FSTY+QYWIRKS+ +VAR++RGI IP SLN +NQI+KAR++ Sbjct: 348 VGVLQGAERFDSTRGYKFSTYVQYWIRKSILRVVARYARGIVIPWSLNRAINQIQKARKA 407 Query: 793 LYNIHGRYPNDDEISRFTGVSLAKIRLACKCPRIVGSIDQRMGDNLSVKFMEFTSDKSIK 614 + + H + P+D EI++ TG+SL KI+ A C RIV SIDQ++GD L V++ME D +I+ Sbjct: 408 MKSTHKKCPDDYEIAKMTGLSLDKIKSASNCLRIVASIDQKVGDYLGVEYMELLPDATIE 467 Query: 613 TPEEMVMMQHMRKDIYELLQGLQPRERQVLILRYGLQDGRSKSLEEIGRVFKCTKEWIRK 434 +PE+ VM QHMRKD+++LL+GL RER++L LR+GL D + +SL++IG +FK +KE IRK Sbjct: 468 SPEDAVMKQHMRKDVHDLLKGLNLRERKILTLRFGLNDNQPRSLQDIGTLFKVSKERIRK 527 Query: 433 IEKSALTKVRKEEVQRNLSHYLN 365 IEK ALTK++ E L +YL+ Sbjct: 528 IEKKALTKLKNEATISKLHYYLD 550 >ref|XP_004498453.1| PREDICTED: RNA polymerase sigma factor sigC-like [Cicer arietinum] Length = 545 Score = 438 bits (1127), Expect = e-120 Identities = 245/559 (43%), Positives = 359/559 (64%), Gaps = 6/559 (1%) Frame = -1 Query: 2023 FGFMLDSKWVFPIQSSFFTNSPT-KQYSSSVRGKEASYESPRMSILSVIPEESEVLYKDS 1847 F F L++K P FFT+S SSS G+E + R+S+LS + EE E L KD Sbjct: 5 FRFRLNTKLHSP---HFFTSSTIFLSSSSSAGGREVFFNPTRLSLLSTVYEEGETLQKDF 61 Query: 1846 LKAYXXXXXSLQIIENQSGDKEEIKMKIGRGSHRTLYNPIDDTSVSIQDDTSTSYPMLQV 1667 K + +L++ E E K+ G+ S +++ ID+T + + Sbjct: 62 GKTFAFSSSALEVPEMDLLQGEVTKVNKGKRSLSSVHEIIDNTQLPFGEP---------- 111 Query: 1666 NKTSHFSSLMENIEKIDEIFVDADVVKLEKDILIQLGKLGAIKLFHVCLSRTLGLKEPTL 1487 HF LMEN+ ++E F D++ ++LEKDI+++L KLGA++LF+VCL+R+ G + Sbjct: 112 ----HFGLLMENLGILEETFADSEAMRLEKDIVLKLEKLGALELFNVCLTRSFGTSTESN 167 Query: 1486 STPIPITELPRDSPINGPIDDKVGNIIVXXXXXXXXXXXXXRALE---NXXXXXXXXXXX 1316 T + + E ++ N +D+ G ++V ++ + Sbjct: 168 CTDV-VLEHVKEKKRNFKVDNYTGKVVVQSKRKENRTRRKQASVAITTSFQSLPLEDNNQ 226 Query: 1315 XXXXKVPRR--ENPSNSMTRRLIIAKKESKMSIGVKEAANLERIRTSLEAETGRVISFSC 1142 ++P + SN+ RR +IA++E +MS GVK A LE+++T++E +T + +S S Sbjct: 227 EGPLRLPASLVKRVSNTNNRRAVIAQREVEMSKGVKVLAELEKMKTAIEEDTKQAVSLSS 286 Query: 1141 WAEAAGVDEKVLQQRLHFGWYCRDKLLRSTRSLVFYIARNYRRLGISLEDLLQAGNVGVL 962 WAEA+GVDE VLQ++L+ G+YCRD+L+RSTRSLV Y AR YR +GI+LEDLLQ G +GVL Sbjct: 287 WAEASGVDENVLQRQLYHGYYCRDELIRSTRSLVLYFARKYRGMGIALEDLLQVGYIGVL 346 Query: 961 QGAERFDHTRGYRFSTYIQYWIRKSMSTLVARHSRGIHIPVSLNSVMNQIRKARRSLYNI 782 QGAERFD TRGYRFSTY+QYWIRKSMS +VAR++RGI IP S+N ++QI+KAR+ L + Sbjct: 347 QGAERFDSTRGYRFSTYVQYWIRKSMSRMVARYARGITIPWSMNKAISQIQKARKLLKST 406 Query: 781 HGRYPNDDEISRFTGVSLAKIRLACKCPRIVGSIDQRMGDNLSVKFMEFTSDKSIKTPEE 602 +YP+D EI++ TG+SL +IR A C RIV S++Q+MGD +++M + +D SI++PEE Sbjct: 407 SMKYPDDHEIAKMTGLSLDRIRSASHCMRIVSSMNQKMGDR-GIEYMGYMADMSIESPEE 465 Query: 601 MVMMQHMRKDIYELLQGLQPRERQVLILRYGLQDGRSKSLEEIGRVFKCTKEWIRKIEKS 422 VM QH+RKDI+++LQ L RERQ+LILR+GL D + KSLE IG+++K +KEWIRKIEK Sbjct: 466 TVMKQHIRKDIHDILQSLDSRERQILILRFGLNDHQPKSLEYIGKIYKVSKEWIRKIEKK 525 Query: 421 ALTKVRKEEVQRNLSHYLN 365 ALTK+R E L++YL+ Sbjct: 526 ALTKLRNEANTSKLNYYLD 544 >gb|EYU20393.1| hypothetical protein MIMGU_mgv1a018845mg [Mimulus guttatus] Length = 478 Score = 426 bits (1096), Expect = e-116 Identities = 220/472 (46%), Positives = 318/472 (67%), Gaps = 1/472 (0%) Frame = -1 Query: 1777 IKMKIGRGSHRTLYNPID-DTSVSIQDDTSTSYPMLQVNKTSHFSSLMENIEKIDEIFVD 1601 I++ +G+GS +LY+ +D D + +D + +Q + S LM+N++ ++++F D Sbjct: 12 IQVALGKGSSDSLYSLLDSDIQIPKNEDKLENLTSVQATQASKLRLLMKNLDVLEDMFAD 71 Query: 1600 ADVVKLEKDILIQLGKLGAIKLFHVCLSRTLGLKEPTLSTPIPITELPRDSPINGPIDDK 1421 ++ V+LE DIL QL +LGA++LFH CLSRT+ T +++ P + + Sbjct: 72 SNAVRLEGDILEQLERLGALRLFHSCLSRTI-----KSYTSFDLSDGPTEIVEECKVFVH 126 Query: 1420 VGNIIVXXXXXXXXXXXXXRALENXXXXXXXXXXXXXXXKVPRRENPSNSMTRRLIIAKK 1241 G + ++ + R S +R A+ Sbjct: 127 SGKKELRKLRRKRTSDNESPTIQESPSKTISKDLQQLKFAIAGRT--PRSRNKRQKTARN 184 Query: 1240 ESKMSIGVKEAANLERIRTSLEAETGRVISFSCWAEAAGVDEKVLQQRLHFGWYCRDKLL 1061 E+ MS GVK A LE+IRT LE ETG++ S S WAEAAG+ +K LQQ LH+GW+CRD+LL Sbjct: 185 EADMSSGVKRVAELEKIRTKLEQETGQIASLSNWAEAAGIKKKELQQHLHYGWHCRDELL 244 Query: 1060 RSTRSLVFYIARNYRRLGISLEDLLQAGNVGVLQGAERFDHTRGYRFSTYIQYWIRKSMS 881 RST SLV +IARNY LG++ EDL+QAGN+GVLQGAERFD +RGY+FSTY+QYWIRKSMS Sbjct: 245 RSTHSLVLFIARNYSGLGVAFEDLIQAGNIGVLQGAERFDQSRGYKFSTYVQYWIRKSMS 304 Query: 880 TLVARHSRGIHIPVSLNSVMNQIRKARRSLYNIHGRYPNDDEISRFTGVSLAKIRLACKC 701 TLVA+H+RG+ IP +L+ V+NQ+ KAR++L +G+YP+D EI++FTG+S+AK+ A KC Sbjct: 305 TLVAKHARGVRIPCTLSKVINQVHKARKALTTSNGKYPDDYEIAKFTGLSVAKVMSASKC 364 Query: 700 PRIVGSIDQRMGDNLSVKFMEFTSDKSIKTPEEMVMMQHMRKDIYELLQGLQPRERQVLI 521 R+VGSIDQ++G+ ++ K+ME SD S+ +PEE V+ QHM D+ LL GL+PRE+QV+I Sbjct: 365 LRVVGSIDQKIGEYMTTKYMEILSDTSMPSPEEAVIRQHMLNDVSTLLNGLEPREKQVII 424 Query: 520 LRYGLQDGRSKSLEEIGRVFKCTKEWIRKIEKSALTKVRKEEVQRNLSHYLN 365 LR+GL + + KSLEEIGR+F+ +KEWIRKIE+SAL K+R E+ + L+HY++ Sbjct: 425 LRFGLGNCQCKSLEEIGRLFRVSKEWIRKIERSALIKLRNEDSLKILNHYVH 476 >ref|XP_002877947.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297323785|gb|EFH54206.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 568 Score = 426 bits (1096), Expect = e-116 Identities = 242/527 (45%), Positives = 335/527 (63%), Gaps = 3/527 (0%) Frame = -1 Query: 1936 VRGKEASYESPRMSILSVIPEESEVLYKDSLKAYXXXXXSLQIIENQSGDKEEIKMKIGR 1757 VR +S+ + R S LS + EES + KD LKA EN + ++ K IG Sbjct: 73 VRIPVSSFVATRWSFLSSVKEESRIYQKDPLKACASSAPYTA--ENVFLELKDPKENIGV 130 Query: 1756 GSHRTLYNPIDDTSVSIQDDTSTSYPMLQVNKTSHFSSLMENIEKIDEIFVDADVVKLEK 1577 GS + + +S MLQ N L +N+ ++E FV D ++E+ Sbjct: 131 GS---------------AEKSCSSRSMLQYNL------LAKNLLALEETFVALDSARMER 169 Query: 1576 DILIQLGKLGAIKLFHVCLSRTLGLKEPTLSTPIPITELPRDSPINGPIDDKVGNIIVXX 1397 DI++Q+GKLGA LF CLSR+ G S TEL +P + +V + Sbjct: 170 DIMLQMGKLGAADLFKTCLSRSRG--SSVASCLSDTTELVGTTP-----NQQV--FVSSR 220 Query: 1396 XXXXXXXXXXXRALENXXXXXXXXXXXXXXXK--VPRRENPSNSMTRRLIIAKKESKMSI 1223 EN VPR P +R I+K E++MS Sbjct: 221 RKLKKKARRSTVTAENGDQGSLPMGLRTTWNNIDVPRVRRPPKYRKKRERISKNEAEMST 280 Query: 1222 GVKEAANLERIRTSLEAETGRVISFSCWAEAAGVDEKVLQQRLHFGWYCRDKLLRSTRSL 1043 GVK A++ERIRT LE E+G+V S SCWAEAAG++EK+L + LH+GWYCRD+LL+STRSL Sbjct: 281 GVKIVADMERIRTQLEEESGKVASLSCWAEAAGMNEKLLMRNLHYGWYCRDELLKSTRSL 340 Query: 1042 VFYIARNYRRLGISLEDLLQAGNVGVLQGAERFDHTRGYRFSTYIQYWIRKSMSTLVARH 863 V ++ARNYR LGI+ EDL+QAG VGVLQGAERFDHTRGY+FSTY+QYWIRKSMS +V+RH Sbjct: 341 VLFLARNYRGLGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRKSMSMMVSRH 400 Query: 862 SRGIHIPVSLNSVMNQIRKARRSLYNIHG-RYPNDDEISRFTGVSLAKIRLACKCPRIVG 686 +RG+HIP S+ +NQI+KAR++L HG +YP D++IS+ T +S+ KIR A +C ++VG Sbjct: 401 ARGVHIPSSIIRTINQIQKARKTLKTSHGIKYPADEDISKLTSLSVKKIRAANQCLKVVG 460 Query: 685 SIDQRMGDNLSVKFMEFTSDKSIKTPEEMVMMQHMRKDIYELLQGLQPRERQVLILRYGL 506 SI++++GD S KF+EFT D ++++PEE VM Q R+DI++LL+GL+PRE+QV++LRYGL Sbjct: 461 SIEKKVGDCFSTKFLEFTPDTTMESPEEAVMRQSARRDIHDLLEGLEPREKQVMVLRYGL 520 Query: 505 QDGRSKSLEEIGRVFKCTKEWIRKIEKSALTKVRKEEVQRNLSHYLN 365 Q+ R KSLEEIG++ + +KEWIRKIE+ A+ K+R + +L +YLN Sbjct: 521 QNYRPKSLEEIGKLLRVSKEWIRKIERRAMAKLRDQPNAEDLRYYLN 567 >dbj|BAA22215.1| plastid RNA polymerase sigma-subunit [Arabidopsis thaliana] Length = 571 Score = 424 bits (1089), Expect = e-115 Identities = 240/527 (45%), Positives = 333/527 (63%), Gaps = 3/527 (0%) Frame = -1 Query: 1936 VRGKEASYESPRMSILSVIPEESEVLYKDSLKAYXXXXXSLQIIENQSGDKEEIKMKIGR 1757 VR S + R S LS + EES + DSLKA S +N Sbjct: 73 VRIPMTSVVATRWSFLSSVKEESRIYQNDSLKACGCASVSPYTAQNNV------------ 120 Query: 1756 GSHRTLYNPIDDTSVSIQDDTSTSYPMLQVNKTSHFSSLMENIEKIDEIFVDADVVKLEK 1577 + L +P ++ V + + +S MLQ N L +N+ ++E FV D V++E+ Sbjct: 121 --YVELKDPKENIGVGSAERSYSSRSMLQYNL------LAKNLLALEETFVALDSVRMER 172 Query: 1576 DILIQLGKLGAIKLFHVCLSRTLGLKEPTLSTPIPITELPRDSPINGPIDDKVGNIIVXX 1397 DI++Q+GKLGA +LF CLSR G S TEL +P + +V + Sbjct: 173 DIMLQMGKLGAAELFKTCLSRYRG--SSITSCLSDTTELVDTTP-----NQQV--FVSSR 223 Query: 1396 XXXXXXXXXXXRALENXXXXXXXXXXXXXXXK--VPRRENPSNSMTRRLIIAKKESKMSI 1223 EN VPR P +R I++ E++MS Sbjct: 224 RKVKKKARRSSVTAENGDQSSLPIGLRTTWNNIDVPRVRRPPKYRKKRERISRNETEMST 283 Query: 1222 GVKEAANLERIRTSLEAETGRVISFSCWAEAAGVDEKVLQQRLHFGWYCRDKLLRSTRSL 1043 GVK A++ERIRT LE E+G+V S SCWA AAG++EK+L + LH+GWYCRD+L++STRSL Sbjct: 284 GVKIVADMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRDELVKSTRSL 343 Query: 1042 VFYIARNYRRLGISLEDLLQAGNVGVLQGAERFDHTRGYRFSTYIQYWIRKSMSTLVARH 863 V ++ARNYR +GI+ EDL+QAG VGVLQGAERFDHTRGY+FSTY+QYWIRKSMST+V+RH Sbjct: 344 VLFLARNYRGMGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRKSMSTMVSRH 403 Query: 862 SRGIHIPVSLNSVMNQIRKARRSLYNIHG-RYPNDDEISRFTGVSLAKIRLACKCPRIVG 686 +RG+HIP S+ +N I+KAR++L HG +Y D+EI++ TG S+ KIR A +C ++VG Sbjct: 404 ARGVHIPSSIIRTINHIQKARKTLKTSHGIKYAADEEIAKLTGHSVKKIRAANQCLKVVG 463 Query: 685 SIDQRMGDNLSVKFMEFTSDKSIKTPEEMVMMQHMRKDIYELLQGLQPRERQVLILRYGL 506 SID+++GD + KF+EFT D ++++PEE VM Q R+DI++LL+GL+PRE+QV++LRYGL Sbjct: 464 SIDKKVGDCFTTKFLEFTPDTTMESPEEAVMRQSARRDIHDLLEGLEPREKQVMVLRYGL 523 Query: 505 QDGRSKSLEEIGRVFKCTKEWIRKIEKSALTKVRKEEVQRNLSHYLN 365 QD R KSLEEIG++FK +KEWIRKIE+ A+ K+R + +L +YLN Sbjct: 524 QDYRPKSLEEIGKLFKVSKEWIRKIERRAMAKLRDQPNAEDLRYYLN 570 >ref|NP_190960.1| RNA polymerase sigma-subunit C [Arabidopsis thaliana] gi|75098239|sp|O24621.1|SIGC_ARATH RecName: Full=RNA polymerase sigma factor sigC; Short=Sigma factor C; Short=Sigma-C; AltName: Full=RNA polymerase sigma factor sig3; Short=Atsig3; Short=Sigma factor 3; Flags: Precursor gi|2353175|gb|AAB69386.1| sigma factor 3 [Arabidopsis thaliana] gi|2463554|dbj|BAA22530.1| SigC [Arabidopsis thaliana] gi|5478585|dbj|BAA82450.1| sigma factor SigC [Arabidopsis thaliana] gi|7630012|emb|CAB88354.1| sigma factor SigC [Arabidopsis thaliana] gi|133778870|gb|ABO38775.1| At3g53920 [Arabidopsis thaliana] gi|332645638|gb|AEE79159.1| RNApolymerase sigma-subunit C [Arabidopsis thaliana] Length = 571 Score = 422 bits (1085), Expect = e-115 Identities = 240/527 (45%), Positives = 332/527 (62%), Gaps = 3/527 (0%) Frame = -1 Query: 1936 VRGKEASYESPRMSILSVIPEESEVLYKDSLKAYXXXXXSLQIIENQSGDKEEIKMKIGR 1757 VR S + R S LS + EES + DSLKA S +N Sbjct: 73 VRIPMTSVVATRWSFLSSVKEESRIYQNDSLKACGCASVSPYTAQNNV------------ 120 Query: 1756 GSHRTLYNPIDDTSVSIQDDTSTSYPMLQVNKTSHFSSLMENIEKIDEIFVDADVVKLEK 1577 + L +P ++ V + + +S MLQ N L +N+ ++E FV D V++E+ Sbjct: 121 --YVELKDPKENIGVGSAERSYSSRSMLQYNL------LAKNLLALEETFVALDSVRMER 172 Query: 1576 DILIQLGKLGAIKLFHVCLSRTLGLKEPTLSTPIPITELPRDSPINGPIDDKVGNIIVXX 1397 DI++Q+GKLGA +LF CLSR G S TEL +P + +V + Sbjct: 173 DIMLQMGKLGAAELFKTCLSRYRG--SSITSCLSDTTELVDTTP-----NQQV--FVSSR 223 Query: 1396 XXXXXXXXXXXRALENXXXXXXXXXXXXXXXK--VPRRENPSNSMTRRLIIAKKESKMSI 1223 EN VPR P +R I++ E++MS Sbjct: 224 RKVKKKARRSSVTAENGDQSSLPIGLRTTWNNIDVPRVRRPPKYRKKRERISRNETEMST 283 Query: 1222 GVKEAANLERIRTSLEAETGRVISFSCWAEAAGVDEKVLQQRLHFGWYCRDKLLRSTRSL 1043 GVK A++ERIRT LE E+G+V S SCWA AAG++EK+L + LH+GWYCRD+L++STRSL Sbjct: 284 GVKIVADMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRDELVKSTRSL 343 Query: 1042 VFYIARNYRRLGISLEDLLQAGNVGVLQGAERFDHTRGYRFSTYIQYWIRKSMSTLVARH 863 V ++ARNYR LGI+ EDL+QAG VGVLQGAERFDHTRGY+FSTY+QYWIRKSMST+V+RH Sbjct: 344 VLFLARNYRGLGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRKSMSTMVSRH 403 Query: 862 SRGIHIPVSLNSVMNQIRKARRSLYNIHG-RYPNDDEISRFTGVSLAKIRLACKCPRIVG 686 +RG+HIP S+ +N I+KAR++L HG +Y D+EI++ TG S+ KIR A +C ++VG Sbjct: 404 ARGVHIPSSIIRTINHIQKARKTLKTSHGIKYAADEEIAKLTGHSVKKIRAANQCLKVVG 463 Query: 685 SIDQRMGDNLSVKFMEFTSDKSIKTPEEMVMMQHMRKDIYELLQGLQPRERQVLILRYGL 506 SID+++GD + KF+EFT D ++++PEE VM Q R+DI++LL+GL+PRE+QV++LRYGL Sbjct: 464 SIDKKVGDCFTTKFLEFTPDTTMESPEEAVMRQSARRDIHDLLEGLEPREKQVMVLRYGL 523 Query: 505 QDGRSKSLEEIGRVFKCTKEWIRKIEKSALTKVRKEEVQRNLSHYLN 365 QD R KSLEEIG++ K +KEWIRKIE+ A+ K+R + +L +YLN Sbjct: 524 QDYRPKSLEEIGKLLKVSKEWIRKIERRAMAKLRDQPNAEDLRYYLN 570