BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia23_contig00024919
         (1475 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EXB95293.1| RNA polymerase sigma factor rpoD [Morus notabilis]     181   2e-88
ref|XP_006438958.1| hypothetical protein CICLE_v10033747mg [Citr...   184   4e-85
ref|XP_006482924.1| PREDICTED: RNA polymerase sigma factor sigD,...   183   1e-84
ref|XP_006851106.1| hypothetical protein AMTR_s00025p00248060 [A...   174   3e-83
ref|NP_196877.1| sigma factor 4 [Arabidopsis thaliana] gi|752165...   164   2e-77
ref|XP_006399871.1| hypothetical protein EUTSA_v10013654mg [Eutr...   165   2e-76
ref|XP_006287834.1| hypothetical protein CARUB_v10001054mg [Caps...   162   1e-75
ref|XP_006345495.1| PREDICTED: RNA polymerase sigma factor sigD,...   157   3e-75
ref|XP_006379084.1| hypothetical protein POPTR_0009s06210g [Popu...   159   2e-74
ref|XP_003599439.1| RNA polymerase sigma factor [Medicago trunca...   173   2e-73
ref|XP_004231123.1| PREDICTED: RNA polymerase sigma factor sigD,...   159   1e-72
ref|XP_006379083.1| hypothetical protein POPTR_0009s06210g [Popu...   153   1e-72
ref|XP_007148893.1| hypothetical protein PHAVU_005G023100g [Phas...   161   1e-72
ref|XP_007148895.1| hypothetical protein PHAVU_005G023100g [Phas...   161   5e-72
ref|XP_003599441.1| RNA polymerase sigma factor [Medicago trunca...   173   1e-71
ref|XP_004499937.1| PREDICTED: RNA polymerase sigma factor sigD,...   163   6e-71
ref|XP_004149725.1| PREDICTED: RNA polymerase sigma factor sigD,...   145   2e-68
ref|XP_004169825.1| PREDICTED: RNA polymerase sigma factor sigD,...   145   2e-68
ref|XP_002517769.1| RNA polymerase sigma factor rpoD, putative [...   149   1e-65
ref|XP_002873625.1| hypothetical protein ARALYDRAFT_909325 [Arab...   154   3e-62

>gb|EXB95293.1| RNA polymerase sigma factor rpoD [Morus notabilis]
          Length = 422

 Score =  181 bits (458), Expect(2) = 2e-88
 Identities = 94/148 (63%), Positives = 119/148 (80%), Gaps = 2/148 (1%)
 Frame = -2

Query: 541 GSMCEMLAKISEANTLLSRRLRRQPTYHEIADTIQVGVSIVRLVCERSRAPISIDRTITH 362
           G+MC ++AK++EAN +L++RLRR PTY EIA  + V VS VRLV ER R PIS+DR IT 
Sbjct: 261 GNMCGIVAKVTEANNVLNKRLRRFPTYDEIAQVVGVHVSTVRLVSERIRPPISLDRAITE 320

Query: 361 EGCSILQ-IIPGPDELRPETIVNKQLMKQQVQTLLKT-LNEREELILRLHYGLNGETPRS 188
            GC  LQ IIPGP+E+ PE +V KQLMKQ+++ LLKT L++RE  +LRLH+GL+G+ P S
Sbjct: 321 RGCMTLQEIIPGPEEISPEKMVRKQLMKQEIEKLLKTVLSDREANVLRLHFGLSGDIPLS 380

Query: 187 CEEIGRLLNLSRERIRQIHCIALTKLRQ 104
           CEEIGRLL LSRERIRQI+ IAL+KL+Q
Sbjct: 381 CEEIGRLLKLSRERIRQINGIALSKLQQ 408



 Score =  174 bits (440), Expect(2) = 2e-88
 Identities = 112/278 (40%), Positives = 147/278 (52%)
 Frame = -3

Query: 1377 SMATVSNHSPTLPTISLYSVPTKLSIRTLPTPQTSSLSPQKFGLSVVSEDLXXXXXXXXX 1198
            SM +  +H P LPT+SL          T+P P     SP K G+++VS D          
Sbjct: 6    SMCSSPSHPPNLPTLSL---------PTIPAP-----SPSKVGVNLVSNDALIVAAAAEA 51

Query: 1197 XXXXXXXXXXXXXXXXXXXXDGESRLESEDDNMVGIXXXXXXXXXKALEMSNLDSSSCDG 1018
                                 GE    ++   +            K LE+ + D  S DG
Sbjct: 52   VTLARAAAKAARDALAEAASVGEVWSGNKSSELT--MRRKKRKRGKTLELLDTDEKS-DG 108

Query: 1017 LEQNWSIRSSRSVYLTSREDAQFSLYLKEGTRLXXXXXXXXXXXXXXXXXXXSQWAEAAG 838
             +  +SI   +  YL+ RE+A+  L LKEG +L                    + A+A G
Sbjct: 109  EDMRFSIGPMKLGYLSPREEAECCLILKEGAKLEATRLRMTNSEDHEPTSK--ELAKAMG 166

Query: 837  MNKRSLERTLCRARESRERITLSYRRLVVWIATAYQGKGLSLQDLIQEGSIGLLRGVERF 658
            M  RS+++ LC  RES+ERI+ SYRRLVV +A  YQGKGLS  DLIQEGS+GLLRG ++F
Sbjct: 167  MEMRSIDKMLCDKRESQERISRSYRRLVVSVAAGYQGKGLSFPDLIQEGSVGLLRGAQKF 226

Query: 657  DPKKGYKLSTYVYWWIKQAIIRAIANKSRMIRLPLVMC 544
            DP++G KLSTYVYWWI+QAIIRAI NKSR++RLP  MC
Sbjct: 227  DPQRGNKLSTYVYWWIRQAIIRAIENKSRVVRLPGNMC 264


>ref|XP_006438958.1| hypothetical protein CICLE_v10033747mg [Citrus clementina]
           gi|557541154|gb|ESR52198.1| hypothetical protein
           CICLE_v10033747mg [Citrus clementina]
          Length = 436

 Score =  184 bits (468), Expect(2) = 4e-85
 Identities = 99/159 (62%), Positives = 124/159 (77%), Gaps = 1/159 (0%)
 Frame = -2

Query: 541 GSMCEMLAKISEANTLLSRRLRRQPTYHEIADTIQVGVSIVRLVCERSRAPISIDRTITH 362
           GSM  M+AKI+EAN +LSRRLRR PT +EIA+ + + VS VRL  ER+R PIS+D  IT 
Sbjct: 278 GSMSGMVAKIAEANNVLSRRLRRMPTDNEIAEMLNIHVSTVRLAIERTRHPISLDGAITD 337

Query: 361 EGCSILQ-IIPGPDELRPETIVNKQLMKQQVQTLLKTLNEREELILRLHYGLNGETPRSC 185
            GC  LQ IIPGPDE  PE +V KQLMKQ+++ LL+TL+ERE  ILRLH+GL+G+TP SC
Sbjct: 338 TGCMTLQDIIPGPDETMPEKMVQKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSC 397

Query: 184 EEIGRLLNLSRERIRQIHCIALTKLRQILL*VN*RIHMV 68
           +EIGRLL LSRER+RQI  IALTKL+Q  +  N +++MV
Sbjct: 398 KEIGRLLTLSRERVRQIRGIALTKLQQTNIRNNLKVYMV 436



 Score =  159 bits (402), Expect(2) = 4e-85
 Identities = 86/154 (55%), Positives = 105/154 (68%)
 Frame = -3

Query: 1017 LEQNWSIRSSRSVYLTSREDAQFSLYLKEGTRLXXXXXXXXXXXXXXXXXXXSQWAEAAG 838
            L+ N     + ++YLT  E+A+    LKEG +L                    Q A+A G
Sbjct: 126  LDYNLVKCKTSNLYLTPSEEAEICYSLKEGAKLEEARKTVAQAEEHESISK--QLAKATG 183

Query: 837  MNKRSLERTLCRARESRERITLSYRRLVVWIATAYQGKGLSLQDLIQEGSIGLLRGVERF 658
            M +  +++ LC+ RES+ERI  SYR LVV IAT YQGKGLSL+DLIQEGSIGLLRG +RF
Sbjct: 184  MKQSKVDKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRF 243

Query: 657  DPKKGYKLSTYVYWWIKQAIIRAIANKSRMIRLP 556
            +P++GYKLSTYVYWWIKQAIIR IANKSR IRLP
Sbjct: 244  NPERGYKLSTYVYWWIKQAIIRTIANKSRTIRLP 277


>ref|XP_006482924.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
           [Citrus sinensis]
          Length = 436

 Score =  183 bits (464), Expect(2) = 1e-84
 Identities = 99/159 (62%), Positives = 123/159 (77%), Gaps = 1/159 (0%)
 Frame = -2

Query: 541 GSMCEMLAKISEANTLLSRRLRRQPTYHEIADTIQVGVSIVRLVCERSRAPISIDRTITH 362
           GSM  M+AKI+EAN +LSRRLRR PT  EIA+ + + VS VRL  ER+R PIS+D  IT 
Sbjct: 278 GSMSGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSNVRLAIERTRHPISLDGAITD 337

Query: 361 EGCSILQ-IIPGPDELRPETIVNKQLMKQQVQTLLKTLNEREELILRLHYGLNGETPRSC 185
            GC  LQ IIPGPDE  PE +V KQLMKQ+++ LL+TL+ERE  ILRLH+GL+G+TP SC
Sbjct: 338 TGCMTLQDIIPGPDETMPEKMVQKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSC 397

Query: 184 EEIGRLLNLSRERIRQIHCIALTKLRQILL*VN*RIHMV 68
           +EIGRLL LSRER+RQI  IALTKL+Q  +  N +++MV
Sbjct: 398 KEIGRLLTLSRERVRQIRGIALTKLQQTNIRNNLKVYMV 436



 Score =  159 bits (402), Expect(2) = 1e-84
 Identities = 86/154 (55%), Positives = 105/154 (68%)
 Frame = -3

Query: 1017 LEQNWSIRSSRSVYLTSREDAQFSLYLKEGTRLXXXXXXXXXXXXXXXXXXXSQWAEAAG 838
            L+ N     + ++YLT  E+A+    LKEG +L                    Q A+A G
Sbjct: 126  LDYNLVKCKTSNLYLTPSEEAEICYSLKEGAKLEEARKTVAQAEEHESISK--QLAKATG 183

Query: 837  MNKRSLERTLCRARESRERITLSYRRLVVWIATAYQGKGLSLQDLIQEGSIGLLRGVERF 658
            M +  +++ LC+ RES+ERI  SYR LVV IAT YQGKGLSL+DLIQEGSIGLLRG +RF
Sbjct: 184  MKQSKVDKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRF 243

Query: 657  DPKKGYKLSTYVYWWIKQAIIRAIANKSRMIRLP 556
            +P++GYKLSTYVYWWIKQAIIR IANKSR IRLP
Sbjct: 244  NPERGYKLSTYVYWWIKQAIIRTIANKSRTIRLP 277


>ref|XP_006851106.1| hypothetical protein AMTR_s00025p00248060 [Amborella trichopoda]
           gi|548854777|gb|ERN12687.1| hypothetical protein
           AMTR_s00025p00248060 [Amborella trichopoda]
          Length = 449

 Score =  174 bits (441), Expect(2) = 3e-83
 Identities = 94/150 (62%), Positives = 107/150 (71%)
 Frame = -3

Query: 993 SSRSVYLTSREDAQFSLYLKEGTRLXXXXXXXXXXXXXXXXXXXSQWAEAAGMNKRSLER 814
           SS   YLT RE+A+FSL L+EG RL                    QWAEA GM + S+ER
Sbjct: 145 SSSEDYLTRREEAEFSLCLREGARLEGIRRKLREKRGREPSRG--QWAEAVGMRESSMER 202

Query: 813 TLCRARESRERITLSYRRLVVWIATAYQGKGLSLQDLIQEGSIGLLRGVERFDPKKGYKL 634
            L  ARE R RIT SYRRLVV IAT+Y GKG+SL DLIQEGS+GLLRG ERFD ++GYKL
Sbjct: 203 RLGIARECRNRITNSYRRLVVSIATSYPGKGMSLSDLIQEGSLGLLRGAERFDHRRGYKL 262

Query: 633 STYVYWWIKQAIIRAIANKSRMIRLPLVMC 544
           STYVYWWIKQAII+AIA KSR++RLP  MC
Sbjct: 263 STYVYWWIKQAIIKAIATKSRIVRLPGSMC 292



 Score =  163 bits (413), Expect(2) = 3e-83
 Identities = 84/147 (57%), Positives = 111/147 (75%), Gaps = 1/147 (0%)
 Frame = -2

Query: 541 GSMCEMLAKISEANTLLSRRLRRQPTYHEIADTIQVGVSIVRLVCERSRAPISIDRTITH 362
           GSMC  +AK+SEA+ +L  RL R+P+  EIA+   + +S VRLV ER R P+SID+ +  
Sbjct: 289 GSMCATVAKVSEASGVLMSRLGRRPSQEEIAEKTGIALSRVRLVTERCRLPLSIDQPLGR 348

Query: 361 EG-CSILQIIPGPDELRPETIVNKQLMKQQVQTLLKTLNEREELILRLHYGLNGETPRSC 185
            G  S+  II GP+E RPE +V ++ MK  ++ LL+TL+EREE I+RL +G+NGETP+SC
Sbjct: 349 HGDISLKDIIAGPEETRPEEMVKREWMKGTMEMLLQTLSEREECIVRLQFGMNGETPKSC 408

Query: 184 EEIGRLLNLSRERIRQIHCIALTKLRQ 104
           +EIGRLLNLSRER+RQIH IAL KLRQ
Sbjct: 409 DEIGRLLNLSRERVRQIHYIALAKLRQ 435


>ref|NP_196877.1| sigma factor 4 [Arabidopsis thaliana]
           gi|75216509|sp|Q9ZSL6.1|SIGD_ARATH RecName: Full=RNA
           polymerase sigma factor sigD, chloroplastic; Short=Sigma
           factor D; Short=Sigma-D; AltName: Full=RNA polymerase
           sigma factor sig4; Short=Atsig4; Short=Sigma factor 4;
           Flags: Precursor gi|3983260|gb|AAC97954.1| sigma-like
           factor [Arabidopsis thaliana] gi|4972296|dbj|BAA78110.1|
           RNA polymerase sigma subunit SigD [Arabidopsis thaliana]
           gi|9758039|dbj|BAB08700.1| sigma-like factor
           [Arabidopsis thaliana] gi|332004550|gb|AED91933.1| sigma
           factor 4 [Arabidopsis thaliana]
          Length = 419

 Score =  164 bits (415), Expect(2) = 2e-77
 Identities = 86/148 (58%), Positives = 102/148 (68%)
 Frame = -3

Query: 999 IRSSRSVYLTSREDAQFSLYLKEGTRLXXXXXXXXXXXXXXXXXXXSQWAEAAGMNKRSL 820
           + +SRS +L+  E+ Q  LYLKEG +L                      A   G  KRS 
Sbjct: 115 VGASRSGFLSRLEEVQLCLYLKEGAKLENLGTSVEENEMVSVLL-----ASGRGKKKRSA 169

Query: 819 ERTLCRARESRERITLSYRRLVVWIATAYQGKGLSLQDLIQEGSIGLLRGVERFDPKKGY 640
              LCR +E+RE+IT  YRRLVV IAT YQGKGL+LQDLIQEGSIGLLRG ERFDP +GY
Sbjct: 170 NEILCRRKEAREKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPDRGY 229

Query: 639 KLSTYVYWWIKQAIIRAIANKSRMIRLP 556
           KLSTYVYWWIKQAI+RAIA+KSR+++LP
Sbjct: 230 KLSTYVYWWIKQAILRAIAHKSRLVKLP 257



 Score =  154 bits (388), Expect(2) = 2e-77
 Identities = 79/148 (53%), Positives = 109/148 (73%), Gaps = 1/148 (0%)
 Frame = -2

Query: 541 GSMCEMLAKISEANTLLSRRLRRQPTYHEIADTIQVGVSIVRLVCERSRAPISIDRTITH 362
           GSM E+ AK++EA+ +L+R+LRRQP+  EIA+ + + VS VRL  ERSR+P+S+DR  + 
Sbjct: 258 GSMWELTAKVAEASNVLTRKLRRQPSCEEIAEHLNLNVSAVRLAVERSRSPVSLDRVASQ 317

Query: 361 EGCSILQ-IIPGPDELRPETIVNKQLMKQQVQTLLKTLNEREELILRLHYGLNGETPRSC 185
            G   LQ I+ GPDE RPE +V ++ MK +++ LL +L  RE  +L L++GLNGETP S 
Sbjct: 318 NGRMTLQEIVRGPDETRPEEMVKREHMKHEIEQLLGSLTARESRVLGLYFGLNGETPMSF 377

Query: 184 EEIGRLLNLSRERIRQIHCIALTKLRQI 101
           EEIG+ L LSRER+RQI+ IAL KLR +
Sbjct: 378 EEIGKSLKLSRERVRQINGIALKKLRNV 405


>ref|XP_006399871.1| hypothetical protein EUTSA_v10013654mg [Eutrema salsugineum]
           gi|557100961|gb|ESQ41324.1| hypothetical protein
           EUTSA_v10013654mg [Eutrema salsugineum]
          Length = 421

 Score =  165 bits (418), Expect(2) = 2e-76
 Identities = 86/148 (58%), Positives = 103/148 (69%)
 Frame = -3

Query: 999 IRSSRSVYLTSREDAQFSLYLKEGTRLXXXXXXXXXXXXXXXXXXXSQWAEAAGMNKRSL 820
           + +SRS +L+  E+ Q  LYLKEG +L                      +   G  KRS 
Sbjct: 117 VAASRSGFLSRLEEVQLCLYLKEGAKLENVGTSVEENEIVSVLL-----SSGKGKKKRSA 171

Query: 819 ERTLCRARESRERITLSYRRLVVWIATAYQGKGLSLQDLIQEGSIGLLRGVERFDPKKGY 640
              LCR RE+RE+IT  YRRLVV IAT YQGKGL+LQDLIQEGSIGLLRG ERFDP++GY
Sbjct: 172 NEILCRRREAREKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPERGY 231

Query: 639 KLSTYVYWWIKQAIIRAIANKSRMIRLP 556
           KLSTYVYWWIKQAI+RAIA+KSR+++LP
Sbjct: 232 KLSTYVYWWIKQAILRAIAHKSRLVKLP 259



 Score =  149 bits (376), Expect(2) = 2e-76
 Identities = 77/148 (52%), Positives = 108/148 (72%), Gaps = 1/148 (0%)
 Frame = -2

Query: 541 GSMCEMLAKISEANTLLSRRLRRQPTYHEIADTIQVGVSIVRLVCERSRAPISIDRTITH 362
           GSM E+ AK++EA+ +L+R+L+R P+  EIA+ + + VS VRL  ER R+P+S+DR  + 
Sbjct: 260 GSMWELTAKVAEASNVLTRKLKRIPSCEEIAEHLNIHVSAVRLAVERGRSPVSLDRVASL 319

Query: 361 EGCSILQ-IIPGPDELRPETIVNKQLMKQQVQTLLKTLNEREELILRLHYGLNGETPRSC 185
            G   LQ I+ GPDE RPE +V ++ MK +++ LL +L  RE  +L L++GLNGETP S 
Sbjct: 320 NGRMTLQEIVRGPDETRPEEMVKREHMKHEIEQLLGSLTARESRVLGLYFGLNGETPMSF 379

Query: 184 EEIGRLLNLSRERIRQIHCIALTKLRQI 101
           EEIG+ L LSRER+RQI+ IALTKLR +
Sbjct: 380 EEIGKSLKLSRERVRQINGIALTKLRNV 407


>ref|XP_006287834.1| hypothetical protein CARUB_v10001054mg [Capsella rubella]
           gi|482556540|gb|EOA20732.1| hypothetical protein
           CARUB_v10001054mg [Capsella rubella]
          Length = 419

 Score =  162 bits (411), Expect(2) = 1e-75
 Identities = 85/146 (58%), Positives = 101/146 (69%)
 Frame = -3

Query: 993 SSRSVYLTSREDAQFSLYLKEGTRLXXXXXXXXXXXXXXXXXXXSQWAEAAGMNKRSLER 814
           +SRS +L+  E+ Q  LYLKEG +L                      +   G  KRS   
Sbjct: 117 ASRSGFLSRLEEVQLCLYLKEGAKLENLGTSAQENEMVSVLL-----SSGKGKKKRSANE 171

Query: 813 TLCRARESRERITLSYRRLVVWIATAYQGKGLSLQDLIQEGSIGLLRGVERFDPKKGYKL 634
            LCR +E+RE+IT  YRRLVV IAT YQGKGL+LQDLIQEGSIGLLRG ERFDP +GYKL
Sbjct: 172 ILCRRKEAREKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPDRGYKL 231

Query: 633 STYVYWWIKQAIIRAIANKSRMIRLP 556
           STYVYWWIKQAI+RAIA+KSR+++LP
Sbjct: 232 STYVYWWIKQAILRAIAHKSRLVKLP 257



 Score =  149 bits (376), Expect(2) = 1e-75
 Identities = 76/148 (51%), Positives = 109/148 (73%), Gaps = 1/148 (0%)
 Frame = -2

Query: 541 GSMCEMLAKISEANTLLSRRLRRQPTYHEIADTIQVGVSIVRLVCERSRAPISIDRTITH 362
           GSM E+ A+++EA+ +L+R+LRRQP+  EIA+ + + VS VRL  E+SR+P+S+DR  + 
Sbjct: 258 GSMWELTARVAEASNVLTRKLRRQPSCEEIAEHLNLHVSAVRLAVEKSRSPVSLDRVASQ 317

Query: 361 EGCSILQ-IIPGPDELRPETIVNKQLMKQQVQTLLKTLNEREELILRLHYGLNGETPRSC 185
            G   LQ I+ GPDE RPE +V ++ +K +++ LL +L  RE  +L L++GLNGETP S 
Sbjct: 318 NGRMTLQEIVRGPDETRPEEMVKREHIKNEIEQLLGSLTARESRVLGLYFGLNGETPMSF 377

Query: 184 EEIGRLLNLSRERIRQIHCIALTKLRQI 101
           EEIG+ L LSRER+RQI+ IAL KLR +
Sbjct: 378 EEIGKSLKLSRERVRQINGIALKKLRNV 405


>ref|XP_006345495.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
           [Solanum tuberosum]
          Length = 421

 Score =  157 bits (398), Expect(2) = 3e-75
 Identities = 84/148 (56%), Positives = 112/148 (75%), Gaps = 2/148 (1%)
 Frame = -2

Query: 541 GSMCEMLAKISEANTLLSRRLRRQPTYHEIADTIQVGVSIVRLVCERSRAPISIDRTITH 362
           GS+ E++ KI  ANT LSR+LRR P+Y EIA+ + + VS VRLV ER+RAPISID+ +T 
Sbjct: 262 GSISELVPKICNANTELSRKLRRMPSYDEIAEALGMDVSTVRLVIERNRAPISIDQIVTS 321

Query: 361 EGCSILQ-IIPGPDELRPETIVNKQLMKQQVQTLL-KTLNEREELILRLHYGLNGETPRS 188
           +G   LQ II GP++  PE  V +Q+MKQ ++ +L   L +RE  IL+LH+GLNG+ P+S
Sbjct: 322 QGYMSLQNIISGPEDTTPEENVKRQMMKQDLEKILHNVLCDREAKILKLHFGLNGDNPQS 381

Query: 187 CEEIGRLLNLSRERIRQIHCIALTKLRQ 104
            EEIGR+L LSRERIRQI+C AL+KLR+
Sbjct: 382 FEEIGRVLKLSRERIRQINCTALSKLRE 409



 Score =  153 bits (386), Expect(2) = 3e-75
 Identities = 84/163 (51%), Positives = 110/163 (67%), Gaps = 4/163 (2%)
 Frame = -3

Query: 1032 SSCDGLEQNWSIRSSRSV----YLTSREDAQFSLYLKEGTRLXXXXXXXXXXXXXXXXXX 865
            S C  +E+   I +S+ +    YLT  E+A++S YLKE  R+                  
Sbjct: 101  SECLEMEKGDRILNSKPLKTGFYLTHEEEAKYSWYLKEEARIEILRKMVEETSEIDLSSK 160

Query: 864  XSQWAEAAGMNKRSLERTLCRARESRERITLSYRRLVVWIATAYQGKGLSLQDLIQEGSI 685
              Q A+AAGM+ + L++ L  A+ES+++I   YR LVV +A +YQGKGLSLQDLIQEGSI
Sbjct: 161  --QLAKAAGMSTQRLDKLLINAKESQKKIIQCYRGLVVSVAASYQGKGLSLQDLIQEGSI 218

Query: 684  GLLRGVERFDPKKGYKLSTYVYWWIKQAIIRAIANKSRMIRLP 556
            GLL G ++F+PKKGYKLSTY YWWI+QAI RA+ANKSR+IRLP
Sbjct: 219  GLLHGAKKFNPKKGYKLSTYAYWWIRQAISRAVANKSRVIRLP 261


>ref|XP_006379084.1| hypothetical protein POPTR_0009s06210g [Populus trichocarpa]
           gi|550331146|gb|ERP56881.1| hypothetical protein
           POPTR_0009s06210g [Populus trichocarpa]
          Length = 423

 Score =  159 bits (403), Expect(2) = 2e-74
 Identities = 83/148 (56%), Positives = 104/148 (70%)
 Frame = -3

Query: 999 IRSSRSVYLTSREDAQFSLYLKEGTRLXXXXXXXXXXXXXXXXXXXSQWAEAAGMNKRSL 820
           + S +  YL+ +E+A+FS+ LK   R+                    Q A+A  M K S+
Sbjct: 118 LESVKRGYLSPKEEAEFSMCLKHEARIEAARRRIGEVQELDPTSK--QLAKALRMEKNSV 175

Query: 819 ERTLCRARESRERITLSYRRLVVWIATAYQGKGLSLQDLIQEGSIGLLRGVERFDPKKGY 640
           +  LC+ RESRE+I  SYRRLVV IAT+YQ KGLSLQDLIQEGSIGLLRG ERFDP++GY
Sbjct: 176 DNVLCKGRESREKIIRSYRRLVVSIATSYQDKGLSLQDLIQEGSIGLLRGAERFDPQRGY 235

Query: 639 KLSTYVYWWIKQAIIRAIANKSRMIRLP 556
           KLSTYVYWWIK+AI+ AI+N +RM+RLP
Sbjct: 236 KLSTYVYWWIKEAILTAISNNTRMVRLP 263



 Score =  149 bits (375), Expect(2) = 2e-74
 Identities = 80/142 (56%), Positives = 106/142 (74%), Gaps = 2/142 (1%)
 Frame = -2

Query: 526 MLAKISEANTLLSRRLRRQPTYHEIADTIQVGVSIVRLVCERSRAPISIDRTITHEGCSI 347
           ++AKI+ AN  LS +LRR P+Y EIA  + + VS VRL  ER R+PIS+D+ +  +    
Sbjct: 269 LVAKIAGANNDLSNKLRRSPSYDEIAKVLNMKVSTVRLGFERGRSPISLDQAVLGQNSLT 328

Query: 346 LQ-IIPGPDELRPETIVNKQLMKQQVQTLLKT-LNEREELILRLHYGLNGETPRSCEEIG 173
           LQ IIPGPDE  PE +V ++L+KQ+++ L +T L ERE  ILRLH+GLNG+TP+SCEEIG
Sbjct: 329 LQEIIPGPDETIPENMVKRELLKQELEKLFQTVLTEREAHILRLHFGLNGQTPQSCEEIG 388

Query: 172 RLLNLSRERIRQIHCIALTKLR 107
           RL+ LSRER+RQI   AL+KLR
Sbjct: 389 RLVKLSRERVRQIIGTALSKLR 410


>ref|XP_003599439.1| RNA polymerase sigma factor [Medicago truncatula]
           gi|355488487|gb|AES69690.1| RNA polymerase sigma factor
           [Medicago truncatula]
          Length = 403

 Score =  173 bits (438), Expect(2) = 2e-73
 Identities = 94/147 (63%), Positives = 116/147 (78%), Gaps = 1/147 (0%)
 Frame = -2

Query: 541 GSMCEMLAKISEANTLLSRRLRRQPTYHEIADTIQVGVSIVRLVCERSRAPISIDRTITH 362
           G    M+AKI+EAN +L RRLRR+PTY+EIA+ + V VS V+LV ERSR PIS+DR+IT 
Sbjct: 245 GEKYGMVAKIAEANNVLRRRLRRKPTYNEIAEVLNVNVSTVKLVSERSRQPISLDRSITD 304

Query: 361 EGCSIL-QIIPGPDELRPETIVNKQLMKQQVQTLLKTLNEREELILRLHYGLNGETPRSC 185
           +   IL +IIPGP E+ PE +V +QLMKQ V  LL TL++REE I+RL++GLNGETP S 
Sbjct: 305 QSNLILKEIIPGPVEMIPEKMVERQLMKQGVVKLLNTLDKREEEIVRLYFGLNGETPLSF 364

Query: 184 EEIGRLLNLSRERIRQIHCIALTKLRQ 104
           EEIG+LL LSRERIRQIH IAL+KL Q
Sbjct: 365 EEIGKLLKLSRERIRQIHGIALSKLEQ 391



 Score =  131 bits (330), Expect(2) = 2e-73
 Identities = 71/154 (46%), Positives = 94/154 (61%)
 Frame = -3

Query: 1017 LEQNWSIRSSRSVYLTSREDAQFSLYLKEGTRLXXXXXXXXXXXXXXXXXXXSQWAEAAG 838
            L Q   + S  S +L+S ++A+  L LKEG ++                   +       
Sbjct: 98   LRQKVVVGSVTSGFLSSTDEAELCLCLKEGAKIEVAKQRMTEQEGNSAISRFT------- 150

Query: 837  MNKRSLERTLCRARESRERITLSYRRLVVWIATAYQGKGLSLQDLIQEGSIGLLRGVERF 658
            +   S+++ L   R+S+ER+   YR LV  IA  YQGKGLS+QDLIQEG+IGLL G E+F
Sbjct: 151  LENTSVDKVLINTRKSKERLARDYRGLVASIAAHYQGKGLSIQDLIQEGTIGLLHGAEKF 210

Query: 657  DPKKGYKLSTYVYWWIKQAIIRAIANKSRMIRLP 556
            DP +G KLSTYVYWWIKQ II+A+A KSR+IRLP
Sbjct: 211  DPNRGCKLSTYVYWWIKQGIIKALAKKSRLIRLP 244


>ref|XP_004231123.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
           [Solanum lycopersicum]
          Length = 442

 Score =  159 bits (403), Expect(2) = 1e-72
 Identities = 85/148 (57%), Positives = 114/148 (77%), Gaps = 2/148 (1%)
 Frame = -2

Query: 541 GSMCEMLAKISEANTLLSRRLRRQPTYHEIADTIQVGVSIVRLVCERSRAPISIDRTITH 362
           GS+ E++ KI  ANT LSR+LRR P+Y EIA+ + + VS VRLV ER+RAPISID+ +T 
Sbjct: 283 GSISELVPKICNANTELSRKLRRMPSYDEIAEALGMDVSTVRLVIERNRAPISIDQIVTT 342

Query: 361 EGCSILQ-IIPGPDELRPETIVNKQLMKQQVQTLLKT-LNEREELILRLHYGLNGETPRS 188
           +G   LQ II GP++  PE  V +Q+MKQ ++ +L+  L +RE  IL+LH+GLNG+TP+S
Sbjct: 343 QGYMSLQNIISGPEDTTPEENVKRQMMKQDLEKILQNVLCDREAKILKLHFGLNGDTPQS 402

Query: 187 CEEIGRLLNLSRERIRQIHCIALTKLRQ 104
            EEIGR+L LSRERIRQI+C AL+KLR+
Sbjct: 403 FEEIGRVLKLSRERIRQINCTALSKLRE 430



 Score =  142 bits (359), Expect(2) = 1e-72
 Identities = 69/101 (68%), Positives = 85/101 (84%)
 Frame = -3

Query: 858 QWAEAAGMNKRSLERTLCRARESRERITLSYRRLVVWIATAYQGKGLSLQDLIQEGSIGL 679
           Q A+AAGM+ R L++ L  A+ES+++I   YR LVV +A +YQGKGLSLQDLIQEGSIGL
Sbjct: 182 QLAKAAGMSTRRLDKLLINAKESQKKIIQCYRGLVVSVAASYQGKGLSLQDLIQEGSIGL 241

Query: 678 LRGVERFDPKKGYKLSTYVYWWIKQAIIRAIANKSRMIRLP 556
           L G ++F+PKKGYKLSTY YWWI+QAI RA+ANKSR+IRLP
Sbjct: 242 LHGAKKFNPKKGYKLSTYAYWWIRQAISRAVANKSRVIRLP 282


>ref|XP_006379083.1| hypothetical protein POPTR_0009s06210g [Populus trichocarpa]
           gi|550331145|gb|ERP56880.1| hypothetical protein
           POPTR_0009s06210g [Populus trichocarpa]
          Length = 419

 Score =  153 bits (387), Expect(2) = 1e-72
 Identities = 82/155 (52%), Positives = 106/155 (68%)
 Frame = -3

Query: 999 IRSSRSVYLTSREDAQFSLYLKEGTRLXXXXXXXXXXXXXXXXXXXSQWAEAAGMNKRSL 820
           + S +  YL+ +E+A+FS+ LK   R+                    Q A+A  M K S+
Sbjct: 118 LESVKRGYLSPKEEAEFSMCLKHEARIEAARRRIGEVQELDPTSK--QLAKALRMEKNSV 175

Query: 819 ERTLCRARESRERITLSYRRLVVWIATAYQGKGLSLQDLIQEGSIGLLRGVERFDPKKGY 640
           +  LC+ RESRE+I  SYRRLVV IAT+YQ KGLSLQDLIQEGSIGLLRG ERFDP++GY
Sbjct: 176 DNVLCKGRESREKIIRSYRRLVVSIATSYQDKGLSLQDLIQEGSIGLLRGAERFDPQRGY 235

Query: 639 KLSTYVYWWIKQAIIRAIANKSRMIRLPLVMCREA 535
           KLSTYVYWWIK+AI+ AI+N +RM R  +++ + A
Sbjct: 236 KLSTYVYWWIKEAILTAISNNTRMRRWWMLVAKIA 270



 Score =  149 bits (375), Expect(2) = 1e-72
 Identities = 80/142 (56%), Positives = 106/142 (74%), Gaps = 2/142 (1%)
 Frame = -2

Query: 526 MLAKISEANTLLSRRLRRQPTYHEIADTIQVGVSIVRLVCERSRAPISIDRTITHEGCSI 347
           ++AKI+ AN  LS +LRR P+Y EIA  + + VS VRL  ER R+PIS+D+ +  +    
Sbjct: 265 LVAKIAGANNDLSNKLRRSPSYDEIAKVLNMKVSTVRLGFERGRSPISLDQAVLGQNSLT 324

Query: 346 LQ-IIPGPDELRPETIVNKQLMKQQVQTLLKT-LNEREELILRLHYGLNGETPRSCEEIG 173
           LQ IIPGPDE  PE +V ++L+KQ+++ L +T L ERE  ILRLH+GLNG+TP+SCEEIG
Sbjct: 325 LQEIIPGPDETIPENMVKRELLKQELEKLFQTVLTEREAHILRLHFGLNGQTPQSCEEIG 384

Query: 172 RLLNLSRERIRQIHCIALTKLR 107
           RL+ LSRER+RQI   AL+KLR
Sbjct: 385 RLVKLSRERVRQIIGTALSKLR 406


>ref|XP_007148893.1| hypothetical protein PHAVU_005G023100g [Phaseolus vulgaris]
           gi|561022157|gb|ESW20887.1| hypothetical protein
           PHAVU_005G023100g [Phaseolus vulgaris]
          Length = 366

 Score =  161 bits (407), Expect(2) = 1e-72
 Identities = 84/155 (54%), Positives = 117/155 (75%), Gaps = 1/155 (0%)
 Frame = -2

Query: 529 EMLAKISEANTLLSRRLRRQPTYHEIADTIQVGVSIVRLVCERSRAPISIDRTITHEGCS 350
           EM+AK+++AN +LS RLRR+PTY E A+ + V  S +RLV E+SR PIS+D+ +T  G  
Sbjct: 212 EMVAKVAQANNILSSRLRRKPTYDETAEVLNVKASTIRLVSEKSRKPISLDKVVTDCGHM 271

Query: 349 ILQ-IIPGPDELRPETIVNKQLMKQQVQTLLKTLNEREELILRLHYGLNGETPRSCEEIG 173
            LQ IIPGP+++ PE +V +QLMKQ+V  LL TL++RE  I+ L+YGLNGETP + +EIG
Sbjct: 272 TLQEIIPGPEDMTPEKMVKRQLMKQEVMKLLNTLSKREAEIVTLYYGLNGETPLTFKEIG 331

Query: 172 RLLNLSRERIRQIHCIALTKLRQILL*VN*RIHMV 68
            ++ LSRERIRQI+ IAL+KLRQ  +  N + ++V
Sbjct: 332 GMMQLSRERIRQINGIALSKLRQTSIIDNLKFYLV 366



 Score =  140 bits (354), Expect(2) = 1e-72
 Identities = 76/166 (45%), Positives = 104/166 (62%), Gaps = 1/166 (0%)
 Frame = -3

Query: 1050 MSNLDSSSCDGLEQNWSIRSSRSVYLTSREDAQFSLYLKEGT-RLXXXXXXXXXXXXXXX 874
            + N ++ S  G  ++W        YL+SRE+A+  L L+  + +                
Sbjct: 50   IGNNENGSIVGFRKSW--------YLSSREEAELCLDLRVSSDKTQTPQQGAKSEVAKLI 101

Query: 873  XXXXSQWAEAAGMNKRSLERTLCRARESRERITLSYRRLVVWIATAYQGKGLSLQDLIQE 694
                 + +    M+  SL++ LC ARES+ER+   YR LV  IA  Y GKGLSLQDLIQE
Sbjct: 102  TKGLEEHSAIPIMSLLSLDKALCNARESKERLANDYRGLVTSIAAGYLGKGLSLQDLIQE 161

Query: 693  GSIGLLRGVERFDPKKGYKLSTYVYWWIKQAIIRAIANKSRMIRLP 556
            G++GLLRG E+F+P++GYKLSTYVYWWIKQA+I+AIA KSR++RLP
Sbjct: 162  GTVGLLRGAEKFEPERGYKLSTYVYWWIKQAMIKAIARKSRLVRLP 207


>ref|XP_007148895.1| hypothetical protein PHAVU_005G023100g [Phaseolus vulgaris]
           gi|561022159|gb|ESW20889.1| hypothetical protein
           PHAVU_005G023100g [Phaseolus vulgaris]
          Length = 367

 Score =  161 bits (407), Expect(2) = 5e-72
 Identities = 84/155 (54%), Positives = 117/155 (75%), Gaps = 1/155 (0%)
 Frame = -2

Query: 529 EMLAKISEANTLLSRRLRRQPTYHEIADTIQVGVSIVRLVCERSRAPISIDRTITHEGCS 350
           EM+AK+++AN +LS RLRR+PTY E A+ + V  S +RLV E+SR PIS+D+ +T  G  
Sbjct: 213 EMVAKVAQANNILSSRLRRKPTYDETAEVLNVKASTIRLVSEKSRKPISLDKVVTDCGHM 272

Query: 349 ILQ-IIPGPDELRPETIVNKQLMKQQVQTLLKTLNEREELILRLHYGLNGETPRSCEEIG 173
            LQ IIPGP+++ PE +V +QLMKQ+V  LL TL++RE  I+ L+YGLNGETP + +EIG
Sbjct: 273 TLQEIIPGPEDMTPEKMVKRQLMKQEVMKLLNTLSKREAEIVTLYYGLNGETPLTFKEIG 332

Query: 172 RLLNLSRERIRQIHCIALTKLRQILL*VN*RIHMV 68
            ++ LSRERIRQI+ IAL+KLRQ  +  N + ++V
Sbjct: 333 GMMQLSRERIRQINGIALSKLRQTSIIDNLKFYLV 367



 Score =  139 bits (349), Expect(2) = 5e-72
 Identities = 77/167 (46%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
 Frame = -3

Query: 1050 MSNLDSSSCDGLEQNWSIRSSRSVYLTSREDAQFSLYLKEGTRLXXXXXXXXXXXXXXXX 871
            + N ++ S  G  ++W        YL+SRE+A+  L L+  +                  
Sbjct: 50   IGNNENGSIVGFRKSW--------YLSSREEAELCLDLRVSSDKTQTPQQQGAKSEVAKL 101

Query: 870  XXXSQWAEAAG--MNKRSLERTLCRARESRERITLSYRRLVVWIATAYQGKGLSLQDLIQ 697
                    +A   M+  SL++ LC ARES+ER+   YR LV  IA  Y GKGLSLQDLIQ
Sbjct: 102  ITKGLEEHSAIPIMSLLSLDKALCNARESKERLANDYRGLVTSIAAGYLGKGLSLQDLIQ 161

Query: 696  EGSIGLLRGVERFDPKKGYKLSTYVYWWIKQAIIRAIANKSRMIRLP 556
            EG++GLLRG E+F+P++GYKLSTYVYWWIKQA+I+AIA KSR++RLP
Sbjct: 162  EGTVGLLRGAEKFEPERGYKLSTYVYWWIKQAMIKAIARKSRLVRLP 208


>ref|XP_003599441.1| RNA polymerase sigma factor [Medicago truncatula]
           gi|355488489|gb|AES69692.1| RNA polymerase sigma factor
           [Medicago truncatula]
          Length = 267

 Score =  173 bits (438), Expect(2) = 1e-71
 Identities = 94/147 (63%), Positives = 116/147 (78%), Gaps = 1/147 (0%)
 Frame = -2

Query: 541 GSMCEMLAKISEANTLLSRRLRRQPTYHEIADTIQVGVSIVRLVCERSRAPISIDRTITH 362
           G    M+AKI+EAN +L RRLRR+PTY+EIA+ + V VS V+LV ERSR PIS+DR+IT 
Sbjct: 109 GEKYGMVAKIAEANNVLRRRLRRKPTYNEIAEVLNVNVSTVKLVSERSRQPISLDRSITD 168

Query: 361 EGCSIL-QIIPGPDELRPETIVNKQLMKQQVQTLLKTLNEREELILRLHYGLNGETPRSC 185
           +   IL +IIPGP E+ PE +V +QLMKQ V  LL TL++REE I+RL++GLNGETP S 
Sbjct: 169 QSNLILKEIIPGPVEMIPEKMVERQLMKQGVVKLLNTLDKREEEIVRLYFGLNGETPLSF 228

Query: 184 EEIGRLLNLSRERIRQIHCIALTKLRQ 104
           EEIG+LL LSRERIRQIH IAL+KL Q
Sbjct: 229 EEIGKLLKLSRERIRQIHGIALSKLEQ 255



 Score =  125 bits (315), Expect(2) = 1e-71
 Identities = 59/94 (62%), Positives = 73/94 (77%)
 Frame = -3

Query: 837 MNKRSLERTLCRARESRERITLSYRRLVVWIATAYQGKGLSLQDLIQEGSIGLLRGVERF 658
           +   S+++ L   R+S+ER+   YR LV  IA  YQGKGLS+QDLIQEG+IGLL G E+F
Sbjct: 15  LENTSVDKVLINTRKSKERLARDYRGLVASIAAHYQGKGLSIQDLIQEGTIGLLHGAEKF 74

Query: 657 DPKKGYKLSTYVYWWIKQAIIRAIANKSRMIRLP 556
           DP +G KLSTYVYWWIKQ II+A+A KSR+IRLP
Sbjct: 75  DPNRGCKLSTYVYWWIKQGIIKALAKKSRLIRLP 108


>ref|XP_004499937.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
           [Cicer arietinum]
          Length = 407

 Score =  163 bits (413), Expect(2) = 6e-71
 Identities = 87/150 (58%), Positives = 114/150 (76%), Gaps = 1/150 (0%)
 Frame = -2

Query: 541 GSMCEMLAKISEANTLLSRRLRRQPTYHEIADTIQVGVSIVRLVCERSRAPISIDRTITH 362
           G    M+ KI+EA  +LS+RLRR+PTY+E+A+ + V VSIV+LV ERSR PIS+D+ +  
Sbjct: 249 GEKYGMVGKIAEAKNVLSKRLRRKPTYNEMAEVLNVNVSIVKLVSERSRQPISLDKAVFD 308

Query: 361 EG-CSILQIIPGPDELRPETIVNKQLMKQQVQTLLKTLNEREELILRLHYGLNGETPRSC 185
           +G  ++ +I+PGP E+ PE +V +QL KQ V  LL TLN+RE  ILRL++GLNGETP S 
Sbjct: 309 QGNLTLKEIMPGPVEMIPEKMVERQLKKQGVVKLLNTLNKREAEILRLYFGLNGETPLSF 368

Query: 184 EEIGRLLNLSRERIRQIHCIALTKLRQILL 95
           EEIG+ L LSRERIRQIH IAL+KL+Q  L
Sbjct: 369 EEIGKQLKLSRERIRQIHGIALSKLQQTTL 398



 Score =  133 bits (334), Expect(2) = 6e-71
 Identities = 71/156 (45%), Positives = 93/156 (59%)
 Frame = -3

Query: 1023 DGLEQNWSIRSSRSVYLTSREDAQFSLYLKEGTRLXXXXXXXXXXXXXXXXXXXSQWAEA 844
            + ++ N+S       +L+S E+A+  L LKEG R+                      +  
Sbjct: 99   ENIQNNFSREKELVGFLSSIEEAEICLGLKEGARIEVSKHRMTEHEGNSSI------SRR 152

Query: 843  AGMNKRSLERTLCRARESRERITLSYRRLVVWIATAYQGKGLSLQDLIQEGSIGLLRGVE 664
                  SL++ L   RES+ER+   YR LV  IA  YQGKGLS QDL QEG+IGLL G E
Sbjct: 153  LAHGNTSLDKVLSNTRESKERLAHEYRGLVASIAARYQGKGLSFQDLTQEGTIGLLHGAE 212

Query: 663  RFDPKKGYKLSTYVYWWIKQAIIRAIANKSRMIRLP 556
            +FDP +G KLSTYVYWWIKQAI++A+A KSR++RLP
Sbjct: 213  KFDPNRGCKLSTYVYWWIKQAILKALARKSRLVRLP 248


>ref|XP_004149725.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
            [Cucumis sativus]
          Length = 436

 Score =  145 bits (366), Expect(2) = 2e-68
 Identities = 79/156 (50%), Positives = 99/156 (63%), Gaps = 3/156 (1%)
 Frame = -3

Query: 1014 EQNWSIRSS---RSVYLTSREDAQFSLYLKEGTRLXXXXXXXXXXXXXXXXXXXSQWAEA 844
            E+NW   SS   R  YL+ +E+A+  L LKE   L                    Q A A
Sbjct: 124  EENWIALSSGPLRPGYLSPKEEAELCLCLKEAVLLENVKTRIMETQEHEPTNK--QLAIA 181

Query: 843  AGMNKRSLERTLCRARESRERITLSYRRLVVWIATAYQGKGLSLQDLIQEGSIGLLRGVE 664
             G     ++R LCRARESR+R+   Y +LV+ IA  YQGKGLSLQDL QEG+IGLL+G E
Sbjct: 182  MGTKSGCIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAE 241

Query: 663  RFDPKKGYKLSTYVYWWIKQAIIRAIANKSRMIRLP 556
            RF+P +G+KLSTY YWWI+QAIIRA+  KSR++RLP
Sbjct: 242  RFEPNRGHKLSTYAYWWIRQAIIRALDKKSRLVRLP 277



 Score =  142 bits (359), Expect(2) = 2e-68
 Identities = 74/147 (50%), Positives = 107/147 (72%), Gaps = 1/147 (0%)
 Frame = -2

Query: 541 GSMCEMLAKISEANTLLSRRLRRQPTYHEIADTIQVGVSIVRLVCERSRAPISIDRTITH 362
           G M +M+A+I+E N  L  +L R PT  E+A++++V +S +RLV ERS+ PISI++ +  
Sbjct: 278 GHMGQMVARIAEENNHLGIKLSRPPTNKEVAESLKVHLSTIRLVMERSKRPISINQPVND 337

Query: 361 EGCSILQ-IIPGPDELRPETIVNKQLMKQQVQTLLKTLNEREELILRLHYGLNGETPRSC 185
             C  LQ I+PGPD L PE +V ++LMKQ+++ LL TL++RE  IL L++GLNGE P+S 
Sbjct: 338 RSCLTLQEIMPGPDNLTPENMVMRKLMKQELKRLLNTLSKREARILSLYFGLNGEIPQSF 397

Query: 184 EEIGRLLNLSRERIRQIHCIALTKLRQ 104
           EEIG+ LNLSRE IRQ +   L+KL++
Sbjct: 398 EEIGKSLNLSRETIRQTNIATLSKLKK 424


>ref|XP_004169825.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
            [Cucumis sativus]
          Length = 341

 Score =  145 bits (366), Expect(2) = 2e-68
 Identities = 79/156 (50%), Positives = 99/156 (63%), Gaps = 3/156 (1%)
 Frame = -3

Query: 1014 EQNWSIRSS---RSVYLTSREDAQFSLYLKEGTRLXXXXXXXXXXXXXXXXXXXSQWAEA 844
            E+NW   SS   R  YL+ +E+A+  L LKE   L                    Q A A
Sbjct: 29   EENWIALSSGPLRPGYLSPKEEAELCLCLKEAVLLENVKTRIMETQEHEPTNK--QLAIA 86

Query: 843  AGMNKRSLERTLCRARESRERITLSYRRLVVWIATAYQGKGLSLQDLIQEGSIGLLRGVE 664
             G     ++R LCRARESR+R+   Y +LV+ IA  YQGKGLSLQDL QEG+IGLL+G E
Sbjct: 87   MGTKSGCIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAE 146

Query: 663  RFDPKKGYKLSTYVYWWIKQAIIRAIANKSRMIRLP 556
            RF+P +G+KLSTY YWWI+QAIIRA+  KSR++RLP
Sbjct: 147  RFEPNRGHKLSTYAYWWIRQAIIRALDKKSRLVRLP 182



 Score =  142 bits (359), Expect(2) = 2e-68
 Identities = 74/147 (50%), Positives = 107/147 (72%), Gaps = 1/147 (0%)
 Frame = -2

Query: 541 GSMCEMLAKISEANTLLSRRLRRQPTYHEIADTIQVGVSIVRLVCERSRAPISIDRTITH 362
           G M +M+A+I+E N  L  +L R PT  E+A++++V +S +RLV ERS+ PISI++ +  
Sbjct: 183 GHMGQMVARIAEENNHLGIKLSRPPTNKEVAESLKVHLSTIRLVMERSKRPISINQPVND 242

Query: 361 EGCSILQ-IIPGPDELRPETIVNKQLMKQQVQTLLKTLNEREELILRLHYGLNGETPRSC 185
             C  LQ I+PGPD L PE +V ++LMKQ+++ LL TL++RE  IL L++GLNGE P+S 
Sbjct: 243 RSCLTLQEIMPGPDNLTPENMVMRKLMKQELKRLLNTLSKREARILSLYFGLNGEIPQSF 302

Query: 184 EEIGRLLNLSRERIRQIHCIALTKLRQ 104
           EEIG+ LNLSRE IRQ +   L+KL++
Sbjct: 303 EEIGKSLNLSRETIRQTNIATLSKLKK 329


>ref|XP_002517769.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
           gi|223543041|gb|EEF44576.1| RNA polymerase sigma factor
           rpoD, putative [Ricinus communis]
          Length = 389

 Score =  149 bits (375), Expect(2) = 1e-65
 Identities = 79/141 (56%), Positives = 100/141 (70%)
 Frame = -3

Query: 978 YLTSREDAQFSLYLKEGTRLXXXXXXXXXXXXXXXXXXXSQWAEAAGMNKRSLERTLCRA 799
           YL+S E+A+F L LK+  R+                    Q AEA  M K+++++ LC+ 
Sbjct: 116 YLSSIEEAEFCLCLKDHARVEAARRRIAETQEHEPTSK--QLAEALRMRKKNVDKILCKG 173

Query: 798 RESRERITLSYRRLVVWIATAYQGKGLSLQDLIQEGSIGLLRGVERFDPKKGYKLSTYVY 619
           R+SRERIT +YRRLV+ IA  Y+GKGLSLQDLIQEGSIGLLRG ERFDPK+G KLSTYVY
Sbjct: 174 RQSRERITGNYRRLVLSIANRYRGKGLSLQDLIQEGSIGLLRGAERFDPKRGNKLSTYVY 233

Query: 618 WWIKQAIIRAIANKSRMIRLP 556
           WWIK+AII +I+  SR++R P
Sbjct: 234 WWIKEAIITSISINSRIVRQP 254



 Score =  130 bits (326), Expect(2) = 1e-65
 Identities = 67/132 (50%), Positives = 95/132 (71%), Gaps = 1/132 (0%)
 Frame = -2

Query: 538 SMCEMLAKISEANTLLSRRLRRQPTYHEIADTIQVGVSIVRLVCERSRAPISIDRTITHE 359
           S+ +   KI+EA   L+ RL R P+Y EIA  + V VS VRLV  RSR+ +S+D+ ++ +
Sbjct: 256 SLWDRTTKIAEAKISLTERLGRLPSYREIAKELNVHVSTVRLVFSRSRSTVSLDQAVSDQ 315

Query: 358 GCSILQ-IIPGPDELRPETIVNKQLMKQQVQTLLKTLNEREELILRLHYGLNGETPRSCE 182
           G   LQ IIPGP+E+ PE +V KQL+K++++ L++TL +RE   LRL +GLNG+TP+SC+
Sbjct: 316 GGMTLQEIIPGPEEMMPENMVKKQLLKKELEELIQTLGKREAHTLRLIFGLNGQTPQSCD 375

Query: 181 EIGRLLNLSRER 146
           EIGR L L RER
Sbjct: 376 EIGRSLKLCRER 387


>ref|XP_002873625.1| hypothetical protein ARALYDRAFT_909325 [Arabidopsis lyrata subsp.
           lyrata] gi|297319462|gb|EFH49884.1| hypothetical protein
           ARALYDRAFT_909325 [Arabidopsis lyrata subsp. lyrata]
          Length = 273

 Score =  154 bits (390), Expect(2) = 3e-62
 Identities = 79/148 (53%), Positives = 110/148 (74%), Gaps = 1/148 (0%)
 Frame = -2

Query: 541 GSMCEMLAKISEANTLLSRRLRRQPTYHEIADTIQVGVSIVRLVCERSRAPISIDRTITH 362
           GSM E+ AK++EA+ +L+R+LRRQP+  EIA+ + + VS VRL  ERSR+P+S+DR ++ 
Sbjct: 112 GSMWELTAKVAEASNVLTRKLRRQPSCEEIAEHLNLHVSAVRLAVERSRSPVSLDRVVSQ 171

Query: 361 EGCSILQ-IIPGPDELRPETIVNKQLMKQQVQTLLKTLNEREELILRLHYGLNGETPRSC 185
            G   LQ I+ GPDE RPE +V ++ MK +++ LL +L  RE  +L L++GLNGETP S 
Sbjct: 172 NGRMTLQEIVRGPDETRPEEMVKREHMKHEIEQLLGSLTARESRVLGLYFGLNGETPMSF 231

Query: 184 EEIGRLLNLSRERIRQIHCIALTKLRQI 101
           EEIG+ L LSRER+RQI+ IAL KLR +
Sbjct: 232 EEIGKSLKLSRERVRQINGIALKKLRNV 259



 Score =  113 bits (282), Expect(2) = 3e-62
 Identities = 53/67 (79%), Positives = 61/67 (91%)
 Frame = -3

Query: 756 VVWIATAYQGKGLSLQDLIQEGSIGLLRGVERFDPKKGYKLSTYVYWWIKQAIIRAIANK 577
           +VW    YQGKGL+LQDLIQEGSIGLLRG ERFDP +GYKLSTYVYWWIKQAI+RAIA+K
Sbjct: 49  LVW----YQGKGLNLQDLIQEGSIGLLRGAERFDPDRGYKLSTYVYWWIKQAILRAIAHK 104

Query: 576 SRMIRLP 556
           SR+++LP
Sbjct: 105 SRLVKLP 111