BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia23_contig00024527
         (1331 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_007205588.1| hypothetical protein PRUPE_ppa008866mg [Prun...   454   e-125
ref|XP_006433526.1| hypothetical protein CICLE_v10001637mg [Citr...   434   e-119
ref|XP_007031140.1| Pseudouridine synthase family protein isofor...   431   e-118
ref|XP_006472187.1| PREDICTED: RNA pseudouridine synthase 1-like...   431   e-118
ref|XP_002512503.1| ribosomal pseudouridine synthase, putative [...   431   e-118
ref|XP_004304865.1| PREDICTED: RNA pseudourine synthase 1-like [...   430   e-118
ref|XP_007031141.1| Pseudouridine synthase family protein isofor...   429   e-117
gb|EXC51319.1| RNA pseudourine synthase 1 [Morus notabilis]           414   e-113
gb|EXB98832.1| RNA pseudourine synthase 1 [Morus notabilis]           414   e-113
ref|XP_004144814.1| PREDICTED: RNA pseudourine synthase 1-like [...   413   e-113
ref|XP_004158751.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudour...   412   e-112
ref|XP_002278016.2| PREDICTED: RNA pseudourine synthase 1-like [...   410   e-112
ref|XP_006344754.1| PREDICTED: RNA pseudouridine synthase 1-like...   407   e-111
ref|XP_004495663.1| PREDICTED: RNA pseudourine synthase 1-like [...   407   e-111
ref|XP_004230301.1| PREDICTED: RNA pseudourine synthase 1-like [...   407   e-111
ref|XP_003591214.1| Lon protease-like protein [Medicago truncatu...   402   e-109
gb|EYU37245.1| hypothetical protein MIMGU_mgv1a010081mg [Mimulus...   390   e-106
ref|XP_003555184.1| PREDICTED: RNA pseudouridine synthase 1-like...   386   e-104
ref|XP_006855276.1| hypothetical protein AMTR_s00057p00025150 [A...   385   e-104
ref|XP_007144996.1| hypothetical protein PHAVU_007G200900g [Phas...   384   e-104

>ref|XP_007205588.1| hypothetical protein PRUPE_ppa008866mg [Prunus persica]
            gi|462401230|gb|EMJ06787.1| hypothetical protein
            PRUPE_ppa008866mg [Prunus persica]
          Length = 316

 Score =  454 bits (1167), Expect = e-125
 Identities = 225/312 (72%), Positives = 255/312 (81%), Gaps = 2/312 (0%)
 Frame = -3

Query: 1119 FDSAKRDDLNDPKTL-NYPKPLSPPLPAISKQIELNRANSASLKSNLFSLSETDIIFEDE 943
            FD+      N  +T  NYP PLSPPLP ISK IEL RA SAS KS+LFSLS  D++FED+
Sbjct: 5    FDAINPSSQNALQTSQNYPVPLSPPLPPISKHIELARAMSASSKSSLFSLSRDDVVFEDQ 64

Query: 942  WLIVVNKPEGVYCESVLSSIPLFLTDSMRPRFQTDPLELHMANRLDRDTSGLMVITKSHK 763
            WLIVVNKP+GVYCESVL S+P  L DS       + LELH+ANRLDRDTSGLMVITKSHK
Sbjct: 65   WLIVVNKPQGVYCESVLESVPQLLCDSAESGTPANQLELHLANRLDRDTSGLMVITKSHK 124

Query: 762  IAGKLVKAFTDHKVTKTYIALCIGQAPKWETISIKSGHGRSKFGVWRVYSASDVGRKLPG 583
            +A KLVKAFTDHK++KTYIA CIG APKWE I++KSGHGRSKFG WRVY+ASDVGR LPG
Sbjct: 125  VASKLVKAFTDHKISKTYIARCIGSAPKWERITLKSGHGRSKFGAWRVYAASDVGRTLPG 184

Query: 582  GSVVRDMATKFEVLSISGQGSFKEPTKLRPNGEEFLVVEDPSV-KGDDENDEILVRAYPR 406
            GS+VRDM T FEVLSI+GQGS KEP++ + +    +VV++ +V   D + DEILVRA PR
Sbjct: 185  GSMVRDMETSFEVLSINGQGSLKEPSEFKKDEANTIVVQEKAVIDKDTKKDEILVRARPR 244

Query: 405  SGRTHQIRLHCQYLGISIRGDVKYEGVYEWRGRTYDGHALHAESLSFDHPITGLQVEFQA 226
            SGRTHQIRLHCQYLGISIRGDVKYEGVYEW+GRTYDGH LHAESLSF+HPITGL V FQA
Sbjct: 245  SGRTHQIRLHCQYLGISIRGDVKYEGVYEWKGRTYDGHELHAESLSFEHPITGLPVMFQA 304

Query: 225  PLPQWASQAFQP 190
            P+P WASQA QP
Sbjct: 305  PVPSWASQALQP 316


>ref|XP_006433526.1| hypothetical protein CICLE_v10001637mg [Citrus clementina]
            gi|567881937|ref|XP_006433527.1| hypothetical protein
            CICLE_v10001637mg [Citrus clementina]
            gi|557535648|gb|ESR46766.1| hypothetical protein
            CICLE_v10001637mg [Citrus clementina]
            gi|557535649|gb|ESR46767.1| hypothetical protein
            CICLE_v10001637mg [Citrus clementina]
          Length = 357

 Score =  434 bits (1116), Expect = e-119
 Identities = 214/306 (69%), Positives = 251/306 (82%), Gaps = 9/306 (2%)
 Frame = -3

Query: 1074 NYPKPLSPPLPAISKQIELNRANSASLKSNLFSLSETDIIFEDEWLIVVNKPEGVYCESV 895
            NYP PLSPPLPAISK IEL RA SAS KS+L+ LS +D+++EDEW + VNKP+GVYCESV
Sbjct: 51   NYPTPLSPPLPAISKDIELTRAMSASSKSSLYKLSRSDVLYEDEWFVAVNKPQGVYCESV 110

Query: 894  LSSIPLFLT-DSMRPRF-------QTDPLELHMANRLDRDTSGLMVITKSHKIAGKLVKA 739
            L+S+P FL  DS   +        + + LELH+ANRLDRDTSG+MVITKSHK+A KLVKA
Sbjct: 111  LASVPCFLAGDSAESKSGRLSEGTKLNLLELHLANRLDRDTSGVMVITKSHKVASKLVKA 170

Query: 738  FTDHKVTKTYIALCIGQAPKWETISIKSGHGRSKFGVWRVYSASDVGRKLPGGSVVRDMA 559
            FTDHKV+KTYIALCIG APKW+ I+I SGHGRSKFG WRVY+ASDVGR LPGGSVVRDM 
Sbjct: 171  FTDHKVSKTYIALCIGPAPKWKRITIISGHGRSKFGAWRVYAASDVGRVLPGGSVVRDMV 230

Query: 558  TKFEVLSISGQGSFKEPTKLRPNGEEFLVVEDPSV-KGDDENDEILVRAYPRSGRTHQIR 382
            T FEVLS++G+GSFKEP++L+ + E  +VVE  +V   D + +EILVRA+PRSGRTHQIR
Sbjct: 231  TSFEVLSVNGEGSFKEPSELQEHEENNIVVEKKAVLDADAKKNEILVRAFPRSGRTHQIR 290

Query: 381  LHCQYLGISIRGDVKYEGVYEWRGRTYDGHALHAESLSFDHPITGLQVEFQAPLPQWASQ 202
            LHCQYLGISIRGDVKYEGVYEW G+ YDGH LHAESLSFDHP+TG  V  QAPLP W ++
Sbjct: 291  LHCQYLGISIRGDVKYEGVYEWNGKRYDGHELHAESLSFDHPVTGCPVMVQAPLPLWGTE 350

Query: 201  AFQPAS 184
            A Q +S
Sbjct: 351  ALQSSS 356


>ref|XP_007031140.1| Pseudouridine synthase family protein isoform 1 [Theobroma cacao]
            gi|508719745|gb|EOY11642.1| Pseudouridine synthase family
            protein isoform 1 [Theobroma cacao]
          Length = 345

 Score =  431 bits (1108), Expect = e-118
 Identities = 221/347 (63%), Positives = 259/347 (74%), Gaps = 6/347 (1%)
 Frame = -3

Query: 1203 PTIFSKSSTTIRFLCNSTCLPIMADKTHFDSAKRDDLNDPKTLNYPKPLSPPLPAISKQI 1024
            P + SK   T+ FLC     P M+             N     NYP PLSPPLP+ISK I
Sbjct: 16   PKLLSKFPKTLLFLC-----PKMST------------NPNSHQNYPTPLSPPLPSISKDI 58

Query: 1023 ELNRANSASLKSNLFSLSETDIIFEDEWLIVVNKPEGVYCESVLSSIPLFLTDS-----M 859
            EL RA +AS KS+LF LS +DI++EDEWLI VNKP+G+YC+SVL+SIP FL+DS     +
Sbjct: 59   ELARAMTASSKSSLFELSRSDILYEDEWLIAVNKPQGIYCDSVLASIPRFLSDSTVSDRL 118

Query: 858  RPRFQTDPLELHMANRLDRDTSGLMVITKSHKIAGKLVKAFTDHKVTKTYIALCIGQAPK 679
                Q  P ELH+ANRLDRDTSG+MVITKSHK+A  LVKAFT+H V KTY+A CIG APK
Sbjct: 119  SDGNQASPFELHLANRLDRDTSGIMVITKSHKVAAALVKAFTNHMVHKTYVAFCIGSAPK 178

Query: 678  WETISIKSGHGRSKFGVWRVYSASDVGRKLPGGSVVRDMATKFEVLSISGQGSFKEPTKL 499
             E I+IKSGHGRSKFG WRVY+A DVGRKLPGGS+VRDM T FEVLSI+GQ S+KEP++ 
Sbjct: 179  SERITIKSGHGRSKFGAWRVYAAGDVGRKLPGGSIVRDMGTTFEVLSINGQQSYKEPSES 238

Query: 498  RPNGEEFLVVEDPSV-KGDDENDEILVRAYPRSGRTHQIRLHCQYLGISIRGDVKYEGVY 322
              + E  ++VE+ +V   D + DEILVRA+PRSGRTHQIRLHCQYLGI IRGDVKYEGVY
Sbjct: 239  VKDEETSVIVEEKAVIDVDAQKDEILVRAFPRSGRTHQIRLHCQYLGIPIRGDVKYEGVY 298

Query: 321  EWRGRTYDGHALHAESLSFDHPITGLQVEFQAPLPQWASQAFQPASN 181
            EW+GR YD H LHAESLSF HP+TG  V  QAPLP WASQA QP ++
Sbjct: 299  EWKGRRYDAHELHAESLSFQHPVTGFPVMIQAPLPLWASQALQPLTD 345


>ref|XP_006472187.1| PREDICTED: RNA pseudouridine synthase 1-like [Citrus sinensis]
          Length = 324

 Score =  431 bits (1107), Expect = e-118
 Identities = 217/313 (69%), Positives = 254/313 (81%), Gaps = 10/313 (3%)
 Frame = -3

Query: 1092 NDPKTL-NYPKPLSPPLPAISKQIELNRANSASLKSNLFSLSETDIIFEDEWLIVVNKPE 916
            N P+T  NYP PLSPPLPAISK IEL RA SAS KS+L+ LS +D+++EDEWL+ VNKP+
Sbjct: 11   NAPQTQQNYPTPLSPPLPAISKDIELTRAMSASSKSSLYKLSRSDVLYEDEWLVAVNKPQ 70

Query: 915  GVYCESVLSSIPLFLT-DSMRPRF-------QTDPLELHMANRLDRDTSGLMVITKSHKI 760
            GVYCESVL+S+P  L  DS   +        + + LELH+ANRLDRDTSG+MVITKSHK+
Sbjct: 71   GVYCESVLASVPCLLAGDSAESKSGRLSEGTKLNLLELHLANRLDRDTSGVMVITKSHKV 130

Query: 759  AGKLVKAFTDHKVTKTYIALCIGQAPKWETISIKSGHGRSKFGVWRVYSASDVGRKLPGG 580
            A KLVKAFTDHKV+KTYIALCIG APKW+ I+I SGHGRSKFG WRVY+ASDVGR LPGG
Sbjct: 131  ASKLVKAFTDHKVSKTYIALCIGPAPKWKRITIISGHGRSKFGAWRVYAASDVGRVLPGG 190

Query: 579  SVVRDMATKFEVLSISGQGSFKEPTKLRPNGEEFLVVEDPSV-KGDDENDEILVRAYPRS 403
            SVVRDM T FEVLS++G+GSFKEP++L+ + E  +VVE  +V   D + +EILVR +PRS
Sbjct: 191  SVVRDMVTSFEVLSVNGEGSFKEPSELQEDEENNIVVEKKAVLDADAKKNEILVRVFPRS 250

Query: 402  GRTHQIRLHCQYLGISIRGDVKYEGVYEWRGRTYDGHALHAESLSFDHPITGLQVEFQAP 223
            GRTHQIRLHCQYLGISIRGDVKYEGVYEW G+ YDGH LHAESLS +HPITG  V  QAP
Sbjct: 251  GRTHQIRLHCQYLGISIRGDVKYEGVYEWNGKRYDGHELHAESLSLEHPITGCPVMVQAP 310

Query: 222  LPQWASQAFQPAS 184
            LP WA+QA Q +S
Sbjct: 311  LPLWATQAPQSSS 323


>ref|XP_002512503.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
            gi|223548464|gb|EEF49955.1| ribosomal pseudouridine
            synthase, putative [Ricinus communis]
          Length = 321

 Score =  431 bits (1107), Expect = e-118
 Identities = 214/308 (69%), Positives = 252/308 (81%), Gaps = 7/308 (2%)
 Frame = -3

Query: 1092 NDPKTL-NYPKPLSPPLPAISKQIELNRANSASLKSNLFSLSETDIIFEDEWLIVVNKPE 916
            NDP TL NYP PLSPPLP+ISKQIEL RA SAS +S+LF+LS +D+++ED+WLI VNKP+
Sbjct: 14   NDPLTLQNYPTPLSPPLPSISKQIELARALSASSRSSLFTLSRSDVLYEDQWLIAVNKPQ 73

Query: 915  GVYCESVLSSIPLFLTDSMR-----PRFQTDPLELHMANRLDRDTSGLMVITKSHKIAGK 751
            GVYCE+VL S+P  L  S          + +P E H+ANRLDRDTSG+MVITKSHK+A K
Sbjct: 74   GVYCETVLESVPRVLAASAELTDPSEGAEGNPHEFHLANRLDRDTSGVMVITKSHKVASK 133

Query: 750  LVKAFTDHKVTKTYIALCIGQAPKWETISIKSGHGRSKFGVWRVYSASDVGRKLPGGSVV 571
            LVKAFTDHK+ KTYIALCIG APKWE I+IKSGHGRSKFGVWRVY+ASDVG+ LPGGS V
Sbjct: 134  LVKAFTDHKIKKTYIALCIGLAPKWEKITIKSGHGRSKFGVWRVYAASDVGQTLPGGSTV 193

Query: 570  RDMATKFEVLSISGQGSFKEPTKLRPNGEEFLVVEDPSVKGDD-ENDEILVRAYPRSGRT 394
            +DM T FE+LS++GQGSFKE ++   + E  LVVE+ + K  D +  EILVRA+P+SGRT
Sbjct: 194  KDMETSFELLSVNGQGSFKELSEFEKD-ENILVVEEKAAKNADVKKVEILVRAFPQSGRT 252

Query: 393  HQIRLHCQYLGISIRGDVKYEGVYEWRGRTYDGHALHAESLSFDHPITGLQVEFQAPLPQ 214
            HQIRLHCQYLGISIRGDVKYEGVYEW GRTYDGH LHAE+LSF+HP+TG+ V  +APLP 
Sbjct: 253  HQIRLHCQYLGISIRGDVKYEGVYEWEGRTYDGHELHAETLSFEHPVTGVPVMLRAPLPS 312

Query: 213  WASQAFQP 190
            WA QA QP
Sbjct: 313  WAIQASQP 320


>ref|XP_004304865.1| PREDICTED: RNA pseudourine synthase 1-like [Fragaria vesca subsp.
            vesca]
          Length = 347

 Score =  430 bits (1106), Expect = e-118
 Identities = 207/296 (69%), Positives = 245/296 (82%), Gaps = 2/296 (0%)
 Frame = -3

Query: 1074 NYPKPLSPPLPAISKQIELNRANSASLKSNLFSLSETDIIFEDEWLIVVNKPEGVYCESV 895
            NYP PLSPPLP ISK +EL RA SAS KS+LF+LS  D+++ED+WLIVVNKP+G+YCE+V
Sbjct: 51   NYPVPLSPPLPLISKNMELARAMSASSKSSLFTLSRNDVVYEDQWLIVVNKPQGIYCETV 110

Query: 894  LSSIPLFLTDSMRPRFQTDPLELHMANRLDRDTSGLMVITKSHKIAGKLVKAFTDHKVTK 715
            L S+P  L +S     +    E+H+ANRLDRDTSG+M+ITKSHK+A KLVKAFTDHKV+K
Sbjct: 111  LESVPKLLAES---GLEGKAPEIHLANRLDRDTSGVMIITKSHKVAAKLVKAFTDHKVSK 167

Query: 714  TYIALCIGQAPKWETISIKSGHGRSKFGVWRVYSASDVGRKLPGGSVVRDMATKFEVLSI 535
            TYIA CIG APKWE I++KSGHGRSKFG WRVY+ASDVGR LPGGSVVRDM T FE+LSI
Sbjct: 168  TYIACCIGSAPKWERITVKSGHGRSKFGAWRVYAASDVGRPLPGGSVVRDMETSFEILSI 227

Query: 534  SGQGSFKEPTKLRPNGEEFLVVEDPSV--KGDDENDEILVRAYPRSGRTHQIRLHCQYLG 361
            +GQG F+EP++ R + ++ LVVE+ +V   GD + DEILV A PRSGRTHQIRLHCQYLG
Sbjct: 228  NGQGCFREPSEFRIDDDKILVVEEKAVIIDGDAKKDEILVIARPRSGRTHQIRLHCQYLG 287

Query: 360  ISIRGDVKYEGVYEWRGRTYDGHALHAESLSFDHPITGLQVEFQAPLPQWASQAFQ 193
            ISIRGDVKYEGVYEW+G TY GH LHAES+S DHPITGL + F+APLP WA+Q  Q
Sbjct: 288  ISIRGDVKYEGVYEWKGTTYGGHELHAESMSLDHPITGLPILFRAPLPSWANQLIQ 343


>ref|XP_007031141.1| Pseudouridine synthase family protein isoform 2 [Theobroma cacao]
            gi|508719746|gb|EOY11643.1| Pseudouridine synthase family
            protein isoform 2 [Theobroma cacao]
          Length = 313

 Score =  429 bits (1102), Expect = e-117
 Identities = 211/304 (69%), Positives = 246/304 (80%), Gaps = 6/304 (1%)
 Frame = -3

Query: 1074 NYPKPLSPPLPAISKQIELNRANSASLKSNLFSLSETDIIFEDEWLIVVNKPEGVYCESV 895
            NYP PLSPPLP+ISK IEL RA +AS KS+LF LS +DI++EDEWLI VNKP+G+YC+SV
Sbjct: 10   NYPTPLSPPLPSISKDIELARAMTASSKSSLFELSRSDILYEDEWLIAVNKPQGIYCDSV 69

Query: 894  LSSIPLFLTDS-----MRPRFQTDPLELHMANRLDRDTSGLMVITKSHKIAGKLVKAFTD 730
            L+SIP FL+DS     +    Q  P ELH+ANRLDRDTSG+MVITKSHK+A  LVKAFT+
Sbjct: 70   LASIPRFLSDSTVSDRLSDGNQASPFELHLANRLDRDTSGIMVITKSHKVAAALVKAFTN 129

Query: 729  HKVTKTYIALCIGQAPKWETISIKSGHGRSKFGVWRVYSASDVGRKLPGGSVVRDMATKF 550
            H V KTY+A CIG APK E I+IKSGHGRSKFG WRVY+A DVGRKLPGGS+VRDM T F
Sbjct: 130  HMVHKTYVAFCIGSAPKSERITIKSGHGRSKFGAWRVYAAGDVGRKLPGGSIVRDMGTTF 189

Query: 549  EVLSISGQGSFKEPTKLRPNGEEFLVVEDPSV-KGDDENDEILVRAYPRSGRTHQIRLHC 373
            EVLSI+GQ S+KEP++   + E  ++VE+ +V   D + DEILVRA+PRSGRTHQIRLHC
Sbjct: 190  EVLSINGQQSYKEPSESVKDEETSVIVEEKAVIDVDAQKDEILVRAFPRSGRTHQIRLHC 249

Query: 372  QYLGISIRGDVKYEGVYEWRGRTYDGHALHAESLSFDHPITGLQVEFQAPLPQWASQAFQ 193
            QYLGI IRGDVKYEGVYEW+GR YD H LHAESLSF HP+TG  V  QAPLP WASQA Q
Sbjct: 250  QYLGIPIRGDVKYEGVYEWKGRRYDAHELHAESLSFQHPVTGFPVMIQAPLPLWASQALQ 309

Query: 192  PASN 181
            P ++
Sbjct: 310  PLTD 313


>gb|EXC51319.1| RNA pseudourine synthase 1 [Morus notabilis]
          Length = 319

 Score =  414 bits (1064), Expect = e-113
 Identities = 200/298 (67%), Positives = 237/298 (79%), Gaps = 4/298 (1%)
 Frame = -3

Query: 1074 NYPKPLSPPLPAISKQIELNRANSASLKSNLFSLSETDIIFEDEWLIVVNKPEGVYCESV 895
            NYP PLSPP P +SK +EL+RA SAS KS+LFS+S  D +FEDE L+ VNKP+G+YCESV
Sbjct: 21   NYPVPLSPPPPPVSKDVELSRAMSASSKSSLFSISRNDFVFEDECLVAVNKPQGIYCESV 80

Query: 894  LSSIPLFLTDSMRP---RFQTDPLELHMANRLDRDTSGLMVITKSHKIAGKLVKAFTDHK 724
              S+   L+DS  P     +  P ELH+ANRLDRDTSGLM+ITKSHK+A KLVKAFT HK
Sbjct: 81   FDSVRKVLSDSSEPGQLETEASPPELHLANRLDRDTSGLMLITKSHKVASKLVKAFTTHK 140

Query: 723  VTKTYIALCIGQAPKWETISIKSGHGRSKFGVWRVYSASDVGRKLPGGSVVRDMATKFEV 544
            V+KTYIA C+G APKWE I+IKSGHGRSKFG WRVY+ASDVGR LPGGSVVRDM T FEV
Sbjct: 141  VSKTYIAFCVGSAPKWENITIKSGHGRSKFGAWRVYAASDVGRTLPGGSVVRDMETSFEV 200

Query: 543  LSISGQGSFKEPTKLRPNGEEFLVVEDPS-VKGDDENDEILVRAYPRSGRTHQIRLHCQY 367
            LS++GQ   KEP++ R +G   L+VE+ + +  D + DEILVRA P+SGR+HQIRLHCQY
Sbjct: 201  LSVNGQRVSKEPSEFRKDGNNVLIVEEKALIDRDGKKDEILVRARPKSGRSHQIRLHCQY 260

Query: 366  LGISIRGDVKYEGVYEWRGRTYDGHALHAESLSFDHPITGLQVEFQAPLPQWASQAFQ 193
            LGIS+RGDVKYEGV +W+G+TY+GH LHAESLSF+HPIT L V    PLP WASQ  Q
Sbjct: 261  LGISLRGDVKYEGVSQWKGKTYNGHELHAESLSFEHPITSLPVVLSTPLPMWASQVTQ 318


>gb|EXB98832.1| RNA pseudourine synthase 1 [Morus notabilis]
          Length = 319

 Score =  414 bits (1063), Expect = e-113
 Identities = 200/298 (67%), Positives = 237/298 (79%), Gaps = 4/298 (1%)
 Frame = -3

Query: 1074 NYPKPLSPPLPAISKQIELNRANSASLKSNLFSLSETDIIFEDEWLIVVNKPEGVYCESV 895
            NYP PLSPP P +SK +EL+RA SAS KS+LFS+S  D +FEDE L+ VNKP+G+YCESV
Sbjct: 21   NYPVPLSPPPPPVSKDVELSRAMSASSKSSLFSISRNDFVFEDECLVAVNKPQGIYCESV 80

Query: 894  LSSIPLFLTDSMRP---RFQTDPLELHMANRLDRDTSGLMVITKSHKIAGKLVKAFTDHK 724
              S+   L+DS  P     +  P ELH+ANRLDRDTSGLM+ITKSHK+A KLVKAFT HK
Sbjct: 81   FDSVRKVLSDSSEPGQLETEASPPELHLANRLDRDTSGLMLITKSHKVASKLVKAFTTHK 140

Query: 723  VTKTYIALCIGQAPKWETISIKSGHGRSKFGVWRVYSASDVGRKLPGGSVVRDMATKFEV 544
            V+KTYIA C+G APKWE I+IKSGHGRSKFG WRVY+ASDVGR LPGGSVVRDM T FEV
Sbjct: 141  VSKTYIAFCVGSAPKWENITIKSGHGRSKFGAWRVYAASDVGRTLPGGSVVRDMETSFEV 200

Query: 543  LSISGQGSFKEPTKLRPNGEEFLVVEDPS-VKGDDENDEILVRAYPRSGRTHQIRLHCQY 367
            LS++GQ   KEP++ R +G   L+VE+ + +  D + DEILVRA P+SGR+HQIRLHCQY
Sbjct: 201  LSVNGQRVSKEPSEFRKDGNNVLIVEEKALIDRDGKKDEILVRARPKSGRSHQIRLHCQY 260

Query: 366  LGISIRGDVKYEGVYEWRGRTYDGHALHAESLSFDHPITGLQVEFQAPLPQWASQAFQ 193
            LGIS+RGDVKYEGV +W+G+TY+GH LHAESLSF+HPIT L V    PLP WASQ  Q
Sbjct: 261  LGISLRGDVKYEGVSQWKGKTYNGHELHAESLSFEHPITSLLVVLSTPLPMWASQVTQ 318


>ref|XP_004144814.1| PREDICTED: RNA pseudourine synthase 1-like [Cucumis sativus]
          Length = 366

 Score =  413 bits (1062), Expect = e-113
 Identities = 212/348 (60%), Positives = 256/348 (73%), Gaps = 2/348 (0%)
 Frame = -3

Query: 1227 LAPHLLLPPTIFSKSSTTIRFLCNSTCLPIMADKTHFDSAKRDDLNDPKTL-NYPKPLSP 1051
            L P+  + P  F++   T  F C      +    T  DS++    N P T  NYP PLSP
Sbjct: 7    LHPNFSISPKTFTEFPFTKSF-CFHRFKSVSNSMT--DSSEPVTGNCPSTAENYPVPLSP 63

Query: 1050 PLPAISKQIELNRANSASLKSNLFSLSETDIIFEDEWLIVVNKPEGVYCESVLSSIPLFL 871
            PLPAISK +EL RA  AS KS+L++LS  D+I+EDEWLI VNKP+G+YCE+VL+++P  L
Sbjct: 64   PLPAISKNLELARAMVASSKSSLYALSANDVIYEDEWLIAVNKPQGIYCENVLAAVPRLL 123

Query: 870  TDSMRPRFQTDPLELHMANRLDRDTSGLMVITKSHKIAGKLVKAFTDHKVTKTYIALCIG 691
             DS     +T   ELH+ANRLDRDTSG+MVITKSHK+A KLVKAFTDH V+K+YIA C+G
Sbjct: 124  GDSANAGIKTSLPELHLANRLDRDTSGVMVITKSHKVASKLVKAFTDHTVSKSYIAFCVG 183

Query: 690  QAPKWETISIKSGHGRSKFGVWRVYSASDVGRKLPGGSVVRDMATKFEVLSISGQGSFKE 511
             +PKW+ I++KSGHGRSKFGVWRVY+A+DVGR LPGGSVVRDM T FEVLS++G+ + +E
Sbjct: 184  TSPKWKKINVKSGHGRSKFGVWRVYAAADVGRSLPGGSVVRDMETYFEVLSVNGKNTMEE 243

Query: 510  PTKLRPNGEEFLVVEDPS-VKGDDENDEILVRAYPRSGRTHQIRLHCQYLGISIRGDVKY 334
              K R   EE +VV   S V  D   DEIL+RA PRSGRTHQIRLHCQYLGI IRGDVKY
Sbjct: 244  LQKFRRGEEETIVVHTKSLVDIDSHKDEILIRARPRSGRTHQIRLHCQYLGIPIRGDVKY 303

Query: 333  EGVYEWRGRTYDGHALHAESLSFDHPITGLQVEFQAPLPQWASQAFQP 190
            EGV EW  + YD H LHAESL F HP+TG+ ++ QAPLP WASQA QP
Sbjct: 304  EGVTEWNEKIYDSHELHAESLYFVHPVTGIPLKLQAPLPSWASQALQP 351


>ref|XP_004158751.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudourine synthase 1-like
            [Cucumis sativus]
          Length = 366

 Score =  412 bits (1060), Expect = e-112
 Identities = 212/348 (60%), Positives = 255/348 (73%), Gaps = 2/348 (0%)
 Frame = -3

Query: 1227 LAPHLLLPPTIFSKSSTTIRFLCNSTCLPIMADKTHFDSAKRDDLNDPKTL-NYPKPLSP 1051
            L P+  + P  F++   T  F C      +    T  DS++    N P T  NYP PLSP
Sbjct: 7    LHPNFSISPKTFTEFPFTKSF-CFHRFKSVSNSMT--DSSEPVTGNCPSTAENYPVPLSP 63

Query: 1050 PLPAISKQIELNRANSASLKSNLFSLSETDIIFEDEWLIVVNKPEGVYCESVLSSIPLFL 871
            PLPAISK +EL RA  AS KS+L++LS  D+I+EDEWLI VNKP+G+YCE+VL+++P  L
Sbjct: 64   PLPAISKNLELARAMVASSKSSLYALSANDVIYEDEWLIAVNKPQGIYCENVLAAVPRLL 123

Query: 870  TDSMRPRFQTDPLELHMANRLDRDTSGLMVITKSHKIAGKLVKAFTDHKVTKTYIALCIG 691
             DS     +T   ELH+ANRLDRDTSG+MVITKSHK+A KLVKAFTDH V+K+YIA C+G
Sbjct: 124  GDSANAGIKTSLPELHLANRLDRDTSGVMVITKSHKVASKLVKAFTDHTVSKSYIAFCVG 183

Query: 690  QAPKWETISIKSGHGRSKFGVWRVYSASDVGRKLPGGSVVRDMATKFEVLSISGQGSFKE 511
             +PKW  I++KSGHGRSKFGVWRVY+A+DVGR LPGGSVVRDM T FEVLS++G+ + +E
Sbjct: 184  TSPKWXKINVKSGHGRSKFGVWRVYAAADVGRSLPGGSVVRDMETYFEVLSVNGKNTMEE 243

Query: 510  PTKLRPNGEEFLVVEDPS-VKGDDENDEILVRAYPRSGRTHQIRLHCQYLGISIRGDVKY 334
              K R   EE +VV   S V  D   DEIL+RA PRSGRTHQIRLHCQYLGI IRGDVKY
Sbjct: 244  LQKFRRGEEETIVVHTKSLVDIDSHKDEILIRARPRSGRTHQIRLHCQYLGIPIRGDVKY 303

Query: 333  EGVYEWRGRTYDGHALHAESLSFDHPITGLQVEFQAPLPQWASQAFQP 190
            EGV EW  + YD H LHAESL F HP+TG+ ++ QAPLP WASQA QP
Sbjct: 304  EGVTEWNEKIYDSHELHAESLYFVHPVTGIPLKLQAPLPSWASQALQP 351


>ref|XP_002278016.2| PREDICTED: RNA pseudourine synthase 1-like [Vitis vinifera]
          Length = 348

 Score =  410 bits (1053), Expect = e-112
 Identities = 200/297 (67%), Positives = 238/297 (80%), Gaps = 1/297 (0%)
 Frame = -3

Query: 1074 NYPKPLSPPLPAISKQIELNRANSASLKSNLFSLSETDIIFEDEWLIVVNKPEGVYCESV 895
            NYPKP+SPPLPAISK IE +RA SAS +S+LFSL  +DI+FED+WL+ VNKP+GVYCE++
Sbjct: 53   NYPKPISPPLPAISKHIEQSRAMSASSRSSLFSLCRSDILFEDQWLMAVNKPQGVYCETI 112

Query: 894  LSSIPLFLTDSMRPRFQTDPLELHMANRLDRDTSGLMVITKSHKIAGKLVKAFTDHKVTK 715
            L S+   L DS           LH+ANRLDRDTSG+MVITKSH++A KL+KAF+D KVTK
Sbjct: 113  LLSVSRMLDDSDG---HDSCRSLHLANRLDRDTSGVMVITKSHQVAAKLMKAFSDRKVTK 169

Query: 714  TYIALCIGQAPKWETISIKSGHGRSKFGVWRVYSASDVGRKLPGGSVVRDMATKFEVLSI 535
            TY+ALCIG AP WE I+IKSGHGRSKFG WRVY+ASDVGR LP    ++DM T FEVLS+
Sbjct: 170  TYLALCIGAAPTWEKITIKSGHGRSKFGAWRVYAASDVGRALPNAPAIKDMVTSFEVLSV 229

Query: 534  SGQGSFKEPTKLRPNGEEFLVVEDPSV-KGDDENDEILVRAYPRSGRTHQIRLHCQYLGI 358
            +GQG+ KE  + R   E  LVVE+ SV   +   DEILVRA+PRSGRTHQIRLHCQYLGI
Sbjct: 230  NGQGNVKELPESRKADETVLVVEERSVIDSNARQDEILVRAFPRSGRTHQIRLHCQYLGI 289

Query: 357  SIRGDVKYEGVYEWRGRTYDGHALHAESLSFDHPITGLQVEFQAPLPQWASQAFQPA 187
            SIRGDVKYEGV+EW+G+ YDGH LHAESLSF+HP+TG+ V F+APLP WA QA QP+
Sbjct: 290  SIRGDVKYEGVHEWKGKIYDGHELHAESLSFEHPVTGVDVAFRAPLPSWAVQALQPS 346


>ref|XP_006344754.1| PREDICTED: RNA pseudouridine synthase 1-like [Solanum tuberosum]
          Length = 332

 Score =  407 bits (1046), Expect = e-111
 Identities = 212/345 (61%), Positives = 254/345 (73%), Gaps = 5/345 (1%)
 Frame = -3

Query: 1221 PHLLLPPTIFSKSSTTI----RFLCNSTCLPIMADKTHFDSAKRDDLNDPKTLNYPKPLS 1054
            P   +P   F  SST I    RF+        MA +++FDS          T +YP PLS
Sbjct: 6    PLFQIPLINFFASSTRISRHRRFI-------FMASQSYFDSPSA------ATTDYPVPLS 52

Query: 1053 PPLPAISKQIELNRANSASLKSNLFSLSETDIIFEDEWLIVVNKPEGVYCESVLSSIPLF 874
            PPLPA+SK IE NRA +AS KS LFSLS + +IFEDEW+I VNKP+G+YCESVLSS+P  
Sbjct: 53   PPLPALSKDIEPNRALTASSKSALFSLSRSHVIFEDEWIIAVNKPQGIYCESVLSSLPDL 112

Query: 873  LTDSMRPRFQTDPLELHMANRLDRDTSGLMVITKSHKIAGKLVKAFTDHKVTKTYIALCI 694
            L D+       +  ELH+ANRLDRDTSG+M+ITK HK+A K VKAFTDHKV KTY+A C+
Sbjct: 113  LNDT-----GANVSELHLANRLDRDTSGVMLITKLHKVAAKFVKAFTDHKVRKTYLAYCV 167

Query: 693  GQAPKWETISIKSGHGRSKFGVWRVYSASDVGRKLPGGSVVRDMATKFEVLSISGQGSFK 514
            G APKWE I++KSGHGRSK+G WRVY+ASD GRKLPGGS+V+DM T FEVLS++G G FK
Sbjct: 168  GLAPKWEKITVKSGHGRSKYGAWRVYAASDAGRKLPGGSLVKDMETSFEVLSVNGLGCFK 227

Query: 513  EPTKLRPNGEEFLVVEDPSVKGDD-ENDEILVRAYPRSGRTHQIRLHCQYLGISIRGDVK 337
            E +    + E+ ++V++ SV G D + DEILVRA PRSGRTHQIRLHCQYLGI IRGDV+
Sbjct: 228  EVSDFHKD-EDVVIVQEKSVIGCDLKKDEILVRASPRSGRTHQIRLHCQYLGIPIRGDVR 286

Query: 336  YEGVYEWRGRTYDGHALHAESLSFDHPITGLQVEFQAPLPQWASQ 202
            YEGVYEW+G  YD H LHAESLSF+HPITG  +  QAPLP WA Q
Sbjct: 287  YEGVYEWKGSRYDSHELHAESLSFEHPITGKPMLLQAPLPSWAIQ 331


>ref|XP_004495663.1| PREDICTED: RNA pseudourine synthase 1-like [Cicer arietinum]
          Length = 313

 Score =  407 bits (1045), Expect = e-111
 Identities = 202/300 (67%), Positives = 235/300 (78%), Gaps = 6/300 (2%)
 Frame = -3

Query: 1074 NYPKPLSPPLPAISKQIELNRANSASLKSNLFSLSETDIIFEDEWLIVVNKPEGVYCESV 895
            NYP PLSP LPAISK+IELNRA  AS  S LFSLS+  II+EDEWL+VVNKP G+YC+SV
Sbjct: 22   NYPVPLSPQLPAISKEIELNRAKIASTNSQLFSLSKIHIIYEDEWLLVVNKPNGIYCDSV 81

Query: 894  LSSIPLFLTDSMRPRFQTDPLELHMANRLDRDTSGLMVITKSHKIAGKLVKAFTDHKVTK 715
            L+S+            QT P ELH+ANRLDRDTSG+MVITKSHK+A KLVKAFTDHKV K
Sbjct: 82   LTSLQ---------SQQTLPSELHLANRLDRDTSGIMVITKSHKVASKLVKAFTDHKVQK 132

Query: 714  TYIALCIGQAPKWETISIKSGHGRSKFGVWRVYSASDVGRKLPGGSVVRDMATKFEVLSI 535
            TYIA C G  P WETI+++SGHGRSKFG WRVY+ SD GR LPGGSVVR M T FEVLS+
Sbjct: 133  TYIARCTGSIPNWETITVRSGHGRSKFGAWRVYAFSDSGRVLPGGSVVRSMETSFEVLSV 192

Query: 534  SGQGSFKEPTKLRPNGEEFLVVEDPSVK---GDDEND---EILVRAYPRSGRTHQIRLHC 373
            +G G+F++ ++    G   LVVE+ SVK   GDDEN+   EI+VRAYPRSGRTHQIRLHC
Sbjct: 193  NGNGNFRDVSESEFEGSSSLVVEEKSVKLDGGDDENENHHEIVVRAYPRSGRTHQIRLHC 252

Query: 372  QYLGISIRGDVKYEGVYEWRGRTYDGHALHAESLSFDHPITGLQVEFQAPLPQWASQAFQ 193
            QYLGISI GDVKYEGVYEW+G  + GH LHAE+LSFDHP+TG+ +  +APLPQW +Q  Q
Sbjct: 253  QYLGISIIGDVKYEGVYEWKGEIHHGHHLHAETLSFDHPVTGIHLMLRAPLPQWVNQVLQ 312


>ref|XP_004230301.1| PREDICTED: RNA pseudourine synthase 1-like [Solanum lycopersicum]
          Length = 308

 Score =  407 bits (1045), Expect = e-111
 Identities = 203/313 (64%), Positives = 243/313 (77%), Gaps = 1/313 (0%)
 Frame = -3

Query: 1137 MADKTHFDSAKRDDLNDPKTLNYPKPLSPPLPAISKQIELNRANSASLKSNLFSLSETDI 958
            MA +++FDS          T +YP PLSPPLP +SK IE NRA +AS KS LFSLS + +
Sbjct: 1    MASQSYFDSPS------VATTDYPVPLSPPLPTLSKDIEPNRALTASSKSALFSLSRSHV 54

Query: 957  IFEDEWLIVVNKPEGVYCESVLSSIPLFLTDSMRPRFQTDPLELHMANRLDRDTSGLMVI 778
            IFEDEW+I VNKP+G+YCESVLSS+P  L D+       +  ELH+ANRLDRDTSG+M+I
Sbjct: 55   IFEDEWIIAVNKPQGIYCESVLSSLPDLLNDT-----GANVSELHLANRLDRDTSGVMLI 109

Query: 777  TKSHKIAGKLVKAFTDHKVTKTYIALCIGQAPKWETISIKSGHGRSKFGVWRVYSASDVG 598
            TK HK+A K VKAFTDHKV KTY+A C+G APKWE I++KSGHGRSK+G WRVY+ASD G
Sbjct: 110  TKLHKVAAKFVKAFTDHKVRKTYLAYCVGLAPKWEKITVKSGHGRSKYGAWRVYAASDAG 169

Query: 597  RKLPGGSVVRDMATKFEVLSISGQGSFKEPTKLRPNGEEFLVVEDPSVKGDD-ENDEILV 421
            RKLPGGS+V+DM T FEVLS++G G FKE + L  + E+ ++V++ SV G D + DEILV
Sbjct: 170  RKLPGGSLVKDMETSFEVLSVNGLGCFKEVSDLHKD-EDIVIVQEKSVIGCDLKKDEILV 228

Query: 420  RAYPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWRGRTYDGHALHAESLSFDHPITGLQ 241
            RA PRSGRTHQIRLHCQYLGI IRGDV+YEGVYEW+G  YD H LHAESLSF+HPITG  
Sbjct: 229  RASPRSGRTHQIRLHCQYLGIPIRGDVRYEGVYEWKGNIYDSHELHAESLSFEHPITGKS 288

Query: 240  VEFQAPLPQWASQ 202
            +  QAPLP WA Q
Sbjct: 289  MLLQAPLPSWAIQ 301


>ref|XP_003591214.1| Lon protease-like protein [Medicago truncatula]
            gi|355480262|gb|AES61465.1| Lon protease-like protein
            [Medicago truncatula]
          Length = 1262

 Score =  402 bits (1033), Expect = e-109
 Identities = 203/301 (67%), Positives = 240/301 (79%), Gaps = 3/301 (0%)
 Frame = -3

Query: 1092 NDPKTL-NYPKPLSPPLPAISKQIELNRANSASLKSNLFSLSETDIIFEDEWLIVVNKPE 916
            N P  L NYP PLSP LPAISKQIELNRA  A+  S LFSL++T II+EDE+L+ VNKP+
Sbjct: 10   NTPTVLSNYPIPLSPQLPAISKQIELNRATIATSNSELFSLAQTHIIYEDEYLLAVNKPQ 69

Query: 915  GVYCESVLSSIPLFLTDSMRPRFQTDPLELHMANRLDRDTSGLMVITKSHKIAGKLVKAF 736
            G+YC++VL+S+    T            ELH+ANRLDRDTSG+M+ITKSHKIA KLVKAF
Sbjct: 70   GIYCDNVLTSLQSQSTVGS---------ELHLANRLDRDTSGVMLITKSHKIASKLVKAF 120

Query: 735  TDHKVTKTYIALCIGQAPKWETISIKSGHGRSKFGVWRVYSASDVGRKLPGGSVVRDMAT 556
            TD +V KTYIA C G+ P W+TI++KSGHGRSKFG WRVY  SD GR LPGGSVVR+M T
Sbjct: 121  TDREVKKTYIAFCTGRVPDWKTITVKSGHGRSKFGAWRVYGFSDSGRGLPGGSVVREMET 180

Query: 555  KFEVLSISGQGSFKEPTKLRPNGEEFLVVEDPSVK--GDDENDEILVRAYPRSGRTHQIR 382
             FE LS++G+G F+E T+L       +VVE+ +VK  GDDEN EI+VRAYPRSGRTHQIR
Sbjct: 181  SFEFLSVNGKGGFREVTELGFEEGNVVVVEEKAVKMEGDDEN-EIVVRAYPRSGRTHQIR 239

Query: 381  LHCQYLGISIRGDVKYEGVYEWRGRTYDGHALHAESLSFDHPITGLQVEFQAPLPQWASQ 202
            LHCQYLGISI GDVKYEGVYEW+GR YDGH LHAE+LSFDHP+TG++V F+APLPQWA+Q
Sbjct: 240  LHCQYLGISIIGDVKYEGVYEWKGRVYDGHHLHAETLSFDHPVTGVRVMFRAPLPQWANQ 299

Query: 201  A 199
            A
Sbjct: 300  A 300



 Score =  125 bits (314), Expect = 4e-26
 Identities = 98/278 (35%), Positives = 122/278 (43%), Gaps = 3/278 (1%)
 Frame = -3

Query: 990  SNLFSLSETDIIFEDEWLIVVNKPEGVYCESVLSSIPLFLTDSMRPRFQTDPLELHMANR 811
            SN F  SET  IF    LI +        ES++S  PL    S  PR             
Sbjct: 893  SNGFRSSETRQIFHSNILIKL-----AVVESLVSG-PLVFLQSTIPR------------- 933

Query: 810  LDRDTSGLMVITKSHKIAGKLVKAFTDHKVTKTYIALCIGQAPKWETISIKSGHGRSKFG 631
                 + +M+I KSHK+A KLVKAFTDHKV KTYI+LC GQ P WETI+++S +GRSKFG
Sbjct: 934  ----QTYVMLIIKSHKVASKLVKAFTDHKVQKTYISLCTGQTPNWETITVRSCYGRSKFG 989

Query: 630  VWRVY---SASDVGRKLPGGSVVRDMATKFEVLSISGQGSFKEPTKLRPNGEEFLVVEDP 460
              RVY     +++G ++  G VV + A K E +                           
Sbjct: 990  TRRVYVFLEVAELGFEVSDGVVVEEKAVKMEGI--------------------------- 1022

Query: 459  SVKGDDENDEILVRAYPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWRGRTYDGHALHA 280
                                     + HCQYLGISI GDVKYEG                
Sbjct: 1023 -------------------------QFHCQYLGISIIGDVKYEG---------------- 1041

Query: 279  ESLSFDHPITGLQVEFQAPLPQWASQAFQPASNGERDT 166
                FDH +TG++V   A LPQW +Q     SN   DT
Sbjct: 1042 ----FDHLVTGVRVMLCASLPQWVNQVL---SNMNIDT 1072



 Score = 59.3 bits (142), Expect = 4e-06
 Identities = 27/34 (79%), Positives = 29/34 (85%)
 Frame = -3

Query: 360 ISIRGDVKYEGVYEWRGRTYDGHALHAESLSFDH 259
           ISI  DVKYEGVYE +GR YDGH LHAE+LSFDH
Sbjct: 796 ISIFRDVKYEGVYECKGRVYDGHHLHAETLSFDH 829


>gb|EYU37245.1| hypothetical protein MIMGU_mgv1a010081mg [Mimulus guttatus]
          Length = 323

 Score =  390 bits (1002), Expect = e-106
 Identities = 197/328 (60%), Positives = 241/328 (73%), Gaps = 5/328 (1%)
 Frame = -3

Query: 1137 MADKTHFDSAKRDDLNDPKTL-NYPKPLSPPLPAISKQIELNRANSASLKSNLFSLSETD 961
            MA ++  +S      N P++L NYP PLSPP P ISK +ELNRA +AS KS+LFSLS  D
Sbjct: 1    MAAESRLNSPNTQPENAPQSLQNYPVPLSPPPPLISKNVELNRALTASSKSSLFSLSRKD 60

Query: 960  IIFEDEWLIVVNKPEGVYCESVLSSIPLFL-TDSMRPRFQTDPLELHMANRLDRDTSGLM 784
            ++FEDEWLI VNKP G+YCE++LSS+ + L TD ++ +      ELH++NRLDRDTSG++
Sbjct: 61   VLFEDEWLIAVNKPNGIYCETILSSVQILLNTDQVKLQ------ELHLSNRLDRDTSGVI 114

Query: 783  VITKSHKIAGKLVKAFTDHKVTKTYIALCIGQAPKWETISIKSGHGRSKFGVWRVYSASD 604
            +ITKSHK+A KLVKAFT+H V KTY+A C+G  PKW+ + IKSGHGRSK G WRVY+ SD
Sbjct: 115  LITKSHKVAAKLVKAFTNHMVKKTYLASCVGTFPKWKNMIIKSGHGRSKHGAWRVYAYSD 174

Query: 603  VGRKLPGGSVVRDMATKFEVLSISGQGSFKEPTKLRPNGEEFLVVEDPSVKG---DDEND 433
            VGR LPGGS VRDM T F+VLS++G+   +E        E+ +  E   V G    DE D
Sbjct: 175  VGRVLPGGSFVRDMETSFDVLSVNGKSCSQESDANHEEEEKIVAEEKSEVVGSCCSDERD 234

Query: 432  EILVRAYPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWRGRTYDGHALHAESLSFDHPI 253
            E++VRA+PRSGRTHQIRLHCQYLGI I GDVKYEGVYEW+ RTY+GH LHAE+LSF+HPI
Sbjct: 235  EVVVRAHPRSGRTHQIRLHCQYLGIPIIGDVKYEGVYEWKDRTYEGHELHAETLSFEHPI 294

Query: 252  TGLQVEFQAPLPQWASQAFQPASNGERD 169
            TG  V  QAPLP WASQA   A     D
Sbjct: 295  TGQSVFIQAPLPLWASQALAQAQLSSLD 322


>ref|XP_003555184.1| PREDICTED: RNA pseudouridine synthase 1-like [Glycine max]
          Length = 320

 Score =  386 bits (991), Expect = e-104
 Identities = 190/301 (63%), Positives = 234/301 (77%), Gaps = 4/301 (1%)
 Frame = -3

Query: 1080 TLNYPKPLSPPLPAISKQIELNRANSASLKSNLFSLSETDIIFEDEWLIVVNKPEGVYCE 901
            T NYP PLSPPLP ISKQ+EL+RA SA+  S+LFSLS  DI++ D+ LI VNK  G+YCE
Sbjct: 32   TENYPVPLSPPLPPISKQLELSRAMSAASNSSLFSLSPADILYHDDHLIAVNKHPGIYCE 91

Query: 900  SVLSSIPLFLTDSMRPRFQTDPLELHMANRLDRDTSGLMVITKSHKIAGKLVKAFTDHKV 721
            ++LSS+             +   +LH+ANRLDRDT+G++++TKSHK+A KLVKAFTDHKV
Sbjct: 92   TLLSSLA------------SQSHQLHLANRLDRDTTGVLLLTKSHKVAAKLVKAFTDHKV 139

Query: 720  TKTYIALCIGQAPKWETISIKSGHGRSKFGVWRVYSASDVGRKLPGGSVVRDMATKFEVL 541
             KTYIALC G  P WE ++++SGHGRSKFG WRVY+ASDVGR LPGGSVVR M T FE+L
Sbjct: 140  KKTYIALCTGPPPNWERVTLRSGHGRSKFGAWRVYAASDVGRALPGGSVVRSMETSFELL 199

Query: 540  SISGQGSFKEPTKL---RPNGEEFLVVEDPSVKGDDEND-EILVRAYPRSGRTHQIRLHC 373
            S++ +G+F+E +        GE  LVVE+ +VK D  N+ EI+VRAYPRSGRTHQIRLHC
Sbjct: 200  SVNRKGNFREVSDSEFGNVEGENVLVVEEKAVKEDGNNESEIVVRAYPRSGRTHQIRLHC 259

Query: 372  QYLGISIRGDVKYEGVYEWRGRTYDGHALHAESLSFDHPITGLQVEFQAPLPQWASQAFQ 193
            QYLGISI GDVKYEGVYEW+G T+  H LHAE+LSF+HP+TGL V+ +APLP WA+ AFQ
Sbjct: 260  QYLGISIVGDVKYEGVYEWKGTTHHAHHLHAETLSFEHPVTGLHVKLRAPLPPWATHAFQ 319

Query: 192  P 190
            P
Sbjct: 320  P 320


>ref|XP_006855276.1| hypothetical protein AMTR_s00057p00025150 [Amborella trichopoda]
            gi|548859042|gb|ERN16743.1| hypothetical protein
            AMTR_s00057p00025150 [Amborella trichopoda]
          Length = 326

 Score =  385 bits (988), Expect = e-104
 Identities = 189/299 (63%), Positives = 232/299 (77%), Gaps = 3/299 (1%)
 Frame = -3

Query: 1086 PKTLNYPKPLSPPLPAISKQIELNRANSASLKSNLFSLSETDIIFEDEWLIVVNKPEGVY 907
            P TL++P PL+   P ISKQ+EL+RA +AS KS  FS++++D+I+ED+WLI +NKP GVY
Sbjct: 25   PNTLDFPIPLTRHPPPISKQVELDRAMAASAKSG-FSITKSDVIYEDQWLIAINKPSGVY 83

Query: 906  CESVLSSIPLFLTDSMRPRFQTDPLELHMANRLDRDTSGLMVITKSHKIAGKLVKAFTDH 727
            C+ VL+SIP  L  S       +PLELH+ NRLDRDTSG+M+ITK HK+AGKLV+AFT+H
Sbjct: 84   CDHVLASIPRLLGVSPESSGAENPLELHLGNRLDRDTSGVMLITKLHKVAGKLVQAFTEH 143

Query: 726  KVTKTYIALCIGQAPKWETISIKSGHGRSKFGVWRVYSASDVGRKLPGGSVVRDMATKFE 547
            +V KTYIALCIG AP+WE I++KSGHGRSKFG WRVYSASD+GR LPGGSVVR+M T F+
Sbjct: 144  RVKKTYIALCIGLAPQWEEIALKSGHGRSKFGAWRVYSASDIGRTLPGGSVVREMVTSFK 203

Query: 546  VLSISGQGSFKEPTKLRPNGEEFLVVEDPSVK---GDDENDEILVRAYPRSGRTHQIRLH 376
            VLS++G  S  E         E L+V D   K     D  DEIL+RAYP+SGRTHQIRLH
Sbjct: 204  VLSVNGLSS--ENIDFIEKRNEMLIVRDEGSKISSTHDAKDEILIRAYPQSGRTHQIRLH 261

Query: 375  CQYLGISIRGDVKYEGVYEWRGRTYDGHALHAESLSFDHPITGLQVEFQAPLPQWASQA 199
            CQYLGI +RGDVKYEG +EW+ +TYD HALHAE+LSFDHP+TG  +EF APLP WA +A
Sbjct: 262  CQYLGIPLRGDVKYEGPHEWKEKTYDYHALHAENLSFDHPVTGSLMEFHAPLPSWAREA 320


>ref|XP_007144996.1| hypothetical protein PHAVU_007G200900g [Phaseolus vulgaris]
            gi|561018186|gb|ESW16990.1| hypothetical protein
            PHAVU_007G200900g [Phaseolus vulgaris]
          Length = 315

 Score =  384 bits (985), Expect = e-104
 Identities = 186/294 (63%), Positives = 229/294 (77%)
 Frame = -3

Query: 1074 NYPKPLSPPLPAISKQIELNRANSASLKSNLFSLSETDIIFEDEWLIVVNKPEGVYCESV 895
            NYP PLSPPLPAISKQ+EL+RA +AS  S++FSLS +DI++ D+ LI VNK  G+YCE++
Sbjct: 34   NYPVPLSPPLPAISKQMELSRAMTASSNSSIFSLSPSDILYHDDHLIAVNKHHGIYCETL 93

Query: 894  LSSIPLFLTDSMRPRFQTDPLELHMANRLDRDTSGLMVITKSHKIAGKLVKAFTDHKVTK 715
            LSS+             +   ELH+ANRLDRDTSG++++TK+HK+A KLVKAFT+H+V K
Sbjct: 94   LSSLA------------SQSHELHLANRLDRDTSGILLLTKAHKVAAKLVKAFTEHRVKK 141

Query: 714  TYIALCIGQAPKWETISIKSGHGRSKFGVWRVYSASDVGRKLPGGSVVRDMATKFEVLSI 535
            TYIALC G  P WE ++++SGHGRSKFG WRVY+ASDVGR LPGGS VR M T FEVLS+
Sbjct: 142  TYIALCTGSPPNWERVTVRSGHGRSKFGAWRVYAASDVGRTLPGGSAVRSMETSFEVLSV 201

Query: 534  SGQGSFKEPTKLRPNGEEFLVVEDPSVKGDDENDEILVRAYPRSGRTHQIRLHCQYLGIS 355
            +G GS +E +     G   LVVE+ +VK D    EI+VRAYPRSGRTHQIRLHCQYLGIS
Sbjct: 202  NGNGSLREVSDSGNEG-NVLVVEEKAVKEDGNESEIVVRAYPRSGRTHQIRLHCQYLGIS 260

Query: 354  IRGDVKYEGVYEWRGRTYDGHALHAESLSFDHPITGLQVEFQAPLPQWASQAFQ 193
            I GDVKYEGVYEW+G T+  H LHAE+LSF+HP+TG+ V  +APLP WA+QAFQ
Sbjct: 261  IIGDVKYEGVYEWKGTTHHAHHLHAETLSFEHPVTGVDVMLRAPLPLWATQAFQ 314