BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia23_contig00014670
         (1687 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI16226.3| unnamed protein product [Vitis vinifera]              508   e-141
ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III s...   508   e-141
gb|EEE61245.1| hypothetical protein OsJ_15297 [Oryza sativa Japo...   479   e-132
ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group] g...   479   e-132
ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III s...   479   e-132
ref|XP_006488216.1| PREDICTED: DNA-directed RNA polymerase III s...   475   e-131
ref|XP_006424701.1| hypothetical protein CICLE_v10027681mg [Citr...   475   e-131
gb|EXB53229.1| DNA-directed RNA polymerase III subunit RPC1 [Mor...   473   e-131
ref|XP_002531828.1| DNA-directed RNA polymerase III largest subu...   471   e-130
ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III s...   469   e-129
ref|XP_001757221.1| predicted protein [Physcomitrella patens] gi...   468   e-129
ref|XP_004976057.1| PREDICTED: DNA-directed RNA polymerase III s...   467   e-129
ref|XP_007036220.1| DNA-directed RNA polymerase [Theobroma cacao...   460   e-127
ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [S...   458   e-126
ref|XP_004251448.1| PREDICTED: DNA-directed RNA polymerase III s...   458   e-126
ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III s...   457   e-126
ref|XP_002985715.1| hypothetical protein SELMODRAFT_446351 [Sela...   456   e-125
ref|XP_006828249.1| hypothetical protein AMTR_s00023p00196820 [A...   451   e-124
ref|XP_003574945.1| PREDICTED: DNA-directed RNA polymerase III s...   447   e-123
ref|XP_002300065.1| DNA-directed RNA polymerase family protein [...   445   e-122

>emb|CBI16226.3| unnamed protein product [Vitis vinifera]
          Length = 1819

 Score =  508 bits (1308), Expect = e-141
 Identities = 265/361 (73%), Positives = 305/361 (84%), Gaps = 1/361 (0%)
 Frame = +2

Query: 2    LETCITRYHLKKXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNITLGVPRIKEII 181
            L+TCI+RY LK+                EPGTQMTLKTFHFAGVASMN+TLGVPRIKEII
Sbjct: 1456 LDTCISRYQLKRIEAGTAIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEII 1515

Query: 182  NGAKNISTPIITATLECDNDVKSARIVKGCIEKTVLGEVAKSMKIVLTSRYASIVVTLDM 361
            NGAK ISTPIITA LEC+N+VK+AR+VKG IE+T LG+VAKS+KIVLTSR A I V LDM
Sbjct: 1516 NGAKRISTPIITAALECNNNVKTARMVKGRIERTTLGQVAKSIKIVLTSRLALIAVALDM 1575

Query: 362  ERIQASQLRISAHSVKQSILQHPRTKLKPQHVEILNDQKLRIHPPNADRSKLHFELHSYK 541
            E IQASQL I ++ V++SIL++ R KLK QH+++L+  KL +HP   DRS +HFELH+ K
Sbjct: 1576 EGIQASQLSIDSNIVRESILRNRRIKLKQQHIKVLDAGKLEVHP-QGDRSTIHFELHALK 1634

Query: 542  AMLPKVIVKGISSVERAVINK-NKGKYNLLVEGKNLRAVMGTPGVDGCKTTSNHIIEVQE 718
             +LP V+VKGI +VERAVINK NK KYNLLVEG  L+ VMGT GV G +TTSNHIIEVQ+
Sbjct: 1635 NLLPTVVVKGIETVERAVINKDNKVKYNLLVEGTGLQTVMGTEGVIGRETTSNHIIEVQQ 1694

Query: 719  TLGIEAARKCIIDEIQYTMASHGMSIDIRHMMLLADLMTYKGEVLGITRFGIQKMKESVL 898
            TLGIEAARKCII+EIQYTMASHGMSIDIRHMMLLADLMT++GEVLGITRFGIQKM +SVL
Sbjct: 1695 TLGIEAARKCIINEIQYTMASHGMSIDIRHMMLLADLMTFRGEVLGITRFGIQKMDKSVL 1754

Query: 899  MLASFEKTADHLFNAACNGRDDKIEGVSECIIMGIPMQIGTGILKVRQRIEQVPMLNYAP 1078
            MLASFEKTADHLFNA+ +GRDDKIEGVSECIIMGIPMQ+GTGILKVRQR++QVP L+Y  
Sbjct: 1755 MLASFEKTADHLFNASVSGRDDKIEGVSECIIMGIPMQLGTGILKVRQRLQQVPELSYGL 1814

Query: 1079 D 1081
            D
Sbjct: 1815 D 1815


>ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Vitis
            vinifera]
          Length = 1383

 Score =  508 bits (1308), Expect = e-141
 Identities = 265/361 (73%), Positives = 305/361 (84%), Gaps = 1/361 (0%)
 Frame = +2

Query: 2    LETCITRYHLKKXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNITLGVPRIKEII 181
            L+TCI+RY LK+                EPGTQMTLKTFHFAGVASMN+TLGVPRIKEII
Sbjct: 1020 LDTCISRYQLKRIEAGTAIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEII 1079

Query: 182  NGAKNISTPIITATLECDNDVKSARIVKGCIEKTVLGEVAKSMKIVLTSRYASIVVTLDM 361
            NGAK ISTPIITA LEC+N+VK+AR+VKG IE+T LG+VAKS+KIVLTSR A I V LDM
Sbjct: 1080 NGAKRISTPIITAALECNNNVKTARMVKGRIERTTLGQVAKSIKIVLTSRLALIAVALDM 1139

Query: 362  ERIQASQLRISAHSVKQSILQHPRTKLKPQHVEILNDQKLRIHPPNADRSKLHFELHSYK 541
            E IQASQL I ++ V++SIL++ R KLK QH+++L+  KL +HP   DRS +HFELH+ K
Sbjct: 1140 EGIQASQLSIDSNIVRESILRNRRIKLKQQHIKVLDAGKLEVHP-QGDRSTIHFELHALK 1198

Query: 542  AMLPKVIVKGISSVERAVINK-NKGKYNLLVEGKNLRAVMGTPGVDGCKTTSNHIIEVQE 718
             +LP V+VKGI +VERAVINK NK KYNLLVEG  L+ VMGT GV G +TTSNHIIEVQ+
Sbjct: 1199 NLLPTVVVKGIETVERAVINKDNKVKYNLLVEGTGLQTVMGTEGVIGRETTSNHIIEVQQ 1258

Query: 719  TLGIEAARKCIIDEIQYTMASHGMSIDIRHMMLLADLMTYKGEVLGITRFGIQKMKESVL 898
            TLGIEAARKCII+EIQYTMASHGMSIDIRHMMLLADLMT++GEVLGITRFGIQKM +SVL
Sbjct: 1259 TLGIEAARKCIINEIQYTMASHGMSIDIRHMMLLADLMTFRGEVLGITRFGIQKMDKSVL 1318

Query: 899  MLASFEKTADHLFNAACNGRDDKIEGVSECIIMGIPMQIGTGILKVRQRIEQVPMLNYAP 1078
            MLASFEKTADHLFNA+ +GRDDKIEGVSECIIMGIPMQ+GTGILKVRQR++QVP L+Y  
Sbjct: 1319 MLASFEKTADHLFNASVSGRDDKIEGVSECIIMGIPMQLGTGILKVRQRLQQVPELSYGL 1378

Query: 1079 D 1081
            D
Sbjct: 1379 D 1379


>gb|EEE61245.1| hypothetical protein OsJ_15297 [Oryza sativa Japonica Group]
          Length = 1321

 Score =  479 bits (1234), Expect = e-132
 Identities = 249/364 (68%), Positives = 291/364 (79%), Gaps = 4/364 (1%)
 Frame = +2

Query: 2    LETCITRYHLKKXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNITLGVPRIKEII 181
            L+TC++RYHLKK                EPGTQMTLKTFHFAGVASMN+TLGVPRIKEII
Sbjct: 954  LDTCLSRYHLKKIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEII 1013

Query: 182  NGAKNISTPIITATLECDNDVKSARIVKGCIEKTVLGEVAKSMKIVLTSRYASIVVTLDM 361
            N AK ISTPIITA L  + DV SARIVKG +EK VLGEVA+++KIVL S   ++VV LDM
Sbjct: 1014 NAAKKISTPIITAELLSEKDVLSARIVKGSMEKAVLGEVAEAIKIVLKSSQPNLVVKLDM 1073

Query: 362  ERIQASQLRISAHSVKQSILQHPRTKLKPQHVEILNDQKLRIHPPNADRSKLHFELHSYK 541
            +RI+A  + ISA SV+ SIL HP+ KLK +HV +++  KLRI+P   D+SKL +ELH  K
Sbjct: 1074 QRIEALHMGISADSVQLSILNHPKIKLKSEHVRVIDKSKLRIYPAGIDKSKLLYELHHLK 1133

Query: 542  AMLPKVIVKGISSVERAVINK----NKGKYNLLVEGKNLRAVMGTPGVDGCKTTSNHIIE 709
            +MLPKVIVKGI +VERAVI++    N  +Y LLVEG NL AVMGTPGVD  KT SNHI+E
Sbjct: 1134 SMLPKVIVKGIPTVERAVISETGEENDKRYKLLVEGTNLLAVMGTPGVDAMKTKSNHIME 1193

Query: 710  VQETLGIEAARKCIIDEIQYTMASHGMSIDIRHMMLLADLMTYKGEVLGITRFGIQKMKE 889
            V  TLGIEAAR+ IIDEIQYTM SHGM+ID RHMMLLADLMTYKGE+LGITR+GI KMK 
Sbjct: 1194 VNRTLGIEAARRSIIDEIQYTMKSHGMNIDSRHMMLLADLMTYKGEILGITRYGIAKMKS 1253

Query: 890  SVLMLASFEKTADHLFNAACNGRDDKIEGVSECIIMGIPMQIGTGILKVRQRIEQVPMLN 1069
            SVLMLASFEKTA+HLFNA+ +GR+D+IEGVSECIIMGIPMQ+GTGILKVRQR++ +P   
Sbjct: 1254 SVLMLASFEKTAEHLFNASYSGREDQIEGVSECIIMGIPMQLGTGILKVRQRLDHLPEFK 1313

Query: 1070 YAPD 1081
            Y PD
Sbjct: 1314 YQPD 1317


>ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group]
            gi|38346223|emb|CAE02045.2| OJ990528_30.3 [Oryza sativa
            Japonica Group] gi|38347455|emb|CAD41360.2|
            OSJNBa0076N16.24 [Oryza sativa Japonica Group]
            gi|113564746|dbj|BAF15089.1| Os04g0492300 [Oryza sativa
            Japonica Group] gi|116310339|emb|CAH67354.1|
            OSIGBa0130B08.14 [Oryza sativa Indica Group]
            gi|116310740|emb|CAH67535.1| H0425E08.3 [Oryza sativa
            Indica Group] gi|215768005|dbj|BAH00234.1| unnamed
            protein product [Oryza sativa Japonica Group]
            gi|218195112|gb|EEC77539.1| hypothetical protein
            OsI_16437 [Oryza sativa Indica Group]
          Length = 1383

 Score =  479 bits (1234), Expect = e-132
 Identities = 249/364 (68%), Positives = 291/364 (79%), Gaps = 4/364 (1%)
 Frame = +2

Query: 2    LETCITRYHLKKXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNITLGVPRIKEII 181
            L+TC++RYHLKK                EPGTQMTLKTFHFAGVASMN+TLGVPRIKEII
Sbjct: 1016 LDTCLSRYHLKKIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEII 1075

Query: 182  NGAKNISTPIITATLECDNDVKSARIVKGCIEKTVLGEVAKSMKIVLTSRYASIVVTLDM 361
            N AK ISTPIITA L  + DV SARIVKG +EK VLGEVA+++KIVL S   ++VV LDM
Sbjct: 1076 NAAKKISTPIITAELLSEKDVLSARIVKGSMEKAVLGEVAEAIKIVLKSSQPNLVVKLDM 1135

Query: 362  ERIQASQLRISAHSVKQSILQHPRTKLKPQHVEILNDQKLRIHPPNADRSKLHFELHSYK 541
            +RI+A  + ISA SV+ SIL HP+ KLK +HV +++  KLRI+P   D+SKL +ELH  K
Sbjct: 1136 QRIEALHMGISADSVQLSILNHPKIKLKSEHVRVIDKSKLRIYPAGIDKSKLLYELHHLK 1195

Query: 542  AMLPKVIVKGISSVERAVINK----NKGKYNLLVEGKNLRAVMGTPGVDGCKTTSNHIIE 709
            +MLPKVIVKGI +VERAVI++    N  +Y LLVEG NL AVMGTPGVD  KT SNHI+E
Sbjct: 1196 SMLPKVIVKGIPTVERAVISETGEENDKRYKLLVEGTNLLAVMGTPGVDAMKTKSNHIME 1255

Query: 710  VQETLGIEAARKCIIDEIQYTMASHGMSIDIRHMMLLADLMTYKGEVLGITRFGIQKMKE 889
            V  TLGIEAAR+ IIDEIQYTM SHGM+ID RHMMLLADLMTYKGE+LGITR+GI KMK 
Sbjct: 1256 VNRTLGIEAARRSIIDEIQYTMKSHGMNIDSRHMMLLADLMTYKGEILGITRYGIAKMKS 1315

Query: 890  SVLMLASFEKTADHLFNAACNGRDDKIEGVSECIIMGIPMQIGTGILKVRQRIEQVPMLN 1069
            SVLMLASFEKTA+HLFNA+ +GR+D+IEGVSECIIMGIPMQ+GTGILKVRQR++ +P   
Sbjct: 1316 SVLMLASFEKTAEHLFNASYSGREDQIEGVSECIIMGIPMQLGTGILKVRQRLDHLPEFK 1375

Query: 1070 YAPD 1081
            Y PD
Sbjct: 1376 YQPD 1379


>ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Oryza
            brachyantha]
          Length = 1389

 Score =  479 bits (1232), Expect = e-132
 Identities = 246/360 (68%), Positives = 288/360 (80%)
 Frame = +2

Query: 2    LETCITRYHLKKXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNITLGVPRIKEII 181
            L+TC++RYH KK                EPGTQMTLKTFHFAGVASMN+TLGVPRIKEII
Sbjct: 1026 LDTCLSRYHSKKIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEII 1085

Query: 182  NGAKNISTPIITATLECDNDVKSARIVKGCIEKTVLGEVAKSMKIVLTSRYASIVVTLDM 361
            N AK ISTPIITA L    DV SAR+VKG +EK VLGEVA+ +KIVL S   ++VV LDM
Sbjct: 1086 NAAKKISTPIITAELLSGKDVLSARVVKGSMEKAVLGEVAEDIKIVLKSSQPNLVVKLDM 1145

Query: 362  ERIQASQLRISAHSVKQSILQHPRTKLKPQHVEILNDQKLRIHPPNADRSKLHFELHSYK 541
            +RI+   + ISA SV+ SIL HPR KLK +HV +++  KLR++P   D+SKL +ELH+ K
Sbjct: 1146 QRIEDLHMGISADSVQLSILNHPRIKLKSEHVRVIDKAKLRVYPTAIDKSKLLYELHNLK 1205

Query: 542  AMLPKVIVKGISSVERAVINKNKGKYNLLVEGKNLRAVMGTPGVDGCKTTSNHIIEVQET 721
            +MLPKVIVKGI +VERAVI++   KY+LLVEG NL AVMGTPGVD  KT SNHI+EV  T
Sbjct: 1206 SMLPKVIVKGIPTVERAVISQTGDKYSLLVEGTNLLAVMGTPGVDAMKTKSNHIMEVNRT 1265

Query: 722  LGIEAARKCIIDEIQYTMASHGMSIDIRHMMLLADLMTYKGEVLGITRFGIQKMKESVLM 901
            LGIEAAR+ IIDEIQYTM SHGM+ID RHMMLLADLMTYKGE+LGITR+GI KMK SVLM
Sbjct: 1266 LGIEAARRSIIDEIQYTMTSHGMNIDSRHMMLLADLMTYKGEILGITRYGIAKMKSSVLM 1325

Query: 902  LASFEKTADHLFNAACNGRDDKIEGVSECIIMGIPMQIGTGILKVRQRIEQVPMLNYAPD 1081
            LASFEKTA+HLFNA+ +GR+D+IEGVSECIIMGIPMQ+GTGILKVRQR++ +P   Y PD
Sbjct: 1326 LASFEKTAEHLFNASYSGREDQIEGVSECIIMGIPMQLGTGILKVRQRLDHLPEFKYQPD 1385


>ref|XP_006488216.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
            X1 [Citrus sinensis] gi|568870034|ref|XP_006488217.1|
            PREDICTED: DNA-directed RNA polymerase III subunit
            rpc1-like isoform X2 [Citrus sinensis]
          Length = 1404

 Score =  475 bits (1223), Expect = e-131
 Identities = 252/373 (67%), Positives = 293/373 (78%), Gaps = 13/373 (3%)
 Frame = +2

Query: 2    LETCITRYHLKKXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNITLGVPRIKEII 181
            ++TC +RYH+K+                EPGTQMTLKTFHFAGVASMNIT GVPRIKEII
Sbjct: 1029 IQTCFSRYHVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEII 1088

Query: 182  NGAKNISTPIITATLECDNDVKSARIVKGCIEKTVLGEVAKSMKIVLTSRYASIVVTLDM 361
            NGAK ISTPIITA LEC+++  +AR+VKG IEKT+LG+VAKS+KIV+TSR ASIV+ LDM
Sbjct: 1089 NGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDM 1148

Query: 362  ERIQASQLRISAHSVKQSILQHPRTKLKPQHVEILNDQKLRIHPPNADRSKLHFELHSYK 541
            E IQ + L I+A  VK+SI+Q P+ KLK QH+++L+ +KL I PP  D+SK+HFEL+S K
Sbjct: 1149 ETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPP-VDKSKIHFELYSLK 1207

Query: 542  AMLPKVIVKGISSVERAVI------------NKNKGKYNLLVEGKNLRAVMGTPGVDGCK 685
             +LP VIVKGI +VER VI            N  K KY LLVEG  L+AVMG  G+DGCK
Sbjct: 1208 NVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCK 1267

Query: 686  TTSNHIIEVQETLGIEAARKCIIDEIQYTMASHGMSIDIRHMMLLADLMTYKGEVLGITR 865
            T SNHI EVQ+TLGIEAAR CIIDEI  TM +HGMSID RHMMLLADLMT++GEVLGITR
Sbjct: 1268 TKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITR 1327

Query: 866  FGIQKMKESVLMLASFEKTADHLFNAACNGRDDKIEGVSECIIMGIPMQIGTGILKVRQR 1045
            FGIQKM +SVLMLASFEKTADHLFNA+ NGRDD+IEGVSECIIMGIPM +GTGILK+RQR
Sbjct: 1328 FGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQR 1387

Query: 1046 IEQVPMLNY-APD 1081
                PML Y APD
Sbjct: 1388 DAVPPMLKYGAPD 1400


>ref|XP_006424701.1| hypothetical protein CICLE_v10027681mg [Citrus clementina]
            gi|557526635|gb|ESR37941.1| hypothetical protein
            CICLE_v10027681mg [Citrus clementina]
          Length = 1397

 Score =  475 bits (1223), Expect = e-131
 Identities = 252/373 (67%), Positives = 293/373 (78%), Gaps = 13/373 (3%)
 Frame = +2

Query: 2    LETCITRYHLKKXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNITLGVPRIKEII 181
            ++TC +RYH+K+                EPGTQMTLKTFHFAGVASMNIT GVPRIKEII
Sbjct: 1022 IQTCFSRYHVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEII 1081

Query: 182  NGAKNISTPIITATLECDNDVKSARIVKGCIEKTVLGEVAKSMKIVLTSRYASIVVTLDM 361
            NGAK ISTPIITA LEC+++  +AR+VKG IEKT+LG+VAKS+KIV+TSR ASIV+ LDM
Sbjct: 1082 NGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDM 1141

Query: 362  ERIQASQLRISAHSVKQSILQHPRTKLKPQHVEILNDQKLRIHPPNADRSKLHFELHSYK 541
            E IQ + L I+A  VK+SI+Q P+ KLK QH+++L+ +KL I PP  D+SK+HFEL+S K
Sbjct: 1142 ETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPP-VDKSKIHFELYSLK 1200

Query: 542  AMLPKVIVKGISSVERAVI------------NKNKGKYNLLVEGKNLRAVMGTPGVDGCK 685
             +LP VIVKGI +VER VI            N  K KY LLVEG  L+AVMG  G+DGCK
Sbjct: 1201 NVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCK 1260

Query: 686  TTSNHIIEVQETLGIEAARKCIIDEIQYTMASHGMSIDIRHMMLLADLMTYKGEVLGITR 865
            T SNHI EVQ+TLGIEAAR CIIDEI  TM +HGMSID RHMMLLADLMT++GEVLGITR
Sbjct: 1261 TKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITR 1320

Query: 866  FGIQKMKESVLMLASFEKTADHLFNAACNGRDDKIEGVSECIIMGIPMQIGTGILKVRQR 1045
            FGIQKM +SVLMLASFEKTADHLFNA+ NGRDD+IEGVSECIIMGIPM +GTGILK+RQR
Sbjct: 1321 FGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQR 1380

Query: 1046 IEQVPMLNY-APD 1081
                PML Y APD
Sbjct: 1381 DAVPPMLKYGAPD 1393


>gb|EXB53229.1| DNA-directed RNA polymerase III subunit RPC1 [Morus notabilis]
          Length = 1179

 Score =  473 bits (1218), Expect = e-131
 Identities = 249/366 (68%), Positives = 287/366 (78%), Gaps = 7/366 (1%)
 Frame = +2

Query: 2    LETCITRYHLKKXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNITLGVPRIKEII 181
            L+TCI+RYH KK                EPGTQMTLKTFHFAGVASMN+TLGVPRIKEII
Sbjct: 808  LDTCISRYHSKKIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEII 867

Query: 182  NGAKNISTPIITATLECDNDVKSARIVKGCIEKTVLGEVAKSMKIVLTSRYASIVVTLDM 361
            NGAK ISTPIITA LECDN+V  ARIV+G IEK  LG+VAKS+K V+TSR AS+V+TLDM
Sbjct: 868  NGAKKISTPIITAILECDNNVNFARIVRGRIEKISLGQVAKSIKTVMTSRVASVVITLDM 927

Query: 362  ERIQASQLRISAHSVKQSILQHPRTKLKPQHVEILNDQKLRIHPPNADRSKLHFELHSYK 541
            ERIQ + L I A+ V+ SILQ PR KLK +H+ +L+ +KL I P  ++RSKL+  L    
Sbjct: 928  ERIQDALLSIDANVVRDSILQTPRIKLKKEHIRVLDFKKLEILPYESNRSKLYHHLQFLA 987

Query: 542  AMLPKVIVKGISSVERAVINKNKGK-------YNLLVEGKNLRAVMGTPGVDGCKTTSNH 700
             ML  ++VKGI +VERAVI+  K K       Y LLVEG  L  VMGT GVDG  T +NH
Sbjct: 988  KMLQNILVKGIKTVERAVISSEKDKKTDISKKYKLLVEGTGLLGVMGTEGVDGRNTKTNH 1047

Query: 701  IIEVQETLGIEAARKCIIDEIQYTMASHGMSIDIRHMMLLADLMTYKGEVLGITRFGIQK 880
            IIEVQ+TLGIEAAR CIIDEI+YTM SHGMSID RHMMLLAD+MT +GEVLGITRFGIQK
Sbjct: 1048 IIEVQQTLGIEAARTCIIDEIEYTMKSHGMSIDTRHMMLLADVMTSRGEVLGITRFGIQK 1107

Query: 881  MKESVLMLASFEKTADHLFNAACNGRDDKIEGVSECIIMGIPMQIGTGILKVRQRIEQVP 1060
            M +SVLMLASFEKTADHLFNA+ NGR+DKIEGVSECIIMGIPMQIGTG++KVRQR++  P
Sbjct: 1108 MDKSVLMLASFEKTADHLFNASVNGREDKIEGVSECIIMGIPMQIGTGMIKVRQRVDVPP 1167

Query: 1061 MLNYAP 1078
            ML+Y P
Sbjct: 1168 MLSYGP 1173


>ref|XP_002531828.1| DNA-directed RNA polymerase III largest subunit, putative [Ricinus
            communis] gi|223528524|gb|EEF30548.1| DNA-directed RNA
            polymerase III largest subunit, putative [Ricinus
            communis]
          Length = 1383

 Score =  471 bits (1213), Expect = e-130
 Identities = 249/370 (67%), Positives = 294/370 (79%), Gaps = 10/370 (2%)
 Frame = +2

Query: 2    LETCITRYHLKKXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNITLGVPRIKEII 181
            ++TCI RY  K+                EPGTQMTLKTFHFAGVASMNIT GVPRIKEII
Sbjct: 1011 VKTCINRYLWKRVEPGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEII 1070

Query: 182  NGAKNISTPIITATLECDNDVKSARIVKGCIEKTVLGEVAKSMKIVLTSRYASIVVTLDM 361
            NGAK ISTPIITA LE + +V +ARI KG I+KTVLG+VAKS+KIV+TSR AS+V+TLDM
Sbjct: 1071 NGAKKISTPIITAELEQNTNVTAARIAKGRIQKTVLGQVAKSIKIVMTSRSASVVITLDM 1130

Query: 362  ERIQASQLRISAHSVKQSILQHPRTKLKPQHVEILNDQKLRIHPPNADRSKLHFELHSYK 541
            + IQ +QL + A+ VK++IL+ PR KLKPQH+++L+ +KL + P   DR ++HFELH+ K
Sbjct: 1131 KTIQNAQLSLDANIVKEAILRTPRIKLKPQHIKVLDTRKLEVIPLG-DRERVHFELHNLK 1189

Query: 542  AMLPKVIVKGISSVERAVI--NKNKGK--------YNLLVEGKNLRAVMGTPGVDGCKTT 691
             +LP +IV+GI +VERAVI   K+ GK        YN+LVEG  L  VMGT GVDGCKTT
Sbjct: 1190 NLLPSIIVQGIKTVERAVIAQKKHDGKANDQELPTYNMLVEGMGLDLVMGTEGVDGCKTT 1249

Query: 692  SNHIIEVQETLGIEAARKCIIDEIQYTMASHGMSIDIRHMMLLADLMTYKGEVLGITRFG 871
            SNH++EVQ+ LGIEAARKCIIDEI  TM  HGMSIDIRHMMLL DLMT+KGEVLGITRFG
Sbjct: 1250 SNHVMEVQKFLGIEAARKCIIDEINQTMEHHGMSIDIRHMMLLGDLMTFKGEVLGITRFG 1309

Query: 872  IQKMKESVLMLASFEKTADHLFNAACNGRDDKIEGVSECIIMGIPMQIGTGILKVRQRIE 1051
            IQKM +SVLMLASFEKTADHL++AA  GRDDKIEGVSECIIMGIPMQIGTGILKV+QR++
Sbjct: 1310 IQKMDKSVLMLASFEKTADHLYHAAVFGRDDKIEGVSECIIMGIPMQIGTGILKVQQRVD 1369

Query: 1052 QVPMLNYAPD 1081
              P+LNY  D
Sbjct: 1370 PPPVLNYGSD 1379


>ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Cucumis
            sativus]
          Length = 1400

 Score =  469 bits (1207), Expect = e-129
 Identities = 241/365 (66%), Positives = 289/365 (79%), Gaps = 6/365 (1%)
 Frame = +2

Query: 2    LETCITRYHLKKXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNITLGVPRIKEII 181
            L+TC++RYH KK                EPGTQMTLKTFHFAGVASMN+TLGVPRIKEII
Sbjct: 1031 LDTCLSRYHTKKIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEII 1090

Query: 182  NGAKNISTPIITATLECDNDVKSARIVKGCIEKTVLGEVAKSMKIVLTSRYASIVVTLDM 361
            NGAK ISTPI+TA L  D++V  AR+VK  IEKT LG++AK ++IV++SR A I + LDM
Sbjct: 1091 NGAKRISTPIVTAALTHDDNVNIARMVKARIEKTNLGQIAKCIQIVMSSRSALIEIKLDM 1150

Query: 362  ERIQASQLRISAHSVKQSILQHPRTKLKPQHVEILNDQKLRIHPPNADRSKLHFELHSYK 541
            E+I+ ++L + A+ VKQ+IL  P+ KLK +H+ +L+D+KLR+ P +ADR+KLHF LH  K
Sbjct: 1151 EKIRDAELYVDANVVKQAILVTPKLKLKHEHINVLDDRKLRVLPQDADRNKLHFNLHFLK 1210

Query: 542  AMLPKVIVKGISSVERAVINKNKGK------YNLLVEGKNLRAVMGTPGVDGCKTTSNHI 703
             MLP V+VKGI +V RAVI + K K      ++LLVEG  L+AVMGT GVDGC T SNHI
Sbjct: 1211 NMLPGVVVKGIKTVGRAVIKEEKDKARNAKKFSLLVEGTGLQAVMGTEGVDGCNTKSNHI 1270

Query: 704  IEVQETLGIEAARKCIIDEIQYTMASHGMSIDIRHMMLLADLMTYKGEVLGITRFGIQKM 883
            IEVQ+ LGIEAARKCII+EI+YTM SHGMSIDIRHMMLL DLMT++GEVLGITRFGIQKM
Sbjct: 1271 IEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLGDLMTFRGEVLGITRFGIQKM 1330

Query: 884  KESVLMLASFEKTADHLFNAACNGRDDKIEGVSECIIMGIPMQIGTGILKVRQRIEQVPM 1063
             +SVLMLASFEKTADHLFNA+ NGRDDKIEGVSEC+IMGIPM +GTG+LKVRQR+     
Sbjct: 1331 DKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIMGIPMPLGTGMLKVRQRVSVPQQ 1390

Query: 1064 LNYAP 1078
            L Y P
Sbjct: 1391 LPYGP 1395


>ref|XP_001757221.1| predicted protein [Physcomitrella patens] gi|162691719|gb|EDQ78080.1|
            predicted protein [Physcomitrella patens]
          Length = 1397

 Score =  468 bits (1203), Expect = e-129
 Identities = 245/359 (68%), Positives = 284/359 (79%)
 Frame = +2

Query: 2    LETCITRYHLKKXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNITLGVPRIKEII 181
            L+TCI RYH+K+                EPGTQMTLKTFHFAGVASMNITLGVPRIKEII
Sbjct: 1034 LDTCIKRYHMKRVEPGAAVGAVGAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEII 1093

Query: 182  NGAKNISTPIITATLECDNDVKSARIVKGCIEKTVLGEVAKSMKIVLTSRYASIVVTLDM 361
            N +KNISTPIITA L   ND K+ARIVKG IEKT LGEVAKS+K VL +  A I V LDM
Sbjct: 1094 NASKNISTPIITAVLVSGNDEKAARIVKGRIEKTTLGEVAKSIKTVLRASQAIISVKLDM 1153

Query: 362  ERIQASQLRISAHSVKQSILQHPRTKLKPQHVEILNDQKLRIHPPNADRSKLHFELHSYK 541
            +RI A QL I++ +V  +I+Q P+ KLK  ++ I++  KL + PP+ D+ KL+F LHS  
Sbjct: 1154 KRIDALQLDINSDTVALAIVQTPKIKLKHVNIRIVDRDKLIVIPPDQDKGKLYFYLHSLC 1213

Query: 542  AMLPKVIVKGISSVERAVINKNKGKYNLLVEGKNLRAVMGTPGVDGCKTTSNHIIEVQET 721
             MLPKVIVKGI SVERAVINK KG YNLLVEG NL+AVMG  GV+G  T SNH+IE ++T
Sbjct: 1214 NMLPKVIVKGIPSVERAVINKEKGVYNLLVEGTNLKAVMGISGVNGKLTKSNHVIEAEQT 1273

Query: 722  LGIEAARKCIIDEIQYTMASHGMSIDIRHMMLLADLMTYKGEVLGITRFGIQKMKESVLM 901
            LGIEAAR  IIDEIQYTM SHGM+ID RHMMLLAD+MTYKGEVLGITRFGI KMK+SVLM
Sbjct: 1274 LGIEAARNVIIDEIQYTMGSHGMTIDARHMMLLADVMTYKGEVLGITRFGIAKMKDSVLM 1333

Query: 902  LASFEKTADHLFNAACNGRDDKIEGVSECIIMGIPMQIGTGILKVRQRIEQVPMLNYAP 1078
            LASFEKT DHLF+AA +GR DKIEGVSECIIMGIPM IGTG+ K+RQ++E++P L+Y P
Sbjct: 1334 LASFEKTTDHLFDAAIHGRVDKIEGVSECIIMGIPMPIGTGLFKIRQKVEKLPKLSYGP 1392


>ref|XP_004976057.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Setaria
            italica]
          Length = 1397

 Score =  467 bits (1202), Expect = e-129
 Identities = 245/365 (67%), Positives = 285/365 (78%), Gaps = 5/365 (1%)
 Frame = +2

Query: 2    LETCITRYHLKKXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNITLGVPRIKEII 181
            L+TC +RY+ K                 EPGTQMTLKTFHFAGVASMN+TLGVPRIKEII
Sbjct: 1029 LDTCFSRYNSKAIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEII 1088

Query: 182  NGAKNISTPIITATLECDNDVKSARIVKGCIEKTVLGEVAKSMKIVLTSRYASIVVTLDM 361
            N AK ISTPIIT  L    DV SARIVKG +EK VLGEVA ++KIVL S   ++VV LDM
Sbjct: 1089 NAAKKISTPIITTELLSRKDVLSARIVKGAMEKAVLGEVASAIKIVLKSSQPNLVVKLDM 1148

Query: 362  ERIQASQLRISAHSVKQSILQHPRTKLKPQHVEILNDQKLRIHPPNADRSKLHFELHSYK 541
            + I+A  + ISA SV+ SIL HP+ KLK +HV +++  KLRI+P   D+SKL  ELH+ K
Sbjct: 1149 QLIEALHMGISADSVQLSILNHPKIKLKSEHVRVIDRAKLRIYPAGTDKSKLQLELHNLK 1208

Query: 542  AMLPKVIVKGISSVERAVINKNKG-----KYNLLVEGKNLRAVMGTPGVDGCKTTSNHII 706
            AMLPKVIVKGI +VER VI++ K      KYNLLVEG NL AVMGTPGVD   T SNHI+
Sbjct: 1209 AMLPKVIVKGIPTVERVVIDERKKEGKLEKYNLLVEGTNLLAVMGTPGVDARNTKSNHIM 1268

Query: 707  EVQETLGIEAARKCIIDEIQYTMASHGMSIDIRHMMLLADLMTYKGEVLGITRFGIQKMK 886
            E+  TLGIEAAR+ IIDEIQYTM SHGM+ID+RHMMLLADLMTYKGEVLGITR+GI KMK
Sbjct: 1269 EMNSTLGIEAARRSIIDEIQYTMKSHGMNIDVRHMMLLADLMTYKGEVLGITRYGIAKMK 1328

Query: 887  ESVLMLASFEKTADHLFNAACNGRDDKIEGVSECIIMGIPMQIGTGILKVRQRIEQVPML 1066
             SVLMLASFEKT++HLFNA+ +GR+D+IEGVSECIIMGIPMQ+GTGILKVRQR++ +P L
Sbjct: 1329 TSVLMLASFEKTSEHLFNASYSGREDEIEGVSECIIMGIPMQLGTGILKVRQRLDHLPEL 1388

Query: 1067 NYAPD 1081
             Y PD
Sbjct: 1389 KYQPD 1393


>ref|XP_007036220.1| DNA-directed RNA polymerase [Theobroma cacao]
            gi|508773465|gb|EOY20721.1| DNA-directed RNA polymerase
            [Theobroma cacao]
          Length = 1395

 Score =  460 bits (1184), Expect = e-127
 Identities = 245/372 (65%), Positives = 291/372 (78%), Gaps = 12/372 (3%)
 Frame = +2

Query: 2    LETCITRYHLKKXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNITLGVPRIKEII 181
            + TCI+RY  K                 EPGTQMTLKTFHFAGVASMNIT GVPRIKEII
Sbjct: 1021 VSTCISRYRSKVIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEII 1080

Query: 182  NGAKNISTPIITATLECDNDVKSARIVKGCIEKTVLGEVAKSMKIVLTSRYASIVVTLDM 361
            N AK ISTP+ITA LE D++   A+IVKG IEKTVLG+VAKS+KIV+TSR AS+V+TLDM
Sbjct: 1081 NAAKRISTPVITAELEFDDNPNIAQIVKGRIEKTVLGQVAKSIKIVITSRSASVVITLDM 1140

Query: 362  ERIQASQLRISAHSVKQSILQHPRTKLKPQHVEILNDQKLRIHPPNADRSKLHFELHSYK 541
            E I  ++L I A+ VK+SILQ P+ KLK QHV++L+ +KL + PP ADRS++HFELHS K
Sbjct: 1141 EIILDAELYIDANIVKESILQTPKIKLKEQHVKVLDGRKLEVVPP-ADRSQIHFELHSLK 1199

Query: 542  AMLPKVIVKGISSVERAVI-NKNKGKYN-----------LLVEGKNLRAVMGTPGVDGCK 685
             +LP V+VKGI +VER V+ +KNK K N           LLVEG  L+AVMG  G+DG +
Sbjct: 1200 NLLPLVVVKGIKTVERTVVYDKNKEKKNQKEEETTKHFQLLVEGTGLQAVMGIEGIDGRR 1259

Query: 686  TTSNHIIEVQETLGIEAARKCIIDEIQYTMASHGMSIDIRHMMLLADLMTYKGEVLGITR 865
            T SNH++E+++ LGIEAARKCIIDEI  TM  HGM+ID RHMMLLAD+MT++GEVLGITR
Sbjct: 1260 TWSNHVMEMEQILGIEAARKCIIDEIAQTMEHHGMTIDRRHMMLLADVMTFRGEVLGITR 1319

Query: 866  FGIQKMKESVLMLASFEKTADHLFNAACNGRDDKIEGVSECIIMGIPMQIGTGILKVRQR 1045
            FGIQKM +S+LMLASFE+TADHLFNAA NGRDDKIEGV+ECIIMGIPMQIGTGILKV QR
Sbjct: 1320 FGIQKMDKSILMLASFERTADHLFNAAVNGRDDKIEGVTECIIMGIPMQIGTGILKVIQR 1379

Query: 1046 IEQVPMLNYAPD 1081
            ++  PML Y PD
Sbjct: 1380 VDPPPMLRYGPD 1391


>ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [Sorghum bicolor]
            gi|241937900|gb|EES11045.1| hypothetical protein
            SORBIDRAFT_06g021120 [Sorghum bicolor]
          Length = 1391

 Score =  458 bits (1179), Expect = e-126
 Identities = 239/365 (65%), Positives = 284/365 (77%), Gaps = 5/365 (1%)
 Frame = +2

Query: 2    LETCITRYHLKKXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNITLGVPRIKEII 181
            L+TC++RY  KK                EPGTQMTLKTFHFAGVASMN+TLGVPRIKEII
Sbjct: 1023 LDTCLSRYQSKKIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEII 1082

Query: 182  NGAKNISTPIITATLECDNDVKSARIVKGCIEKTVLGEVAKSMKIVLTSRYASIVVTLDM 361
            N A+ ISTPIITA L    DV SARIVKG +EK VLGEVA +++IVL S   +++V LDM
Sbjct: 1083 NAARKISTPIITAQLLSKKDVLSARIVKGSMEKAVLGEVAVAIQIVLKSSQPNLIVKLDM 1142

Query: 362  ERIQASQLRISAHSVKQSILQHPRTKLKPQHVEILNDQKLRIHPPNADRSKLHFELHSYK 541
            + I++  + ISA SV+ SIL HP+ KLK +HV +++  KLRI+P   D+ KL  ELH+ K
Sbjct: 1143 QLIESLHMGISADSVQLSILNHPKIKLKSEHVRVIDRAKLRIYPAGTDKRKLQLELHNLK 1202

Query: 542  AMLPKVIVKGISSVERAVINKNKGK-----YNLLVEGKNLRAVMGTPGVDGCKTTSNHII 706
            ++LPKVIVKGI +VER VI++ K K     Y LLVEG NL AVMGTPGVD  KT SNHI+
Sbjct: 1203 SILPKVIVKGIPTVERVVIDEVKVKNETERYQLLVEGTNLLAVMGTPGVDATKTKSNHIM 1262

Query: 707  EVQETLGIEAARKCIIDEIQYTMASHGMSIDIRHMMLLADLMTYKGEVLGITRFGIQKMK 886
            E  +TLGIEAAR+ IIDEIQYTM SHGM+ID RHMMLLADLMTYKGE+LGITR+GI KMK
Sbjct: 1263 ETNQTLGIEAARRSIIDEIQYTMKSHGMNIDRRHMMLLADLMTYKGEILGITRYGIAKMK 1322

Query: 887  ESVLMLASFEKTADHLFNAACNGRDDKIEGVSECIIMGIPMQIGTGILKVRQRIEQVPML 1066
             SVLMLASFEKT++HLFNA+ +GR+D+IEGVSECIIMGIPMQ+GTGILKVRQR++ VP  
Sbjct: 1323 SSVLMLASFEKTSEHLFNASYSGREDQIEGVSECIIMGIPMQLGTGILKVRQRLDHVPEF 1382

Query: 1067 NYAPD 1081
             Y PD
Sbjct: 1383 KYQPD 1387


>ref|XP_004251448.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Solanum
            lycopersicum]
          Length = 1390

 Score =  458 bits (1178), Expect = e-126
 Identities = 244/370 (65%), Positives = 285/370 (77%), Gaps = 10/370 (2%)
 Frame = +2

Query: 2    LETCITRYHLKKXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNITLGVPRIKEII 181
            L TCI+RYHLK+                EPGTQMTLKTFHFAGVASMN+TLGVPRIKEII
Sbjct: 1018 LNTCISRYHLKRLEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEII 1077

Query: 182  NGAKNISTPIITATLECDNDVKSARIVKGCIEKTVLGEVAKSMKIVLTSRYASIVVTLDM 361
            N AK I+TPIITA L    ++ +AR++K  IEKT+LG+VAKS+KIVL SR ASI ++LDM
Sbjct: 1078 NAAKKITTPIITAKLLSAGNLTAARMIKARIEKTLLGQVAKSVKIVLASRLASIAISLDM 1137

Query: 362  ERIQASQLRISAHSVKQSILQHPRTKLKPQHVEILNDQKLRIHPPNADRSKLHFELHSYK 541
            E IQ SQL I A++VKQSILQ  + KLK   +++LN +KL + P  A++ KLHFELH  K
Sbjct: 1138 ETIQVSQLCIDAYTVKQSILQTSKIKLKEHQIKVLNPRKLEVFP-QANKDKLHFELHRLK 1196

Query: 542  AMLPKVIVKGISSVERAVINKNKGK----------YNLLVEGKNLRAVMGTPGVDGCKTT 691
              LP V+VKGI++V+RAV+NK + K          Y LLVEG  L AVMG  GVDG  T 
Sbjct: 1197 NKLPAVVVKGITTVQRAVVNKEQQKDRKNDVKGETYELLVEGTGLLAVMGIEGVDGRYTK 1256

Query: 692  SNHIIEVQETLGIEAARKCIIDEIQYTMASHGMSIDIRHMMLLADLMTYKGEVLGITRFG 871
            SNHI+EVQ TLGIEAAR  IIDEI YTM+SHGM+ID+RHMMLLADLMTYKGEVLGITR G
Sbjct: 1257 SNHIMEVQHTLGIEAARVSIIDEINYTMSSHGMTIDLRHMMLLADLMTYKGEVLGITRHG 1316

Query: 872  IQKMKESVLMLASFEKTADHLFNAACNGRDDKIEGVSECIIMGIPMQIGTGILKVRQRIE 1051
            +QKMK+SVLMLASFEKT DHLFNA+ NGRDDKIEGV+ECIIMGIPM IGTG+ K+RQR+E
Sbjct: 1317 VQKMKDSVLMLASFEKTTDHLFNASVNGRDDKIEGVTECIIMGIPMTIGTGMFKLRQRVE 1376

Query: 1052 QVPMLNYAPD 1081
             V  LNY PD
Sbjct: 1377 HVE-LNYQPD 1385


>ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
            X1 [Solanum tuberosum]
          Length = 1394

 Score =  457 bits (1177), Expect = e-126
 Identities = 244/370 (65%), Positives = 285/370 (77%), Gaps = 10/370 (2%)
 Frame = +2

Query: 2    LETCITRYHLKKXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNITLGVPRIKEII 181
            L TCI+RYHLK+                EPGTQMTLKTFHFAGVASMN+TLGVPRIKEII
Sbjct: 1018 LNTCISRYHLKRLEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEII 1077

Query: 182  NGAKNISTPIITATLECDNDVKSARIVKGCIEKTVLGEVAKSMKIVLTSRYASIVVTLDM 361
            N AK I+TPIIT  L    ++ +AR++K  IEKT+LG+VAKS+KIVL SR ASI ++LDM
Sbjct: 1078 NAAKKITTPIITTKLLSAANLTAARMIKARIEKTLLGQVAKSVKIVLASRLASIAISLDM 1137

Query: 362  ERIQASQLRISAHSVKQSILQHPRTKLKPQHVEILNDQKLRIHPPNADRSKLHFELHSYK 541
            E IQ SQL I A++VKQSILQ  + KLK   +++LN +KL + P  A++ KLHFELH  K
Sbjct: 1138 ETIQVSQLCIDAYTVKQSILQTSKIKLKEHQIKVLNPRKLEVFP-QANKDKLHFELHRLK 1196

Query: 542  AMLPKVIVKGISSVERAVINKNKGK----------YNLLVEGKNLRAVMGTPGVDGCKTT 691
              LP V+VKGI++V+RAV+NK + K          Y LLVEG  L AVMG  GVDG  T 
Sbjct: 1197 NKLPAVVVKGITTVQRAVVNKEQQKDRKNDVKGETYELLVEGTGLLAVMGIEGVDGRYTK 1256

Query: 692  SNHIIEVQETLGIEAARKCIIDEIQYTMASHGMSIDIRHMMLLADLMTYKGEVLGITRFG 871
            SNHI+EVQ TLGIEAAR  IIDEI YTM+SHGM+ID+RHMMLLADLMTYKGEVLGITR G
Sbjct: 1257 SNHIMEVQNTLGIEAARVSIIDEINYTMSSHGMTIDLRHMMLLADLMTYKGEVLGITRHG 1316

Query: 872  IQKMKESVLMLASFEKTADHLFNAACNGRDDKIEGVSECIIMGIPMQIGTGILKVRQRIE 1051
            +QKMK+SVLMLASFEKT DHLFNA+ NGRDDKIEGV+ECIIMGIPM IGTG+ K+RQR+E
Sbjct: 1317 VQKMKDSVLMLASFEKTTDHLFNASVNGRDDKIEGVTECIIMGIPMTIGTGMFKLRQRVE 1376

Query: 1052 QVPMLNYAPD 1081
            QV  LNY PD
Sbjct: 1377 QVE-LNYQPD 1385


>ref|XP_002985715.1| hypothetical protein SELMODRAFT_446351 [Selaginella moellendorffii]
            gi|300146624|gb|EFJ13293.1| hypothetical protein
            SELMODRAFT_446351 [Selaginella moellendorffii]
          Length = 1393

 Score =  456 bits (1174), Expect = e-125
 Identities = 239/362 (66%), Positives = 281/362 (77%), Gaps = 3/362 (0%)
 Frame = +2

Query: 2    LETCITRYHLKKXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNITLGVPRIKEII 181
            L TCI RYH KK                EPGTQMTLKTFHFAGVASMNITLGVPRIKEII
Sbjct: 1027 LNTCIGRYHRKKLDPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEII 1086

Query: 182  NGAKNISTPIITATLECDNDVKSARIVKGCIEKTVLGEVAKSMKIVLTSRYASIVVTLDM 361
            N +K ISTPIITA L  +NDVK+ARIVKG IEKT LG+VAKS+KIVL    A + + LDM
Sbjct: 1087 NASKKISTPIITAKLVSENDVKAARIVKGRIEKTALGDVAKSIKIVLRPGQAFVSIKLDM 1146

Query: 362  ERIQASQLRISAHSVKQSILQHPRTK---LKPQHVEILNDQKLRIHPPNADRSKLHFELH 532
            +RI + QL I A +V +++L+ P+ K   LK QHV++ +D+ + +  P +DR K+ F LH
Sbjct: 1147 DRIYSLQLDIRAETVAEAVLKFPKIKSMKLKEQHVKVNDDRSISLTTPESDRKKMLFALH 1206

Query: 533  SYKAMLPKVIVKGISSVERAVINKNKGKYNLLVEGKNLRAVMGTPGVDGCKTTSNHIIEV 712
            S + MLPKVIVKGI +VERAVIN+ KGKYNLLVEG NL+AVMGT GVDG +TTSNHI E 
Sbjct: 1207 SLQNMLPKVIVKGIPTVERAVINQEKGKYNLLVEGTNLKAVMGTEGVDGRETTSNHIFET 1266

Query: 713  QETLGIEAARKCIIDEIQYTMASHGMSIDIRHMMLLADLMTYKGEVLGITRFGIQKMKES 892
             E LGIEAAR  II EIQYTM SHGMSID RHMMLLAD+MTY+GE+LGITRFG+ KMK+S
Sbjct: 1267 VEVLGIEAARNGIIKEIQYTMGSHGMSIDQRHMMLLADVMTYRGEILGITRFGMAKMKDS 1326

Query: 893  VLMLASFEKTADHLFNAACNGRDDKIEGVSECIIMGIPMQIGTGILKVRQRIEQVPMLNY 1072
            VLMLASFEKT DHLF A+ +GR D+IEGVSECIIMGIPM +GTG+ KVRQ++ ++P L Y
Sbjct: 1327 VLMLASFEKTTDHLFAASVHGRTDQIEGVSECIIMGIPMPLGTGLFKVRQKVGRIPKLIY 1386

Query: 1073 AP 1078
             P
Sbjct: 1387 GP 1388


>ref|XP_006828249.1| hypothetical protein AMTR_s00023p00196820 [Amborella trichopoda]
            gi|548832896|gb|ERM95665.1| hypothetical protein
            AMTR_s00023p00196820 [Amborella trichopoda]
          Length = 1383

 Score =  451 bits (1159), Expect = e-124
 Identities = 246/365 (67%), Positives = 281/365 (76%), Gaps = 5/365 (1%)
 Frame = +2

Query: 2    LETCITRYHLKKXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNITLGVPRIKEII 181
            LETCI+RYHLK+                EPGTQMTLKTFHFAGVASMNITLGVPRIKEI+
Sbjct: 1016 LETCISRYHLKRIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIL 1075

Query: 182  NGAKNISTPIITATLECDNDVKSARIVKGCIEKTVLGEVAKSMKIVLTSRYASIVVTLDM 361
              +K ISTPIITATL CDND KSARIVKG IEKT+LGEVAK++KI +T   ASI +TLDM
Sbjct: 1076 GASKKISTPIITATLVCDNDEKSARIVKGRIEKTLLGEVAKTVKISVTPTQASINITLDM 1135

Query: 362  ERIQASQLRISAHSVKQSILQH-----PRTKLKPQHVEILNDQKLRIHPPNADRSKLHFE 526
            +RI+A Q+ I A +V  SI ++      RTKLK +    L D KL+I  P   R ++ + 
Sbjct: 1136 KRIEALQMAIDAKTVADSISENLKAKVSRTKLKVKPTFTLPD-KLKILLPEIGRKEVLYS 1194

Query: 527  LHSYKAMLPKVIVKGISSVERAVINKNKGKYNLLVEGKNLRAVMGTPGVDGCKTTSNHII 706
            LH  +++LPK+IVKGI +VERAVIN  KGK NLLVEG NL AVMGTPGVDG  TTSNHI+
Sbjct: 1195 LHLLQSLLPKIIVKGIPTVERAVINNVKGKLNLLVEGTNLLAVMGTPGVDGRNTTSNHIV 1254

Query: 707  EVQETLGIEAARKCIIDEIQYTMASHGMSIDIRHMMLLADLMTYKGEVLGITRFGIQKMK 886
            EV+ TLGIEAARK IIDEIQYTM SHGMSID+RHMMLLADLMT++G VLGI RFGI KMK
Sbjct: 1255 EVEGTLGIEAARKSIIDEIQYTMKSHGMSIDLRHMMLLADLMTFRGLVLGIQRFGITKMK 1314

Query: 887  ESVLMLASFEKTADHLFNAACNGRDDKIEGVSECIIMGIPMQIGTGILKVRQRIEQVPML 1066
            ESVLMLASFE+TAD LF+A   GR D I GVSECIIMG+PMQIGTGIL V+QR EQ+  L
Sbjct: 1315 ESVLMLASFERTADILFDATTRGRVDTIAGVSECIIMGVPMQIGTGILSVQQRPEQLAKL 1374

Query: 1067 NYAPD 1081
             Y PD
Sbjct: 1375 TYGPD 1379


>ref|XP_003574945.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
            [Brachypodium distachyon]
          Length = 1392

 Score =  447 bits (1149), Expect = e-123
 Identities = 237/367 (64%), Positives = 281/367 (76%), Gaps = 7/367 (1%)
 Frame = +2

Query: 2    LETCITRYHLKKXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNITLGVPRIKEII 181
            L+TC++RYH K                 EPGTQMTLKTFHFAGVASMN+TLGVPRIKEII
Sbjct: 1022 LDTCLSRYHSKIIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEII 1081

Query: 182  NGAKNISTPIITATLECDNDVKSARIVKGCIEKTVLGEVAKSMKIVLTSRYASIVVTLDM 361
            N AKNISTPIITA L    D+  A  VK  +EK VLGEVA  +KIVL S   ++VV LDM
Sbjct: 1082 NAAKNISTPIITAELLSGQDMSFAVKVKRYVEKVVLGEVAAVIKIVLKSSQPNLVVKLDM 1141

Query: 362  ERIQAS-QLRISAHSVKQSILQHPRTKLKPQHVEILNDQKLRIHPPNADRSKLHFELHSY 538
            +RI+A   + IS+ SV+QSI++HP+ KLK +HV +++  KLRI+P   D+SKL  ELH+ 
Sbjct: 1142 QRIEAQGYMGISSDSVQQSIIRHPKIKLKSEHVRVIDGAKLRIYPTGTDKSKLQLELHTL 1201

Query: 539  KAMLPKVIVKGISSVERAVIN------KNKGKYNLLVEGKNLRAVMGTPGVDGCKTTSNH 700
            K+MLPKVIVKGI +VERAV+N      K   +YNLLVEG NL  V+GTPGVD  KT SNH
Sbjct: 1202 KSMLPKVIVKGIPTVERAVVNPVKRPDKTLDRYNLLVEGTNLLKVLGTPGVDAKKTKSNH 1261

Query: 701  IIEVQETLGIEAARKCIIDEIQYTMASHGMSIDIRHMMLLADLMTYKGEVLGITRFGIQK 880
            I+EV +TLGIEAAR+ IIDEI+YT  S+ M ID RHMMLLADLMTYKGEVLGITRFGI K
Sbjct: 1262 IMEVNQTLGIEAARRSIIDEIRYTFESNNMIIDQRHMMLLADLMTYKGEVLGITRFGIVK 1321

Query: 881  MKESVLMLASFEKTADHLFNAACNGRDDKIEGVSECIIMGIPMQIGTGILKVRQRIEQVP 1060
            MK SVLMLASFEKT +HLFNA+ +GR+D+IEGVSECIIMGIPM +G+GILKVRQR++ +P
Sbjct: 1322 MKSSVLMLASFEKTLEHLFNASYSGREDEIEGVSECIIMGIPMTLGSGILKVRQRLDHLP 1381

Query: 1061 MLNYAPD 1081
              NY PD
Sbjct: 1382 EFNYQPD 1388


>ref|XP_002300065.1| DNA-directed RNA polymerase family protein [Populus trichocarpa]
            gi|222847323|gb|EEE84870.1| DNA-directed RNA polymerase
            family protein [Populus trichocarpa]
          Length = 1394

 Score =  445 bits (1144), Expect = e-122
 Identities = 237/358 (66%), Positives = 279/358 (77%), Gaps = 10/358 (2%)
 Frame = +2

Query: 2    LETCITRYHLKKXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNITLGVPRIKEII 181
            L+TC+ RY  K+                EPGTQMTLKTFHFAGVASMNIT GVPRIKEII
Sbjct: 1038 LKTCLDRYVWKRIEPGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEII 1097

Query: 182  NGAKNISTPIITATLECDNDVKSARIVKGCIEKTVLGEVAKSMKIVLTSRYASIVVTLDM 361
            NGAK ISTPIIT  LE +++V +ARI+KG I+KTVLG+VAKS+KIV+TSR AS+ VTLDM
Sbjct: 1098 NGAKRISTPIITVELEHNSNVNAARIIKGRIQKTVLGQVAKSIKIVMTSRSASVKVTLDM 1157

Query: 362  ERIQASQLRISAHSVKQSILQHPRTKLKPQHVEILNDQKLRIHPPNADRSKLHFELHSYK 541
            + I+ +QL + A+ V++ IL+ P+ K K Q + +L D KL + P   DR+KLHFELHS K
Sbjct: 1158 KTIREAQLSLDANIVRELILETPKIKRKLQRINVLEDGKLEVFP-GGDRNKLHFELHSLK 1216

Query: 542  AMLPKVIVKGISSVERAVINKNK----------GKYNLLVEGKNLRAVMGTPGVDGCKTT 691
             MLP V+VKGI +VER VI + K           KYN+ VEG  L+AVMGT GVDG KT 
Sbjct: 1217 NMLPAVVVKGIKTVERVVIAQKKLDDAENDQGGPKYNMFVEGMGLQAVMGTEGVDGRKTK 1276

Query: 692  SNHIIEVQETLGIEAARKCIIDEIQYTMASHGMSIDIRHMMLLADLMTYKGEVLGITRFG 871
            SNHIIEVQETLGIEAARKCIIDEI+ TM SHGMSIDIRHMMLLAD+MT +G VLGITRFG
Sbjct: 1277 SNHIIEVQETLGIEAARKCIIDEIKGTMESHGMSIDIRHMMLLADVMTSRGVVLGITRFG 1336

Query: 872  IQKMKESVLMLASFEKTADHLFNAACNGRDDKIEGVSECIIMGIPMQIGTGILKVRQR 1045
            IQKM +SVLMLASFEKT+DHLFNA+  G+DDKIEGVSECIIMGIP+ IGTG+LK++QR
Sbjct: 1337 IQKMDKSVLMLASFEKTSDHLFNASVKGKDDKIEGVSECIIMGIPVAIGTGVLKIQQR 1394