BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia23_contig00014213
         (780 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japoni...   114   7e-26
gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japoni...   114   7e-26
dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]       114   7e-26
gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Ja...   115   9e-26
gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japoni...   115   9e-26
emb|CAD39981.1| OSJNBa0032B23.3 [Oryza sativa Japonica Group]         113   2e-25
gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sa...   112   3e-25
gb|AAX96717.1| retrotransposon protein, putative, Ty3-gypsy sub-...   116   5e-25
gb|AAX95495.1| Retrotransposon gag protein, putative [Oryza sati...   116   5e-25
gb|AAM94350.1| gag-pol polyprotein [Zea mays]                         114   8e-25
gb|ADP20179.1| gag-pol polyprotein [Silene latifolia]                 109   1e-24
gb|AAM74438.1|AC123594_21 Putative retroelement [Oryza sativa Ja...   110   1e-24
gb|ABB47285.1| retrotransposon protein, putative, Ty3-gypsy subc...   110   1e-24
gb|AAM08551.1|AC092749_4 Putative retroelement [Oryza sativa Jap...   110   1e-24
emb|CAE02465.2| OSJNBa0042D13.18 [Oryza sativa Japonica Group]        114   2e-24
gb|ABA98082.1| retrotransposon protein, putative, Ty3-gypsy subc...    79   2e-23
gb|ADP20180.1| mutant gag-pol polyprotein [Pisum sativum]             109   2e-23
emb|CAH66606.1| H0211A12.9 [Oryza sativa Indica Group]                110   2e-23
emb|CAE02411.2| OSJNBa0024J22.19 [Oryza sativa Japonica Group]        110   2e-23
emb|CAE01890.2| OSJNBa0035O13.13 [Oryza sativa Japonica Group]        111   2e-23

>gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
          Length = 1619

 Score =  114 bits (286), Expect(2) = 7e-26
 Identities = 78/187 (41%), Positives = 91/187 (48%), Gaps = 34/187 (18%)
 Frame = -3

Query: 460  RGI*KQIELQVGASLPCKAASRLSPFSNEEIRRQVQELLSKG--RESLSPCSTPA*LAQK 287
            RGI  QI+L  GASLP +A  R +P   +EI+RQVQELL KG  RESLSPCS P  L  K
Sbjct: 628  RGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQELLDKGYVRESLSPCSVPVLLVPK 687

Query: 286  EAAGVCRWAIR*GSM*LSLQ*CQRWMTLWTACRERVTFQSLCW*WRHPIRR--------- 134
            +                           W  C +     ++   +RHPI R         
Sbjct: 688  KDGS------------------------WRMCVDCRAINNITIRYRHPIPRLDDMLDELS 723

Query: 133  -----------------------EGRENFNTKDGLYEWLVMPFGLTNAPSTFMRLMNEVL 23
                                   E +  F TK GLYEWLVMPFGLTNAPSTFMRLMNEVL
Sbjct: 724  GSLVFSKIDLCSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVL 783

Query: 22   RPWIGKF 2
            R +IG+F
Sbjct: 784  RAFIGRF 790



 Score = 29.6 bits (65), Expect(2) = 7e-26
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
 Frame = -1

Query: 564 ERLFRKEDREVQM------FLQHSSDLMPKELPAG*PPKIRG 457
           E LF  ED  + +       LQ  +D+ PKE+P G PP IRG
Sbjct: 589 ETLFPIEDTPISLPPPVTNLLQEYADIFPKEVPPGLPP-IRG 629


>gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|91795218|gb|ABE60890.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1616

 Score =  114 bits (286), Expect(2) = 7e-26
 Identities = 78/187 (41%), Positives = 91/187 (48%), Gaps = 34/187 (18%)
 Frame = -3

Query: 460  RGI*KQIELQVGASLPCKAASRLSPFSNEEIRRQVQELLSKG--RESLSPCSTPA*LAQK 287
            RGI  QI+L  GASLP +A  R +P   +EI+RQVQELL KG  RESLSPCS P  L  K
Sbjct: 732  RGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQELLDKGYVRESLSPCSVPVLLVPK 791

Query: 286  EAAGVCRWAIR*GSM*LSLQ*CQRWMTLWTACRERVTFQSLCW*WRHPIRR--------- 134
            +                           W  C +     ++   +RHPI R         
Sbjct: 792  KDGS------------------------WRMCVDCRAINNITIRYRHPIPRLDDMLDELS 827

Query: 133  -----------------------EGRENFNTKDGLYEWLVMPFGLTNAPSTFMRLMNEVL 23
                                   E +  F TK GLYEWLVMPFGLTNAPSTFMRLMNEVL
Sbjct: 828  GSLVFSKIDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVL 887

Query: 22   RPWIGKF 2
            R +IG+F
Sbjct: 888  RAFIGRF 894



 Score = 29.6 bits (65), Expect(2) = 7e-26
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
 Frame = -1

Query: 564 ERLFRKEDREVQM------FLQHSSDLMPKELPAG*PPKIRG 457
           E LF  ED  + +       LQ  +D+ PKE+P G PP IRG
Sbjct: 693 ETLFPIEDTPISLPPPVTNLLQEYADIFPKEVPPGLPP-IRG 733


>dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]
          Length = 1587

 Score =  114 bits (286), Expect(2) = 7e-26
 Identities = 78/187 (41%), Positives = 91/187 (48%), Gaps = 34/187 (18%)
 Frame = -3

Query: 460  RGI*KQIELQVGASLPCKAASRLSPFSNEEIRRQVQELLSKG--RESLSPCSTPA*LAQK 287
            RGI  QI+L  GASLP +A  R +P   +EI+RQVQELL KG  RESLSPCS P  L  K
Sbjct: 732  RGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQELLDKGYVRESLSPCSVPVLLVPK 791

Query: 286  EAAGVCRWAIR*GSM*LSLQ*CQRWMTLWTACRERVTFQSLCW*WRHPIRR--------- 134
            +                           W  C +     ++   +RHPI R         
Sbjct: 792  KDGS------------------------WRMCVDCRAINNITIRYRHPIPRLDDMLDELS 827

Query: 133  -----------------------EGRENFNTKDGLYEWLVMPFGLTNAPSTFMRLMNEVL 23
                                   E +  F TK GLYEWLVMPFGLTNAPSTFMRLMNEVL
Sbjct: 828  GSLVFSKIDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVL 887

Query: 22   RPWIGKF 2
            R +IG+F
Sbjct: 888  RAFIGRF 894



 Score = 29.6 bits (65), Expect(2) = 7e-26
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
 Frame = -1

Query: 564 ERLFRKEDREVQM------FLQHSSDLMPKELPAG*PPKIRG 457
           E LF  ED  + +       LQ  +D+ PKE+P G PP IRG
Sbjct: 693 ETLFPIEDTPISLRPPVTNLLQEYADIFPKEVPPGLPP-IRG 733


>gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Japonica Group]
            gi|31431012|gb|AAP52850.1| retrotransposon protein,
            putative, Ty3-gypsy subclass [Oryza sativa Japonica
            Group]
          Length = 2447

 Score =  115 bits (289), Expect(2) = 9e-26
 Identities = 78/187 (41%), Positives = 91/187 (48%), Gaps = 34/187 (18%)
 Frame = -3

Query: 460  RGI*KQIELQVGASLPCKAASRLSPFSNEEIRRQVQELLSKG--RESLSPCSTPA*LAQK 287
            RGI  QI+L  GASLP +A  R +P   +EI+RQV ELL KG  RESLSPC+ P  L  K
Sbjct: 704  RGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVHELLDKGYVRESLSPCAVPVILVPK 763

Query: 286  EAAGVCRWAIR*GSM*LSLQ*CQRWMTLWTACRERVTFQSLCW*WRHPIRR--------- 134
            +                           W  C +     ++   +RHPI R         
Sbjct: 764  KDGS------------------------WRMCVDCRAINNITIRYRHPIPRLDDMLDELS 799

Query: 133  -----------------------EGRENFNTKDGLYEWLVMPFGLTNAPSTFMRLMNEVL 23
                                   E +  F TK GLYEWLVMPFGLTNAPSTFMRLMNEVL
Sbjct: 800  GSIVFSKVDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVL 859

Query: 22   RPWIGKF 2
            RP+IGKF
Sbjct: 860  RPFIGKF 866



 Score = 28.1 bits (61), Expect(2) = 9e-26
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -1

Query: 534 VQMFLQHSSDLMPKELPAG*PPKIRG 457
           V   LQ  SD+ PKE+P G PP +RG
Sbjct: 681 VANILQEYSDVFPKEVPPGLPP-VRG 705


>gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
          Length = 1619

 Score =  115 bits (289), Expect(2) = 9e-26
 Identities = 78/187 (41%), Positives = 91/187 (48%), Gaps = 34/187 (18%)
 Frame = -3

Query: 460  RGI*KQIELQVGASLPCKAASRLSPFSNEEIRRQVQELLSKG--RESLSPCSTPA*LAQK 287
            RGI  QI+L  GASLP +A  R +P   +EI+RQV ELL KG  RESLSPC+ P  L  K
Sbjct: 683  RGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVHELLDKGYVRESLSPCAVPVILVPK 742

Query: 286  EAAGVCRWAIR*GSM*LSLQ*CQRWMTLWTACRERVTFQSLCW*WRHPIRR--------- 134
            +                           W  C +     ++   +RHPI R         
Sbjct: 743  KDGS------------------------WRMCVDCRAINNITIRYRHPIPRLDDMLDELS 778

Query: 133  -----------------------EGRENFNTKDGLYEWLVMPFGLTNAPSTFMRLMNEVL 23
                                   E +  F TK GLYEWLVMPFGLTNAPSTFMRLMNEVL
Sbjct: 779  GSIVFSKVELRSGYHQIHMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVL 838

Query: 22   RPWIGKF 2
            RP+IGKF
Sbjct: 839  RPFIGKF 845



 Score = 28.1 bits (61), Expect(2) = 9e-26
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -1

Query: 534 VQMFLQHSSDLMPKELPAG*PPKIRG 457
           V   LQ  SD+ PKE+P G PP +RG
Sbjct: 660 VANILQEYSDVFPKEVPPGLPP-VRG 684


>emb|CAD39981.1| OSJNBa0032B23.3 [Oryza sativa Japonica Group]
          Length = 1170

 Score =  113 bits (283), Expect(2) = 2e-25
 Identities = 77/187 (41%), Positives = 91/187 (48%), Gaps = 34/187 (18%)
 Frame = -3

Query: 460 RGI*KQIELQVGASLPCKAASRLSPFSNEEIRRQVQELLSKG--RESLSPCSTPA*LAQK 287
           RGI  QI+L  GASLP +A  R +P   +EI+RQ+QELL KG  RESLSPCS P  L  K
Sbjct: 365 RGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQMQELLDKGYVRESLSPCSVPVLLVPK 424

Query: 286 EAAGVCRWAIR*GSM*LSLQ*CQRWMTLWTACRERVTFQSLCW*WRHPIRR--------- 134
           +                           W  C +     ++   +RHPI R         
Sbjct: 425 KDGS------------------------WRMCVDCRAINNITIRYRHPIPRLDDMLDELS 460

Query: 133 -----------------------EGRENFNTKDGLYEWLVMPFGLTNAPSTFMRLMNEVL 23
                                  E +  F TK GLYEWLVMPFGLTNAPSTFMRLMNEVL
Sbjct: 461 GSLVFYKIDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVL 520

Query: 22  RPWIGKF 2
           R +IG+F
Sbjct: 521 RAFIGRF 527



 Score = 29.6 bits (65), Expect(2) = 2e-25
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
 Frame = -1

Query: 564 ERLFRKEDREVQM------FLQHSSDLMPKELPAG*PPKIRG 457
           E LF  ED  + +       LQ  +D+ PKE+P G PP IRG
Sbjct: 326 ETLFPIEDTPISLPPPVTNLLQEYADIFPKEVPPGLPP-IRG 366


>gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|15217296|gb|AAK92640.1|AC079634_1 Putative
            retroelement [Oryza sativa Japonica Group]
            gi|31431373|gb|AAP53161.1| retrotransposon protein,
            putative, Ty3-gypsy subclass [Oryza sativa Japonica
            Group]
          Length = 1708

 Score =  112 bits (281), Expect(2) = 3e-25
 Identities = 77/187 (41%), Positives = 91/187 (48%), Gaps = 34/187 (18%)
 Frame = -3

Query: 460  RGI*KQIELQVGASLPCKAASRLSPFSNEEIRRQVQELLSKG--RESLSPCSTPA*LAQK 287
            RGI  QI+L  GASLP +A  R +P   +EI+RQVQELL KG  RESLSPCS P  L  K
Sbjct: 732  RGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQELLDKGYVRESLSPCSIPVLLVPK 791

Query: 286  EAAGVCRWAIR*GSM*LSLQ*CQRWMTLWTACRERVTFQSLCW*WRHPIRR--------- 134
            +                           W  C +     ++   +RHPI R         
Sbjct: 792  KDGS------------------------WRMCVDCRAINNITIRYRHPIPRLDDMLDELS 827

Query: 133  -----------------------EGRENFNTKDGLYEWLVMPFGLTNAPSTFMRLMNEVL 23
                                   E +  F TK GLYEWLVMPFGLTNAPSTF+RLMNEVL
Sbjct: 828  GSLVFSKIDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFIRLMNEVL 887

Query: 22   RPWIGKF 2
            R +IG+F
Sbjct: 888  RAFIGRF 894



 Score = 29.6 bits (65), Expect(2) = 3e-25
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
 Frame = -1

Query: 564 ERLFRKEDREVQM------FLQHSSDLMPKELPAG*PPKIRG 457
           E LF  ED  + +       LQ  +D+ PKE+P G PP IRG
Sbjct: 693 ETLFPIEDTPISLPPPVTNLLQEYADIFPKEVPPGLPP-IRG 733


>gb|AAX96717.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
            Japonica Group] gi|108864301|gb|ABA93040.2|
            retrotransposon protein, putative, Ty3-gypsy subclass
            [Oryza sativa Japonica Group]
          Length = 1748

 Score =  116 bits (291), Expect(2) = 5e-25
 Identities = 78/187 (41%), Positives = 91/187 (48%), Gaps = 34/187 (18%)
 Frame = -3

Query: 460  RGI*KQIELQVGASLPCKAASRLSPFSNEEIRRQVQELLSKG--RESLSPCSTPA*LAQK 287
            RGI  QI+L  GASLP +A  R +P   +EI+RQV ELL KG  RESLSPC+ P  L  K
Sbjct: 1046 RGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVHELLDKGYVRESLSPCAVPVILVPK 1105

Query: 286  EAAGVCRWAIR*GSM*LSLQ*CQRWMTLWTACRERVTFQSLCW*WRHPIRR--------- 134
            +                           W  C +     ++   +RHPI R         
Sbjct: 1106 KDGS------------------------WRMCVDCRAINNITIRYRHPIPRLDDMLDELS 1141

Query: 133  -----------------------EGRENFNTKDGLYEWLVMPFGLTNAPSTFMRLMNEVL 23
                                   E +  F TK GLYEWLVMPFGLTNAPSTFMRLMNEVL
Sbjct: 1142 GSIVFSKVDLRSGYHQIRMKLGDEWKTTFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVL 1201

Query: 22   RPWIGKF 2
            RP+IGKF
Sbjct: 1202 RPFIGKF 1208



 Score = 25.0 bits (53), Expect(2) = 5e-25
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -1

Query: 510  SDLMPKELPAG*PPKIRG 457
            SD+ PKE+P G PP +RG
Sbjct: 1031 SDVFPKEVPPGLPP-VRG 1047


>gb|AAX95495.1| Retrotransposon gag protein, putative [Oryza sativa Japonica Group]
          Length = 1739

 Score =  116 bits (291), Expect(2) = 5e-25
 Identities = 78/187 (41%), Positives = 91/187 (48%), Gaps = 34/187 (18%)
 Frame = -3

Query: 460  RGI*KQIELQVGASLPCKAASRLSPFSNEEIRRQVQELLSKG--RESLSPCSTPA*LAQK 287
            RGI  QI+L  GASLP +A  R +P   +EI+RQV ELL KG  RESLSPC+ P  L  K
Sbjct: 1037 RGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVHELLDKGYVRESLSPCAVPVILVPK 1096

Query: 286  EAAGVCRWAIR*GSM*LSLQ*CQRWMTLWTACRERVTFQSLCW*WRHPIRR--------- 134
            +                           W  C +     ++   +RHPI R         
Sbjct: 1097 KDGS------------------------WRMCVDCRAINNITIRYRHPIPRLDDMLDELS 1132

Query: 133  -----------------------EGRENFNTKDGLYEWLVMPFGLTNAPSTFMRLMNEVL 23
                                   E +  F TK GLYEWLVMPFGLTNAPSTFMRLMNEVL
Sbjct: 1133 GSIVFSKVDLRSGYHQIRMKLGDEWKTTFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVL 1192

Query: 22   RPWIGKF 2
            RP+IGKF
Sbjct: 1193 RPFIGKF 1199



 Score = 25.0 bits (53), Expect(2) = 5e-25
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -1

Query: 510  SDLMPKELPAG*PPKIRG 457
            SD+ PKE+P G PP +RG
Sbjct: 1022 SDVFPKEVPPGLPP-VRG 1038


>gb|AAM94350.1| gag-pol polyprotein [Zea mays]
          Length = 1618

 Score =  114 bits (285), Expect(2) = 8e-25
 Identities = 78/187 (41%), Positives = 91/187 (48%), Gaps = 34/187 (18%)
 Frame = -3

Query: 460  RGI*KQIELQVGASLPCKAASRLSPFSNEEIRRQVQELLSKG--RESLSPCSTPA*LAQK 287
            RGI  QI+L  GASLP +A  R +P   +EI+RQVQELL KG  RESLSPC+ P  L  K
Sbjct: 707  RGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQELLDKGYVRESLSPCAVPVILVPK 766

Query: 286  EAAGVCRWAIR*GSM*LSLQ*CQRWMTLWTACRERVTFQSLCW*WRHPIRR--------- 134
            +                           W  C +     ++   +RHPI R         
Sbjct: 767  KDG------------------------TWRMCVDCRAINNITIRYRHPIPRLDDMLDELS 802

Query: 133  -----------------------EGRENFNTKDGLYEWLVMPFGLTNAPSTFMRLMNEVL 23
                                   E +  F TK GLYEWLVMPFGLTNAPSTFMRLMNEVL
Sbjct: 803  GAIVFSKVDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVL 862

Query: 22   RPWIGKF 2
            R +IGKF
Sbjct: 863  RAFIGKF 869



 Score = 26.6 bits (57), Expect(2) = 8e-25
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -1

Query: 522 LQHSSDLMPKELPAG*PPKIRG 457
           LQ  SD+ P E+P G PP IRG
Sbjct: 688 LQEYSDVFPSEIPEGLPP-IRG 708


>gb|ADP20179.1| gag-pol polyprotein [Silene latifolia]
          Length = 1475

 Score =  109 bits (272), Expect(2) = 1e-24
 Identities = 72/187 (38%), Positives = 91/187 (48%), Gaps = 34/187 (18%)
 Frame = -3

Query: 460  RGI*KQIELQVGASLPCKAASRLSPFSNEEIRRQVQELLSKG--RESLSPCSTPA*LAQK 287
            RGI  QI+   GA+LP KAA R  P + +E+++Q+ EL+SKG  RESLSPCS PA L  K
Sbjct: 590  RGIEHQIDFIPGATLPNKAAYRSDPKATQELQQQIGELVSKGFVRESLSPCSVPALLVPK 649

Query: 286  EAAGVCRWAIR*GSM*LSLQ*CQRWMTLWTACRERVTFQSLCW*WRHPIRR--------- 134
            +                           W  C +     ++   +R PI R         
Sbjct: 650  KDGS------------------------WRMCTDSRAINNITIKYRFPIPRLDDILDELS 685

Query: 133  -----------------------EGRENFNTKDGLYEWLVMPFGLTNAPSTFMRLMNEVL 23
                                   E +  F TK GLYEWLVMPFGL+NAPSTFMRLM EVL
Sbjct: 686  GAQLFSKIDLRQGYHQVRIKEGDEWKTAFKTKHGLYEWLVMPFGLSNAPSTFMRLMTEVL 745

Query: 22   RPWIGKF 2
            RP++G+F
Sbjct: 746  RPYLGRF 752



 Score = 30.8 bits (68), Expect(2) = 1e-24
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = -1

Query: 540 REVQMFLQHSSDLMPKELPAG*PPKIRG 457
           +EVQ  LQ   D+ P ELP+G PP +RG
Sbjct: 565 KEVQELLQSYEDVFPNELPSGLPP-LRG 591


>gb|AAM74438.1|AC123594_21 Putative retroelement [Oryza sativa Japonica Group]
          Length = 1450

 Score =  110 bits (275), Expect(2) = 1e-24
 Identities = 76/187 (40%), Positives = 90/187 (48%), Gaps = 34/187 (18%)
 Frame = -3

Query: 460  RGI*KQIELQVGASLPCKAASRLSPFSNEEIRRQVQELLSKG--RESLSPCSTPA*LAQK 287
            RGI  QI+L  GASLP +A  R +P   +EI+RQVQELL KG  RESLSPC+ P  L  K
Sbjct: 639  RGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQELLDKGYVRESLSPCAVPVLLVPK 698

Query: 286  EAAGVCRWAIR*GSM*LSLQ*CQRWMTLWTACRERVTFQSLCW*WRHPIRR--------- 134
            +                           W  C +     ++   +RHPI R         
Sbjct: 699  KDGS------------------------WRMCVDCRAIDNIIIRYRHPIPRLDDMLDELS 734

Query: 133  -----------------------EGRENFNTKDGLYEWLVMPFGLTNAPSTFMRLMNEVL 23
                                   E +  F TK GLYEWLVMPFGLTNAPSTFMRLMNEVL
Sbjct: 735  GSLVFSKIDLRSGYHQIRMKLGDEWKAAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVL 794

Query: 22   RPWIGKF 2
              +IG+F
Sbjct: 795  CAFIGRF 801



 Score = 29.6 bits (65), Expect(2) = 1e-24
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
 Frame = -1

Query: 564 ERLFRKEDREVQM------FLQHSSDLMPKELPAG*PPKIRG 457
           E LF  ED  + +       LQ  +D+ PKE+P G PP IRG
Sbjct: 600 ETLFPIEDTPISLPPPVTNLLQEYADIFPKEVPLGLPP-IRG 640


>gb|ABB47285.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1392

 Score =  110 bits (275), Expect(2) = 1e-24
 Identities = 76/187 (40%), Positives = 90/187 (48%), Gaps = 34/187 (18%)
 Frame = -3

Query: 460  RGI*KQIELQVGASLPCKAASRLSPFSNEEIRRQVQELLSKG--RESLSPCSTPA*LAQK 287
            RGI  QI+L  GASLP +A  R +P   +EI+RQVQELL KG  RESLSPC+ P  L  K
Sbjct: 581  RGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQELLDKGYVRESLSPCAVPVLLVPK 640

Query: 286  EAAGVCRWAIR*GSM*LSLQ*CQRWMTLWTACRERVTFQSLCW*WRHPIRR--------- 134
            +                           W  C +     ++   +RHPI R         
Sbjct: 641  KDGS------------------------WRMCVDCRAIDNIIIRYRHPIPRLDDMLDELS 676

Query: 133  -----------------------EGRENFNTKDGLYEWLVMPFGLTNAPSTFMRLMNEVL 23
                                   E +  F TK GLYEWLVMPFGLTNAPSTFMRLMNEVL
Sbjct: 677  GSLVFSKIDLRSGYHQIRMKLGDEWKAAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVL 736

Query: 22   RPWIGKF 2
              +IG+F
Sbjct: 737  CAFIGRF 743



 Score = 29.6 bits (65), Expect(2) = 1e-24
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
 Frame = -1

Query: 564 ERLFRKEDREVQM------FLQHSSDLMPKELPAG*PPKIRG 457
           E LF  ED  + +       LQ  +D+ PKE+P G PP IRG
Sbjct: 542 ETLFPIEDTPISLPPPVTNLLQEYADIFPKEVPLGLPP-IRG 582


>gb|AAM08551.1|AC092749_4 Putative retroelement [Oryza sativa Japonica Group]
          Length = 1357

 Score =  110 bits (275), Expect(2) = 1e-24
 Identities = 76/187 (40%), Positives = 90/187 (48%), Gaps = 34/187 (18%)
 Frame = -3

Query: 460  RGI*KQIELQVGASLPCKAASRLSPFSNEEIRRQVQELLSKG--RESLSPCSTPA*LAQK 287
            RGI  QI+L  GASLP +A  R +P   +EI+RQVQELL KG  RESLSPC+ P  L  K
Sbjct: 546  RGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQELLDKGYVRESLSPCAVPVLLVPK 605

Query: 286  EAAGVCRWAIR*GSM*LSLQ*CQRWMTLWTACRERVTFQSLCW*WRHPIRR--------- 134
            +                           W  C +     ++   +RHPI R         
Sbjct: 606  KDGS------------------------WRMCVDCRAIDNIIIRYRHPIPRLDDMLDELS 641

Query: 133  -----------------------EGRENFNTKDGLYEWLVMPFGLTNAPSTFMRLMNEVL 23
                                   E +  F TK GLYEWLVMPFGLTNAPSTFMRLMNEVL
Sbjct: 642  GSLVFSKIDLRSGYHQIRMKLGDEWKAAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVL 701

Query: 22   RPWIGKF 2
              +IG+F
Sbjct: 702  CAFIGRF 708



 Score = 29.6 bits (65), Expect(2) = 1e-24
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
 Frame = -1

Query: 564 ERLFRKEDREVQM------FLQHSSDLMPKELPAG*PPKIRG 457
           E LF  ED  + +       LQ  +D+ PKE+P G PP IRG
Sbjct: 507 ETLFPIEDTPISLPPPVTNLLQEYADIFPKEVPLGLPP-IRG 547


>emb|CAE02465.2| OSJNBa0042D13.18 [Oryza sativa Japonica Group]
          Length = 2241

 Score =  114 bits (286), Expect(2) = 2e-24
 Identities = 78/187 (41%), Positives = 90/187 (48%), Gaps = 34/187 (18%)
 Frame = -3

Query: 460  RGI*KQIELQVGASLPCKAASRLSPFSNEEIRRQVQELLSKG--RESLSPCSTPA*LAQK 287
            RGI  QI+L  GASLP +A  R +P   +EI+RQV ELL KG  RESLSPC+ P  L  K
Sbjct: 798  RGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVHELLDKGYVRESLSPCAVPVILVPK 857

Query: 286  EAAGVCRWAIR*GSM*LSLQ*CQRWMTLWTACRERVTFQSLCW*WRHPIRR--------- 134
            +                           W  C +     +    +RHPI R         
Sbjct: 858  KDGS------------------------WRMCVDCRAINNNTIRYRHPIPRLDDMLDELS 893

Query: 133  -----------------------EGRENFNTKDGLYEWLVMPFGLTNAPSTFMRLMNEVL 23
                                   E +  F TK GLYEWLVMPFGLTNAPSTFMRLMNEVL
Sbjct: 894  GSIVFSKVDLRSGYHQIRMKLGDEWKTTFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVL 953

Query: 22   RPWIGKF 2
            RP+IGKF
Sbjct: 954  RPFIGKF 960



 Score = 25.0 bits (53), Expect(2) = 2e-24
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 534 VQMFLQHSSDLMPKELPAG*PPKIRG 457
           V   LQ  SD+ PKE+P G  P +RG
Sbjct: 775 VANILQEYSDVFPKEVPPG-LPLVRG 799


>gb|ABA98082.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 817

 Score = 79.0 bits (193), Expect(4) = 2e-23
 Identities = 37/44 (84%), Positives = 39/44 (88%)
 Frame = -3

Query: 133 EGRENFNTKDGLYEWLVMPFGLTNAPSTFMRLMNEVLRPWIGKF 2
           E +  F TK GLYEWLVMPFGLTNAPSTFMRLMNEVLRP+IGKF
Sbjct: 156 EWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRPFIGKF 199



 Score = 44.3 bits (103), Expect(4) = 2e-23
 Identities = 24/42 (57%), Positives = 29/42 (69%)
 Frame = -3

Query: 460 RGI*KQIELQVGASLPCKAASRLSPFSNEEIRRQVQELLSKG 335
           RGI  QI+L  GASLP +A  R +P   +EI+RQV ELL KG
Sbjct: 67  RGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVHELLDKG 108



 Score = 26.6 bits (57), Expect(4) = 2e-23
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -2

Query: 224 MPTMDDIMDCLSGACYFSK 168
           +P +DDI+D LSG+  FSK
Sbjct: 121 IPRLDDILDELSGSIVFSK 139



 Score = 26.2 bits (56), Expect(4) = 2e-23
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -1

Query: 519 QHSSDLMPKELPAG*PPKIRG 457
           Q  SD+ PKE+P G PP +RG
Sbjct: 49  QEYSDVFPKEVPPGLPP-VRG 68


>gb|ADP20180.1| mutant gag-pol polyprotein [Pisum sativum]
          Length = 1004

 Score =  109 bits (272), Expect(2) = 2e-23
 Identities = 73/187 (39%), Positives = 89/187 (47%), Gaps = 34/187 (18%)
 Frame = -3

Query: 460  RGI*KQIELQVGASLPCKAASRLSPFSNEEIRRQVQELLSKG--RESLSPCSTPA*LAQK 287
            RGI   I+L  GASLP + A R +P   +EI+RQV EL+SKG  RESLSPC+ P  L  K
Sbjct: 594  RGIEHHIDLNPGASLPNRPAYRSNPQQTQEIQRQVAELISKGWVRESLSPCAVPIILVPK 653

Query: 286  EAAGVCRWAIR*GSM*LSLQ*CQRWMTLWTACRERVTFQSLCW*WRHPIRR--------- 134
            +                           W  C +     ++   +RHPI R         
Sbjct: 654  KDGS------------------------WRMCTDCRAISNITIKYRHPIPRLDDLLDELF 689

Query: 133  -----------------------EGRENFNTKDGLYEWLVMPFGLTNAPSTFMRLMNEVL 23
                                   E +  F TK GLYEW+VMPFGLTNAPSTFMRLMN VL
Sbjct: 690  GACLFSKIDLKSGYHQIRIREGDEWKTAFKTKFGLYEWMVMPFGLTNAPSTFMRLMNHVL 749

Query: 22   RPWIGKF 2
            R ++GKF
Sbjct: 750  REFLGKF 756



 Score = 26.9 bits (58), Expect(2) = 2e-23
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -1

Query: 534 VQMFLQHSSDLMPKELPAG*PPKIRG 457
           ++  LQ   +L P+E+P+G PP IRG
Sbjct: 571 IESLLQEFKELFPEEVPSGLPP-IRG 595


>emb|CAH66606.1| H0211A12.9 [Oryza sativa Indica Group]
          Length = 1667

 Score =  110 bits (276), Expect(2) = 2e-23
 Identities = 76/187 (40%), Positives = 90/187 (48%), Gaps = 34/187 (18%)
 Frame = -3

Query: 460  RGI*KQIELQVGASLPCKAASRLSPFSNEEIRRQVQELLSKG--RESLSPCSTPA*LAQK 287
            RGI  QI+L  GASLP +A  R +P   +EI+RQV ELL KG  RESLSPC+    L  K
Sbjct: 627  RGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVHELLDKGYVRESLSPCAVLVILVPK 686

Query: 286  EAAGVCRWAIR*GSM*LSLQ*CQRWMTLWTACRERVTFQSLCW*WRHPIRR--------- 134
            +                           W  C +     ++   +RHPI R         
Sbjct: 687  KDGS------------------------WRMCVDCRAINNITIRYRHPIPRLDDMLDELS 722

Query: 133  -----------------------EGRENFNTKDGLYEWLVMPFGLTNAPSTFMRLMNEVL 23
                                   E +  F TK GLYEWLVMPFGLTNAP+TFMRLMNEVL
Sbjct: 723  GSIVFSKVDLRSGYHQIRMNLGDEWKTAFKTKFGLYEWLVMPFGLTNAPTTFMRLMNEVL 782

Query: 22   RPWIGKF 2
            RP+IGKF
Sbjct: 783  RPFIGKF 789



 Score = 25.0 bits (53), Expect(2) = 2e-23
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -1

Query: 510 SDLMPKELPAG*PPKIRG 457
           SD+ PKE+P G PP +RG
Sbjct: 612 SDVFPKEVPPGLPP-VRG 628


>emb|CAE02411.2| OSJNBa0024J22.19 [Oryza sativa Japonica Group]
          Length = 1667

 Score =  110 bits (276), Expect(2) = 2e-23
 Identities = 76/187 (40%), Positives = 90/187 (48%), Gaps = 34/187 (18%)
 Frame = -3

Query: 460  RGI*KQIELQVGASLPCKAASRLSPFSNEEIRRQVQELLSKG--RESLSPCSTPA*LAQK 287
            RGI  QI+L  GASLP +A  R +P   +EI+RQV ELL KG  RESLSPC+    L  K
Sbjct: 627  RGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVHELLDKGYVRESLSPCAVLVILVPK 686

Query: 286  EAAGVCRWAIR*GSM*LSLQ*CQRWMTLWTACRERVTFQSLCW*WRHPIRR--------- 134
            +                           W  C +     ++   +RHPI R         
Sbjct: 687  KDGS------------------------WRMCVDCRAINNITIRYRHPIPRLDDMLDELS 722

Query: 133  -----------------------EGRENFNTKDGLYEWLVMPFGLTNAPSTFMRLMNEVL 23
                                   E +  F TK GLYEWLVMPFGLTNAP+TFMRLMNEVL
Sbjct: 723  GSIVFSKVDLRSGYHQIRMNLGDEWKTAFKTKFGLYEWLVMPFGLTNAPTTFMRLMNEVL 782

Query: 22   RPWIGKF 2
            RP+IGKF
Sbjct: 783  RPFIGKF 789



 Score = 25.0 bits (53), Expect(2) = 2e-23
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -1

Query: 510 SDLMPKELPAG*PPKIRG 457
           SD+ PKE+P G PP +RG
Sbjct: 612 SDVFPKEVPPGLPP-VRG 628


>emb|CAE01890.2| OSJNBa0035O13.13 [Oryza sativa Japonica Group]
          Length = 1021

 Score =  111 bits (277), Expect(2) = 2e-23
 Identities = 76/187 (40%), Positives = 90/187 (48%), Gaps = 34/187 (18%)
 Frame = -3

Query: 460 RGI*KQIELQVGASLPCKAASRLSPFSNEEIRRQVQELLSKG--RESLSPCSTPA*LAQK 287
           RGI  QI+L  GASLP +A  R +    +EI+RQVQELL KG  RESLSPC+ P  L  K
Sbjct: 510 RGIEHQIDLIPGASLPNRAPYRTNSGETKEIQRQVQELLDKGYVRESLSPCAVPVLLVPK 569

Query: 286 EAAGVCRWAIR*GSM*LSLQ*CQRWMTLWTACRERVTFQSLCW*WRHPIRR--------- 134
           +                           W  C +     ++   +RHPI R         
Sbjct: 570 KDGS------------------------WRMCVDCRAINNITIRYRHPIPRLDDMLDELS 605

Query: 133 -----------------------EGRENFNTKDGLYEWLVMPFGLTNAPSTFMRLMNEVL 23
                                  E +  F TK GLYEWLVMPFGLTNAPSTFMRLMNEVL
Sbjct: 606 GSLVFSKIDLRSGYHQIRMKLGDEWKTTFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVL 665

Query: 22  RPWIGKF 2
           R +IG+F
Sbjct: 666 RAFIGRF 672



 Score = 24.6 bits (52), Expect(2) = 2e-23
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -1

Query: 510 SDLMPKELPAG*PPKIRG 457
           +D+ PKE+P G PP IRG
Sbjct: 495 ADIFPKEVPPGLPP-IRG 511