BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia23_contig00009283
         (627 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABV01917.1| putative RNA-dependent RNA polymerase [Tobacco bu...   181   1e-43
gb|AAB82543.1| putative RNA dependent RNA polymerase [carrot red...   170   3e-40
ref|NP_624318.1| putative RNA dependent RNA polymerase [Carrot r...   167   2e-39
ref|NP_660172.1| hypothetical protein [Beet western yellows ST9 ...   162   6e-38
ref|YP_002302259.1| RNA-dependent RNA polymerase [Carrot mottle ...   145   1e-32
ref|NP_044732.1| replicase [Galinsoga mosaic virus] gi|2213432|e...   142   8e-32
ref|NP_054006.2| RNA-dependent RNA polymerase [Carrot mottle mim...   142   8e-32
gb|AAB81639.1| RNA-dependent RNA polymerase [Carrot mottle mimic...   142   8e-32
gb|ACJ03572.1| RNA-dependent RNA polymerase [Carrot mottle mimic...   142   8e-32
ref|NP_733848.1| RNA-dependent RNA polymerase [Tobacco bushy top...   141   2e-31
emb|CAX62133.1| RNA-dependent RNA polymerase [Tobacco bushy top ...   141   2e-31
emb|CAR85733.1| RNA-dependent RNA polymerase [Tobacco bushy top ...   140   2e-31
emb|CAE17661.2| RNA-dependent RNA polymerase [Tobacco bushy top ...   140   3e-31
emb|CBH71321.1| hypothetical protein [Tobacco bushy top virus]        140   4e-31
gb|AAG02571.1| RNA-dependent RNA polymerase [tobacco mottle virus]    139   5e-31
gb|ACJ03575.1| RNA-dependent RNA polymerase [Carrot mottle mimic...   139   7e-31
gb|AGG23390.1| RNA-dependent RNA polymerase [Citrus yellow vein-...   139   9e-31
emb|CAR85737.1| RNA-dependent RNA polymerase [Tobacco bushy top ...   138   2e-30
ref|NP_056825.2| RNA-dependent RNA polymerase [Tobacco necrosis ...   134   2e-29
ref|NP_619714.1| RNA-dependent RNA polymerase [Groundnut rosette...   133   4e-29

>gb|ABV01917.1| putative RNA-dependent RNA polymerase [Tobacco bushy top
            disease-associated RNA]
          Length = 788

 Score =  181 bits (460), Expect = 1e-43
 Identities = 97/210 (46%), Positives = 134/210 (63%), Gaps = 2/210 (0%)
 Frame = -3

Query: 625  LNYRERGSMLLETWQLYSNPACLMLDASRFDLHVSVGALKFTDEIYRRSLLPESSVLLER 446
            LNY  RG MLL+ W+ + NP  + LDASRFDLHVSV AL++T  +Y  +   +   LL +
Sbjct: 467  LNYLRRGEMLLKKWESFVNPVAICLDASRFDLHVSVEALQYTHILYYTAFGRDP--LLMQ 524

Query: 445  FMRERHDTHGLAVCADGSHRYKKRGGRCSGDVDTSLGNVAIMLGVTYKLLESLQLP-VSV 269
             +  R +T G+A+C +GS+RYKK+GGRCSGD DTSLGNV IML +TY LLE L  P + V
Sbjct: 525  LLENRLETRGVAICKEGSYRYKKKGGRCSGDNDTSLGNVIIMLSITYHLLEGLPFPHIEV 584

Query: 268  VNDGDDQLFIGDADTVNTIAAVIEQHFRDAGFILACEPVVYDPSDIEFCQTKPVR-DQSG 92
             ND DDQ+ I + +    +   +E  F   GF L  E  VY+   I+FCQT+PVR     
Sbjct: 585  ANDXDDQVLIVEKENELALLEAVEPCFAKFGFRLTVEQPVYEFERIDFCQTRPVRLSPDV 644

Query: 91   WIMVRKPQNSITRDLATFIDVRQPTVRANM 2
              MVR P+ ++T+DL +FI + +  ++ +M
Sbjct: 645  TTMVRHPRLAMTKDLTSFIPIERGLMKYHM 674


>gb|AAB82543.1| putative RNA dependent RNA polymerase [carrot red leaf luteovirus
            associated RNA]
          Length = 757

 Score =  170 bits (431), Expect = 3e-40
 Identities = 87/203 (42%), Positives = 128/203 (63%), Gaps = 2/203 (0%)
 Frame = -3

Query: 625  LNYRERGSMLLETWQLYSNPACLMLDASRFDLHVSVGALKFTDEIYRRSLLPESSVLLER 446
            +NYR R   LLE WQ + +P  + LDASRFDLHVSV ALKFTD+IY  +        L+ 
Sbjct: 435  MNYRTRARALLEKWQSFDSPVAVCLDASRFDLHVSVDALKFTDQIYLSAFTGIDRSELKE 494

Query: 445  FMRERHDTHGLAVCADGSHRYKKRGGRCSGDVDTSLGNVAIMLGVTYKLLESLQ-LPVSV 269
             +R RH T G A C +G+  Y+K GGRCSGD DTSLGNV+IML +T  + E L+ + + V
Sbjct: 495  ILRNRHKTTGFATCKEGTFHYEKVGGRCSGDSDTSLGNVSIMLAITRVICEELKGIHIEV 554

Query: 268  VNDGDDQLFIGDADTVNTIAAVIEQHFRDAGFILACEPVVYDPSDIEFCQTKPVRDQSGW 89
             NDGDDQ+ + + + ++ +   +   F   GF +  E  V++   I+FCQT+P+    G 
Sbjct: 555  ANDGDDQVLMVETNQLDNLIKELSPTFARFGFRVKVEDPVWEFERIDFCQTRPIFLSPGE 614

Query: 88   -IMVRKPQNSITRDLATFIDVRQ 23
             +M R P  S+++D+A+F+++ +
Sbjct: 615  PLMCRYPMQSMSKDVASFLNIER 637


>ref|NP_624318.1| putative RNA dependent RNA polymerase [Carrot red leaf luteovirus
            associated RNA] gi|2582376|gb|AAB82546.1| putative RNA
            dependent RNA polymerase [carrot red leaf luteovirus
            associated RNA]
          Length = 757

 Score =  167 bits (423), Expect = 2e-39
 Identities = 87/203 (42%), Positives = 127/203 (62%), Gaps = 2/203 (0%)
 Frame = -3

Query: 625  LNYRERGSMLLETWQLYSNPACLMLDASRFDLHVSVGALKFTDEIYRRSLLPESSVLLER 446
            +NYR R   LLE WQ + +P  + LDASRFDLHVSV ALKFTD+IY  +        L+ 
Sbjct: 435  MNYRTRARALLEKWQSFDSPVAVCLDASRFDLHVSVDALKFTDQIYLSAFTGIDRSELKE 494

Query: 445  FMRERHDTHGLAVCADGSHRYKKRGGRCSGDVDTSLGNVAIMLGVTYKLLESLQ-LPVSV 269
             +R RH T G A   +G+  Y+K GGRCSGD DTSLGNV+IML +T  + E L+ + + V
Sbjct: 495  ILRNRHKTTGFATFKEGTFHYEKVGGRCSGDSDTSLGNVSIMLAITRVICEGLKGIHIEV 554

Query: 268  VNDGDDQLFIGDADTVNTIAAVIEQHFRDAGFILACEPVVYDPSDIEFCQTKPVRDQSGW 89
             NDGDDQ+ + + + ++ +   +   F   GF +  E  V++   I+FCQT+P+    G 
Sbjct: 555  ANDGDDQVLMVETNQLDNLVKELSPTFARFGFRVKVEDPVWEFERIDFCQTRPIFLSPGE 614

Query: 88   -IMVRKPQNSITRDLATFIDVRQ 23
             IM R P  S+++D+A+F+++ +
Sbjct: 615  PIMCRYPMQSMSKDVASFLNIER 637


>ref|NP_660172.1| hypothetical protein [Beet western yellows ST9 associated virus]
           gi|289512|gb|AAA42863.1| 5' end of ORF 3 is
           undetermined; putative [Beet western yellows ST9
           associated virus]
          Length = 342

 Score =  162 bits (411), Expect = 6e-38
 Identities = 90/212 (42%), Positives = 134/212 (63%), Gaps = 4/212 (1%)
 Frame = -3

Query: 625 LNYRERGSMLLETWQLYSNPACLMLDASRFDLHVSVGALKFTDEIYRRSLL--PESSVLL 452
           LNY  RG+ + E W+ +++P  + LDASRFDLHVS  AL+ T  +Y  ++   P+ + +L
Sbjct: 21  LNYLRRGNYMKEKWESFNDPVAICLDASRFDLHVSEDALQHTHLLYTTAIGNDPQLAYIL 80

Query: 451 ERFMRERHDTHGLAVCADGSHRYKKRGGRCSGDVDTSLGNVAIMLGVTYKLLESLQLP-V 275
           E     R  T G+   +DG+ RY K+GGRCSGD DTSLGNV IML +TY   E  ++P +
Sbjct: 81  EN----RLVTDGVGWSSDGAFRYHKKGGRCSGDNDTSLGNVIIMLSITYAFCEESEIPHI 136

Query: 274 SVVNDGDDQLFIGDADTVNTIAAVIEQHFRDAGFILACEPVVYDPSDIEFCQTKPVR-DQ 98
            + NDGDDQ+ + + + ++T+   IE  FR  GF+L  E  VY+   I+FCQT+PV+   
Sbjct: 137 EITNDGDDQVIMVEREHMHTVLQ-IEDTFRKFGFLLKVEDPVYELERIDFCQTRPVQLTP 195

Query: 97  SGWIMVRKPQNSITRDLATFIDVRQPTVRANM 2
               MVR P+ ++T+DL TFI + +  ++ +M
Sbjct: 196 DVCTMVRHPRLAMTKDLTTFIPIERGRLKYHM 227


>ref|YP_002302259.1| RNA-dependent RNA polymerase [Carrot mottle virus]
            gi|209972132|gb|ACJ03580.1| RNA-dependent RNA polymerase
            [Carrot mottle virus]
          Length = 870

 Score =  145 bits (365), Expect = 1e-32
 Identities = 77/201 (38%), Positives = 123/201 (61%), Gaps = 1/201 (0%)
 Frame = -3

Query: 622  NYRERGSMLLETWQLYSNPACLMLDASRFDLHVSVGALKFTDEIYRRSLL-PESSVLLER 446
            N  + G ++ + W+ + +P C+ LDASRFD HVSV ALKFT ++Y+R +  PE     +R
Sbjct: 522  NAFQTGDIIAKKWRSFRDPVCVGLDASRFDQHVSVAALKFTHKVYKRFVRDPE----FDR 577

Query: 445  FMRERHDTHGLAVCADGSHRYKKRGGRCSGDVDTSLGNVAIMLGVTYKLLESLQLPVSVV 266
             ++  +   G     DG  +YK +G R SGD+DT+LGN  +M+ +T +L + L++P  ++
Sbjct: 578  LLQLMYTNKGRGTAKDGVVKYKVKGCRMSGDMDTALGNCVLMVPMTRELCKRLEIPHELM 637

Query: 265  NDGDDQLFIGDADTVNTIAAVIEQHFRDAGFILACEPVVYDPSDIEFCQTKPVRDQSGWI 86
            ++GDD + I D + ++     ++ +F+D GF +  E  V+    IEFCQT+PV D + W 
Sbjct: 638  DNGDDCIVIFDKEHLSKFQRAVKPYFKDLGFSMKVEAPVFKLEQIEFCQTQPVFDGTQWR 697

Query: 85   MVRKPQNSITRDLATFIDVRQ 23
            MVR+  NSI +DL + I   Q
Sbjct: 698  MVRQ-VNSIAKDLCSVISWEQ 717


>ref|NP_044732.1| replicase [Galinsoga mosaic virus] gi|2213432|emb|CAA73863.1|
           replicase [Galinsoga mosaic virus]
          Length = 729

 Score =  142 bits (358), Expect = 8e-32
 Identities = 75/196 (38%), Positives = 115/196 (58%)
 Frame = -3

Query: 613 ERGSMLLETWQLYSNPACLMLDASRFDLHVSVGALKFTDEIYRRSLLPESSVLLERFMRE 434
           E+ S+  E W  +S P  + LDASRFD HVSV ALK+  ++Y  +   + +  L++ ++ 
Sbjct: 414 EQASIAREKWDRFSKPVAIGLDASRFDQHVSVAALKWEHKLYHHAFNHDKT--LKKLLKW 471

Query: 433 RHDTHGLAVCADGSHRYKKRGGRCSGDVDTSLGNVAIMLGVTYKLLESLQLPVSVVNDGD 254
           +    G A  +DG  +YKK G R SGD++TSLGN  IM G+ Y LL +  +   ++N+GD
Sbjct: 472 QIHNEGTAFASDGCIKYKKTGCRMSGDMNTSLGNCLIMCGMVYDLLVTHDIDAELLNNGD 531

Query: 253 DQLFIGDADTVNTIAAVIEQHFRDAGFILACEPVVYDPSDIEFCQTKPVRDQSGWIMVRK 74
           D + I +      +  VI Q+FR  GF +  E  V+    +EFCQT+PV     WIMVRK
Sbjct: 532 DCVLICERSEEAHLLEVIPQYFRQYGFTMEVEKPVHIFEKLEFCQTQPVYVDGKWIMVRK 591

Query: 73  PQNSITRDLATFIDVR 26
           P  ++++DL   + ++
Sbjct: 592 PNPAMSKDLTCLLPIQ 607


>ref|NP_054006.2| RNA-dependent RNA polymerase [Carrot mottle mimic virus]
          Length = 882

 Score =  142 bits (358), Expect = 8e-32
 Identities = 78/200 (39%), Positives = 115/200 (57%)
 Frame = -3

Query: 622  NYRERGSMLLETWQLYSNPACLMLDASRFDLHVSVGALKFTDEIYRRSLLPESSVLLERF 443
            N  + G ++ + W  + NP C+ LDASRFD HVSV ALKFT  +Y+R     SS      
Sbjct: 541  NAFQTGEIIRKKWDSFRNPVCVGLDASRFDQHVSVEALKFTHSVYKRF---NSSKEFVDL 597

Query: 442  MRERHDTHGLAVCADGSHRYKKRGGRCSGDVDTSLGNVAIMLGVTYKLLESLQLPVSVVN 263
            + + +   GL  C DG  +YK +G R SGD+DT+LGN  +M+ +T  L   L +P  +++
Sbjct: 598  LNQMYVNRGLGTCKDGLVKYKVKGCRMSGDMDTALGNCVLMVLMTRNLCLDLSIPHELMD 657

Query: 262  DGDDQLFIGDADTVNTIAAVIEQHFRDAGFILACEPVVYDPSDIEFCQTKPVRDQSGWIM 83
            +GDD + I + + +    A ++ +F   GF +  E  VY    +EFCQT+PV D + W M
Sbjct: 658  NGDDCIVIFEKEHLQRFNAAVKPYFAALGFTMKVEAPVYQFEKVEFCQTQPVFDGTQWRM 717

Query: 82   VRKPQNSITRDLATFIDVRQ 23
            VR+   SI +DL + ID  Q
Sbjct: 718  VRQIP-SIAKDLCSVIDWEQ 736


>gb|AAB81639.1| RNA-dependent RNA polymerase [Carrot mottle mimic virus]
          Length = 569

 Score =  142 bits (358), Expect = 8e-32
 Identities = 78/200 (39%), Positives = 115/200 (57%)
 Frame = -3

Query: 622 NYRERGSMLLETWQLYSNPACLMLDASRFDLHVSVGALKFTDEIYRRSLLPESSVLLERF 443
           N  + G ++ + W  + NP C+ LDASRFD HVSV ALKFT  +Y+R     SS      
Sbjct: 228 NAFQTGEIIRKKWDSFRNPVCVGLDASRFDQHVSVEALKFTHSVYKRF---NSSKEFVDL 284

Query: 442 MRERHDTHGLAVCADGSHRYKKRGGRCSGDVDTSLGNVAIMLGVTYKLLESLQLPVSVVN 263
           + + +   GL  C DG  +YK +G R SGD+DT+LGN  +M+ +T  L   L +P  +++
Sbjct: 285 LNQMYVNRGLGTCKDGLVKYKVKGCRMSGDMDTALGNCVLMVLMTRNLCLDLSIPHELMD 344

Query: 262 DGDDQLFIGDADTVNTIAAVIEQHFRDAGFILACEPVVYDPSDIEFCQTKPVRDQSGWIM 83
           +GDD + I + + +    A ++ +F   GF +  E  VY    +EFCQT+PV D + W M
Sbjct: 345 NGDDCIVIFEKEHLQRFNAAVKPYFAALGFTMKVEAPVYQFEKVEFCQTQPVFDGTQWRM 404

Query: 82  VRKPQNSITRDLATFIDVRQ 23
           VR+   SI +DL + ID  Q
Sbjct: 405 VRQIP-SIAKDLCSVIDWEQ 423


>gb|ACJ03572.1| RNA-dependent RNA polymerase [Carrot mottle mimic virus]
          Length = 882

 Score =  142 bits (358), Expect = 8e-32
 Identities = 78/200 (39%), Positives = 115/200 (57%)
 Frame = -3

Query: 622  NYRERGSMLLETWQLYSNPACLMLDASRFDLHVSVGALKFTDEIYRRSLLPESSVLLERF 443
            N  + G ++ + W  + NP C+ LDASRFD HVSV ALKFT  +Y+R     SS      
Sbjct: 541  NAFQTGEIIRKKWDSFRNPVCVGLDASRFDQHVSVEALKFTHSVYKRF---NSSKEFVDL 597

Query: 442  MRERHDTHGLAVCADGSHRYKKRGGRCSGDVDTSLGNVAIMLGVTYKLLESLQLPVSVVN 263
            + + +   GL  C DG  +YK +G R SGD+DT+LGN  +M+ +T  L   L +P  +++
Sbjct: 598  LNQMYVNRGLGTCKDGLVKYKVKGCRMSGDMDTALGNCVLMVLMTRNLCLDLSIPHELMD 657

Query: 262  DGDDQLFIGDADTVNTIAAVIEQHFRDAGFILACEPVVYDPSDIEFCQTKPVRDQSGWIM 83
            +GDD + I + + +    A ++ +F   GF +  E  VY    +EFCQT+PV D + W M
Sbjct: 658  NGDDCIVIFEKEHLQRFNAAVKPYFAALGFTMKVEAPVYQFEKVEFCQTQPVFDGTQWRM 717

Query: 82   VRKPQNSITRDLATFIDVRQ 23
            VR+   SI +DL + ID  Q
Sbjct: 718  VRQIP-SIAKDLCSVIDWEQ 736


>ref|NP_733848.1| RNA-dependent RNA polymerase [Tobacco bushy top virus]
           gi|24528570|gb|AAN62863.1| RNA-dependent RNA polymerase
           [Tobacco bushy top virus]
          Length = 557

 Score =  141 bits (355), Expect = 2e-31
 Identities = 75/200 (37%), Positives = 116/200 (58%)
 Frame = -3

Query: 622 NYRERGSMLLETWQLYSNPACLMLDASRFDLHVSVGALKFTDEIYRRSLLPESSVLLERF 443
           N  E G ++ + W+ +S+P C+ LDASRFD HVS  AL+FT  +Y+R +       + + 
Sbjct: 206 NAVETGEIVAKKWKCFSDPVCVGLDASRFDQHVSCDALRFTHSVYKRFVKGRE---VNKL 262

Query: 442 MRERHDTHGLAVCADGSHRYKKRGGRCSGDVDTSLGNVAIMLGVTYKLLESLQLPVSVVN 263
           +   +  H L    DG  +Y+  G R SGD+DT+LGN  +M+ +T +L ++L +P  ++N
Sbjct: 263 LSWMYKNHALGSAKDGFVKYEVEGCRMSGDMDTALGNCVLMVLMTRQLCKNLSIPHELMN 322

Query: 262 DGDDQLFIGDADTVNTIAAVIEQHFRDAGFILACEPVVYDPSDIEFCQTKPVRDQSGWIM 83
           +GDD + I D   ++T    +E  FR+ GF +  E  VY    ++FCQT+PV D   W M
Sbjct: 323 NGDDCIVIFDRQYLSTFQDAVEPWFRELGFTMKVEEPVYHLERVDFCQTRPVYDGKKWRM 382

Query: 82  VRKPQNSITRDLATFIDVRQ 23
           VR   +SI +D  + ID  Q
Sbjct: 383 VRH-ISSIAKDCCSVIDWEQ 401


>emb|CAX62133.1| RNA-dependent RNA polymerase [Tobacco bushy top virus]
          Length = 557

 Score =  141 bits (355), Expect = 2e-31
 Identities = 75/200 (37%), Positives = 116/200 (58%)
 Frame = -3

Query: 622 NYRERGSMLLETWQLYSNPACLMLDASRFDLHVSVGALKFTDEIYRRSLLPESSVLLERF 443
           N  E G ++ + W+ +S+P C+ LDASRFD HVS  AL+FT  +Y+R +       + + 
Sbjct: 206 NAVETGEIVAKKWKCFSDPVCVGLDASRFDQHVSCDALRFTHSVYKRFVKGRE---VNKL 262

Query: 442 MRERHDTHGLAVCADGSHRYKKRGGRCSGDVDTSLGNVAIMLGVTYKLLESLQLPVSVVN 263
           +   +  H L    DG  +Y+  G R SGD+DT+LGN  +M+ +T +L ++L +P  ++N
Sbjct: 263 LSWMYKNHALGSAKDGFVKYEVEGCRMSGDMDTALGNCVLMVLMTRQLCKNLSIPHELMN 322

Query: 262 DGDDQLFIGDADTVNTIAAVIEQHFRDAGFILACEPVVYDPSDIEFCQTKPVRDQSGWIM 83
           +GDD + I D   ++T    +E  FR+ GF +  E  VY    ++FCQT+PV D   W M
Sbjct: 323 NGDDCIVIFDRQYLSTFQDAVEPWFRELGFTMKVEEPVYHLERVDFCQTRPVYDGKKWRM 382

Query: 82  VRKPQNSITRDLATFIDVRQ 23
           VR   +SI +D  + ID  Q
Sbjct: 383 VRH-ISSIAKDCCSVIDWEQ 401


>emb|CAR85733.1| RNA-dependent RNA polymerase [Tobacco bushy top virus]
          Length = 557

 Score =  140 bits (354), Expect = 2e-31
 Identities = 75/200 (37%), Positives = 116/200 (58%)
 Frame = -3

Query: 622 NYRERGSMLLETWQLYSNPACLMLDASRFDLHVSVGALKFTDEIYRRSLLPESSVLLERF 443
           N  E G ++ + W+ +S+P C+ LDASRFD HVS  AL+FT  +Y+R +       + + 
Sbjct: 206 NAVETGEIVAKKWKCFSDPVCVGLDASRFDQHVSCDALQFTHSVYKRFVKGRE---VNKL 262

Query: 442 MRERHDTHGLAVCADGSHRYKKRGGRCSGDVDTSLGNVAIMLGVTYKLLESLQLPVSVVN 263
           +   +  H L    DG  +Y+  G R SGD+DT+LGN  +M+ +T +L ++L +P  ++N
Sbjct: 263 LSWMYKNHALGSAKDGFVKYEVEGCRMSGDMDTALGNCVLMVLMTRQLCKNLSIPHELMN 322

Query: 262 DGDDQLFIGDADTVNTIAAVIEQHFRDAGFILACEPVVYDPSDIEFCQTKPVRDQSGWIM 83
           +GDD + I D   ++T    +E  FR+ GF +  E  VY    ++FCQT+PV D   W M
Sbjct: 323 NGDDCIVIFDRQYLSTFQDAVEPWFRELGFTMKVEEPVYHLERVDFCQTRPVYDGKKWRM 382

Query: 82  VRKPQNSITRDLATFIDVRQ 23
           VR   +SI +D  + ID  Q
Sbjct: 383 VRH-ISSIAKDCCSVIDWEQ 401


>emb|CAE17661.2| RNA-dependent RNA polymerase [Tobacco bushy top virus]
          Length = 502

 Score =  140 bits (353), Expect = 3e-31
 Identities = 75/200 (37%), Positives = 115/200 (57%)
 Frame = -3

Query: 622 NYRERGSMLLETWQLYSNPACLMLDASRFDLHVSVGALKFTDEIYRRSLLPESSVLLERF 443
           N  E G ++ + W+ +S+P C+ LDASRFD HVS  AL+FT  +Y+R +       + + 
Sbjct: 151 NAVETGEIIAKKWKCFSDPVCVGLDASRFDQHVSCDALRFTHSVYKRFVKGRE---VNKL 207

Query: 442 MRERHDTHGLAVCADGSHRYKKRGGRCSGDVDTSLGNVAIMLGVTYKLLESLQLPVSVVN 263
           +   +  H L    DG  +Y+  G R SGD+DT+LGN  +M+ +T +L ++L +P  ++N
Sbjct: 208 LSWMYKNHALGSAKDGFVKYEVEGCRMSGDMDTALGNCVLMVLMTRQLCKNLSIPHELMN 267

Query: 262 DGDDQLFIGDADTVNTIAAVIEQHFRDAGFILACEPVVYDPSDIEFCQTKPVRDQSGWIM 83
           +GDD + I D   + T    +E  FR+ GF +  E  VY    ++FCQT+PV D   W M
Sbjct: 268 NGDDCIVIFDRQYLPTFQDTVEPWFRELGFTMKVEEPVYHLERVDFCQTRPVYDGKKWRM 327

Query: 82  VRKPQNSITRDLATFIDVRQ 23
           VR   +SI +D  + ID  Q
Sbjct: 328 VRH-ISSIAKDCCSVIDWEQ 346


>emb|CBH71321.1| hypothetical protein [Tobacco bushy top virus]
          Length = 557

 Score =  140 bits (352), Expect = 4e-31
 Identities = 74/200 (37%), Positives = 116/200 (58%)
 Frame = -3

Query: 622 NYRERGSMLLETWQLYSNPACLMLDASRFDLHVSVGALKFTDEIYRRSLLPESSVLLERF 443
           N  E G ++ + W+ +S+P C+ LDASRFD HVS  AL+FT  +Y+R +       + + 
Sbjct: 206 NAVETGEIVAKKWKCFSDPVCVGLDASRFDQHVSCDALRFTHSVYKRFVKGRE---VNKL 262

Query: 442 MRERHDTHGLAVCADGSHRYKKRGGRCSGDVDTSLGNVAIMLGVTYKLLESLQLPVSVVN 263
           +   +  H L    DG  +Y+  G R SGD+DT+LGN  +M+ +T +L ++L +P  ++N
Sbjct: 263 LSWMYKNHALGSAKDGFVKYEVEGCRMSGDMDTALGNCVLMVLMTRQLCKNLSIPHELMN 322

Query: 262 DGDDQLFIGDADTVNTIAAVIEQHFRDAGFILACEPVVYDPSDIEFCQTKPVRDQSGWIM 83
           +GDD + I D   ++T    +E  F++ GF +  E  VY    ++FCQT+PV D   W M
Sbjct: 323 NGDDCIVIFDRQYLSTFQDAVEPWFKELGFTMKVEEPVYHLERVDFCQTRPVYDGKKWRM 382

Query: 82  VRKPQNSITRDLATFIDVRQ 23
           VR   +SI +D  + ID  Q
Sbjct: 383 VRH-ISSIAKDCCSVIDWEQ 401


>gb|AAG02571.1| RNA-dependent RNA polymerase [tobacco mottle virus]
          Length = 361

 Score =  139 bits (351), Expect = 5e-31
 Identities = 79/203 (38%), Positives = 116/203 (57%), Gaps = 1/203 (0%)
 Frame = -3

Query: 622 NYRERGSMLLETWQLYSNPACLMLDASRFDLHVSVGALKFTDEIYRRSLL-PESSVLLER 446
           N  E G ++ + WQ++ +P C+ LDA RFD H+S+ ALKFT  IYR+ +   E S LL++
Sbjct: 12  NAVETGEIIAKKWQMFKHPVCVGLDAKRFDQHISMPALKFTHGIYRKFIKNAEFSNLLDK 71

Query: 445 FMRERHDTHGLAVCADGSHRYKKRGGRCSGDVDTSLGNVAIMLGVTYKLLESLQLPVSVV 266
            +      HG+    DG  +YK RG R SGD+DT+LGN  IM+ +T  L   L +P  ++
Sbjct: 72  MLIN----HGVGTAKDGRVKYKVRGCRMSGDMDTALGNCTIMVLMTRNLCLKLNIPHELM 127

Query: 265 NDGDDQLFIGDADTVNTIAAVIEQHFRDAGFILACEPVVYDPSDIEFCQTKPVRDQSGWI 86
           N+GDD + + D   +    + ++ +F+  GF +  E   Y    +EFCQT PV D   W 
Sbjct: 128 NNGDDCIVMFDQQYLQVFNSAVKPYFKSLGFNIKVEEPRYTLERVEFCQTHPVYDGEKWR 187

Query: 85  MVRKPQNSITRDLATFIDVRQPT 17
           MVR    +I +D AT I+  Q T
Sbjct: 188 MVRL-LTAIAKDCATVINWEQLT 209


>gb|ACJ03575.1| RNA-dependent RNA polymerase [Carrot mottle mimic virus]
          Length = 880

 Score =  139 bits (350), Expect = 7e-31
 Identities = 76/200 (38%), Positives = 115/200 (57%)
 Frame = -3

Query: 622  NYRERGSMLLETWQLYSNPACLMLDASRFDLHVSVGALKFTDEIYRRSLLPESSVLLERF 443
            N  + G ++ + W  + NP C+ LDASRFD HVSV ALKFT  +Y+R     SS      
Sbjct: 541  NAFQTGEIIRKKWDSFRNPVCVGLDASRFDQHVSVEALKFTHSVYKRF---NSSKEFVEL 597

Query: 442  MRERHDTHGLAVCADGSHRYKKRGGRCSGDVDTSLGNVAIMLGVTYKLLESLQLPVSVVN 263
            + + +   GL  C DG  +YK +G R SGD+DT+LGN  +M+ +T  L   L +P  +++
Sbjct: 598  LDQMYVNRGLGTCKDGLVKYKVKGCRMSGDMDTALGNCVLMVLMTRNLCLDLSIPHELMD 657

Query: 262  DGDDQLFIGDADTVNTIAAVIEQHFRDAGFILACEPVVYDPSDIEFCQTKPVRDQSGWIM 83
            +GDD + + + + +    A ++ +F   GF +  E  VY    +EFCQT+PV D + W M
Sbjct: 658  NGDDCIVMFEKEHLQKFNAAVKPYFAALGFTMKVEAPVYQFEKVEFCQTQPVFDGTQWRM 717

Query: 82   VRKPQNSITRDLATFIDVRQ 23
            VR+   SI +DL + I+  Q
Sbjct: 718  VRQIP-SIAKDLCSVINWEQ 736


>gb|AGG23390.1| RNA-dependent RNA polymerase [Citrus yellow vein-associated virus]
          Length = 717

 Score =  139 bits (349), Expect = 9e-31
 Identities = 81/193 (41%), Positives = 116/193 (60%)
 Frame = -3

Query: 625 LNYRERGSMLLETWQLYSNPACLMLDASRFDLHVSVGALKFTDEIYRRSLLPESSVLLER 446
           LN  E G+ L   W+ +S+P C+ LDASRFDLHVSVG LKFT ++Y        S  L+R
Sbjct: 392 LNALESGATLRRKWEKFSSPVCVSLDASRFDLHVSVGMLKFTHKLYDYYC---KSPTLQR 448

Query: 445 FMRERHDTHGLAVCADGSHRYKKRGGRCSGDVDTSLGNVAIMLGVTYKLLESLQLPVSVV 266
           +++     HG+A C + S+ Y+  G R SGD+DT+LGN  IM  +T+ +L  L +   + 
Sbjct: 449 YLKWTLRNHGVASCKELSYEYEVVGRRMSGDMDTALGNCVIMSILTWFMLSELGIKHELF 508

Query: 265 NDGDDQLFIGDADTVNTIAAVIEQHFRDAGFILACEPVVYDPSDIEFCQTKPVRDQSGWI 86
           ++GDD LFI ++  V +   VI   F D GF++  E V      IEFCQT PV  + GW+
Sbjct: 509 DNGDDCLFICESHDVPS-PEVITNWFSDFGFVVRLEGVTSVFERIEFCQTSPVWTERGWL 567

Query: 85  MVRKPQNSITRDL 47
           M R  + S+++DL
Sbjct: 568 MCRNIK-SLSKDL 579


>emb|CAR85737.1| RNA-dependent RNA polymerase [Tobacco bushy top virus]
          Length = 557

 Score =  138 bits (347), Expect = 2e-30
 Identities = 74/200 (37%), Positives = 114/200 (57%)
 Frame = -3

Query: 622 NYRERGSMLLETWQLYSNPACLMLDASRFDLHVSVGALKFTDEIYRRSLLPESSVLLERF 443
           N  E G ++ + W+ + +P C+ LDASRFD HVS  AL+FT  IY+R +       + + 
Sbjct: 206 NAVETGEIIAKKWKCFGDPVCVGLDASRFDQHVSCDALRFTHSIYKRFVKGRE---VNKL 262

Query: 442 MRERHDTHGLAVCADGSHRYKKRGGRCSGDVDTSLGNVAIMLGVTYKLLESLQLPVSVVN 263
           +   +  H L    DG  +Y+  G R SGD+DT+LGN  +M+ +T +L ++L +P  ++N
Sbjct: 263 LSWMYRNHALGSAKDGFVKYEVEGCRMSGDMDTALGNCVLMVMMTRQLCKNLSIPHELMN 322

Query: 262 DGDDQLFIGDADTVNTIAAVIEQHFRDAGFILACEPVVYDPSDIEFCQTKPVRDQSGWIM 83
           +GDD + I D   + T    +E  F++ GF +  E  VY    ++FCQT+PV D   W M
Sbjct: 323 NGDDCIVIFDRRHLTTFRNAVEPFFQELGFTMKVEEPVYHLERVDFCQTRPVYDGKKWRM 382

Query: 82  VRKPQNSITRDLATFIDVRQ 23
           VR   +SI +D  + ID  Q
Sbjct: 383 VRH-ISSIAKDCCSVIDWEQ 401


>ref|NP_056825.2| RNA-dependent RNA polymerase [Tobacco necrosis virus A]
           gi|308153486|sp|P22958.2|RDRP_TNVA RecName:
           Full=RNA-directed RNA polymerase; AltName: Full=Protein
           p82; Contains: RecName: Full=Protein p23
           gi|19549335|gb|AAA86434.2| RNA-dependent RNA polymerase
           [Tobacco necrosis virus A]
          Length = 724

 Score =  134 bits (337), Expect = 2e-29
 Identities = 74/193 (38%), Positives = 113/193 (58%)
 Frame = -3

Query: 613 ERGSMLLETWQLYSNPACLMLDASRFDLHVSVGALKFTDEIYRRSLLPESSVLLERFMRE 434
           ++G ++   W  Y NP  + LDASRFD HVSV AL++  E Y R    +    L+  +++
Sbjct: 409 QQGEIMRSKWNKYVNPVAVGLDASRFDQHVSVEALEYEHEFYLRDYPNDKQ--LKWLLKQ 466

Query: 433 RHDTHGLAVCADGSHRYKKRGGRCSGDVDTSLGNVAIMLGVTYKLLESLQLPVSVVNDGD 254
           +    G A  +DG  +YKK+G R SGD++TSLGN  +M  + Y L E L + +S+ N+GD
Sbjct: 467 QLCNVGTAFASDGIIKYKKKGCRMSGDMNTSLGNCILMCAMVYGLKEHLNINLSLANNGD 526

Query: 253 DQLFIGDADTVNTIAAVIEQHFRDAGFILACEPVVYDPSDIEFCQTKPVRDQSGWIMVRK 74
           D + + +   +  + + IE +F+  GF +  E  V     IEFCQT+PV D S +IMVRK
Sbjct: 527 DCVIVCEKADLKKLTSSIEPYFKQFGFKMEVEKPVDIFERIEFCQTQPVFDGSQYIMVRK 586

Query: 73  PQNSITRDLATFI 35
           P    ++D+ + I
Sbjct: 587 PSVVTSKDVTSLI 599


>ref|NP_619714.1| RNA-dependent RNA polymerase [Groundnut rosette virus]
          Length = 839

 Score =  133 bits (335), Expect = 4e-29
 Identities = 73/200 (36%), Positives = 114/200 (57%)
 Frame = -3

Query: 622  NYRERGSMLLETWQLYSNPACLMLDASRFDLHVSVGALKFTDEIYRRSLLPESSVLLERF 443
            N  E G ++ + W++++NP C+ LDASRFD HVSV AL+FT  +YRR +    S   ++ 
Sbjct: 486  NAVETGEIVAKKWKMFANPVCVGLDASRFDQHVSVDALRFTHGVYRRFV---KSSEFDKL 542

Query: 442  MRERHDTHGLAVCADGSHRYKKRGGRCSGDVDTSLGNVAIMLGVTYKLLESLQLPVSVVN 263
            +R  +         DG  +Y   G R SGD+DT+LGN  +M+ +T  LL SL +P  +++
Sbjct: 543  LRWMYTNRCRGAAKDGFVKYTVNGCRMSGDMDTALGNCVLMVLMTRHLLMSLGIPHELLD 602

Query: 262  DGDDQLFIGDADTVNTIAAVIEQHFRDAGFILACEPVVYDPSDIEFCQTKPVRDQSGWIM 83
            +GDD + I D + +      ++ ++ + GF +  E  VY    ++FCQT+PV D   W M
Sbjct: 603  NGDDCIVIMDQEHLAKFNDAVKPYYSNLGFTMKVEEPVYSLERVDFCQTRPVYDGKKWRM 662

Query: 82   VRKPQNSITRDLATFIDVRQ 23
            VR    S+ +D  T I+  Q
Sbjct: 663  VRH-ITSVAKDCCTVINWEQ 681