BLASTX nr result
ID: Akebia23_contig00008460
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Akebia23_contig00008460
(5584 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 605 0.0
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-... 603 0.0
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group] 608 0.0
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc... 601 0.0
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc... 604 0.0
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera] 474 0.0
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis] 639 0.0
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 616 0.0
emb|CAA31653.1| polyprotein [Arabidopsis thaliana] 582 0.0
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group... 625 0.0
emb|CAA20201.1| putative transposable element [Arabidopsis thali... 533 0.0
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group] 612 0.0
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc... 568 0.0
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc... 499 0.0
pir||S23319 hypothetical protein 2 - Arabidopsis thaliana retrot... 486 0.0
dbj|BAD34493.1| Gag-Pol [Ipomoea batatas] 530 0.0
gb|AAK38381.1|AC079028_5 polyprotein, putative [Arabidopsis thal... 501 0.0
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group] 424 0.0
gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Ja... 432 0.0
gb|AAP53216.2| retrotransposon protein, putative, Ty1-copia subc... 432 0.0
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 605 bits (1559), Expect(3) = 0.0
Identities = 316/643 (49%), Positives = 430/643 (66%), Gaps = 4/643 (0%)
Frame = -2
Query: 1917 WGEAVNTAAYLINKCPSVAIGFKTPEEIWTGIPPSYDNLRICGCVAYAHTKEGKLEPRAR 1738
W EAV+TA YLIN+ P I KTP E+W+G Y NL+ GC AY H EGKLEPRA+
Sbjct: 599 WAEAVSTACYLINRGPHTGIQCKTPMEMWSGKAADYSNLKAFGCTAYYHVSEGKLEPRAK 658
Query: 1737 KCMFVSYPEGVKGYKLWCQNKHISKCFISRDVVFKVDEYYLKENGESSTSASSDHDACAG 1558
K +FV Y +GVKG+++W + + +SR+VVF DE L T+ S
Sbjct: 659 KGVFVGYGDGVKGFRIWSPAE--KRVIMSRNVVF--DESPLLRTIVKPTTTSETGSLDKQ 714
Query: 1557 IEVELADRTENQ*DYRLXXXXXXXXXXXXXXXXEALADYQ--LARDRTRRTRVAP-TRYG 1387
+E ++ +N+ D + +D +A+DR RR V P TRYG
Sbjct: 715 VEFQVI---QNESDLKEPEEEDQEPQTETDIPESMPSDIHQSIAQDRPRRVGVRPPTRYG 771
Query: 1386 YADLISFALLTAETLEKNELASYEEACKCKERKEWRQAMQEEMDSLLKNKTWELVDKPVG 1207
+ D++ +AL AE ++ +E ++Y+EA + ++W AM +EM+SL KN+TW+LV +P G
Sbjct: 772 FEDMVGYALQVAEEVDTSEPSTYKEAILSSDSEKWFAAMGDEMESLHKNQTWDLVIQPSG 831
Query: 1206 QRLVSCKWIYKLKEDGSKDGKPRFKARLMARGLTQQAGIDFNEVFSPVVKHTSIRVLLAL 1027
+++++CKW++K KE S ++KAR++ARG Q+ G+D+NE+FSPVV+HTSIRVLLA+
Sbjct: 832 RKIITCKWVFKKKEGISPAEGVKYKARVVARGFNQREGVDYNEIFSPVVRHTSIRVLLAI 891
Query: 1026 VTQFDMELEQMDVKTTFLHGNLDEKIFMSQPKGFVKHGDAGKVCLLKKSLYGLRQSPRQW 847
V ++ELEQ+DVKT FLHG L+E+I+M+QP GF G VC LKKSLYGL+QSPRQW
Sbjct: 892 VAHQNLELEQLDVKTAFLHGELEEEIYMTQPDGFQVPGKENHVCKLKKSLYGLKQSPRQW 951
Query: 846 YLKFDEVMKKNNYLRSDFDSCVYIKWIDGGVGVFLLLYVDDMLIASTNMSEIRMLKTLLS 667
Y +FD M K Y RS +D CVY ++ ++L+LYVDDMLIA+ +I+ LK LLS
Sbjct: 952 YKRFDSYMVKLGYTRSSYDCCVYYNRLNDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLS 1011
Query: 666 KEFEMKDLGVAKRILGMEIKRNRNKGELFISQTSYILKLLNRFGMSQAKAVQTPLACHFK 487
EFEMKDLG A++ILGMEI R+R + +LF+SQ SYI K+L RFGMS +K + TP A +
Sbjct: 1012 AEFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQKVLARFGMSSSKPIDTPSAANIH 1071
Query: 486 LSSALSPSTDDEKADMIQVPYASAIGSIMYSMVCTQPDLAYAASVVSRFMANPGRGHWEA 307
L++ +P +++EK M +VPYASA+GS+MY+MVCT+PDLA+A SVVSRFM PGR HW+A
Sbjct: 1072 LTAMFAPQSEEEKEYMSRVPYASAVGSLMYAMVCTRPDLAHAVSVVSRFMGQPGREHWQA 1131
Query: 306 VKWVFRYLKGTSDYGLCYKRIS*ANEKEKLI-GYVDSDYAGDLDKRRSLTGYVFTLFGCT 130
VK +FRYL+GTSD GL Y + + L+ GY DSDYAGD+D RRS+TGYVFTL G
Sbjct: 1132 VKRIFRYLRGTSDVGLIY-----GGDTQCLVTGYSDSDYAGDVDTRRSMTGYVFTLGGSV 1186
Query: 129 ISWKATLQPVVXXXXXXXXXXXXXXAVKEAIWLQGLLGELGVN 1
+SWKATLQP V A KE IWL+GL+ +LG++
Sbjct: 1187 VSWKATLQPTVTLSTTEAEYMALTEAAKEGIWLKGLVSDLGLH 1229
Score = 380 bits (977), Expect(3) = 0.0
Identities = 184/356 (51%), Positives = 250/356 (70%), Gaps = 7/356 (1%)
Frame = -3
Query: 2966 KNEKDKEVEQVNAIV--EDDYESADVLVVATDKCDKQ--WILDSGCSFHMTPNKDWFETY 2799
K +K E + V+A V ED D+ +VA + W+LDSG S+H+ P ++WF TY
Sbjct: 240 KKKKQSEKQSVSAAVAEEDTNSEEDIALVADEHTHHSDVWVLDSGASYHICPRREWFTTY 299
Query: 2798 KRIDGGKVLLGNNKPCSVIGIGTVRLKTHDGTERLLTEVRHIPKLKRNLISLGMLDHHGY 2619
+++DGG + + N+ C V+G G+++++THDG+ L EVRH+P + +NLISL +LD G+
Sbjct: 300 EQVDGGSISMANSSVCKVVGTGSIKIRTHDGSFCTLNEVRHVPLMTKNLISLSLLDSKGF 359
Query: 2618 TYKGGDGVLKVFKGSMVVMKGVRSNGLYTLQASTVIGIAAIVT---HAKLSKSQLWHRKL 2448
++ G DGVL+V+KGS +++KGV LY LQ STV G A + + H K ++LWH +L
Sbjct: 360 SWSGKDGVLRVWKGSNLILKGVMRGTLYFLQGSTVTGSAHVASSEFHQK-DMTKLWHIRL 418
Query: 2447 GHVSERGLQELQKQGLLYGDKVDKLEFCENCVFGKATRVKFNNSTYTTRETLSYVHFDLW 2268
GH+ ERG+Q L K+ LL G KV LEFCE+CVFGK R KF + + T+ TL Y+H D W
Sbjct: 419 GHMGERGMQILSKEDLLAGHKVKSLEFCEHCVFGKLHRNKFPKAIHRTKGTLDYIHSDCW 478
Query: 2267 GPSRHETLGGGRYFISIIDDCSQKVWVYI*KTKDEAFSKFKAWKKMVEVQTGKKVKKLRT 2088
GP R E+LGG R+F+SIIDD S+ WVY+ K K EAF KFK WK ++E QTGKK+K+LRT
Sbjct: 479 GPCRVESLGGCRFFVSIIDDYSRMTWVYMMKHKSEAFQKFKEWKILMENQTGKKIKRLRT 538
Query: 2087 DNGLEFLNMEFDELCSKEGMVRHKTVKGTPQQNGLAERMNRTLLERVRCMLFSANM 1920
DNGLEF EFD+ C EG+ RH+TV+ TPQQNG+AERMN+TLLER RCML +A +
Sbjct: 539 DNGLEFCWSEFDQFCKDEGIARHRTVRNTPQQNGVAERMNQTLLERARCMLSNAGL 594
Score = 149 bits (377), Expect(3) = 0.0
Identities = 88/228 (38%), Positives = 132/228 (57%), Gaps = 4/228 (1%)
Frame = -2
Query: 3657 EIEKFNGSNDFSLWKMKMLALLGNLGLDEALQGEAKMPTTY*DE--KKKAYNTLILSLSD 3484
+I+KF G N FSLW++KM ALL G L + T ++KA++T++L L+D
Sbjct: 7 KIDKFTGRNSFSLWQIKMRALLKQQGFWAPLSKDKNAVVTPEMAILEEKAHSTIMLCLAD 66
Query: 3483 KILREVTKMKTSAEVWLKLESLYMTKTLSNCLYLKAKFFTFKMPDGKDLQNHIDEFNKLY 3304
++ EV+ +T+A +WLKLESLYMTK+L+N L LK + F +M +G L+ H+++ N L
Sbjct: 67 DVITEVSDEETAAGLWLKLESLYMTKSLTNKLLLKQRLFGLRMAEGTQLREHLEQLNTLL 126
Query: 3303 LDLENIQVEYDDEDKALVLLHSLPKSYETFVDILKHGRETITLDDVVGALSSKELQRK-- 3130
L+L NI V+ +DED AL+LL SLP S+E FV G++T++L++V AL S+EL+ K
Sbjct: 127 LELRNIDVKIEDEDAALILLVSLPMSFENFVQSFIVGKDTVSLEEVRSALHSRELRHKAN 186
Query: 3129 NELKEQTGEGLVVQGRSDRREFXXXXXXXXXXXXXXXXXSYFCHEEGH 2986
+ GL R R+ +Y C E+GH
Sbjct: 187 GTSTDIQPSGLFTSSRKGRKNGGKKNKPMSKGAKPDDVCNY-CKEKGH 233
>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77549942|gb|ABA92739.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1373
Score = 603 bits (1556), Expect(3) = 0.0
Identities = 321/655 (49%), Positives = 424/655 (64%), Gaps = 11/655 (1%)
Frame = -2
Query: 1941 HAIQCQYAWGEAVNTAAYLINKCPSVAIGFKTPEEIWTGIPPSYDNLRICGCVAYAHTKE 1762
HA + W EA +TA YLIN+ PS+ + KTP E+W+G P Y L++ GC AYAH
Sbjct: 605 HARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGTPADYSQLKVFGCTAYAHVDN 664
Query: 1761 GKLEPRARKCMFVSYPEGVKGYKLWCQNKHISKCFISRDVVFK--------VDEYYLKEN 1606
GKLEPRA KC+F+ Y GVKGYKLW N K F+SR VVF + ++ E
Sbjct: 665 GKLEPRAVKCLFLGYGSGVKGYKLW--NPETGKTFMSRSVVFNESVMFTNSLPSEHVPEK 722
Query: 1605 GESSTSASSDH-DACAGIEVELADRTENQ*DYRLXXXXXXXXXXXXXXXXEALADYQLAR 1429
+H D G++VE ++ + + + + +A+
Sbjct: 723 ELQRMHMQVEHVDDDTGVQVEPVHEQDDH-NNDVADDDAHDDVQQTPPILQLEEELPIAQ 781
Query: 1428 DRTRRTRVAPTRY-GYADLISFALLTAETLEK-NELASYEEACKCKERKEWRQAMQEEMD 1255
+++RT P R +L +AL AE +E +E A+Y+EA +C + + W AM EEM
Sbjct: 782 RKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATYKEAVRCGDSENWISAMHEEMQ 841
Query: 1254 SLLKNKTWELVDKPVGQRLVSCKWIYKLKEDGSKDGKPRFKARLMARGLTQQAGIDFNEV 1075
SL KN TWE+V P ++ +SCKWI+K KE S P++KARL+ARG +Q G+D+N+V
Sbjct: 842 SLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVARGYSQIPGVDYNDV 901
Query: 1074 FSPVVKHTSIRVLLALVTQFDMELEQMDVKTTFLHGNLDEKIFMSQPKGFVKHGDAGKVC 895
FSPVVKH+SIR L++V D+ELEQ+DVKT FLHG L+E I+M QP+GF+ G VC
Sbjct: 902 FSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVC 961
Query: 894 LLKKSLYGLRQSPRQWYLKFDEVMKKNNYLRSDFDSCVYIKWIDGGVGVFLLLYVDDMLI 715
LK+SLYGL+QSPRQW +FD M +++ RS +DSCVYIK ++G ++LLLYVDDMLI
Sbjct: 962 KLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHVNGS-PIYLLLYVDDMLI 1020
Query: 714 ASTNMSEIRMLKTLLSKEFEMKDLGVAKRILGMEIKRNRNKGELFISQTSYILKLLNRFG 535
A+ + EI LK LLS EF+MKDLG AK+ILGMEI R+R G LF+SQ +YI K+L RF
Sbjct: 1021 AAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQHNYIKKVLQRFN 1080
Query: 534 MSQAKAVQTPLACHFKLSSALSPSTDDEKADMIQVPYASAIGSIMYSMVCTQPDLAYAAS 355
M AKAV TP+A HFKLS+A PS D E M +VPY+SA+GS+MY+MVC++PDL+YA S
Sbjct: 1081 MQNAKAVSTPIAPHFKLSAAQCPSIDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMS 1140
Query: 354 VVSRFMANPGRGHWEAVKWVFRYLKGTSDYGLCYKRIS*ANEKEKLIGYVDSDYAGDLDK 175
+VSR+M+NPG+ HW AV+W+FRYL+GT+ Y + + LIGYVDSDYA DLD+
Sbjct: 1141 LVSRYMSNPGKEHWRAVQWIFRYLRGTT-----YSCLKFGRTDKGLIGYVDSDYAADLDR 1195
Query: 174 RRSLTGYVFTLFGCTISWKATLQPVVXXXXXXXXXXXXXXAVKEAIWLQGLLGEL 10
RRSLTGYVFT+ C +SW+ATLQ VV A KE IWL+GL EL
Sbjct: 1196 RRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMAICEACKELIWLKGLYAEL 1250
Score = 370 bits (950), Expect(3) = 0.0
Identities = 191/370 (51%), Positives = 252/370 (68%), Gaps = 7/370 (1%)
Frame = -3
Query: 3008 ISVMKKVILEGLKRKNEKDKEVEQVNAIVEDDYESADVLVVATDKC--DKQWILDSGCSF 2835
I KKV + +RKN+KD +V +A DD +S D LVV +WILDS CSF
Sbjct: 242 IDECKKV--QAKERKNKKDGKVSVASAAASDD-DSGDCLVVFAGCVAGHDEWILDSACSF 298
Query: 2834 HMTPNKDWFETYKRIDGGKVL-LGNNKPCSVIGIGTVRLKTHDGTERLLTEVRHIPKLKR 2658
H+ ++WF +YK + G V+ +G++ PC+++GIG+V++KT DG R L VR+IP + R
Sbjct: 299 HICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSR 358
Query: 2657 NLISLGMLDHHGYTYKGGDGVLKVFKGSMVVMKG-VRSNGLYTLQASTVIG---IAAIVT 2490
NLISL LD GY Y G DGVLKV KGS+V +KG V S LY L+ T+ G AA +T
Sbjct: 359 NLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDVNSAKLYVLRGCTLTGSDSAAAAIT 418
Query: 2489 HAKLSKSQLWHRKLGHVSERGLQELQKQGLLYGDKVDKLEFCENCVFGKATRVKFNNSTY 2310
+ + SK+ LWH +LGH+S G+ EL K+ LL G K++FCE+C+FGK RV+FN S +
Sbjct: 419 NDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFCEHCIFGKHKRVQFNTSVH 478
Query: 2309 TTRETLSYVHFDLWGPSRHETLGGGRYFISIIDDCSQKVWVYI*KTKDEAFSKFKAWKKM 2130
TT+ TL YVH DLWGPS+ +LGG RY ++IIDD S+KVW Y K KD+ F+ FK WK M
Sbjct: 479 TTKGTLDYVHADLWGPSKKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFTAFKNWKVM 538
Query: 2129 VEVQTGKKVKKLRTDNGLEFLNMEFDELCSKEGMVRHKTVKGTPQQNGLAERMNRTLLER 1950
+E QT +KVK LRTDNG EF + F++ C +EG+VRH T+ TPQQNG+AERMNRT++ R
Sbjct: 539 IERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNGVAERMNRTIISR 598
Query: 1949 VRCMLFSANM 1920
RCML A M
Sbjct: 599 ARCMLSHARM 608
Score = 127 bits (318), Expect(3) = 0.0
Identities = 79/207 (38%), Positives = 117/207 (56%), Gaps = 9/207 (4%)
Frame = -2
Query: 3663 KQEIEKFNGSNDFSLWKMKMLALLGNL-GLDEALQGEAKMPTTY*DEK----KKAYNTLI 3499
K ++ N FSLW++KM +L DEAL K + E+ +KA +
Sbjct: 2 KFDLPLLNYDTRFSLWQVKMRGILAQTHDYDEALDNFGKRRAEWTAEEIRKDQKALALIQ 61
Query: 3498 LSLSDKILREVTKMKTSAEVWLKLESLYMTKTLSNCLYLKAKFFTFKMPDGKDLQNHIDE 3319
L L + IL+E KTSAE+WLKLES+ M+K L++ + +K K FT KM + + H+ E
Sbjct: 62 LHLHNDILQECLTEKTSAELWLKLESICMSKDLTSKMQMKMKLFTLKMKEEDSVITHMAE 121
Query: 3318 FNKLYLDLENIQVEYDDEDKALVLLHSLPKSYETFVDILKHGRETITLDDVVGALSSKE- 3142
F K+ DL +++V+YDDED L+LL SLP SY F D + R+ +TL +V AL +KE
Sbjct: 122 FKKIVADLVSMEVKYDDEDLGLLLLCSLPNSYANFRDTILLSRDELTLKEVYDALQNKEK 181
Query: 3141 ---LQRKNELKEQTGEGLVVQGRSDRR 3070
+ + + GE L V+GR++ R
Sbjct: 182 MKIMVQNDGSSSSKGEALHVRGRTENR 208
>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
Length = 1335
Score = 608 bits (1568), Expect(3) = 0.0
Identities = 323/655 (49%), Positives = 426/655 (65%), Gaps = 11/655 (1%)
Frame = -2
Query: 1941 HAIQCQYAWGEAVNTAAYLINKCPSVAIGFKTPEEIWTGIPPSYDNLRICGCVAYAHTKE 1762
HA + W EA +TA YLIN+ PS+ + KTP E+W+G P Y L++ GC AYAH
Sbjct: 607 HARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGTPADYSQLKVFGCTAYAHVDN 666
Query: 1761 GKLEPRARKCMFVSYPEGVKGYKLWCQNKHISKCFISRDVVFK--------VDEYYLKEN 1606
GKLEPRA KC+F+ Y GVKGYKLW N K F+SR VVF + ++ E
Sbjct: 667 GKLEPRAVKCLFLGYGSGVKGYKLW--NPETGKTFMSRSVVFNESVMFTNSLPSEHVPEK 724
Query: 1605 GESSTSASSDH-DACAGIEVELADRTENQ*DYRLXXXXXXXXXXXXXXXXEALADYQLAR 1429
+H D G++VE D ++ + + + D +A+
Sbjct: 725 ELQRMHMQVEHVDDDTGVQVEPVDEQDDH-NNDVADDDAHDDVQQTPPILQLEEDLSIAQ 783
Query: 1428 DRTRRTRVAPTRY-GYADLISFALLTAETLEK-NELASYEEACKCKERKEWRQAMQEEMD 1255
+++RT P R +L +AL AE +E +E A+Y+EA +C + + W AM EEM
Sbjct: 784 RKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATYKEAVRCGDSENWISAMHEEMQ 843
Query: 1254 SLLKNKTWELVDKPVGQRLVSCKWIYKLKEDGSKDGKPRFKARLMARGLTQQAGIDFNEV 1075
SL KN TWE+V P ++ +SCKWI+K KE S P++KARL+ARG +Q G+D+N+V
Sbjct: 844 SLEKNSTWEVVPLPKKKKTISCKWIFKRKEALSLSEPPKYKARLVARGYSQIPGVDYNDV 903
Query: 1074 FSPVVKHTSIRVLLALVTQFDMELEQMDVKTTFLHGNLDEKIFMSQPKGFVKHGDAGKVC 895
FSPVVKH+SIR L++V D+ELEQ+DVKT FLHG L+E I+M QP+GF+ G VC
Sbjct: 904 FSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVC 963
Query: 894 LLKKSLYGLRQSPRQWYLKFDEVMKKNNYLRSDFDSCVYIKWIDGGVGVFLLLYVDDMLI 715
LK+SLYGL+QSPRQW +FD M +++ RS +DSCVYIK ++G ++LLLYVDDMLI
Sbjct: 964 KLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHVNGS-PIYLLLYVDDMLI 1022
Query: 714 ASTNMSEIRMLKTLLSKEFEMKDLGVAKRILGMEIKRNRNKGELFISQTSYILKLLNRFG 535
A+ + EI LK LLS EF+MKDLG AK+ILGMEI R+R G LF+SQ +YI K+L RF
Sbjct: 1023 AAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQHNYIKKVLQRFN 1082
Query: 534 MSQAKAVQTPLACHFKLSSALSPSTDDEKADMIQVPYASAIGSIMYSMVCTQPDLAYAAS 355
M AKAV TP+A HFKLS+A PSTD E M +VPY+SA+GS+MY+MVC++PDL+YA S
Sbjct: 1083 MQNAKAVSTPIAPHFKLSAAQCPSTDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMS 1142
Query: 354 VVSRFMANPGRGHWEAVKWVFRYLKGTSDYGLCYKRIS*ANEKEKLIGYVDSDYAGDLDK 175
+VSR+M+NPG+ HW A++W+FRYL+GT+ Y + + LIGYVDSDYA DLD+
Sbjct: 1143 LVSRYMSNPGKEHWRALQWIFRYLRGTT-----YSCLKFGRTDKGLIGYVDSDYAADLDR 1197
Query: 174 RRSLTGYVFTLFGCTISWKATLQPVVXXXXXXXXXXXXXXAVKEAIWLQGLLGEL 10
RRSLTGYVFT+ C +SW+ATLQ VV A KE IWL+GL EL
Sbjct: 1198 RRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMAICEACKELIWLKGLYAEL 1252
Score = 367 bits (942), Expect(3) = 0.0
Identities = 191/370 (51%), Positives = 252/370 (68%), Gaps = 7/370 (1%)
Frame = -3
Query: 3008 ISVMKKVILEGLKRKNEKDKEVEQVNAIVEDDYESADVLVVATDKC--DKQWILDSGCSF 2835
I KKV + +RKN+KD +V +A V DD +S D LVV +WILDS CSF
Sbjct: 244 IDECKKV--QAKERKNKKDGKVSVASAAVSDD-DSGDCLVVFAGCVAGHDEWILDSACSF 300
Query: 2834 HMTPNKDWFETYKRIDGGKVL-LGNNKPCSVIGIGTVRLKTHDGTERLLTEVRHIPKLKR 2658
H+ ++WF +YK + G V+ +G++ PC+++GIG+V++KT DG R L VR+IP + R
Sbjct: 301 HICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSR 360
Query: 2657 NLISLGMLDHHGYTYKGGDGVLKVFKGSMVVMKG-VRSNGLYTLQASTVIG---IAAIVT 2490
NLISL LD GY Y G DGVLKV KGS+V +KG + S LY L+ T+ G AA VT
Sbjct: 361 NLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYVLRGCTLPGSDSAAAAVT 420
Query: 2489 HAKLSKSQLWHRKLGHVSERGLQELQKQGLLYGDKVDKLEFCENCVFGKATRVKFNNSTY 2310
+ + SK+ LWH +LGH+S G+ EL K+ LL G K++FCE+C+FGK RV+FN S +
Sbjct: 421 NDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGYTSSKIKFCEHCIFGKHKRVQFNTSVH 480
Query: 2309 TTRETLSYVHFDLWGPSRHETLGGGRYFISIIDDCSQKVWVYI*KTKDEAFSKFKAWKKM 2130
TT+ TL YVH DLWGPS+ +LGG RY ++IIDD S+KVW Y K KD+ F+ FK WK M
Sbjct: 481 TTKGTLDYVHADLWGPSKKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFTAFKNWKVM 540
Query: 2129 VEVQTGKKVKKLRTDNGLEFLNMEFDELCSKEGMVRHKTVKGTPQQNGLAERMNRTLLER 1950
+E QT +KVK L TDNG EF + F++ C +EG+VRH T+ TPQQNG+AERMNRT++ R
Sbjct: 541 IERQTERKVKLLCTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNGVAERMNRTIISR 600
Query: 1949 VRCMLFSANM 1920
RCML A M
Sbjct: 601 ARCMLSHARM 610
Score = 125 bits (313), Expect(3) = 0.0
Identities = 78/207 (37%), Positives = 116/207 (56%), Gaps = 9/207 (4%)
Frame = -2
Query: 3663 KQEIEKFNGSNDFSLWKMKMLALLGNL-GLDEALQGEAKMPTTY*DEK----KKAYNTLI 3499
K ++ N FSLW++ M +L DEAL K + E+ +KA +
Sbjct: 4 KFDLPLLNYDTRFSLWQVNMRGILAQTHDYDEALDNFGKRRAEWTAEEIRKDQKALALIQ 63
Query: 3498 LSLSDKILREVTKMKTSAEVWLKLESLYMTKTLSNCLYLKAKFFTFKMPDGKDLQNHIDE 3319
L L + IL+E KTSAE+WLKLES+ M+K L++ + +K K FT KM + + HI E
Sbjct: 64 LHLHNDILQECLTEKTSAELWLKLESICMSKDLTSKMQMKMKLFTLKMKEEDSVITHIAE 123
Query: 3318 FNKLYLDLENIQVEYDDEDKALVLLHSLPKSYETFVDILKHGRETITLDDVVGALSSKE- 3142
F K+ DL +++V+YDDED L+LL SLP SY F D + R+ +TL +V AL +KE
Sbjct: 124 FKKIVADLVSMEVKYDDEDLGLLLLCSLPNSYANFRDTILLSRDELTLKEVYDALQNKEK 183
Query: 3141 ---LQRKNELKEQTGEGLVVQGRSDRR 3070
+ + + GE L V+GR++ +
Sbjct: 184 MKIMVQNDGSSSSKGEALHVRGRTENK 210
>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 601 bits (1550), Expect(3) = 0.0
Identities = 320/655 (48%), Positives = 423/655 (64%), Gaps = 11/655 (1%)
Frame = -2
Query: 1941 HAIQCQYAWGEAVNTAAYLINKCPSVAIGFKTPEEIWTGIPPSYDNLRICGCVAYAHTKE 1762
HA + W EA +TA YLIN+ PS+ + KTP E+W+G P Y L++ GC AYAH
Sbjct: 605 HARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGTPADYSQLKVFGCTAYAHVDN 664
Query: 1761 GKLEPRARKCMFVSYPEGVKGYKLWCQNKHISKCFISRDVVFK--------VDEYYLKEN 1606
GKLEPRA KC+F+ Y GVKGYKLW N K F+SR VVF + ++ E
Sbjct: 665 GKLEPRAVKCLFLGYGSGVKGYKLW--NPETGKTFMSRSVVFNESVMFTNSLPSEHVPEK 722
Query: 1605 GESSTSASSDH-DACAGIEVELADRTENQ*DYRLXXXXXXXXXXXXXXXXEALADYQLAR 1429
+H D G++VE ++ + + + + +A+
Sbjct: 723 ELQRMHMQVEHVDDYTGVQVEPVHEQDDH-NNDVADDDAHDDVQQTPPILQLEEELPIAQ 781
Query: 1428 DRTRRTRVAPTRY-GYADLISFALLTAETLEK-NELASYEEACKCKERKEWRQAMQEEMD 1255
+++RT P R +L +AL AE +E +E A+Y+EA +C + + W AM EEM
Sbjct: 782 RKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATYKEAVRCGDSENWISAMHEEMQ 841
Query: 1254 SLLKNKTWELVDKPVGQRLVSCKWIYKLKEDGSKDGKPRFKARLMARGLTQQAGIDFNEV 1075
SL KN TWE+V P ++ +SCKWI+K KE S P++KARL+ARG +Q G+D+N+V
Sbjct: 842 SLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVARGYSQIPGVDYNDV 901
Query: 1074 FSPVVKHTSIRVLLALVTQFDMELEQMDVKTTFLHGNLDEKIFMSQPKGFVKHGDAGKVC 895
FSPVVKH+SIR L++V D+ELEQ+DVKT FLHG L+E I+M QP+GF+ G VC
Sbjct: 902 FSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVC 961
Query: 894 LLKKSLYGLRQSPRQWYLKFDEVMKKNNYLRSDFDSCVYIKWIDGGVGVFLLLYVDDMLI 715
LK+SLYGL+QSPRQW +FD M +++ RS +DSCVYIK ++G ++LLLYVDDMLI
Sbjct: 962 KLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHVNGS-PIYLLLYVDDMLI 1020
Query: 714 ASTNMSEIRMLKTLLSKEFEMKDLGVAKRILGMEIKRNRNKGELFISQTSYILKLLNRFG 535
A+ + EI LK LLS EF+MKDLG AK+IL MEI R+R G LF+SQ +YI K+L RF
Sbjct: 1021 AAKSKIEITKLKKLLSSEFDMKDLGSAKKILVMEISRDRKSGLLFLSQHNYIKKVLQRFN 1080
Query: 534 MSQAKAVQTPLACHFKLSSALSPSTDDEKADMIQVPYASAIGSIMYSMVCTQPDLAYAAS 355
M AKAV TP+A HFKLS+A PSTD E M +VPY+SA+GS+MY+MVC++PDL+YA S
Sbjct: 1081 MQNAKAVSTPIAPHFKLSAAQCPSTDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMS 1140
Query: 354 VVSRFMANPGRGHWEAVKWVFRYLKGTSDYGLCYKRIS*ANEKEKLIGYVDSDYAGDLDK 175
+VSR+M+NPG+ HW V+W+FRYL+GT+ Y + + LIGYVDSDYA DLD+
Sbjct: 1141 LVSRYMSNPGKEHWRVVQWIFRYLRGTT-----YSCLKFGRTDKGLIGYVDSDYAADLDR 1195
Query: 174 RRSLTGYVFTLFGCTISWKATLQPVVXXXXXXXXXXXXXXAVKEAIWLQGLLGEL 10
RRSLTGYVFT+ C +SW+ATLQ VV A KE IWL+GL EL
Sbjct: 1196 RRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMAICEACKELIWLKGLYAEL 1250
Score = 369 bits (948), Expect(3) = 0.0
Identities = 191/370 (51%), Positives = 252/370 (68%), Gaps = 7/370 (1%)
Frame = -3
Query: 3008 ISVMKKVILEGLKRKNEKDKEVEQVNAIVEDDYESADVLVVATDKC--DKQWILDSGCSF 2835
I KKV + +RKN+KD +V +A DD +S D LVV +WILDS CSF
Sbjct: 242 IDECKKV--QAKERKNKKDGKVSVASAAASDD-DSGDCLVVFAGCVAGHDEWILDSACSF 298
Query: 2834 HMTPNKDWFETYKRIDGGKVL-LGNNKPCSVIGIGTVRLKTHDGTERLLTEVRHIPKLKR 2658
H+ ++WF +YK + G V+ +G++ PC+++GIG+V++KT DG R L VR+IP + R
Sbjct: 299 HICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSR 358
Query: 2657 NLISLGMLDHHGYTYKGGDGVLKVFKGSMVVMKG-VRSNGLYTLQASTVIG---IAAIVT 2490
NLISL LD GY Y G DGVLKV KGS+V +KG + S LY L+ T+ G AA VT
Sbjct: 359 NLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYVLRGCTLTGSDSAAAAVT 418
Query: 2489 HAKLSKSQLWHRKLGHVSERGLQELQKQGLLYGDKVDKLEFCENCVFGKATRVKFNNSTY 2310
+ + SK+ LWH +LGH+S G+ EL K+ LL G K++FCE+C+FGK RV+FN S +
Sbjct: 419 NDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFCEHCIFGKHKRVQFNTSVH 478
Query: 2309 TTRETLSYVHFDLWGPSRHETLGGGRYFISIIDDCSQKVWVYI*KTKDEAFSKFKAWKKM 2130
TT+ TL YVH DLWGPS+ +LGG RY ++IIDD S+KVW Y K KD+ F+ FK WK M
Sbjct: 479 TTKGTLDYVHADLWGPSKKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFTAFKNWKVM 538
Query: 2129 VEVQTGKKVKKLRTDNGLEFLNMEFDELCSKEGMVRHKTVKGTPQQNGLAERMNRTLLER 1950
+E QT +KVK LRTDNG EF + F++ C +EG+VRH T+ TPQQNG+AERMNRT++ R
Sbjct: 539 IERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNGVAERMNRTIISR 598
Query: 1949 VRCMLFSANM 1920
RCML A M
Sbjct: 599 ARCMLSHARM 608
Score = 127 bits (318), Expect(3) = 0.0
Identities = 79/207 (38%), Positives = 117/207 (56%), Gaps = 9/207 (4%)
Frame = -2
Query: 3663 KQEIEKFNGSNDFSLWKMKMLALLGNL-GLDEALQGEAKMPTTY*DEK----KKAYNTLI 3499
K ++ N FSLW++KM +L DEAL K + E+ +KA +
Sbjct: 2 KFDLPLLNYDTRFSLWQVKMRGILAQTHDYDEALDNFGKRRAEWTAEEIRKDQKALALIQ 61
Query: 3498 LSLSDKILREVTKMKTSAEVWLKLESLYMTKTLSNCLYLKAKFFTFKMPDGKDLQNHIDE 3319
L L + IL+E KTSAE+WLKLES+ M+K L++ + +K K FT KM + + H+ E
Sbjct: 62 LHLHNDILQECLTEKTSAELWLKLESICMSKDLTSKMQMKMKLFTLKMKEEDSVITHMAE 121
Query: 3318 FNKLYLDLENIQVEYDDEDKALVLLHSLPKSYETFVDILKHGRETITLDDVVGALSSKE- 3142
F K+ DL +++V+YDDED L+LL SLP SY F D + R+ +TL +V AL +KE
Sbjct: 122 FKKIVADLVSMEVKYDDEDLGLLLLCSLPNSYANFRDTILLSRDELTLKEVYDALQNKEK 181
Query: 3141 ---LQRKNELKEQTGEGLVVQGRSDRR 3070
+ + + GE L V+GR++ R
Sbjct: 182 MKIMVQNDGSSSSKGEALHVRGRTENR 208
>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 604 bits (1558), Expect(3) = 0.0
Identities = 321/655 (49%), Positives = 425/655 (64%), Gaps = 11/655 (1%)
Frame = -2
Query: 1941 HAIQCQYAWGEAVNTAAYLINKCPSVAIGFKTPEEIWTGIPPSYDNLRICGCVAYAHTKE 1762
HA + W EA +TA YLIN+ PS+ + KTP E+W+G+P Y L++ GC AYAH
Sbjct: 605 HARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGMPADYSQLKVFGCTAYAHVDN 664
Query: 1761 GKLEPRARKCMFVSYPEGVKGYKLWCQNKHISKCFISRDVVFK--------VDEYYLKEN 1606
GKLEPRA KC+F+ Y GVKGYKLW N K F+SR VVF + ++ E
Sbjct: 665 GKLEPRAVKCLFLGYGSGVKGYKLW--NPETGKTFMSRSVVFNESVMFTNSLPSEHVPEK 722
Query: 1605 GESSTSASSDH-DACAGIEVELADRTENQ*DYRLXXXXXXXXXXXXXXXXEALADYQLAR 1429
+H D G++VE ++ + + + + +A+
Sbjct: 723 ELQRMHMQVEHVDDDTGVQVEPVHEQDDH-NNDVADDDAHDDVQQTPPILQLEEELPIAQ 781
Query: 1428 DRTRRTRVAPTRY-GYADLISFALLTAETLEK-NELASYEEACKCKERKEWRQAMQEEMD 1255
+++RT P R +L +AL AE +E +E A+Y+EA +C + + W AM EEM
Sbjct: 782 RKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATYKEAVRCGDSENWISAMHEEMQ 841
Query: 1254 SLLKNKTWELVDKPVGQRLVSCKWIYKLKEDGSKDGKPRFKARLMARGLTQQAGIDFNEV 1075
SL KN TWE+V P ++ +SCKWI+K KE S P++KARL+ARG +Q G+D+N+V
Sbjct: 842 SLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVARGYSQIPGVDYNDV 901
Query: 1074 FSPVVKHTSIRVLLALVTQFDMELEQMDVKTTFLHGNLDEKIFMSQPKGFVKHGDAGKVC 895
FSPVVKH+SIR L++V D+ELEQ+DVKT FLHG L+E I+M QP+GF+ G VC
Sbjct: 902 FSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVC 961
Query: 894 LLKKSLYGLRQSPRQWYLKFDEVMKKNNYLRSDFDSCVYIKWIDGGVGVFLLLYVDDMLI 715
LK+SLYGL+QSPRQW +FD M +++ RS +DSCVYIK ++G ++LLLYVDDMLI
Sbjct: 962 KLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHVNGS-PIYLLLYVDDMLI 1020
Query: 714 ASTNMSEIRMLKTLLSKEFEMKDLGVAKRILGMEIKRNRNKGELFISQTSYILKLLNRFG 535
A+ + EI LK LLS EF+MKDLG AK+ILGMEI R+R G LF+SQ +YI K+L RF
Sbjct: 1021 AAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQHNYIKKVLQRFN 1080
Query: 534 MSQAKAVQTPLACHFKLSSALSPSTDDEKADMIQVPYASAIGSIMYSMVCTQPDLAYAAS 355
M AKAV TP+A HFKLS+A PS D E M +VPY+SA+GS+MY+MVC++PDL+YA S
Sbjct: 1081 MQNAKAVSTPIAPHFKLSAAQCPSIDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMS 1140
Query: 354 VVSRFMANPGRGHWEAVKWVFRYLKGTSDYGLCYKRIS*ANEKEKLIGYVDSDYAGDLDK 175
+VSR+M+NPG+ HW AV+W+FRYL+GT+ Y + + LIGYVDSDYA DLD+
Sbjct: 1141 LVSRYMSNPGKEHWRAVQWIFRYLRGTT-----YSCLKFGRTDKGLIGYVDSDYAADLDR 1195
Query: 174 RRSLTGYVFTLFGCTISWKATLQPVVXXXXXXXXXXXXXXAVKEAIWLQGLLGEL 10
RRSLTGYVFT+ C +SW+ATLQ VV A KE IWL+GL EL
Sbjct: 1196 RRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMAICEACKELIWLKGLYAEL 1250
Score = 369 bits (947), Expect(3) = 0.0
Identities = 190/370 (51%), Positives = 252/370 (68%), Gaps = 7/370 (1%)
Frame = -3
Query: 3008 ISVMKKVILEGLKRKNEKDKEVEQVNAIVEDDYESADVLVVATDKC--DKQWILDSGCSF 2835
I KKV + +RKN+KD +V +A DD +S D LVV +WILDS CSF
Sbjct: 242 IDECKKV--QAKERKNKKDGKVSVASAAASDD-DSGDCLVVFAGCVAGHDEWILDSACSF 298
Query: 2834 HMTPNKDWFETYKRIDGGKVL-LGNNKPCSVIGIGTVRLKTHDGTERLLTEVRHIPKLKR 2658
H+ ++WF +YK + G V+ +G++ PC+++GIG+V++KT DG R L VR+IP + R
Sbjct: 299 HICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSR 358
Query: 2657 NLISLGMLDHHGYTYKGGDGVLKVFKGSMVVMKG-VRSNGLYTLQASTVIG---IAAIVT 2490
NLISL LD GY Y G DGVLKV KGS+V +KG + S LY L+ T+ G AA VT
Sbjct: 359 NLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYVLRGCTLTGSDSAAAAVT 418
Query: 2489 HAKLSKSQLWHRKLGHVSERGLQELQKQGLLYGDKVDKLEFCENCVFGKATRVKFNNSTY 2310
+ + SK+ LWH +LGH+S G+ EL K+ LL G K++FCE+C+FGK RV+FN S +
Sbjct: 419 NDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFCEHCIFGKHKRVQFNTSVH 478
Query: 2309 TTRETLSYVHFDLWGPSRHETLGGGRYFISIIDDCSQKVWVYI*KTKDEAFSKFKAWKKM 2130
TT+ TL YVH DLWGPS+ +LGG RY +++IDD S+KVW Y K KD+ F+ FK WK M
Sbjct: 479 TTKGTLDYVHADLWGPSKKPSLGGARYMLTVIDDYSRKVWPYFLKHKDDTFTAFKNWKVM 538
Query: 2129 VEVQTGKKVKKLRTDNGLEFLNMEFDELCSKEGMVRHKTVKGTPQQNGLAERMNRTLLER 1950
+E QT +KVK LRTDNG EF + F++ C +EG+VRH T+ TPQQNG+AERMNRT++ R
Sbjct: 539 IERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNGVAERMNRTIISR 598
Query: 1949 VRCMLFSANM 1920
RCML A M
Sbjct: 599 ARCMLSHARM 608
Score = 120 bits (302), Expect(3) = 0.0
Identities = 78/207 (37%), Positives = 116/207 (56%), Gaps = 9/207 (4%)
Frame = -2
Query: 3663 KQEIEKFNGSNDFSLWKMKMLALLGNL-GLDEALQGEAKMPTTY*DEK----KKAYNTLI 3499
K ++ N FSL ++KM +L DEAL K + E+ +KA +
Sbjct: 2 KFDLPLLNYDTRFSLRQVKMRGILAQTHDYDEALDNFGKRRAEWTAEEIRKDQKALALIQ 61
Query: 3498 LSLSDKILREVTKMKTSAEVWLKLESLYMTKTLSNCLYLKAKFFTFKMPDGKDLQNHIDE 3319
L L + IL+E KTSAE+WLKLES+ M+K L++ + +K K FT KM + + H+ E
Sbjct: 62 LHLHNDILQECLIEKTSAELWLKLESICMSKDLTSKMQMKMKLFTLKMKEEDSVITHMAE 121
Query: 3318 FNKLYLDLENIQVEYDDEDKALVLLHSLPKSYETFVDILKHGRETITLDDVVGALSSKE- 3142
F K+ DL +++V+YDDED L+LL SLP SY F D + R+ +TL +V AL +KE
Sbjct: 122 FKKIVADLVSMEVKYDDEDLGLLLLCSLPNSYANFRDTILLSRDELTLKEVYDALQNKEK 181
Query: 3141 ---LQRKNELKEQTGEGLVVQGRSDRR 3070
+ + + GE L V+GR++ R
Sbjct: 182 MKIMVQNDGSSSSKGEALHVRGRTENR 208
>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
Length = 1208
Score = 474 bits (1220), Expect(3) = 0.0
Identities = 269/641 (41%), Positives = 359/641 (56%), Gaps = 3/641 (0%)
Frame = -2
Query: 1917 WGEAVNTAAYLINKCPSVAIGFKTPEEIWTGIPPSYDNLRICGCVAYAHTKEGKLEPRAR 1738
W EA TA +LIN+ PS A+ FKTP+E WTG Y +L++ GC AY HTK KLEPRA
Sbjct: 579 WAEAAETAVHLINRSPSSALQFKTPQEKWTGKAADYQHLKVFGCTAYVHTKTDKLEPRAV 638
Query: 1737 KCMFVSYPEGVKGYKLWCQNKHISKCFISRDVVFKVDEYYLKENGESSTSASSDHDACAG 1558
KC+F+ YP+GVKGYKLW + + KC ISRDV F E S + + D +
Sbjct: 639 KCIFLGYPKGVKGYKLWIETQGKGKCIISRDVTFN-------EQDMSKQTPAKDVEGLDQ 691
Query: 1557 IEVELADRT---ENQ*DYRLXXXXXXXXXXXXXXXXEALADYQLARDRTRRTRVAPTRYG 1387
++ E+ T E + + L Y L RDR +R P RYG
Sbjct: 692 LQFEVEHETLQPEKSKETSSKTAQEEIVHERQNEPTQGLESYNLVRDRQKRQVKPPKRYG 751
Query: 1386 YADLISFALLTAETLEKNELASYEEACKCKERKEWRQAMQEEMDSLLKNKTWELVDKPVG 1207
A++ +FAL AE + E +Y+EA E +W +A+QEEMDSL KN+TWELV KP
Sbjct: 752 QAEMTAFALSVAEEIVDMEPKTYQEAINSNEADQWVKAIQEEMDSLRKNETWELVTKPKD 811
Query: 1206 QRLVSCKWIYKLKEDGSKDGKPRFKARLMARGLTQQAGIDFNEVFSPVVKHTSIRVLLAL 1027
+++V KW++K K+ + PR+KARL+A+G +Q+ G+D+NE+FSPVVKH+SIR+LLA
Sbjct: 812 RKVVGSKWVFKRKQGTLGNEAPRYKARLVAKGFSQKEGVDYNEIFSPVVKHSSIRLLLAF 871
Query: 1026 VTQFDMELEQMDVKTTFLHGNLDEKIFMSQPKGFVKHGDAGKVCLLKKSLYGLRQSPRQW 847
V D+EL+Q+DVKT FLHG LDE I+M P + L+G Q
Sbjct: 872 VAHEDLELDQLDVKTAFLHGELDELIYMQPP----------------ERLWGRNQG---- 911
Query: 846 YLKFDEVMKKNNYLRSDFDSCVYIKWIDGGVGVFLLLYVDDMLIASTNMSEIRMLKTLLS 667
W D DML+A + +K +L
Sbjct: 912 -------------------------WSD------------DMLVACKEKRHLEQVKEMLK 934
Query: 666 KEFEMKDLGVAKRILGMEIKRNRNKGELFISQTSYILKLLNRFGMSQAKAVQTPLACHFK 487
EFEMKDLG AKRILGMEI+R+R+K L +SQ LK
Sbjct: 935 AEFEMKDLGSAKRILGMEIERDRSKRVLRLSQKFIHLK---------------------- 972
Query: 486 LSSALSPSTDDEKADMIQVPYASAIGSIMYSMVCTQPDLAYAASVVSRFMANPGRGHWEA 307
+P T +EK M ++PYAS +GS+MY+MVC++PDLAYA S++SR+M+ PG+ HW+A
Sbjct: 973 -----APETHEEKRFMERIPYASMVGSVMYTMVCSRPDLAYAVSMISRYMSCPGKPHWQA 1027
Query: 306 VKWVFRYLKGTSDYGLCYKRIS*ANEKEKLIGYVDSDYAGDLDKRRSLTGYVFTLFGCTI 127
VKW+F+YL GT GL Y S + +L G+VD+DYAG++D R+SLTGYVFT FG +
Sbjct: 1028 VKWLFQYLAGTRSLGLVYGGNS--QLETQLQGFVDADYAGNIDTRKSLTGYVFTXFGGAV 1085
Query: 126 SWKATLQPVVXXXXXXXXXXXXXXAVKEAIWLQGLLGELGV 4
SWKA LQ VV AVKEAIWL+G+ EL +
Sbjct: 1086 SWKANLQSVVALSTTEAEYMAMTEAVKEAIWLKGITEELAM 1126
Score = 379 bits (972), Expect(3) = 0.0
Identities = 183/312 (58%), Positives = 231/312 (74%)
Frame = -3
Query: 2855 LDSGCSFHMTPNKDWFETYKRIDGGKVLLGNNKPCSVIGIGTVRLKTHDGTERLLTEVRH 2676
L G F +K +T+K DGG VLLGNNK C ++G GTVR+K +DG ER+L +VR+
Sbjct: 263 LIQGALFTCVLSKLGLKTFKEADGGYVLLGNNKHCKILGTGTVRIKHYDGIERVLEDVRY 322
Query: 2675 IPKLKRNLISLGMLDHHGYTYKGGDGVLKVFKGSMVVMKGVRSNGLYTLQASTVIGIAAI 2496
IP+LKRNLISLGMLD GYT+K L+V +GS+ VMKG NGLYTL TV G +
Sbjct: 323 IPELKRNLISLGMLDKSGYTFKSEPNSLRVARGSLTVMKGTIKNGLYTLIGQTVTGKVST 382
Query: 2495 VTHAKLSKSQLWHRKLGHVSERGLQELQKQGLLYGDKVDKLEFCENCVFGKATRVKFNNS 2316
V + ++LWH++LGH+S RGLQEL+KQG+L K+ L FCE+CVFGKATRVKF +
Sbjct: 383 VLKEDVGTTKLWHQRLGHISHRGLQELEKQGVLGNYKLTDLPFCEHCVFGKATRVKFAKA 442
Query: 2315 TYTTRETLSYVHFDLWGPSRHETLGGGRYFISIIDDCSQKVWVYI*KTKDEAFSKFKAWK 2136
+ T+ L Y+H DLWGPSR ++GG RYF+++IDD S+KVW+Y K K E F KFK WK
Sbjct: 443 IHETQNQLDYIHSDLWGPSRVPSIGGARYFLTLIDDYSRKVWIYFLKNKSETFLKFKEWK 502
Query: 2135 KMVEVQTGKKVKKLRTDNGLEFLNMEFDELCSKEGMVRHKTVKGTPQQNGLAERMNRTLL 1956
+VE QT +KVKKLRTDNGLEFL+ +F+ LC KEG+ RH+TV+ TPQQNGLAERMNRT+L
Sbjct: 503 ILVETQTSRKVKKLRTDNGLEFLSNDFNSLCQKEGIARHRTVRYTPQQNGLAERMNRTIL 562
Query: 1955 ERVRCMLFSANM 1920
ERVRCML S+ +
Sbjct: 563 ERVRCMLSSSGL 574
Score = 218 bits (556), Expect(3) = 0.0
Identities = 109/236 (46%), Positives = 157/236 (66%), Gaps = 5/236 (2%)
Frame = -2
Query: 3669 TSKQEIEKFNGSNDFSLWKMKMLALLGNLGLDEALQGEAKMPTTY*DEKK-----KAYNT 3505
T+K ++EKF G NDF L ++KM ALL GL +AL GE +P+T +++K KA++
Sbjct: 3 TAKFDVEKFTGKNDFGLXRLKMRALLVQQGLQDALLGEKNLPSTMQEKQKIELLEKAHSA 62
Query: 3504 LILSLSDKILREVTKMKTSAEVWLKLESLYMTKTLSNCLYLKAKFFTFKMPDGKDLQNHI 3325
+ILSL D +LRE K K++AEVWLKLESLYMTK+L+N L+ K K +TFKM G ++ H+
Sbjct: 63 IILSLGDTVLREXAKAKSAAEVWLKLESLYMTKSLANRLHKKIKLYTFKMTPGMSIEXHL 122
Query: 3324 DEFNKLYLDLENIQVEYDDEDKALVLLHSLPKSYETFVDILKHGRETITLDDVVGALSSK 3145
D FNK+ LDLENI + DEDKA++LL SL SY D + +GR+++T D+V L ++
Sbjct: 123 DHFNKIILDLENIDITISDEDKAILLLTSLDASYTNMKDAIMYGRDSLTFDEVQSILHAR 182
Query: 3144 ELQRKNELKEQTGEGLVVQGRSDRREFXXXXXXXXXXXXXXXXXSYFCHEEGHIRR 2977
ELQ++ E KE++GEGL ++GRS++RE + CH+EGH ++
Sbjct: 183 ELQKQEESKEESGEGLNIRGRSEKREKKGKNSKSRSKSKTKKFKCFICHKEGHFKK 238
>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
Length = 1334
Score = 639 bits (1649), Expect(2) = 0.0
Identities = 336/649 (51%), Positives = 435/649 (67%), Gaps = 10/649 (1%)
Frame = -2
Query: 1917 WGEAVNTAAYLINKCPSVAIGFKTPEEIWTGIPPSYDNLRICGCVAYAHTKEGKLEPRAR 1738
W EAVNTA+YL+N+ PS AIGFKTPEE+W G P +Y NLR+ GC AY H +GKLE RA
Sbjct: 611 WAEAVNTASYLVNRSPSSAIGFKTPEELWNGKPANYQNLRVFGCPAYLHINQGKLEARAL 670
Query: 1737 KCMFVSYPEGVKGYKLWCQNKHISKCFISRDVVFKVDEYYLKENGESSTSASSDHDA--- 1567
K +FV YP+GVKGYK+WC+++ KC +SRDVVF + LKE+ E + A
Sbjct: 671 KGVFVGYPDGVKGYKIWCKDQ--GKCIVSRDVVFH-ESVLLKESAEHDAGLQDNPAANKR 727
Query: 1566 ----CAGIEVELADRTENQ*DYRLXXXXXXXXXXXXXXXXEALAD---YQLARDRTRRTR 1408
+ + VEL ++ + AD YQLARDR RR
Sbjct: 728 SGSETSKVNVELLTDKSSEKEAASDDERATAESEEHEVSELPQADLQNYQLARDRVRREV 787
Query: 1407 VAPTRYGYADLISFALLTAETLEKNELASYEEACKCKERKEWRQAMQEEMDSLLKNKTWE 1228
AP RYGYADLI++ALL A+ + E A++ EA + +W +AMQ+EM+SL +N+TW
Sbjct: 788 RAPVRYGYADLIAYALLCADEVTIEEPANFSEAMESVHCDKWLEAMQDEMESLQRNQTWT 847
Query: 1227 LVDKPVGQRLVSCKWIYKLKEDGSKDGKPRFKARLMARGLTQQAGIDFNEVFSPVVKHTS 1048
L+ P +RL++CKWI+K E P++KARL+ARG TQ+ G+DFNE+FSPVVKH+S
Sbjct: 848 LIPNPGNKRLINCKWIFKRNEGIPDVEPPKYKARLVARGFTQREGVDFNEIFSPVVKHSS 907
Query: 1047 IRVLLALVTQFDMELEQMDVKTTFLHGNLDEKIFMSQPKGFVKHGDAGKVCLLKKSLYGL 868
IR+LLA+V D+ELEQMDVKT FLHGNL+E+I M+QP+GF VCLL KSLYGL
Sbjct: 908 IRILLAMVALLDLELEQMDVKTAFLHGNLEEQILMAQPEGFECKDKEDYVCLLHKSLYGL 967
Query: 867 RQSPRQWYLKFDEVMKKNNYLRSDFDSCVYIKWIDGGVGVFLLLYVDDMLIASTNMSEIR 688
+QSPRQWY +FD+ M Y RS +DSCVY D G +LLLYVDDMLIAS SEI
Sbjct: 968 KQSPRQWYRRFDDFMVSKGYRRSRYDSCVYFGGSDQGGVAYLLLYVDDMLIASKYKSEIE 1027
Query: 687 MLKTLLSKEFEMKDLGVAKRILGMEIKRNRNKGELFISQTSYILKLLNRFGMSQAKAVQT 508
LK LL EFEMKDLG AKRILGM+I R+R+ G LF+SQ YI K+L RF M K VQT
Sbjct: 1028 RLKNLLKAEFEMKDLGNAKRILGMDIIRDRSAGTLFLSQGKYIKKVLERFEMQDCKPVQT 1087
Query: 507 PLACHFKLSSALSPSTDDEKADMIQVPYASAIGSIMYSMVCTQPDLAYAASVVSRFMANP 328
PL FKLS+A +T ++++ M + PYA A+GS+MY+MVCT+ D+AYA SVVSR+++ P
Sbjct: 1088 PLGPQFKLSAA---TTSEDESQMNEFPYAQAVGSLMYAMVCTRSDIAYAVSVVSRYLSCP 1144
Query: 327 GRGHWEAVKWVFRYLKGTSDYGLCYKRIS*ANEKEKLIGYVDSDYAGDLDKRRSLTGYVF 148
G+ HW AVKW+ RYLKG+S GL Y + ++K +++G+VDSD+AGDLD+R+S + Y+F
Sbjct: 1145 GKVHWNAVKWIMRYLKGSSTCGLLYGKTK--SDKIEVMGFVDSDFAGDLDRRKSTSRYMF 1202
Query: 147 TLFGCTISWKATLQPVVXXXXXXXXXXXXXXAVKEAIWLQGLLGELGVN 1
L C ISWK++LQ AVKEA+WL+GLL EL +N
Sbjct: 1203 VLNSCLISWKSSLQSGGALSSTEAEFIATTEAVKEAMWLRGLLNELWLN 1251
Score = 377 bits (967), Expect(2) = 0.0
Identities = 185/361 (51%), Positives = 251/361 (69%), Gaps = 5/361 (1%)
Frame = -3
Query: 2987 ILEGLKRKNEKDKEVEQVNAIVEDD----YESADVLVVATDKCDKQWILDSGCSFHMTPN 2820
I + ++K ++ +E A+ DD Y+SAD+LV + QW++DSGCSFH+ P
Sbjct: 246 IRDCFEKKKKESQEKSGDAAVASDDGSDGYQSADLLVASNSNTKGQWVIDSGCSFHLCPE 305
Query: 2819 KDWFETYKRIDGGKVLLGNNKPCSVIGIGTV-RLKTHDGTERLLTEVRHIPKLKRNLISL 2643
K F Y+ +DGG+VL+GNN C+++GI R + R L EVRH P+LKRNLISL
Sbjct: 306 KTLFYKYEAVDGGRVLMGNNNVCNIVGIWFCKRSRCLMELLRSLHEVRHAPRLKRNLISL 365
Query: 2642 GMLDHHGYTYKGGDGVLKVFKGSMVVMKGVRSNGLYTLQASTVIGIAAIVTHAKLSKSQL 2463
GMLD GY +K G L+V KG+ +VMKGV NGLY LQ S+V + ++ +++L
Sbjct: 366 GMLDSLGYFFKSRIGGLEVRKGTEIVMKGVNENGLYVLQGSSVPVQEGVSAVSEEDRTKL 425
Query: 2462 WHRKLGHVSERGLQELQKQGLLYGDKVDKLEFCENCVFGKATRVKFNNSTYTTRETLSYV 2283
WH +LGH+S +GLQEL KQGLL GD++ +LEFCENC+FGK+ R KFN + +++ L Y
Sbjct: 426 WHLRLGHMSIKGLQELSKQGLLGGDRIQQLEFCENCIFGKSHRSKFNKGEHMSKQVLDYA 485
Query: 2282 HFDLWGPSRHETLGGGRYFISIIDDCSQKVWVYI*KTKDEAFSKFKAWKKMVEVQTGKKV 2103
H D WGP++ +L GGRYF+S+IDD S+KVW+YI K KD+A KFK WK +VE Q+ K+
Sbjct: 486 HIDHWGPAQVPSLSGGRYFMSLIDDYSRKVWIYILKIKDQALEKFKVWKSLVENQSDFKL 545
Query: 2102 KKLRTDNGLEFLNMEFDELCSKEGMVRHKTVKGTPQQNGLAERMNRTLLERVRCMLFSAN 1923
K LRTDNGLEF + F+E C K G+ RHKTV+ TPQQNGLAERMNRTL+++ RCML ++
Sbjct: 546 KCLRTDNGLEFCSKVFEEYCQKHGIKRHKTVRFTPQQNGLAERMNRTLVDKTRCMLINSK 605
Query: 1922 M 1920
+
Sbjct: 606 L 606
Score = 181 bits (460), Expect = 3e-42
Identities = 100/200 (50%), Positives = 140/200 (70%), Gaps = 8/200 (4%)
Frame = -2
Query: 3663 KQEIEKFNGSNDFSLWKMKMLALLGNLGLDEALQGEAKMPTTY*--DEKKK-----AYNT 3505
+ EIEKF DFSLWK+KM ALL + GL+ AL E +T D+K++ A++T
Sbjct: 5 RHEIEKFTIGGDFSLWKLKMKALLVHQGLESALDEEDLEASTGSGIDDKRRQIQNRAHST 64
Query: 3504 LILSLSDKILREVTKMKTSAEVWLKLESLYMTKTLSNCLYLKAKFFTFKMPDGKDLQNHI 3325
LILSL D ILRE+++ KT+ +W K+E+L M K+L++ L+LK + +TF M +G +Q+HI
Sbjct: 65 LILSLGDSILREISEEKTALGIWNKVETLCMKKSLAHRLFLKKRLYTFSMREGVTIQDHI 124
Query: 3324 DEFNKLYLDLENIQ-VEYDDEDKALVLLHSLPKSYETFVDILKHGRETITLDDVVGALSS 3148
D FNK+ LDLE ++ V+ DEDKA LL SLPKSYE FVD + +GR T+TL+DV +LSS
Sbjct: 125 DTFNKIILDLEGVENVKICDEDKAFFLLSSLPKSYEGFVDTMLYGRTTLTLEDVKASLSS 184
Query: 3147 KELQRKNELKEQTGEGLVVQ 3088
KE+Q+ EL+ GEGL+ +
Sbjct: 185 KEIQKNCELETSNGEGLMAR 204
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 616 bits (1588), Expect(2) = 0.0
Identities = 325/634 (51%), Positives = 419/634 (66%), Gaps = 2/634 (0%)
Frame = -2
Query: 1917 WGEAVNTAAYLINKCPSVAIGFKTPEEIWTGIPPSYDNLRICGCVAYAHTKEGKLEPRAR 1738
W EAV+TA YLIN+ PS AI KTP E+W+G P +Y +LR+ GC AYAH GKLEPRA
Sbjct: 828 WAEAVSTACYLINRSPSYAIDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRAI 887
Query: 1737 KCMFVSYPEGVKGYKLWCQNKHISKCFISRDVVFKVDEYYLKENGESSTSASSDHDACAG 1558
KC+F+ YP GVKGYKLWC K ISR+VVF + L + ++ S A
Sbjct: 888 KCIFLGYPSGVKGYKLWCPET--KKVVISRNVVFH-ESVMLHDKPSTNVPVESQEKASVQ 944
Query: 1557 IEVELADRTENQ*DYRLXXXXXXXXXXXXXXXXEALADYQLARDRTRRTRVAPTRY-GYA 1381
+E ++ + + + +A+DR +R P RY A
Sbjct: 945 VEHLISSGHAPEKEDVAINQDEPVIEDSNSSIVQQSPKRSIAKDRPKRNIKPPQRYIEEA 1004
Query: 1380 DLISFALLTAETLEKN-ELASYEEACKCKERKEWRQAMQEEMDSLLKNKTWELVDKPVGQ 1204
+++++AL AE +E N E ++Y EA + W AM +EM+SL KN TWELV P +
Sbjct: 1005 NIVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPKEK 1064
Query: 1203 RLVSCKWIYKLKEDGSKDGKPRFKARLMARGLTQQAGIDFNEVFSPVVKHTSIRVLLALV 1024
+ + CKWI+K KE S + R+KARL+A+G +Q GIDFN+VFSPVVKH+SIR LL++V
Sbjct: 1065 KPIRCKWIFKRKEGISSSDEARYKARLIAKGYSQIPGIDFNDVFSPVVKHSSIRTLLSIV 1124
Query: 1023 TQFDMELEQMDVKTTFLHGNLDEKIFMSQPKGFVKHGDAGKVCLLKKSLYGLRQSPRQWY 844
D ELEQMDVKT FLHG L+E I+M QPKGFV G VC LKKSLYGL+QSPRQWY
Sbjct: 1125 AMHDYELEQMDVKTAFLHGELEEDIYMEQPKGFVVPGKENLVCRLKKSLYGLKQSPRQWY 1184
Query: 843 LKFDEVMKKNNYLRSDFDSCVYIKWIDGGVGVFLLLYVDDMLIASTNMSEIRMLKTLLSK 664
+FD M + RS++DSCVY+K +DG ++LLLYVDDMLIA+ + SEI LK LS
Sbjct: 1185 KRFDSFMLSQKFRRSNYDSCVYLKVVDGS-AIYLLLYVDDMLIAAKDKSEIAKLKAQLSS 1243
Query: 663 EFEMKDLGVAKRILGMEIKRNRNKGELFISQTSYILKLLNRFGMSQAKAVQTPLACHFKL 484
EFEMKDLG AK+ILGMEI R R+ +L++SQ YI K+L RF M AK V TPLA HF+L
Sbjct: 1244 EFEMKDLGAAKKILGMEITRKRHSFKLYLSQKGYIEKVLRRFNMHDAKPVSTPLAAHFRL 1303
Query: 483 SSALSPSTDDEKADMIQVPYASAIGSIMYSMVCTQPDLAYAASVVSRFMANPGRGHWEAV 304
SS L P +D + M +VPY+SA+GS+MY+MVC++PDL++A SVVSR+MANPG+ HW+AV
Sbjct: 1304 SSDLCPQSDYDIEYMSRVPYSSAVGSLMYAMVCSRPDLSHALSVVSRYMANPGKEHWKAV 1363
Query: 303 KWVFRYLKGTSDYGLCYKRIS*ANEKEKLIGYVDSDYAGDLDKRRSLTGYVFTLFGCTIS 124
+W+FRYL+GTS L + R ++ L+GYVDSD+AGDLD+ RSL GYVFT+ GC +S
Sbjct: 1364 QWIFRYLRGTSSACLQFGR-----SRDGLVGYVDSDFAGDLDRGRSLAGYVFTIGGCAVS 1418
Query: 123 WKATLQPVVXXXXXXXXXXXXXXAVKEAIWLQGL 22
WKA+LQ V A KEAIWL+GL
Sbjct: 1419 WKASLQATVALSTTEAEYMAISEACKEAIWLRGL 1452
Score = 374 bits (959), Expect(2) = 0.0
Identities = 188/350 (53%), Positives = 244/350 (69%), Gaps = 6/350 (1%)
Frame = -3
Query: 2951 KEVEQVNAIVEDDYESADVLVVATD--KCDKQWILDSGCSFHMTPNKDWFETYKRIDGGK 2778
KE E A+V D+ A++LV + QWIL++ C +HM PN+DWF TY+ + G
Sbjct: 475 KEEEGKAAVVTDEKSDAELLVAYAGCAQTSDQWILNTACIYHMCPNRDWFATYEAVQVGT 534
Query: 2777 VLLGNNKPCSVIGIGTVRLKTHDGTERLLTEVRHIPKLKRNLISLGMLDHHGYTYKGGDG 2598
VL+G++ PC V GIGTV++K DG R L++VRHIP LKR+LISL LD GY Y GGDG
Sbjct: 535 VLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDG 594
Query: 2597 VLKVFKGSMVVMKG-VRSNGLYTLQASTVIGIAAIVTHAKLSKSQ---LWHRKLGHVSER 2430
+LKV KGS+VVMK ++S LY L+ +T++G A V+ + LS S LWH +LGH++E
Sbjct: 595 ILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDS-LSNSDATNLWHMRLGHMTEI 653
Query: 2429 GLQELQKQGLLYGDKVDKLEFCENCVFGKATRVKFNNSTYTTRETLSYVHFDLWGPSRHE 2250
GL EL K+GLL G + KL+FCE+C+FGK RVKFN ST+TT L YVH DLWGP+R
Sbjct: 654 GLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKT 713
Query: 2249 TLGGGRYFISIIDDCSQKVWVYI*KTKDEAFSKFKAWKKMVEVQTGKKVKKLRTDNGLEF 2070
+ GG RY ++I+DD S+KVW Y K K +AF FK WK MVE QT +KVK LRTDNG+EF
Sbjct: 714 SFGGTRYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEF 773
Query: 2069 LNMEFDELCSKEGMVRHKTVKGTPQQNGLAERMNRTLLERVRCMLFSANM 1920
+ F C EG+VRH TV TPQQNG+AERMNRT++ + RC+L +A +
Sbjct: 774 CSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCLLSNAGL 823
Score = 137 bits (346), Expect = 4e-29
Identities = 80/193 (41%), Positives = 118/193 (61%), Gaps = 7/193 (3%)
Frame = -2
Query: 3627 FSLWKMKMLALLGNLGLDEALQGEAKMPTTY*-DEKK---KAYNTLILSLSDKILREVTK 3460
FSLW++KM A+L LD+AL G K + DEKK KA + + L LS+ IL+EV K
Sbjct: 224 FSLWQVKMRAVLAQQDLDDALSGFDKRTHDWSNDEKKRDRKAMSYIHLHLSNNILQEVLK 283
Query: 3459 MKTSAEVWLKLESLYMTKTLSNCLYLKAKFFTFKMPDGKDLQNHIDEFNKLYLDLENIQV 3280
+ +A +WLKLE + MTK L++ ++LK F K+ D + +H+ F ++ DLE+++V
Sbjct: 284 EEIAAGLWLKLEQICMTKDLTSKMHLKQTLFLHKLQDDGSVMDHLSAFKEIIADLESMEV 343
Query: 3279 EYDDEDKALVLLHSLPKSYETFVDILKHGRETITLDDVVGALSSKELQRK---NELKEQT 3109
+YD+ED L+LL SLP SY F D + + R+T+TL +V AL KE +K +E
Sbjct: 344 KYDEEDLGLILLCSLPSSYANFRDTILYSRDTLTLKEVYDALHVKEKMKKMVPSEGSNSQ 403
Query: 3108 GEGLVVQGRSDRR 3070
EGL+V GR +
Sbjct: 404 AEGLIVWGRQQEK 416
>emb|CAA31653.1| polyprotein [Arabidopsis thaliana]
Length = 1291
Score = 582 bits (1499), Expect(3) = 0.0
Identities = 307/656 (46%), Positives = 418/656 (63%), Gaps = 18/656 (2%)
Frame = -2
Query: 1917 WGEAVNTAAYLINKCPSVAIGFKTPEEIWTGIPPSYDNLRICGCVAYAHTKEGKLEPRAR 1738
W EA TAAYLIN+ P+ AI PEE+W P Y +LR G +AY H +GKL+PRA
Sbjct: 636 WAEAAATAAYLINRSPASAIDHNVPEELWLNKKPGYKHLRRFGSIAYVHIDQGKLKPRAL 695
Query: 1737 KCMFVSYPEGVKGYKLWCQNKHISKCFISRDVVFKVDEYYL----KENGESSTSASSDHD 1570
K +F+ YP G KGYK+W +H KC ISR+V+F + Y KE S + + H
Sbjct: 696 KGIFIGYPAGTKGYKIWLLEEH--KCVISRNVLFHEESVYKDTMKKERVVESEAEPASHS 753
Query: 1569 ACAGIEV------------ELADRTENQ*DYRLXXXXXXXXXXXXXXXXEALADYQLARD 1426
I+V +++D E+ +LA+YQLARD
Sbjct: 754 KSTLIKVKTPGNLNSGEVIQVSDEEESDESVEEEQEPETQVELPETQTTSSLANYQLARD 813
Query: 1425 RTRRTRVAPTRYGYADLISFALLTAETLEKNELASYEEACKCKERKEWRQAMQEEMDSLL 1246
R RR P R+ ++FAL+T ETL E SY+EA KE K+W+ A EEMDSL+
Sbjct: 814 RERRQIHPPARFTEESGVAFALVTVETLSMEEPQSYQEATSDKEWKKWKLATHEEMDSLI 873
Query: 1245 KNKTWELVDKPVGQRLVSCKWIYKLKEDGSKDGKP-RFKARLMARGLTQQAGIDFNEVFS 1069
KN TW LVDKP ++++ C+W++KLK GS +P R+KA+L+A+G T + G+D+ E+F+
Sbjct: 874 KNGTWVLVDKPQNRKIIGCRWLFKLKS-GSPGVEPVRYKAQLVAKGYTHREGVDYQEIFA 932
Query: 1068 PVVKHTSIRVLLALVTQFDMELEQMDVKTTFLHGNLDEKIFMSQPKGFVKHGDAGKVCLL 889
VVKHTSIR+L+++V D+ELEQMDVKT FLHG L+E+++M QP+G + KVCLL
Sbjct: 933 LVVKHTSIRILMSVVVDQDLELEQMDVKTAFLHGELEEELYMEQPEGCISEDGENKVCLL 992
Query: 888 KKSLYGLRQSPRQWYLKFDEVMKKNNYLRSDFDSCVYIKWIDGGVGVFLLLYVDDMLIAS 709
KKSLYGL+QSPRQW +F+ M N++RS+ D+CVY+K + ++LLLYVDDMLIA
Sbjct: 993 KKSLYGLKQSPRQWNKRFNRFMIDQNFIRSEHDACVYVKQVSEQEHLYLLLYVDDMLIAG 1052
Query: 708 TNMSEIRMLKTLLSKEFEMKDLGVAKRILGMEIKRNRNKGELFISQTSYILKLLNRFGMS 529
+ SEI +K LS EFEMKD+G A RILG++I R+ G L +SQ SYI ++ RF M+
Sbjct: 1053 KSKSEINKVKEQLSMEFEMKDMGPASRILGIDIIRDMKNGVLRMSQASYIHNVVQRFNMA 1112
Query: 528 QAKAVQTPLACHFKLSSALSPSTDDEKADMIQVPYASAIGSIMYSMVCTQPDLAYAASVV 349
+AK ++P+ HFKL++ DDE D VPYASA+GSIMY+M+ +PDLAY +V
Sbjct: 1113 EAKVTRSPIGAHFKLAAV---RDDDECIDNNAVPYASAVGSIMYAMIGIRPDLAYVICLV 1169
Query: 348 SRFMANPGRGHWEAVKWVFRYLKGTSDYGLCYKRIS*ANEKE-KLIGYVDSDYAGDLDKR 172
SR+MA PG HWEAVKW+ RY++G+ D L + + EKE ++ GY DSDYA DLD+R
Sbjct: 1170 SRYMARPGSIHWEAVKWILRYMRGSQDLNLVFTK-----EKEFRVTGYCDSDYAADLDRR 1224
Query: 171 RSLTGYVFTLFGCTISWKATLQPVVXXXXXXXXXXXXXXAVKEAIWLQGLLGELGV 4
RS++GYVFT+ G T+SWKA LQ V A KEA+W++GL+ +LG+
Sbjct: 1225 RSVSGYVFTVGGNTVSWKANLQSVTALSTTEAEFMALTEAAKEALWIKGLMKDLGL 1280
Score = 311 bits (797), Expect(3) = 0.0
Identities = 150/346 (43%), Positives = 223/346 (64%), Gaps = 1/346 (0%)
Frame = -3
Query: 2969 RKNEKDKEVEQVNAIVEDDYESADVLVVATDKCDKQWILDSGCSFHMTPNKDWFETYKRI 2790
RK + + E ++ + ++ L V W+LDSGC+ HM+ +DWF +++
Sbjct: 282 RKRKLESENPGEAGVITEKLVFSEALSVNDLAVRDIWVLDSGCTSHMSARRDWFCSFRED 341
Query: 2789 DGGKVLLGNNKPCSVIGIGTVRLKTHDGTERLLTEVRHIPKLKRNLISLGMLDHHGYTYK 2610
G +LLG++ G G+++++TH GT L V+++P+L+RNLIS G LD GY ++
Sbjct: 342 GGPTILLGDDHSVKSQGQGSIKIETHGGTIIGLENVKYVPELRRNLISTGTLDKRGYKHE 401
Query: 2609 GGDGVLKVFKGSMVVMKGVRSNGLYTLQASTVIGIAAIVTHAKLSKSQLWHRKLGHVSER 2430
GGDG ++ FK ++G NGLY L +TV+ + +K K++LWH +LGH+
Sbjct: 402 GGDGKVRYFKNQKTALRGELVNGLYILDGNTVLSETCVAEGSK-GKTELWHSRLGHIGLN 460
Query: 2429 GLQELQKQGLLYGDKVDKLEFCENCVFGKATRVKFNNSTYTTRETLSYVHFDLWGPSR-H 2253
++ L +GL+ +++ L+FCENCV GKA +V FN + + + L YVH DLWG +
Sbjct: 461 NMKVLAGKGLVSKEEIRVLDFCENCVMGKAKKVSFNVGKHNSEDVLRYVHADLWGSTNVT 520
Query: 2252 ETLGGGRYFISIIDDCSQKVWVYI*KTKDEAFSKFKAWKKMVEVQTGKKVKKLRTDNGLE 2073
+L G +YF+SIIDD ++KVW+Y ++KDE F +F WK++VE Q KKVK LRTDNGLE
Sbjct: 521 PSLSGNKYFLSIIDDKTRKVWLYFLRSKDETFDRFCEWKELVENQQNKKVKCLRTDNGLE 580
Query: 2072 FLNMEFDELCSKEGMVRHKTVKGTPQQNGLAERMNRTLLERVRCML 1935
F N++FD C + G+ RHKT TPQQNG+AERMNRT++E+VRCML
Sbjct: 581 FCNLKFDAYCKEHGIERHKTCTYTPQQNGVAERMNRTIMEKVRCML 626
Score = 107 bits (266), Expect(3) = 0.0
Identities = 71/269 (26%), Positives = 122/269 (45%), Gaps = 37/269 (13%)
Frame = -2
Query: 3672 TTSKQEIEKFNGSNDFSLWKMKMLALLGNLGL------------------------DEAL 3565
T K + FN ++DFSLWK M A LG GL D
Sbjct: 9 TILKTSFQVFNENSDFSLWKTCMKAHLGLAGLKGIIDDFDLTMTVPIPKSEGKKIEDGDE 68
Query: 3564 QGEAKMPTTY*D-----EKKKAYNTLILSLSDKILREVTKMKTSAEVWLKLESLYMTKTL 3400
QG++ D + + A N +I + D +LR++ K++AE+W L YM +L
Sbjct: 69 QGDSSQTKIVPDLVKIEKSENAMNIIIAHVGDAVLRKIDHCKSAAEMWETLNKQYMETSL 128
Query: 3399 SNCLYLKAKFFTFKMPDGKDLQNHIDEFNKLYLDLENIQVEYDDEDKALVLLHSLPKSYE 3220
N +Y++ KF++FKM D K + +++EF K+ +L ++++ +E +A++ L+ L Y
Sbjct: 129 PNRIYVQLKFYSFKMNDTKSINENVNEFLKIVAELSSLEINVVEEVRAILFLNRLSSRYS 188
Query: 3219 TFVDILKHGRETITLDDVVGALSS--KELQRKNELKEQTGEGLVV------QGRSDRREF 3064
LK+G + ++L DV+ A S +EL + E + T L Q R+
Sbjct: 189 QLKHTLKYGNKALSLKDVISAARSLERELNEQKETDKNTSTVLYTNERSRPQTRNQNHNK 248
Query: 3063 XXXXXXXXXXXXXXXXXSYFCHEEGHIRR 2977
++C +EGH+++
Sbjct: 249 GGQGRGRSKSNSNAKLTCWYCKKEGHVKK 277
>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
gi|53370655|gb|AAU89150.1| integrase core domain
containing protein [Oryza sativa Japonica Group]
gi|108710286|gb|ABF98081.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1322
Score = 625 bits (1612), Expect(2) = 0.0
Identities = 328/641 (51%), Positives = 428/641 (66%), Gaps = 5/641 (0%)
Frame = -2
Query: 1917 WGEAVNTAAYLINKCPSVAIGFKTPEEIWTGIPPSYDNLRICGCVAYAHTKEGKLEPRAR 1738
W EA NTA YLIN+ PS+ + KTP EIW+G+P Y LR+ GC AYAH GKLEPRA
Sbjct: 614 WAEAANTACYLINRSPSIPLNKKTPIEIWSGMPADYSQLRVFGCTAYAHVDNGKLEPRAI 673
Query: 1737 KCMFVSYPEGVKGYKLWCQNKHISKCFISRDVVFKVDEYYLKENG---ESSTSASSDHDA 1567
KC+F+ Y GVKGYKLW N +K F+SR+V+F +E+ + + + S +
Sbjct: 674 KCLFLGYGSGVKGYKLW--NPETNKTFMSRNVIF--NEFVMFNDSLPTDVIPGGSDEEQQ 729
Query: 1566 CAGIEVELADRTENQ*DYRLXXXXXXXXXXXXXXXXEALADYQLARDRTRRTRVAPTRY- 1390
++VE D E + D +A RT+R+ AP R
Sbjct: 730 YVSVQVEHVDDQETE-----IVGNDVNDTVQHSPSVLQPQDEPIAHRRTKRSCGAPVRLI 784
Query: 1389 GYADLISFALLTAETLEKN-ELASYEEACKCKERKEWRQAMQEEMDSLLKNKTWELVDKP 1213
D++ +A AE +E E A+Y EA +R++W A+QEEM SL KN TWELV P
Sbjct: 785 EECDMVYYAFSYAEQVENTLEPATYTEAVVSGDREKWISAIQEEMQSLEKNGTWELVHLP 844
Query: 1212 VGQRLVSCKWIYKLKEDGSKDGKPRFKARLMARGLTQQAGIDFNEVFSPVVKHTSIRVLL 1033
++ V CKWI+K KE S PRFK RL+A+G +Q AG+D+N+VFSPVVKH+SIR
Sbjct: 845 KQKKPVRCKWIFKRKEGLSPSEPPRFKVRLVAKGFSQIAGVDYNDVFSPVVKHSSIRTFF 904
Query: 1032 ALVTQFDMELEQMDVKTTFLHGNLDEKIFMSQPKGFVKHGDAGKVCLLKKSLYGLRQSPR 853
++VT D+ELEQ+DVKTTFLHG L+E+I+M QP+GF+ G VC LK+SLYGL+QSPR
Sbjct: 905 SIVTMHDLELEQLDVKTTFLHGELEEEIYMDQPEGFIVPGKEDYVCKLKRSLYGLKQSPR 964
Query: 852 QWYLKFDEVMKKNNYLRSDFDSCVYIKWIDGGVGVFLLLYVDDMLIASTNMSEIRMLKTL 673
QWY +FD M + + RS+FDSCVYIK+++G ++LLLYVDDMLIA+ + +I LK
Sbjct: 965 QWYKRFDSFMLSHGFKRSEFDSCVYIKFVNGS-PIYLLLYVDDMLIAAKSKEQITTLKKQ 1023
Query: 672 LSKEFEMKDLGVAKRILGMEIKRNRNKGELFISQTSYILKLLNRFGMSQAKAVQTPLACH 493
LS EF+MKDLG AK+ILGMEI R+RN G LF+SQ SYI K+L RF M AK V TP+A H
Sbjct: 1024 LSSEFDMKDLGAAKKILGMEITRDRNSGLLFLSQQSYIKKVLQRFNMHDAKPVSTPIAPH 1083
Query: 492 FKLSSALSPSTDDEKADMIQVPYASAIGSIMYSMVCTQPDLAYAASVVSRFMANPGRGHW 313
FKLS+ STD++ M +VPY+SA+GS+MY+MVC+ PDL++A S+VSR+MANPG+ HW
Sbjct: 1084 FKLSALQCASTDEDVEYMSRVPYSSAVGSLMYAMVCSWPDLSHAMSLVSRYMANPGKEHW 1143
Query: 312 EAVKWVFRYLKGTSDYGLCYKRIS*ANEKEKLIGYVDSDYAGDLDKRRSLTGYVFTLFGC 133
+AV+W+FRYL+GT+D L + RI + L+GYVDSD+A DLDKRRSLTGYVFT+ C
Sbjct: 1144 KAVQWIFRYLRGTADACLKFGRID-----KGLVGYVDSDFAADLDKRRSLTGYVFTIGSC 1198
Query: 132 TISWKATLQPVVXXXXXXXXXXXXXXAVKEAIWLQGLLGEL 10
+SWKATLQPVV A KE++WL+GL EL
Sbjct: 1199 AVSWKATLQPVVAQSTTEAEYMAIAEACKESVWLKGLFAEL 1239
Score = 345 bits (886), Expect(2) = 0.0
Identities = 182/357 (50%), Positives = 235/357 (65%), Gaps = 6/357 (1%)
Frame = -3
Query: 2972 KRKNEKDKEVEQVNAIVEDDYESADVLVVATD--KCDKQWILDSGCSFHMTPNKDWFETY 2799
K K + D + V + D S D LVV +WILD+ CSFH+ N+DWF +Y
Sbjct: 255 KEKRKSDGKASVVTSAENSD--SGDCLVVFAGYVASHDEWILDTACSFHICINRDWFSSY 312
Query: 2798 KRIDGGKVL-LGNNKPCSVIGIGTVRLKTHDGTERLLTEVRHIPKLKRNLISLGMLDHHG 2622
K + V+ +G++ P ++GIG+V++KTHDG R L +VRHIP + RNLISL LD G
Sbjct: 313 KSVQNEDVVRMGDDNPREIVGIGSVQIKTHDGMTRTLKDVRHIPGMARNLISLSTLDAEG 372
Query: 2621 YTYKGGDGVLKVFKGSMVVMKG-VRSNGLYTLQASTVIG--IAAIVTHAKLSKSQLWHRK 2451
Y Y G GV+KV KGS+V M G + S LY L+ ST+ G AA VT + SK+ LWH +
Sbjct: 373 YKYSGSGGVVKVSKGSLVYMIGDMNSANLYVLRGSTLHGSVTAAAVTKDEPSKTNLWHMR 432
Query: 2450 LGHVSERGLQELQKQGLLYGDKVDKLEFCENCVFGKATRVKFNNSTYTTRETLSYVHFDL 2271
LGH+SE G+ EL K+ LL G ++FCE+CVFGK RVKFN S + T+ L YVH DL
Sbjct: 433 LGHMSELGMAELMKRNLLDGCTQGNMKFCEHCVFGKHKRVKFNTSVHRTKGILDYVHADL 492
Query: 2270 WGPSRHETLGGGRYFISIIDDCSQKVWVYI*KTKDEAFSKFKAWKKMVEVQTGKKVKKLR 2091
WGPSR +LGG RY ++IIDD S+K W Y K KD+ F+ FK K M+E QT K+VK L
Sbjct: 493 WGPSRKPSLGGARYMLTIIDDYSRKEWPYFLKHKDDTFAAFKERKVMIERQTEKEVKVLC 552
Query: 2090 TDNGLEFLNMEFDELCSKEGMVRHKTVKGTPQQNGLAERMNRTLLERVRCMLFSANM 1920
TDNG EF + FD+ C KEG+VRH T+ TPQQNG+AERMNRT++ + RCML +A M
Sbjct: 553 TDNGGEFCSDAFDDYCRKEGIVRHHTIPYTPQQNGVAERMNRTIISKARCMLSNARM 609
Score = 133 bits (334), Expect = 1e-27
Identities = 80/209 (38%), Positives = 128/209 (61%), Gaps = 9/209 (4%)
Frame = -2
Query: 3663 KQEIEKFNGSNDFSLWKMKMLALLGNLG-LDEALQGEAKMPTTY*--DEKKK---AYNTL 3502
K ++ + FSLW++KM A+L LDEAL+ K TT +EK+K A + +
Sbjct: 5 KYDLPLLDYKTRFSLWQVKMRAVLAQTSDLDEALESFGKKKTTEWTAEEKRKDRKALSLI 64
Query: 3501 ILSLSDKILREVTKMKTSAEVWLKLESLYMTKTLSNCLYLKAKFFTFKMPDGKDLQNHID 3322
L LS+ IL+EV + KT+AE+WLKLES+ M+K L++ +++K K F+ K+ + + NHI
Sbjct: 65 QLHLSNDILQEVLQKKTAAELWLKLESICMSKDLTSKMHIKMKLFSHKLHESGSVLNHIS 124
Query: 3321 EFNKLYLDLENIQVEYDDEDKALVLLHSLPKSYETFVDILKHGRETITLDDVVGALSSKE 3142
F ++ DL +++V++DDED L+LL SLP SY F + R+ +TL +V AL ++E
Sbjct: 125 VFKEIVADLVSMEVQFDDEDLGLLLLCSLPSSYANFRHTILLSRDELTLAEVYEALQNRE 184
Query: 3141 LQR---KNELKEQTGEGLVVQGRSDRREF 3064
+ ++ GE L V+GRS++R +
Sbjct: 185 KMKGMVQSYASSSKGEALQVRGRSEQRTY 213
>emb|CAA20201.1| putative transposable element [Arabidopsis thaliana]
gi|7268932|emb|CAB79135.1| putative transposable element
[Arabidopsis thaliana]
Length = 1308
Score = 533 bits (1374), Expect(3) = 0.0
Identities = 294/656 (44%), Positives = 402/656 (61%), Gaps = 18/656 (2%)
Frame = -2
Query: 1917 WGEAVNTAAYLINKCPSVAIGFKTPEEIWTGIPPSYDNLRICGCVAYAHTKEGKLEPRAR 1738
W EA TAAYL+N+ P+ A+ PEE+W P Y +LR GC+AY H +GKL+PRA
Sbjct: 617 WAEAAATAAYLVNRSPASAVDHNVPEELWLDKKPGYKHLRRFGCIAYVHLDQGKLKPRAL 676
Query: 1737 KCMFVSYPEGVKGYKLWCQNKHISKCFISRDVVFKVDEYY--LKENGESSTSASSD---- 1576
K +F+ YP+G KGYK+W ++ KC ISR++VF ++ Y ++E+ E S SD
Sbjct: 677 KGVFLGYPQGTKGYKVWLLDEE--KCVISRNIVFNENQVYKDIRESSEQSVKDISDLEGY 734
Query: 1575 ---------HDACA---GIEVELADRTENQ*DYRLXXXXXXXXXXXXXXXXEALADYQLA 1432
H C+ G+ +E D+ + L++YQ A
Sbjct: 735 NEFQVSVKEHGECSKTGGVTIEEIDQESDS---------ENSVTQEPLIASIDLSNYQSA 785
Query: 1431 RDRTRRTRVAPTRYGYADLISFALLTAETLEKNELASYEEACKCKERKEWRQAMQEEMDS 1252
RDR RR P + + AL+ AE +E E Y +A K K +W M+EE+DS
Sbjct: 786 RDRERRAPNPPQKLADYTHFALALVMAEEIESEEPQCYHDAKKDKHWIKWNGGMKEEIDS 845
Query: 1251 LLKNKTWELVDKPVGQRLVSCKWIYKLKEDGSKDGKPRFKARLMARGLTQQAGIDFNEVF 1072
LLKN TW++V+ P Q+++SC+W++KLK R+KARL+ARG TQQ GID+ EVF
Sbjct: 846 LLKNGTWDIVEWPKEQKVISCRWLFKLKPGIPGVEAQRYKARLVARGFTQQKGIDYEEVF 905
Query: 1071 SPVVKHTSIRVLLALVTQFDMELEQMDVKTTFLHGNLDEKIFMSQPKGFVKHGDAGKVCL 892
+PVVKH SIR+L++ V + DMELEQMDVKTTFLHG LD+ ++M QP+GF + + +VCL
Sbjct: 906 APVVKHISIRILMSAVVKDDMELEQMDVKTTFLHGELDQVLYMEQPEGFEVNPEKDQVCL 965
Query: 891 LKKSLYGLRQSPRQWYLKFDEVMKKNNYLRSDFDSCVYIKWIDGGVGVFLLLYVDDMLIA 712
LKKSLYGL+Q+PRQW KF M + RS+ DSCVY+K ++ G V+LLLYVDDML+A
Sbjct: 966 LKKSLYGLKQAPRQWNKKFHAFMLSLQFARSEHDSCVYVKEVNPGEFVYLLLYVDDMLLA 1025
Query: 711 STNMSEIRMLKTLLSKEFEMKDLGVAKRILGMEIKRNRNKGELFISQTSYILKLLNRFGM 532
+ + SEI LK LS +FEMKD+G A RILG++I RNR +G L +SQT Y+ K++ RF M
Sbjct: 1026 AKSKSEISKLKEALSLKFEMKDMGAASRILGIDIIRNRKEGTLRLSQTRYVDKVIQRFRM 1085
Query: 531 SQAKAVQTPLACHFKLSSALSPSTDDEKADMIQVPYASAIGSIMYSMVCTQPDLAYAASV 352
+ AK V TP+ HFKL+S + + D VPY+SA+GS+MY+M+ T PD+AYA +
Sbjct: 1086 ADAKVVSTPMGAHFKLTSLID---EIGSVDPEVVPYSSAVGSVMYAMIGTIPDVAYAMGL 1142
Query: 351 VSRFMANPGRGHWEAVKWVFRYLKGTSDYGLCYKRIS*ANEKEKLIGYVDSDYAGDLDKR 172
VSRFM+ PG AN + + GY DSD+A DLDKR
Sbjct: 1143 VSRFMSRPG-----------------------------ANLEVQ--GYCDSDHAADLDKR 1171
Query: 171 RSLTGYVFTLFGCTISWKATLQPVVXXXXXXXXXXXXXXAVKEAIWLQGLLGELGV 4
RS++GYVFT+ G T+SWK++LQ VV AVKEAIW++GLL ++G+
Sbjct: 1172 RSISGYVFTVGGNTVSWKSSLQHVVALSSTQAEFIALTEAVKEAIWIRGLLEDMGL 1227
Score = 303 bits (777), Expect(3) = 0.0
Identities = 149/344 (43%), Positives = 216/344 (62%)
Frame = -3
Query: 2966 KNEKDKEVEQVNAIVEDDYESADVLVVATDKCDKQWILDSGCSFHMTPNKDWFETYKRID 2787
K + + E + ++ + ++ L + + +W++DSGC++HMT DWF + +
Sbjct: 274 KRKLENEGQGKAGVITEKLVYSEALSMYDQEAKDKWVIDSGCTYHMTSRMDWFSEFNENE 333
Query: 2786 GGKVLLGNNKPCSVIGIGTVRLKTHDGTERLLTEVRHIPKLKRNLISLGMLDHHGYTYKG 2607
+LLG++ G GTV++ TH G+ R+L VR +P L+RNLIS G LD GY ++G
Sbjct: 334 TTMILLGDDHTVESKGSGTVKVNTHGGSIRVLKNVRFVPNLRRNLISTGTLDKLGYKHEG 393
Query: 2606 GDGVLKVFKGSMVVMKGVRSNGLYTLQASTVIGIAAIVTHAKLSKSQLWHRKLGHVSERG 2427
GDG ++ +K + + G NGLY L TV+ V + K++LWH +LGH+S
Sbjct: 394 GDGKVRFYKENKTALCGNLVNGLYVLDGHTVVNENCNVEGSN-EKTELWHCRLGHMSLNN 452
Query: 2426 LQELQKQGLLYGDKVDKLEFCENCVFGKATRVKFNNSTYTTRETLSYVHFDLWGPSRHET 2247
++ L ++GLL + +L FCENCV GK+ ++ FN + T E L Y+H DLWG
Sbjct: 453 MKILAEKGLLEKKDIKELSFCENCVMGKSKKLSFNVGKHITDEVLGYIHADLWGK----- 507
Query: 2246 LGGGRYFISIIDDCSQKVWVYI*KTKDEAFSKFKAWKKMVEVQTGKKVKKLRTDNGLEFL 2067
+YF+SIIDD S+KVW+ KTKDE F +F WK++VE Q KKVK LRTDNGLEF
Sbjct: 508 ----QYFLSIIDDKSRKVWLMFLKTKDETFERFCEWKELVENQVNKKVKILRTDNGLEFC 563
Query: 2066 NMEFDELCSKEGMVRHKTVKGTPQQNGLAERMNRTLLERVRCML 1935
N++FDE C + G+ RH+T TPQQNG+A+RMNRTL+E+VRC+L
Sbjct: 564 NLKFDEFCKQNGIERHRTCTYTPQQNGVAKRMNRTLMEKVRCLL 607
Score = 119 bits (297), Expect(3) = 0.0
Identities = 80/269 (29%), Positives = 134/269 (49%), Gaps = 36/269 (13%)
Frame = -2
Query: 3675 ATTSKQEIEKFNGSNDFSLWKMKMLALLGNLGLDEALQG---------------EAKMPT 3541
A ++K EI+ FNG DFSLWK+++ A LG LGL AL E++
Sbjct: 2 AMSTKVEIKTFNGDRDFSLWKIRIEAQLGVLGLKPALSDFTLTKTILVVKSEKKESESED 61
Query: 3540 TY*DEKK--------------KAYNTLILSLSDKILREVTKMKTSAEVWLKLESLYMTKT 3403
D KK +A N +I ++D +L +V T+AE+W L L+M +
Sbjct: 62 DETDSKKTEEVPDPIKFEQSDQAKNFIINHITDTVLLKVQHCVTAAELWATLNKLFMETS 121
Query: 3402 LSNCLYLKAKFFTFKMPDGKDLQNHIDEFNKLYLDLENIQVEYDDEDKALVLLHSLPKSY 3223
L N +Y + + ++FKM D + + DEF ++ +L ++Q++ +E +A+++L+SLP SY
Sbjct: 122 LPNRIYTQLRLYSFKMVDNLSIDQNTDEFLRIVAELGSLQIQVGEEVQAILILNSLPPSY 181
Query: 3222 ETFVDILKHGRETITLDDVVGALSSKELQRK-NELKE------QTGEGLVVQGRSDRREF 3064
LK+G +T+++ DVV S+K L+R+ +E KE T +GR +
Sbjct: 182 IQLKHTLKYGNKTLSVQDVVS--SAKSLERELSEQKETIRAPASTALYTAERGRPQTKNT 239
Query: 3063 XXXXXXXXXXXXXXXXXSYFCHEEGHIRR 2977
+FC +EGH+++
Sbjct: 240 QGQGKGRGRSNSKSRLTCWFCKKEGHVKK 268
>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1243
Score = 612 bits (1579), Expect(2) = 0.0
Identities = 323/638 (50%), Positives = 419/638 (65%), Gaps = 2/638 (0%)
Frame = -2
Query: 1917 WGEAVNTAAYLINKCPSVAIGFKTPEEIWTGIPPSYDNLRICGCVAYAHTKEGKLEPRAR 1738
W EAV+TA YLIN+ P AI KTP E+W+G P +Y +LR+ GC AYAH GKLEPRA
Sbjct: 593 WAEAVSTACYLINRSPGYAIDKKTPIEVWSGSPTNYSDLRVFGCTAYAHVDNGKLEPRAI 652
Query: 1737 KCMFVSYPEGVKGYKLWCQNKHISKCFISRDVVFKVDEYYLKENGESSTSASSDHDACAG 1558
KC+F+ Y GVKGYKLWC K ISR+VVF + L + ++ S A
Sbjct: 653 KCIFLGYASGVKGYKLWCPET--KKVVISRNVVFH-ESVILHDKPSTNVPVESQEKASVQ 709
Query: 1557 IEVELADRTENQ*DYRLXXXXXXXXXXXXXXXXEALADYQLARDRTRRTRVAPTRY-GYA 1381
+E ++ + + +A+D+ +R P RY A
Sbjct: 710 VEHLISSGHAPEKEDVAINQDAPVIEDSDSSIVHQSPKRSIAKDKPKRNIKPPRRYIEEA 769
Query: 1380 DLISFALLTAETLEKN-ELASYEEACKCKERKEWRQAMQEEMDSLLKNKTWELVDKPVGQ 1204
++++AL AE +E N E ++Y EA + W AM +EM+SL KN TWELV P +
Sbjct: 770 KIVAYALSVAEKIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPKEK 829
Query: 1203 RLVSCKWIYKLKEDGSKDGKPRFKARLMARGLTQQAGIDFNEVFSPVVKHTSIRVLLALV 1024
+ + CKWI+K KE S + R+KARL+A+G +Q GIDFN+VFSPVVKH+SIR LL +V
Sbjct: 830 KPIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQIPGIDFNDVFSPVVKHSSIRTLLGIV 889
Query: 1023 TQFDMELEQMDVKTTFLHGNLDEKIFMSQPKGFVKHGDAGKVCLLKKSLYGLRQSPRQWY 844
D ELEQM+VKT FLHG L+E I+M QP+GFV G VC LKKSLYGL+QSPRQWY
Sbjct: 890 AMHDYELEQMNVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQWY 949
Query: 843 LKFDEVMKKNNYLRSDFDSCVYIKWIDGGVGVFLLLYVDDMLIASTNMSEIRMLKTLLSK 664
+FD M + S++DSCVY+K +DG V ++LLLYVDDMLIA+ + SEI LK LS
Sbjct: 950 KRFDSFMLSQKFRISNYDSCVYLKVVDGSV-IYLLLYVDDMLIAAKDKSEIEKLKAQLSS 1008
Query: 663 EFEMKDLGVAKRILGMEIKRNRNKGELFISQTSYILKLLNRFGMSQAKAVQTPLACHFKL 484
EFEMKDLG AK+ILGMEI R R+ G+L++SQ YI K+L RF M AK V TPLA HF+L
Sbjct: 1009 EFEMKDLGAAKKILGMEITRERHSGKLYLSQKGYIEKVLRRFNMHDAKPVSTPLAAHFRL 1068
Query: 483 SSALSPSTDDEKADMIQVPYASAIGSIMYSMVCTQPDLAYAASVVSRFMANPGRGHWEAV 304
SS L P +D + M +VPY+SA+GS+MY+MVC +PDL++A SVV+R+MANPG+ HW+AV
Sbjct: 1069 SSDLCPLSDYDIEYMSRVPYSSAVGSLMYAMVCCRPDLSHALSVVNRYMANPGKEHWKAV 1128
Query: 303 KWVFRYLKGTSDYGLCYKRIS*ANEKEKLIGYVDSDYAGDLDKRRSLTGYVFTLFGCTIS 124
+W+FRYL+GTS L ++R ++ L+GYVDSD+AGDLD+RRS+TGYVFT+ GC +S
Sbjct: 1129 QWIFRYLRGTSSACLQFER-----SRDGLVGYVDSDFAGDLDRRRSITGYVFTIGGCAVS 1183
Query: 123 WKATLQPVVXXXXXXXXXXXXXXAVKEAIWLQGLLGEL 10
WKA+LQ V A KEAIWL+GL EL
Sbjct: 1184 WKASLQATVALSTTEAEYMAIFEACKEAIWLRGLYTEL 1221
Score = 317 bits (813), Expect(2) = 0.0
Identities = 172/348 (49%), Positives = 225/348 (64%), Gaps = 4/348 (1%)
Frame = -3
Query: 2951 KEVEQVNAIVEDDYESADVLVVATDKCDKQWILDSGCSFHMTPNKDWFETYKRIDGGKVL 2772
KE E A+V D+ A++LV +GC+ T ++DWF TY+ + GG VL
Sbjct: 268 KEEEGKAAVVTDEKSDAELLVAY-----------AGCA--QTSDQDWFATYEALQGGTVL 314
Query: 2771 LGNNKPCSVIGIGTVRLKTHDGTERLLTEVRHIPKLKRNLISLGMLDHHGYTYKGGDGVL 2592
+G++ PC V GIGTV++K DG R L++V+HIP LKR+LISL G+L
Sbjct: 315 MGDDTPCEVAGIGTVQIKMFDGCIRTLSDVQHIPNLKRSLISLY-------------GIL 361
Query: 2591 KVFKGSMVVMK-GVRSNGLYTLQASTVIGIAAIVTHAKLSKSQ---LWHRKLGHVSERGL 2424
KV KGS+VVMK ++S LY L+ +T++G A V + LS S LWH +LGH+SE GL
Sbjct: 362 KVTKGSLVVMKVDIKSANLYHLRGTTILGNVAAVFDS-LSNSDATNLWHMRLGHMSEIGL 420
Query: 2423 QELQKQGLLYGDKVDKLEFCENCVFGKATRVKFNNSTYTTRETLSYVHFDLWGPSRHETL 2244
EL K+GLL G + KL+FCE+C+FGK RVKFN ST+TT L YVH DLWGP+ +
Sbjct: 421 AELSKRGLLDGQSIRKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPAHKTSF 480
Query: 2243 GGGRYFISIIDDCSQKVWVYI*KTKDEAFSKFKAWKKMVEVQTGKKVKKLRTDNGLEFLN 2064
GG RY ++I+DD S+KVW Y K K +AF FK WK MVE QT +KVK LRTDNG+EF +
Sbjct: 481 GGARYMMTIVDDYSRKVWPYFLKHKYQAFDGFKEWKTMVERQTERKVKILRTDNGMEFCS 540
Query: 2063 MEFDELCSKEGMVRHKTVKGTPQQNGLAERMNRTLLERVRCMLFSANM 1920
F C EG+V H T TPQQN +AERMNRT++ + RCML +A +
Sbjct: 541 KIFKSYCKSEGIVCHYTAPHTPQQNDVAERMNRTIISKARCMLSNAGL 588
Score = 142 bits (359), Expect = 1e-30
Identities = 81/205 (39%), Positives = 126/205 (61%), Gaps = 7/205 (3%)
Frame = -2
Query: 3663 KQEIEKFNGSNDFSLWKMKMLALLGNLGLDEALQGEAKMPTTY*-DEKK---KAYNTLIL 3496
K ++ + FSLW++KM A+L LD+AL G K + DEKK KA + + L
Sbjct: 5 KYDLPLLDRDTRFSLWQVKMRAVLAQQDLDDALSGFDKRTQDWSNDEKKRDRKAISYIHL 64
Query: 3495 SLSDKILREVTKMKTSAEVWLKLESLYMTKTLSNCLYLKAKFFTFKMPDGKDLQNHIDEF 3316
LS+ IL+EV K +T+A +WLKLE + MTK L++ ++LK K F K+ D + + +H+ F
Sbjct: 65 HLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDESVMDHLSAF 124
Query: 3315 NKLYLDLENIQVEYDDEDKALVLLHSLPKSYETFVDILKHGRETITLDDVVGALSSKELQ 3136
++ DLE+++V+YD++D L+LL SLP SY F + + R+T+TL +V A +KE
Sbjct: 125 KEIVADLESMEVKYDEDDLGLILLCSLPSSYANFRGTILYSRDTLTLKEVYDAFHAKEKM 184
Query: 3135 RK---NELKEQTGEGLVVQGRSDRR 3070
+K +E EGLVV+GR ++
Sbjct: 185 KKMVTSEGSNSQAEGLVVRGRQQKK 209
>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1278
Score = 568 bits (1464), Expect(2) = 0.0
Identities = 307/639 (48%), Positives = 402/639 (62%), Gaps = 3/639 (0%)
Frame = -2
Query: 1917 WGEAVNTAAYLINKCPSVAIGFKTPEEIWTGIPPSYDNLRICGCVAYAHTKEGKLEPRAR 1738
W EA NTA YLIN+ PS+ + KTP EIW+G+P Y LR+ GC AYAH KLEPRA
Sbjct: 614 WAEAANTACYLINRSPSIPLNKKTPIEIWSGMPADYSQLRVFGCTAYAHVDNEKLEPRAI 673
Query: 1737 KCMFVSYPEGVKGYKLWCQNKHISKCFISRDVVFKVDEYYLKENGESSTSASSDHDA-CA 1561
KC+F+ Y GVKGYKLW N +K F+SR VVF + SD +
Sbjct: 674 KCLFLGYGLGVKGYKLW--NPETNKTFMSRSVVFNESVMFNDSLPTDVIPGGSDEEQQYV 731
Query: 1560 GIEVELADRTENQ*DYRLXXXXXXXXXXXXXXXXEALADYQLARDRTRRTRVAPTRY-GY 1384
++VE D E + D +A RT+R+ AP R
Sbjct: 732 SVQVEHVDDQETE-----IVGNDVNDTVQHSPPVLQPQDEPIAHRRTKRSCGAPVRLIEE 786
Query: 1383 ADLISFALLTAETLEKN-ELASYEEACKCKERKEWRQAMQEEMDSLLKNKTWELVDKPVG 1207
D++ +A AE +E E A+Y EA +R++W AMQEEM SL KN TWELV P
Sbjct: 787 CDMVYYAFSCAEQVENTLEPATYTEAVVSGDREKWISAMQEEMQSLEKNGTWELVHLPKQ 846
Query: 1206 QRLVSCKWIYKLKEDGSKDGKPRFKARLMARGLTQQAGIDFNEVFSPVVKHTSIRVLLAL 1027
++ V CKWI+K KE S PRFKARL+A+G +Q G+D+N+VFSPVVKH+SIR ++
Sbjct: 847 KKPVRCKWIFKRKEGLSPSEPPRFKARLVAKGFSQIVGVDYNDVFSPVVKHSSIRTFFSI 906
Query: 1026 VTQFDMELEQMDVKTTFLHGNLDEKIFMSQPKGFVKHGDAGKVCLLKKSLYGLRQSPRQW 847
V D+ELEQ+DVKT FLHG L+E+I+M QP+GF+ G VC LK+SLYGL+QSPRQW
Sbjct: 907 VAMHDLELEQLDVKTAFLHGELEEEIYMDQPEGFIVPGKEDYVCKLKRSLYGLKQSPRQW 966
Query: 846 YLKFDEVMKKNNYLRSDFDSCVYIKWIDGGVGVFLLLYVDDMLIASTNMSEIRMLKTLLS 667
Y +FD M + + RS+FDSCVYIK+++G ++LLLYVDD+LIA+ + +I LK LS
Sbjct: 967 YKRFDSFMLSHGFKRSEFDSCVYIKFVNGS-PIYLLLYVDDILIAAKSKEQITTLKKQLS 1025
Query: 666 KEFEMKDLGVAKRILGMEIKRNRNKGELFISQTSYILKLLNRFGMSQAKAVQTPLACHFK 487
EF+MKDLG AK+ILGMEI R++N G LF+SQ SYI K+L F M AK V TP+A HFK
Sbjct: 1026 SEFDMKDLGAAKKILGMEITRDKNSGLLFLSQQSYIKKVLQCFNMHDAKPVSTPIAPHFK 1085
Query: 486 LSSALSPSTDDEKADMIQVPYASAIGSIMYSMVCTQPDLAYAASVVSRFMANPGRGHWEA 307
LS+ +TD++ M +VPY+SA+GS+MY+MVC++PDL++A S+VSR+M NPG+ HW+A
Sbjct: 1086 LSALQCANTDEDVEYMSRVPYSSAVGSLMYAMVCSRPDLSHAMSLVSRYMTNPGKEHWKA 1145
Query: 306 VKWVFRYLKGTSDYGLCYKRIS*ANEKEKLIGYVDSDYAGDLDKRRSLTGYVFTLFGCTI 127
V+W+FRYL+GT+D L + R + LIGYVDSD+A DLDKRRSLT Y+ C
Sbjct: 1146 VQWIFRYLRGTADACLKFGRTD-----KGLIGYVDSDFAADLDKRRSLTEYMAIAETC-- 1198
Query: 126 SWKATLQPVVXXXXXXXXXXXXXXAVKEAIWLQGLLGEL 10
KE++WL+GL EL
Sbjct: 1199 --------------------------KESVWLKGLFAEL 1211
Score = 357 bits (916), Expect(2) = 0.0
Identities = 181/355 (50%), Positives = 234/355 (65%), Gaps = 4/355 (1%)
Frame = -3
Query: 2972 KRKNEKDKEVEQVNAIVEDDYESADVLVVATDKCDKQWILDSGCSFHMTPNKDWFETYKR 2793
K K + D + V + D V+ +WILD+ CSFH+ N+DWF +YK
Sbjct: 255 KEKRKSDGKASVVTSAKNSDSGDCLVVFAGCVASHDEWILDTACSFHIYINRDWFSSYKS 314
Query: 2792 IDGGKVL-LGNNKPCSVIGIGTVRLKTHDGTERLLTEVRHIPKLKRNLISLGMLDHHGYT 2616
+ G V+ +GN+ P ++GIG+V++KTHDG R L +VRHIP + RNLISL LD GY
Sbjct: 315 VQNGDVVRMGNDNPREIVGIGSVQIKTHDGITRTLKDVRHIPGMARNLISLSTLDAEGYK 374
Query: 2615 YKGGDGVLKVFKGSMVVMKG-VRSNGLYTLQASTVIG--IAAIVTHAKLSKSQLWHRKLG 2445
Y G GV+KV KGS+V M G + S LY L+ ST+ G AA VT + +K+ LWH +LG
Sbjct: 375 YSGSGGVVKVSKGSLVYMIGDMNSANLYVLRGSTLHGSVTAAAVTKDEPNKTNLWHMRLG 434
Query: 2444 HVSERGLQELQKQGLLYGDKVDKLEFCENCVFGKATRVKFNNSTYTTRETLSYVHFDLWG 2265
H+SE G+ EL K+ LL G ++FCE CVFGK RVKFN S + T+ L YVH DLWG
Sbjct: 435 HMSELGMAELMKRNLLDGCTQGNMKFCERCVFGKHKRVKFNTSVHRTKGILDYVHADLWG 494
Query: 2264 PSRHETLGGGRYFISIIDDCSQKVWVYI*KTKDEAFSKFKAWKKMVEVQTGKKVKKLRTD 2085
PSR +LGG RY ++IIDD S+KVW Y K KD+ F+ FK WK M+E QT K+VK LRTD
Sbjct: 495 PSRKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFAAFKEWKVMIERQTEKEVKVLRTD 554
Query: 2084 NGLEFLNMEFDELCSKEGMVRHKTVKGTPQQNGLAERMNRTLLERVRCMLFSANM 1920
N EF + FD+ C KEG+VRH T+ TPQQNG+AERMNRT++ + RCML +A M
Sbjct: 555 NAGEFCSDAFDDYCRKEGIVRHHTIPYTPQQNGVAERMNRTIISKARCMLSNARM 609
Score = 139 bits (349), Expect = 2e-29
Identities = 80/209 (38%), Positives = 129/209 (61%), Gaps = 9/209 (4%)
Frame = -2
Query: 3663 KQEIEKFNGSNDFSLWKMKMLALLGNLG-LDEALQGEAKMPTTY*D-----EKKKAYNTL 3502
K ++ + FSLW++KM A+L LDEAL+ K TT + +KA + +
Sbjct: 5 KYDLPLLDYKTRFSLWQVKMRAVLAQTSDLDEALESFGKKKTTEWTTGEKRKDRKALSLI 64
Query: 3501 ILSLSDKILREVTKMKTSAEVWLKLESLYMTKTLSNCLYLKAKFFTFKMPDGKDLQNHID 3322
L LS+ IL+EV + KT+AE+WLKLES+ M+K L++ +++K K F+ K+ + + NHI
Sbjct: 65 QLHLSNDILQEVLQEKTAAELWLKLESICMSKDLTSKMHIKMKLFSHKLQESGSVLNHIS 124
Query: 3321 EFNKLYLDLENIQVEYDDEDKALVLLHSLPKSYETFVDILKHGRETITLDDVVGALSSKE 3142
F ++ DL +++V++DDED L+LL SLP SYE F D + R+ +TL +V AL ++E
Sbjct: 125 VFKEIVADLVSMEVQFDDEDLGLLLLCSLPSSYENFRDTILLSRDELTLAEVYEALQNRE 184
Query: 3141 LQR---KNELKEQTGEGLVVQGRSDRREF 3064
+ +++ GE L V+GRS++R +
Sbjct: 185 KMKGMVQSDASSSKGEALQVKGRSEQRTY 213
>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1312
Score = 499 bits (1285), Expect(2) = 0.0
Identities = 280/638 (43%), Positives = 367/638 (57%), Gaps = 2/638 (0%)
Frame = -2
Query: 1917 WGEAVNTAAYLINKCPSVAIGFKTPEEIWTGIPPSYDNLRICGCVAYAHTKEGKLEPRAR 1738
W EAV+T YLIN+ PS A KTP E+W+G P +Y +LR+ GC AYAH GKLEPRA
Sbjct: 656 WAEAVSTTCYLINRSPSYATDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRAI 715
Query: 1737 KCMFVSYPEGVKGYKLWCQNKHISKCFISRDVVFKVDEYYLKENGESSTSASSDHDACAG 1558
KC+F+ YP GVKGYKLWC K ISR+VVF + L + ++ S A
Sbjct: 716 KCIFLGYPSGVKGYKLWCPET--KKVVISRNVVFH-ESVILHDKPSTNVPVESQEKASVQ 772
Query: 1557 IEVELADRTENQ*DYRLXXXXXXXXXXXXXXXXEALADYQLARDRTRRTRVAPTRY-GYA 1381
+E ++ + + + + +A+D+ +R P RY A
Sbjct: 773 VEHLISSGHAPEKENVAINQDAPVIEDSDSSIVQQSSKRSIAKDKPKRNIKPPRRYIEEA 832
Query: 1380 DLISFALLTAETLEKN-ELASYEEACKCKERKEWRQAMQEEMDSLLKNKTWELVDKPVGQ 1204
+++++AL AE +E N E ++Y EA + W AM +EM+SL KN TWE V P +
Sbjct: 833 NIVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLKKNHTWEFVKLPKEK 892
Query: 1203 RLVSCKWIYKLKEDGSKDGKPRFKARLMARGLTQQAGIDFNEVFSPVVKHTSIRVLLALV 1024
+ + CKWI+K KE S + R+KARL+A+G +Q GIDFN+VFSP++KH+SIR LL +V
Sbjct: 893 KPIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQIPGIDFNDVFSPIMKHSSIRTLLGIV 952
Query: 1023 TQFDMELEQMDVKTTFLHGNLDEKIFMSQPKGFVKHGDAGKVCLLKKSLYGLRQSPRQWY 844
D ELEQMDVKT FLHG L+E I+M QP+GFV G VC LKKSLYGL+QSPRQWY
Sbjct: 953 AMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVLGKENLVCRLKKSLYGLKQSPRQWY 1012
Query: 843 LKFDEVMKKNNYLRSDFDSCVYIKWIDGGVGVFLLLYVDDMLIASTNMSEIRMLKTLLSK 664
+FD M + RS++DSCVY+K +DG ++LLLYVDDMLIA+ + SEI LK LS
Sbjct: 1013 KRFDSFMLSQKFRRSNYDSCVYLKVVDGS-AIYLLLYVDDMLIAAKDKSEIAKLKAQLSS 1071
Query: 663 EFEMKDLGVAKRILGMEIKRNRNKGELFISQTSYILKLLNRFGMSQAKAVQTPLACHFKL 484
EF MKDLG AK+ILGMEI R R+ G+L++SQ YI K+L RF M K +
Sbjct: 1072 EFGMKDLGAAKKILGMEITRERHSGKLYLSQKGYIKKVLRRFNMHDVKPI---------- 1121
Query: 483 SSALSPSTDDEKADMIQVPYASAIGSIMYSMVCTQPDLAYAASVVSRFMANPGRGHWEAV 304
L P +D + M +VPY+SA+GS+MY+M
Sbjct: 1122 IFRLCPQSDYDIEYMSRVPYSSAVGSLMYAMF---------------------------- 1153
Query: 303 KWVFRYLKGTSDYGLCYKRIS*ANEKEKLIGYVDSDYAGDLDKRRSLTGYVFTLFGCTIS 124
++ +GYVDSD+AGDLD+RRSLTGYVFT+ GC +S
Sbjct: 1154 ----------------------GRSRDGFVGYVDSDFAGDLDRRRSLTGYVFTIGGCDVS 1191
Query: 123 WKATLQPVVXXXXXXXXXXXXXXAVKEAIWLQGLLGEL 10
WKA+LQ V A KEAIWL+GL EL
Sbjct: 1192 WKASLQATVALSTTEAEYMAISEACKEAIWLRGLYTEL 1229
Score = 367 bits (943), Expect(2) = 0.0
Identities = 189/353 (53%), Positives = 243/353 (68%), Gaps = 7/353 (1%)
Frame = -3
Query: 2957 KDKEVEQVNAIVEDDYESADVLVVATDKCDK---QWILDSGCSFHMTPNKDWFETYKRID 2787
K K+ E+ A V D +S L+VA C + QWILD+ ++HM PN+DWF TY+ +
Sbjct: 300 KGKKEEEGKAAVVTDEKSDTELLVAYAGCAQTSDQWILDTAWTYHMCPNRDWFATYEALQ 359
Query: 2786 GGKVLLGNNKPCSVIGIGTVRLKTHDGTERLLTEVRHIPKLKRNLISLGMLDHHGYTYKG 2607
GG VL+G++ PC V GIGTV++K DG R L++VRHIP LKR+LISL LD GY Y G
Sbjct: 360 GGTVLMGDDTPCEVAGIGTVQIKMFDGYIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSG 419
Query: 2606 GDGVLKVFKGSMVVMKG-VRSNGLYTLQASTVIGIAAIVTHAKLSKSQ---LWHRKLGHV 2439
GDG+LKV KGS+VVMK ++S LY L+ +T++G A V+ + LS S LWH +LGH+
Sbjct: 420 GDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDS-LSNSDATNLWHMRLGHM 478
Query: 2438 SERGLQELQKQGLLYGDKVDKLEFCENCVFGKATRVKFNNSTYTTRETLSYVHFDLWGPS 2259
SE GL EL K+ LL G + KL+FCE+C+FGK RVKFN ST+TT L YVH DLWGP+
Sbjct: 479 SEIGLAELSKRELLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPA 538
Query: 2258 RHETLGGGRYFISIIDDCSQKVWVYI*KTKDEAFSKFKAWKKMVEVQTGKKVKKLRTDNG 2079
+ GG RY ++I+DD S+KVW Y K K +AF FK WK MVE QT KKVK LRTDNG
Sbjct: 539 CKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTEKKVKILRTDNG 598
Query: 2078 LEFLNMEFDELCSKEGMVRHKTVKGTPQQNGLAERMNRTLLERVRCMLFSANM 1920
+EF + F C EG+V H TV TPQQNG+AERMN ++ + RCML +A++
Sbjct: 599 MEFCSKIFKSYCKSEGIVHHYTVPHTPQQNGVAERMNMAIISKARCMLSNADL 651
Score = 144 bits (364), Expect = 4e-31
Identities = 87/217 (40%), Positives = 130/217 (59%), Gaps = 7/217 (3%)
Frame = -2
Query: 3699 ARGKVCMAATTSKQEIEKFNGSNDFSLWKMKMLALLGNLGLDEALQGEAKMPTTY*-DEK 3523
A G + MA+ K ++ + FSLW++KM A+L LD+AL G K + DEK
Sbjct: 30 AEGLIPMASL--KYDLPLLDRDTRFSLWQVKMRAVLAQQDLDDALSGFDKRTQDWSNDEK 87
Query: 3522 KK---AYNTLILSLSDKILREVTKMKTSAEVWLKLESLYMTKTLSNCLYLKAKFFTFKMP 3352
KK A + + L LS+ IL+EV K +T+A +WLKLE + MTK L++ ++LK K F K+
Sbjct: 88 KKDRKAMSYIHLHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQ 147
Query: 3351 DGKDLQNHIDEFNKLYLDLENIQVEYDDEDKALVLLHSLPKSYETFVDILKHGRETITLD 3172
D + +H+ F ++ DLE+I+V+YD+ED L+LL SLP SY F D + + +T+ L
Sbjct: 148 DDGSVMDHLSTFKEIVADLESIEVKYDEEDLGLILLCSLPSSYANFRDTILYSHDTLILK 207
Query: 3171 DVVGALSSKELQRK---NELKEQTGEGLVVQGRSDRR 3070
+V AL +KE +K +E EGLVV+GR +
Sbjct: 208 EVYDALHAKEKMKKMVPSEGSNSQAEGLVVRGRQQEK 244
>pir||S23319 hypothetical protein 2 - Arabidopsis thaliana retrotransposon Ta1-2
(strain Landsberg) (fragment) gi|16384|emb|CAA37924.1|
unnamed protein product [Arabidopsis thaliana]
Length = 1084
Score = 486 bits (1250), Expect(3) = 0.0
Identities = 256/555 (46%), Positives = 348/555 (62%), Gaps = 16/555 (2%)
Frame = -2
Query: 1917 WGEAVNTAAYLINKCPSVAIGFKTPEEIWTGIPPSYDNLRICGCVAYAHTKEGKLEPRAR 1738
W EA TAAYLI++ P+ AI PEE+W P Y +LR G +AY H +GKL+PRA
Sbjct: 536 WAEAAATAAYLISRSPASAIDHNVPEELWLNKKPGYKHLRRFGSIAYVHIDQGKLKPRAL 595
Query: 1737 KCMFVSYPEGVKGYKLWCQNKHISKCFISRDVVFKVDEYYL----KENGESSTSASSDHD 1570
K +F+ YP G KGYK+W + KC ISR+V+F + Y KE S + + H
Sbjct: 596 KGIFIGYPSGTKGYKIWLLEEQ--KCVISRNVLFHEELVYKDTIEKERVVESEAEPASHS 653
Query: 1569 ACAGIE------------VELADRTENQ*DYRLXXXXXXXXXXXXXXXXEALADYQLARD 1426
I+ ++++D E+ +LA+YQL RD
Sbjct: 654 KSTLIKMKTPGNLNSGGVIQVSDEEESDESVDEEQEPEPQVELPETQTTSSLANYQLVRD 713
Query: 1425 RTRRTRVAPTRYGYADLISFALLTAETLEKNELASYEEACKCKERKEWRQAMQEEMDSLL 1246
R RR P R+ ++FAL+T ETL E SY+EA KE K+W+ A EE +SL+
Sbjct: 714 RERRQIHPPARFTEESGVAFALVTVETLSMEEPQSYQEATSDKEWKKWKLATHEEKNSLI 773
Query: 1245 KNKTWELVDKPVGQRLVSCKWIYKLKEDGSKDGKPRFKARLMARGLTQQAGIDFNEVFSP 1066
KN TW LVDKP ++++ C+W++K+K R+KARL+A+G TQ+ G+D+ E+F+P
Sbjct: 774 KNGTWVLVDKPKDRKIIGCRWLFKMKSGIPGVEPVRYKARLVAKGYTQREGVDYQEIFAP 833
Query: 1065 VVKHTSIRVLLALVTQFDMELEQMDVKTTFLHGNLDEKIFMSQPKGFVKHGDAGKVCLLK 886
V KHTSIR+L+++V D+ELEQMDVKTTFLHG L+E+++M QP GF+ KVCLLK
Sbjct: 834 VAKHTSIRILMSVVVDQDLELEQMDVKTTFLHGELEEELYMEQPDGFISEDGENKVCLLK 893
Query: 885 KSLYGLRQSPRQWYLKFDEVMKKNNYLRSDFDSCVYIKWIDGGVGVFLLLYVDDMLIAST 706
KSLYGL+QSPRQW +F M N++RS+ D+CVY+K ++LLLYVDDMLIA
Sbjct: 894 KSLYGLKQSPRQWNKRFSRFMIDQNFIRSEHDACVYVKQAGEQDHLYLLLYVDDMLIAGK 953
Query: 705 NMSEIRMLKTLLSKEFEMKDLGVAKRILGMEIKRNRNKGELFISQTSYILKLLNRFGMSQ 526
+ SEI ++ LS EFEMKD+G A RILG++I R+R G L +SQ YI ++ RF M++
Sbjct: 954 SKSEINKVEQ-LSMEFEMKDMGPASRILGIDIIRDRKNGVLRMSQARYIHNVVQRFNMAE 1012
Query: 525 AKAVQTPLACHFKLSSALSPSTDDEKADMIQVPYASAIGSIMYSMVCTQPDLAYAASVVS 346
AK ++P+ HFKL++ DDE D VPYASA+GSIMY+M+ T+PDLAY +VS
Sbjct: 1013 AKVTRSPIGAHFKLAAV---RDDDECIDNNDVPYASAVGSIMYAMIGTRPDLAYVICLVS 1069
Query: 345 RFMANPGRGHWEAVK 301
R+MA PG HWEAVK
Sbjct: 1070 RYMARPGNIHWEAVK 1084
Score = 305 bits (782), Expect(3) = 0.0
Identities = 148/346 (42%), Positives = 221/346 (63%), Gaps = 1/346 (0%)
Frame = -3
Query: 2969 RKNEKDKEVEQVNAIVEDDYESADVLVVATDKCDKQWILDSGCSFHMTPNKDWFETYKRI 2790
RK + + E ++ + ++ L V W+LDSGC+ HM+ KDWF +++
Sbjct: 182 RKRKLESENPGEAGVITEKLVFSEALSVNDLAVRDIWVLDSGCTSHMSARKDWFCNFRKD 241
Query: 2789 DGGKVLLGNNKPCSVIGIGTVRLKTHDGTERLLTEVRHIPKLKRNLISLGMLDHHGYTYK 2610
G +LLG++ G G++++ TH GT +L V+++P+L+RNLIS G LD GY ++
Sbjct: 242 GGTTILLGDDHSVKSQGQGSIKIDTHGGTITVLENVKYVPELRRNLISTGTLDKRGYKHE 301
Query: 2609 GGDGVLKVFKGSMVVMKGVRSNGLYTLQASTVIGIAAIVTHAKLSKSQLWHRKLGHVSER 2430
GGDG ++ FK ++G NGLY L +T++ + +K K++LWH +LGH+
Sbjct: 302 GGDGKVRYFKNQKTALRGEIVNGLYILDGNTILSETCVAEGSK-GKTELWHSRLGHMGLN 360
Query: 2429 GLQELQKQGLLYGDKVDKLEFCENCVFGKATRVKFNNSTYTTRETLSYVHFDLWGPSR-H 2253
++ L +GL+ +++ +L+FCENCV GKA +V FN + + LSYVH DLWG +
Sbjct: 361 NMKVLAGKGLVSKEEIRELDFCENCVMGKAKKVSFNMGKHNSEYVLSYVHADLWGSTNVT 420
Query: 2252 ETLGGGRYFISIIDDCSQKVWVYI*KTKDEAFSKFKAWKKMVEVQTGKKVKKLRTDNGLE 2073
+L G +YF+SIIDD ++KVW+Y ++KDE F +F K++VE Q KKVK LRTDNGLE
Sbjct: 421 PSLSGNKYFLSIIDDKTRKVWLYFLRSKDETFDRFCERKELVENQQNKKVKCLRTDNGLE 480
Query: 2072 FLNMEFDELCSKEGMVRHKTVKGTPQQNGLAERMNRTLLERVRCML 1935
F N++FD C G+ RH T TPQQNG+A+RMNRT++E+VRCML
Sbjct: 481 FCNLKFDAYCKDHGIERHMTCTYTPQQNGVADRMNRTIMEKVRCML 526
Score = 83.6 bits (205), Expect(3) = 0.0
Identities = 44/168 (26%), Positives = 85/168 (50%), Gaps = 8/168 (4%)
Frame = -2
Query: 3456 KTSAEVWLKLESLYMTKTLSNCLYLKAKFFTFKMPDGKDLQNHIDEFNKLYLDLENIQVE 3277
K++AE+W L YM +L N +Y++ KF++FKM D K + +++EF K+ +L ++++
Sbjct: 10 KSAAEMWETLNKQYMETSLPNRIYVQLKFYSFKMNDSKSINENVNEFLKIVAELSSLEIN 69
Query: 3276 YDDEDKALVLLHSLPKSYETFVDILKHGRETITLDDVVGALSS--KELQRKNELKEQTGE 3103
+E +A++ L+ L Y LK+G + ++L DV+ + S +EL + E + T
Sbjct: 70 VVEEVRAILFLNGLSSRYSQLKHTLKYGNKALSLQDVISSARSLERELDEQKETDKNTST 129
Query: 3102 GLVV------QGRSDRREFXXXXXXXXXXXXXXXXXSYFCHEEGHIRR 2977
L Q R+ + ++C +EGH+++
Sbjct: 130 VLYTNERGRPQTRNQNQNKEGQGRGISKSNSNAKLTCWYCKKEGHVKK 177
>dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]
Length = 1298
Score = 530 bits (1364), Expect(2) = 0.0
Identities = 286/640 (44%), Positives = 393/640 (61%), Gaps = 3/640 (0%)
Frame = -2
Query: 1917 WGEAVNTAAYLINKCPSVAIGFKTPEEIWTGIPPSYDNLRICGCVAYA--HTKE-GKLEP 1747
W EAVNTA YL+N+ PS AI KTP E+WTG P Y NL I G + YA + +E KL+P
Sbjct: 600 WAEAVNTACYLVNRAPSTAIELKTPMEMWTGKPVDYSNLHIFGSIVYAMYNAQEITKLDP 659
Query: 1746 RARKCMFVSYPEGVKGYKLWCQNKHISKCFISRDVVFKVDEYYLKENGESSTSASSDHDA 1567
++RKC F+ Y +GVKGY+LW H K ISRDV+F D + GE S +
Sbjct: 660 KSRKCRFLGYADGVKGYRLWDPTAH--KVVISRDVIFVEDRL---QRGEVDDSTEKEKPE 714
Query: 1566 CAGIEVELADRTENQ*DYRLXXXXXXXXXXXXXXXXEALADYQLARDRTRRTRVAPTRYG 1387
I+VE ++ + A DR +R + Y
Sbjct: 715 TTQIQVEEEFEQDSS---------EAEPAHEEPEPESSGAPTTRQSDREKRRPTWHSDYV 765
Query: 1386 YADLISFALLTAETLEKNELASYEEACKCKERKEWRQAMQEEMDSLLKNKTWELVDKPVG 1207
+++ LLT E E ++++EA + +W AMQEE+++L KN TW+LV P G
Sbjct: 766 MEGNVAYCLLT----EDGEPSTFQEAINSSDVSQWTAAMQEEIEALHKNNTWDLVPLPQG 821
Query: 1206 QRLVSCKWIYKLKEDGSKDGKPRFKARLMARGLTQQAGIDFNEVFSPVVKHTSIRVLLAL 1027
++ + KW++K+K +G D R++ARL+ +G Q+ GIDFNE+FSPVV+ T++RV+LA+
Sbjct: 822 RKPIGNKWVFKIKRNGD-DQVERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTVRVVLAM 880
Query: 1026 VTQFDMELEQMDVKTTFLHGNLDEKIFMSQPKGFVKHGDAGKVCLLKKSLYGLRQSPRQW 847
F++ LEQ+DVKT FLHG+L+E+I+M QP+GF + VC L KSLYGL+Q+PR W
Sbjct: 881 CATFNLHLEQLDVKTAFLHGDLEEEIYMLQPEGFEDKENQNLVCRLNKSLYGLKQAPRCW 940
Query: 846 YLKFDEVMKKNNYLRSDFDSCVYIKWIDGGVGVFLLLYVDDMLIASTNMSEIRMLKTLLS 667
Y +FD + Y R + D C Y K V LLLYVDDML+A N I LK L+
Sbjct: 941 YKRFDSFIMCLGYNRLNADPCAYFKRFGKDNFVILLLYVDDMLVAGPNKDHIDELKAQLA 1000
Query: 666 KEFEMKDLGVAKRILGMEIKRNRNKGELFISQTSYILKLLNRFGMSQAKAVQTPLACHFK 487
+EFEMKDLG A +ILGM+I R+R ++++SQ +Y+ K+L+RF M K++ TPL + K
Sbjct: 1001 REFEMKDLGPANKILGMQIHRDRGNRKIWLSQKNYLKKILSRFSMQDCKSISTPLPINLK 1060
Query: 486 LSSALSPSTDDEKADMIQVPYASAIGSIMYSMVCTQPDLAYAASVVSRFMANPGRGHWEA 307
+SS++SPS ++ + +M +VPYASA+GS+M++M+CT+PD+A A VVSR+MANPGR HW
Sbjct: 1061 VSSSMSPSNEEGRMEMSRVPYASAVGSLMFAMICTRPDIAQAVGVVSRYMANPGREHWNC 1120
Query: 306 VKWVFRYLKGTSDYGLCYKRIS*ANEKEKLIGYVDSDYAGDLDKRRSLTGYVFTLFGCTI 127
VK + RY+KGTSD LCY + GYVDSDYAGDLDK +S TGYVF + G +
Sbjct: 1121 VKRILRYIKGTSDVALCY-----GGSDFIINGYVDSDYAGDLDKSKSTTGYVFKVAGGAV 1175
Query: 126 SWKATLQPVVXXXXXXXXXXXXXXAVKEAIWLQGLLGELG 7
SW + LQ VV A KEAIWL+ LL ELG
Sbjct: 1176 SWVSKLQAVVATSTTEAEYVAATQASKEAIWLKMLLEELG 1215
Score = 281 bits (720), Expect(2) = 0.0
Identities = 142/315 (45%), Positives = 206/315 (65%), Gaps = 1/315 (0%)
Frame = -3
Query: 2861 WILDSGCSFHMTPNKDWFETYKRIDGGKVLLGNNKPCSVIGIGTVRLKTHDGTERLLTEV 2682
W++DSG ++HMT K+WF Y+ I GG V ++ +IGIGT++LK +DGT + + +V
Sbjct: 282 WLIDSGATYHMTSRKEWFHHYEPISGGSVYSCDDHALEIIGIGTIKLKMYDGTVQTVQDV 341
Query: 2681 RHIPKLKRNLISLGMLDHHGYTYKGGDGVLKVFKGSMVVMKGVR-SNGLYTLQASTVIGI 2505
RH+ LK+NL+S G+LD+ + GV+K+F+G++VVMKG + + LY L+ T+
Sbjct: 342 RHVKGLKKNLLSYGILDNSATQIETQKGVMKIFQGALVVMKGEKIAANLYMLKGETLQEA 401
Query: 2504 AAIVTHAKLSKSQLWHRKLGHVSERGLQELQKQGLLYGDKVDKLEFCENCVFGKATRVKF 2325
A V + LWH+KLGH+S++G++ L +Q L+ G L CE+C+ K R+KF
Sbjct: 402 EASVAACSPDSTLLWHQKLGHMSDQGMKILVEQKLIPGLTKVSLPLCEHCITSKQHRLKF 461
Query: 2324 NNSTYTTRETLSYVHFDLWGPSRHETLGGGRYFISIIDDCSQKVWVYI*KTKDEAFSKFK 2145
+ S + L VH D+W + +LGG +YF+S IDD S++ WVY K K + F+ FK
Sbjct: 462 STSNSRGKVVLELVHSDVW-QAPVPSLGGAKYFVSFIDDYSRRCWVYPIKKKSDVFATFK 520
Query: 2144 AWKKMVEVQTGKKVKKLRTDNGLEFLNMEFDELCSKEGMVRHKTVKGTPQQNGLAERMNR 1965
A+K VE+ +GKK+K RTDNG E+ + EFD+ C KEG+ R TV TPQQNG+AERMNR
Sbjct: 521 AFKARVELDSGKKIKCFRTDNGGEYTSEEFDDFCKKEGIKRQFTVAYTPQQNGVAERMNR 580
Query: 1964 TLLERVRCMLFSANM 1920
TLLER R ML +A +
Sbjct: 581 TLLERTRAMLRAAGL 595
Score = 117 bits (292), Expect = 8e-23
Identities = 77/243 (31%), Positives = 127/243 (52%), Gaps = 13/243 (5%)
Frame = -2
Query: 3666 SKQEIEKFNGSNDFSLWKMKMLALLGNLGLDEALQGEAKMPTTY*DEKK------KAYNT 3505
+K EIEKFNG N FSLWK+K+ A+L D L ++ P + D+KK A
Sbjct: 3 AKFEIEKFNGKN-FSLWKLKVKAILRK---DNCLAAISERPVDFTDDKKWSEMNEDAMAD 58
Query: 3504 LILSLSDKILREVTKMKTSAEVWLKLESLYMTKTLSNCLYLKAKFFTFKMPDGKDLQNHI 3325
L LS++D +L + + KT+ E+W L LY K+L N ++LK K +T +M + + H+
Sbjct: 59 LYLSIADGVLSSIEEKKTANEIWDHLNRLYEAKSLHNKIFLKRKLYTLRMSESTSVTEHL 118
Query: 3324 DEFNKLYLDLENIQVEYDDEDKALVLLHSLPKSYETFVDILKHG--RETITLDDVVGALS 3151
+ N L+ L ++ + + +++A +LL SLP SY+ + L + + + DDV A+
Sbjct: 119 NTLNTLFSQLTSLSCKIEPQERAELLLQSLPDSYDQLIINLTNNILTDYLVFDDVAAAVL 178
Query: 3150 SKELQRKN----ELKEQTGEGL-VVQGRSDRREFXXXXXXXXXXXXXXXXXSYFCHEEGH 2986
+E +RKN ++ Q E L V++GRS R Y C ++GH
Sbjct: 179 EEESRRKNKEDRQVNLQQAEALTVMRGRSTER--GQSSGRGRSKSSKKNLTCYNCGKKGH 236
Query: 2985 IRR 2977
+++
Sbjct: 237 LKK 239
>gb|AAK38381.1|AC079028_5 polyprotein, putative [Arabidopsis thaliana]
Length = 855
Score = 501 bits (1289), Expect(2) = 0.0
Identities = 263/559 (47%), Positives = 353/559 (63%), Gaps = 20/559 (3%)
Frame = -2
Query: 1917 WGEAVNTAAYLINKCPSVAIGFKTPEEIWTGIPPSYDNLRICGCVAYAHTKEGKLEPRAR 1738
W E TA Y+IN+ PS AI PEE+W P Y +LR VAY H +GKL+PRA
Sbjct: 309 WAEVATTAVYIINRSPSAAIDHNVPEELWLNRKPGYKHLRRLRAVAYVHVDQGKLKPRAI 368
Query: 1737 KCMFVSYPEGVKGYKLWCQNKHISKCFISRDVVFKVDEYYLKENGE-------------- 1600
K +F+ YP G KGYK+W + KC ISR+V+F+ + Y N +
Sbjct: 369 KGIFIGYPSGTKGYKVWLLEEQ--KCVISRNVIFQEEVVYKDLNDKETVVKKEDIRTQTD 426
Query: 1599 -----SSTSASSDHDACAGIE-VELADRTENQ*DYRLXXXXXXXXXXXXXXXXEALADYQ 1438
S T SD IE E +D + Q +LA+YQ
Sbjct: 427 NHLVISKTKEVSDQGGVTHIEECEESDENDEQ------EPETVNETDPTVESEGSLANYQ 480
Query: 1437 LARDRTRRTRVAPTRYGYADLISFALLTAETLEKNELASYEEACKCKERKEWRQAMQEEM 1258
LA+DR RR P R+ ++FAL+ E+L E SY+EA + KE +W+ A EEM
Sbjct: 481 LAKDRVRRQINPPARFTEESGVAFALVVVESLSLEEPESYQEATQDKEWLKWKNATHEEM 540
Query: 1257 DSLLKNKTWELVDKPVGQRLVSCKWIYKLKEDGSKDGKPRFKARLMARGLTQQAGIDFNE 1078
DSL+KN TW+LVDKP ++++ C+W++KLK RFKARL+A+G TQ+ G+D+ E
Sbjct: 541 DSLIKNGTWDLVDKPTNRKIIGCRWLFKLKSGIPGVEPVRFKARLVAKGYTQREGVDYQE 600
Query: 1077 VFSPVVKHTSIRVLLALVTQFDMELEQMDVKTTFLHGNLDEKIFMSQPKGFVKHGDAGKV 898
+F+PVVKHTSIRVL+++V DMELEQMDVKT FLHG+L+E+++M QP+GF+ KV
Sbjct: 601 IFAPVVKHTSIRVLMSVVVDQDMELEQMDVKTAFLHGDLEEELYMEQPEGFITDKTKDKV 660
Query: 897 CLLKKSLYGLRQSPRQWYLKFDEVMKKNNYLRSDFDSCVYIKWIDGGVGVFLLLYVDDML 718
CLLKKSLYGL+QSPRQW +F M + ++RS D+CVY+K ++ G V+LLLYVDDML
Sbjct: 661 CLLKKSLYGLKQSPRQWNKRFGRFMMEQKFIRSAHDACVYVKQVEQGF-VYLLLYVDDML 719
Query: 717 IASTNMSEIRMLKTLLSKEFEMKDLGVAKRILGMEIKRNRNKGELFISQTSYILKLLNRF 538
IA + +E+ M+K LS EFEMKD+G A RILG +I R+R KG L +SQ YI K++ RF
Sbjct: 720 IAGKSKAEVNMIKEQLSVEFEMKDMGPASRILGKDITRDRKKGILRLSQAPYIRKIVQRF 779
Query: 537 GMSQAKAVQTPLACHFKLSSALSPSTDDEKADMIQVPYASAIGSIMYSMVCTQPDLAYAA 358
+ +A+ V+TP+ HFKL + DDE D QVPY+SA+GSIMY+M+ T+PDLAYA
Sbjct: 780 NLDEARVVRTPIGAHFKLPAV---REDDECIDTEQVPYSSAVGSIMYAMIGTRPDLAYAI 836
Query: 357 SVVSRFMANPGRGHWEAVK 301
+VSR+M+ PG HW+AVK
Sbjct: 837 CLVSRYMSRPGSLHWDAVK 855
Score = 293 bits (751), Expect(2) = 0.0
Identities = 144/300 (48%), Positives = 200/300 (66%), Gaps = 1/300 (0%)
Frame = -3
Query: 2831 MTPNKDWFETYKRIDGGKVLLGNNKPCSVIGIGTVRLKTHDGTERLLTEVRHIPKLKRNL 2652
MT +DWF +++ D K+LLG++ G G++RL TH GT +L V+++P L+RNL
Sbjct: 1 MTSRRDWFCSFQEKDTTKILLGDDHSVESQGQGSIRLDTHGGTITILENVKYVPNLRRNL 60
Query: 2651 ISLGMLDHHGYTYKGGDGVLKVFKGSMVVMKGVRSNGLYTLQASTVIGIAAIVTHAKLSK 2472
IS G LD GY ++GGDG ++ +K + ++G S GLY L +TVI + I +K
Sbjct: 61 ISTGTLDRLGYKHEGGDGQVRYYKNNKTALRGSLSGGLYVLDGNTVIAESCIAERSK-EL 119
Query: 2471 SQLWHRKLGHVSERGLQELQKQGLLYGDKVDKLEFCENCVFGKATRVKFNNSTYTTRETL 2292
+ LWH +LGH+ ++ L +GL+ + LEF E+CV GKA +V FN + + E L
Sbjct: 120 TTLWHSRLGHMGGNNMKILAGKGLIKPSEATSLEFYEHCVMGKAKKVSFNIGKHNSEEIL 179
Query: 2291 SYVHFDLWGPSR-HETLGGGRYFISIIDDCSQKVWVYI*KTKDEAFSKFKAWKKMVEVQT 2115
SYVH DLWG ++ G +YF+SIIDD S+KVW+Y ++KDE F KF WK++VE QT
Sbjct: 180 SYVHADLWGSQNVTPSMSGNKYFLSIIDDKSRKVWLYFLRSKDETFDKFCEWKELVENQT 239
Query: 2114 GKKVKKLRTDNGLEFLNMEFDELCSKEGMVRHKTVKGTPQQNGLAERMNRTLLERVRCML 1935
K+VK LRTDNGLEF N++FD C K G+ RHKT TPQQNG+AERMNRT++E+VRC+L
Sbjct: 240 DKRVKCLRTDNGLEFCNIKFDSYCKKYGIERHKTCTYTPQQNGVAERMNRTVMEKVRCLL 299
>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1280
Score = 424 bits (1091), Expect(2) = 0.0
Identities = 225/468 (48%), Positives = 295/468 (63%), Gaps = 2/468 (0%)
Frame = -2
Query: 1917 WGEAVNTAAYLINKCPSVAIGFKTPEEIWTGIPPSYDNLRICGCVAYAHTKEGKLEPRAR 1738
W EAV+T YLIN+ PS A KTP E+W+G P +Y +LR+ GC AYAH GKLEPRA
Sbjct: 656 WAEAVSTTCYLINRSPSYATDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRAI 715
Query: 1737 KCMFVSYPEGVKGYKLWCQNKHISKCFISRDVVFKVDEYYLKENGESSTSASSDHDACAG 1558
KC+F+ YP GVKGYKLWC K ISR+VVF + L + ++ S A
Sbjct: 716 KCIFLGYPSGVKGYKLWCPET--KKVVISRNVVFH-ESVILHDKPSTNVPVESQEKASVQ 772
Query: 1557 IEVELADRTENQ*DYRLXXXXXXXXXXXXXXXXEALADYQLARDRTRRTRVAPTRY-GYA 1381
+E ++ + + + + +A+D+ +R P RY A
Sbjct: 773 VEHLISSGHAPEKENVAINQDAPVIEDSDSSIVQQSSKRSIAKDKPKRNIKPPRRYIEEA 832
Query: 1380 DLISFALLTAETLEKN-ELASYEEACKCKERKEWRQAMQEEMDSLLKNKTWELVDKPVGQ 1204
+++++AL AE +E N E ++Y EA + W AM +EM+SL KN TWE V P +
Sbjct: 833 NIVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLKKNHTWEFVKLPKEK 892
Query: 1203 RLVSCKWIYKLKEDGSKDGKPRFKARLMARGLTQQAGIDFNEVFSPVVKHTSIRVLLALV 1024
+ + CKWI+K KE S + R+KARL+A+G +Q GIDFN+VFSP++KH+SIR LL +V
Sbjct: 893 KPIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQIPGIDFNDVFSPIMKHSSIRTLLGIV 952
Query: 1023 TQFDMELEQMDVKTTFLHGNLDEKIFMSQPKGFVKHGDAGKVCLLKKSLYGLRQSPRQWY 844
D ELEQMDVKT FLHG L+E I+M QP+GFV G VC LKKSLYGL+QSPRQWY
Sbjct: 953 AMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVLGKENLVCRLKKSLYGLKQSPRQWY 1012
Query: 843 LKFDEVMKKNNYLRSDFDSCVYIKWIDGGVGVFLLLYVDDMLIASTNMSEIRMLKTLLSK 664
+FD M + RS++DSCVY+K +DG ++LLLYVDDMLIA+ + SEI LK LS
Sbjct: 1013 KRFDSFMLSQKFRRSNYDSCVYLKVVDGS-AIYLLLYVDDMLIAAKDKSEIAKLKAQLSS 1071
Query: 663 EFEMKDLGVAKRILGMEIKRNRNKGELFISQTSYILKLLNRFGMSQAK 520
EF MKDLG AK+ILGMEI R R+ G+L++SQ YI K+L RF M K
Sbjct: 1072 EFGMKDLGAAKKILGMEITRERHSGKLYLSQKGYIKKVLRRFNMHDVK 1119
Score = 367 bits (943), Expect(2) = 0.0
Identities = 189/353 (53%), Positives = 243/353 (68%), Gaps = 7/353 (1%)
Frame = -3
Query: 2957 KDKEVEQVNAIVEDDYESADVLVVATDKCDK---QWILDSGCSFHMTPNKDWFETYKRID 2787
K K+ E+ A V D +S L+VA C + QWILD+ ++HM PN+DWF TY+ +
Sbjct: 300 KGKKEEEGKAAVVTDEKSDTELLVAYAGCAQTSDQWILDTAWTYHMCPNRDWFATYEALQ 359
Query: 2786 GGKVLLGNNKPCSVIGIGTVRLKTHDGTERLLTEVRHIPKLKRNLISLGMLDHHGYTYKG 2607
GG VL+G++ PC V GIGTV++K DG R L++VRHIP LKR+LISL LD GY Y G
Sbjct: 360 GGTVLMGDDTPCEVAGIGTVQIKMFDGYIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSG 419
Query: 2606 GDGVLKVFKGSMVVMKG-VRSNGLYTLQASTVIGIAAIVTHAKLSKSQ---LWHRKLGHV 2439
GDG+LKV KGS+VVMK ++S LY L+ +T++G A V+ + LS S LWH +LGH+
Sbjct: 420 GDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDS-LSNSDATNLWHMRLGHM 478
Query: 2438 SERGLQELQKQGLLYGDKVDKLEFCENCVFGKATRVKFNNSTYTTRETLSYVHFDLWGPS 2259
SE GL EL K+ LL G + KL+FCE+C+FGK RVKFN ST+TT L YVH DLWGP+
Sbjct: 479 SEIGLAELSKRELLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPA 538
Query: 2258 RHETLGGGRYFISIIDDCSQKVWVYI*KTKDEAFSKFKAWKKMVEVQTGKKVKKLRTDNG 2079
+ GG RY ++I+DD S+KVW Y K K +AF FK WK MVE QT KKVK LRTDNG
Sbjct: 539 CKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTEKKVKILRTDNG 598
Query: 2078 LEFLNMEFDELCSKEGMVRHKTVKGTPQQNGLAERMNRTLLERVRCMLFSANM 1920
+EF + F C EG+V H TV TPQQNG+AERMN ++ + RCML +A++
Sbjct: 599 MEFCSKIFKSYCKSEGIVHHYTVPHTPQQNGVAERMNMAIISKARCMLSNADL 651
Score = 144 bits (364), Expect = 4e-31
Identities = 87/217 (40%), Positives = 130/217 (59%), Gaps = 7/217 (3%)
Frame = -2
Query: 3699 ARGKVCMAATTSKQEIEKFNGSNDFSLWKMKMLALLGNLGLDEALQGEAKMPTTY*-DEK 3523
A G + MA+ K ++ + FSLW++KM A+L LD+AL G K + DEK
Sbjct: 30 AEGLIPMASL--KYDLPLLDRDTRFSLWQVKMRAVLAQQDLDDALSGFDKRTQDWSNDEK 87
Query: 3522 KK---AYNTLILSLSDKILREVTKMKTSAEVWLKLESLYMTKTLSNCLYLKAKFFTFKMP 3352
KK A + + L LS+ IL+EV K +T+A +WLKLE + MTK L++ ++LK K F K+
Sbjct: 88 KKDRKAMSYIHLHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQ 147
Query: 3351 DGKDLQNHIDEFNKLYLDLENIQVEYDDEDKALVLLHSLPKSYETFVDILKHGRETITLD 3172
D + +H+ F ++ DLE+I+V+YD+ED L+LL SLP SY F D + + +T+ L
Sbjct: 148 DDGSVMDHLSTFKEIVADLESIEVKYDEEDLGLILLCSLPSSYANFRDTILYSHDTLILK 207
Query: 3171 DVVGALSSKELQRK---NELKEQTGEGLVVQGRSDRR 3070
+V AL +KE +K +E EGLVV+GR +
Sbjct: 208 EVYDALHAKEKMKKMVPSEGSNSQAEGLVVRGRQQEK 244
Score = 84.3 bits (207), Expect = 6e-13
Identities = 41/73 (56%), Positives = 50/73 (68%)
Frame = -2
Query: 228 KEKLIGYVDSDYAGDLDKRRSLTGYVFTLFGCTISWKATLQPVVXXXXXXXXXXXXXXAV 49
++ +GYVDSD+AGDLD+RRSLTGYVFT+ GC +SWKA+LQ V A
Sbjct: 1125 RDGFVGYVDSDFAGDLDRRRSLTGYVFTIGGCDVSWKASLQATVALSTTEAEYMAISEAC 1184
Query: 48 KEAIWLQGLLGEL 10
KEAIWL+GL EL
Sbjct: 1185 KEAIWLRGLYTEL 1197
>gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Japonica Group]
gi|20087076|gb|AAM10749.1|AC112514_2 Putative
retroelement [Oryza sativa Japonica Group]
Length = 1225
Score = 432 bits (1112), Expect(2) = 0.0
Identities = 256/638 (40%), Positives = 340/638 (53%), Gaps = 2/638 (0%)
Frame = -2
Query: 1917 WGEAVNTAAYLINKCPSVAIGFKTPEEIWTGIPPSYDNLRICGCVAYAHTKEGKLEPRAR 1738
W EAV+TA YLIN+ PS AI KTP ++W+G P +Y +LR+ GC+AYAH KLEPRA
Sbjct: 582 WAEAVSTACYLINRSPSYAIDKKTPIKVWSGSPANYSDLRVFGCIAYAHVDNSKLEPRAI 641
Query: 1737 KCMFVSYPEGVKGYKLWCQNKHISKCFISRDVVFKVDEYYLKENGESSTSASSDHDACAG 1558
KC+F+ YP GVKGYKLWC K ISR+VVF + L + ++ S A
Sbjct: 642 KCIFLGYPSGVKGYKLWCPET--KKVVISRNVVFH-ESVMLHDKPSTNVPVESQEKASVQ 698
Query: 1557 IEVELADRTENQ*DYRLXXXXXXXXXXXXXXXXEALADYQLARDRTRRTRVAPTRY-GYA 1381
+E ++ + + + + +A+D+ +R P RY A
Sbjct: 699 VEHLISSGHAPEKENVAINLDAPVIEDSDSSIVQQSPKHSIAKDKPKRNIKPPRRYIEEA 758
Query: 1380 DLISFALLTAETLEKN-ELASYEEACKCKERKEWRQAMQEEMDSLLKNKTWELVDKPVGQ 1204
+++++AL AE +E N E ++Y +A + W AM +EM+SL KN TWELV P +
Sbjct: 759 NIVAYALSVAEEIEGNVEPSTYSDAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPKEK 818
Query: 1203 RLVSCKWIYKLKEDGSKDGKPRFKARLMARGLTQQAGIDFNEVFSPVVKHTSIRVLLALV 1024
+ + CKWI+K KE S + R+KA +SIR LL++V
Sbjct: 819 KPIRCKWIFKRKEGMSPSDEARYKA-------------------------SSIRTLLSIV 853
Query: 1023 TQFDMELEQMDVKTTFLHGNLDEKIFMSQPKGFVKHGDAGKVCLLKKSLYGLRQSPRQWY 844
+D ELEQMDVKT FLHG L+E I+M QP+GFV G VC LKKSLYGL+QSPRQWY
Sbjct: 854 AMYDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQWY 913
Query: 843 LKFDEVMKKNNYLRSDFDSCVYIKWIDGGVGVFLLLYVDDMLIASTNMSEIRMLKTLLSK 664
+FD M + RS++DSCVY+K +DG ++LLLYV+DMLIA+ + EI LK LS
Sbjct: 914 KRFDSFMLSQKFRRSNYDSCVYLKVVDGS-AIYLLLYVNDMLIAAKDKLEIAKLKAQLSS 972
Query: 663 EFEMKDLGVAKRILGMEIKRNRNKGELFISQTSYILKLLNRFGMSQAKAVQTPLACHFKL 484
EFEMKDLG AK+ILGMEI R R G+L++SQ
Sbjct: 973 EFEMKDLGAAKKILGMEITRERRSGKLYLSQKD--------------------------- 1005
Query: 483 SSALSPSTDDEKADMIQVPYASAIGSIMYSMVCTQPDLAYAASVVSRFMANPGRGHWEAV 304
L P +D + M +VPY+SA+GS+MY+M
Sbjct: 1006 ---LCPQSDYDIEYMSRVPYSSAVGSLMYAMF---------------------------- 1034
Query: 303 KWVFRYLKGTSDYGLCYKRIS*ANEKEKLIGYVDSDYAGDLDKRRSLTGYVFTLFGCTIS 124
++ L+GYVDSD+AGDLD+RRSLTGYVFT+ GC +S
Sbjct: 1035 ----------------------GRSRDGLVGYVDSDFAGDLDRRRSLTGYVFTIGGCAVS 1072
Query: 123 WKATLQPVVXXXXXXXXXXXXXXAVKEAIWLQGLLGEL 10
WKA+LQ V A KEAIWL+GL EL
Sbjct: 1073 WKASLQATVALSTTKAEYMAISEACKEAIWLRGLYTEL 1110
Score = 315 bits (808), Expect(2) = 0.0
Identities = 168/353 (47%), Positives = 218/353 (61%), Gaps = 7/353 (1%)
Frame = -3
Query: 2957 KDKEVEQVNAIVEDDYESADVLVVATDKCDK---QWILDSGCSFHMTPNKDWFETYKRID 2787
K K+ E+ A V D +S L+VA C + QWILD+ C++HM N+DWF TY+ +
Sbjct: 265 KGKKEEEGKAAVVTDEKSDAKLLVAYAGCAQTSDQWILDTACTYHMCSNRDWFATYEAVQ 324
Query: 2786 GGKVLLGNNKPCSVIGIGTVRLKTHDGTERLLTEVRHIPKLKRNLISLGMLDHHGYTYKG 2607
GG VL+G++ PC V G Y Y G
Sbjct: 325 GGTVLMGDDTPCEVAG---------------------------------------YKYSG 345
Query: 2606 GDGVLKVFKGSMVVMKG-VRSNGLYTLQASTVIGIAAIVTHAKLSKSQ---LWHRKLGHV 2439
GDG+LKV KGS+VVMK ++S LY L+ +T++G A V+ + LS S LWH +LGH+
Sbjct: 346 GDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDS-LSNSDATNLWHMRLGHM 404
Query: 2438 SERGLQELQKQGLLYGDKVDKLEFCENCVFGKATRVKFNNSTYTTRETLSYVHFDLWGPS 2259
SE GL EL K+GLL G + KL+FCE+C+FGK RVKFN ST+TT L YVH DLWGP+
Sbjct: 405 SEIGLAELSKRGLLDGQSIKKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPA 464
Query: 2258 RHETLGGGRYFISIIDDCSQKVWVYI*KTKDEAFSKFKAWKKMVEVQTGKKVKKLRTDNG 2079
R + GG RY ++I+DD S+KVW Y K K +AF FK WK MVE QT +KVK LRTDNG
Sbjct: 465 RKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNG 524
Query: 2078 LEFLNMEFDELCSKEGMVRHKTVKGTPQQNGLAERMNRTLLERVRCMLFSANM 1920
++F + F C EG+VRH TV TPQQNG+AERMNRT++ + RCML +A +
Sbjct: 525 MDFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCMLSNAGL 577
>gb|AAP53216.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1262
Score = 432 bits (1112), Expect(2) = 0.0
Identities = 256/638 (40%), Positives = 340/638 (53%), Gaps = 2/638 (0%)
Frame = -2
Query: 1917 WGEAVNTAAYLINKCPSVAIGFKTPEEIWTGIPPSYDNLRICGCVAYAHTKEGKLEPRAR 1738
W EAV+TA YLIN+ PS AI KTP ++W+G P +Y +LR+ GC+AYAH KLEPRA
Sbjct: 619 WAEAVSTACYLINRSPSYAIDKKTPIKVWSGSPANYSDLRVFGCIAYAHVDNSKLEPRAI 678
Query: 1737 KCMFVSYPEGVKGYKLWCQNKHISKCFISRDVVFKVDEYYLKENGESSTSASSDHDACAG 1558
KC+F+ YP GVKGYKLWC K ISR+VVF + L + ++ S A
Sbjct: 679 KCIFLGYPSGVKGYKLWCPET--KKVVISRNVVFH-ESVMLHDKPSTNVPVESQEKASVQ 735
Query: 1557 IEVELADRTENQ*DYRLXXXXXXXXXXXXXXXXEALADYQLARDRTRRTRVAPTRY-GYA 1381
+E ++ + + + + +A+D+ +R P RY A
Sbjct: 736 VEHLISSGHAPEKENVAINLDAPVIEDSDSSIVQQSPKHSIAKDKPKRNIKPPRRYIEEA 795
Query: 1380 DLISFALLTAETLEKN-ELASYEEACKCKERKEWRQAMQEEMDSLLKNKTWELVDKPVGQ 1204
+++++AL AE +E N E ++Y +A + W AM +EM+SL KN TWELV P +
Sbjct: 796 NIVAYALSVAEEIEGNVEPSTYSDAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPKEK 855
Query: 1203 RLVSCKWIYKLKEDGSKDGKPRFKARLMARGLTQQAGIDFNEVFSPVVKHTSIRVLLALV 1024
+ + CKWI+K KE S + R+KA +SIR LL++V
Sbjct: 856 KPIRCKWIFKRKEGMSPSDEARYKA-------------------------SSIRTLLSIV 890
Query: 1023 TQFDMELEQMDVKTTFLHGNLDEKIFMSQPKGFVKHGDAGKVCLLKKSLYGLRQSPRQWY 844
+D ELEQMDVKT FLHG L+E I+M QP+GFV G VC LKKSLYGL+QSPRQWY
Sbjct: 891 AMYDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQWY 950
Query: 843 LKFDEVMKKNNYLRSDFDSCVYIKWIDGGVGVFLLLYVDDMLIASTNMSEIRMLKTLLSK 664
+FD M + RS++DSCVY+K +DG ++LLLYV+DMLIA+ + EI LK LS
Sbjct: 951 KRFDSFMLSQKFRRSNYDSCVYLKVVDGS-AIYLLLYVNDMLIAAKDKLEIAKLKAQLSS 1009
Query: 663 EFEMKDLGVAKRILGMEIKRNRNKGELFISQTSYILKLLNRFGMSQAKAVQTPLACHFKL 484
EFEMKDLG AK+ILGMEI R R G+L++SQ
Sbjct: 1010 EFEMKDLGAAKKILGMEITRERRSGKLYLSQKD--------------------------- 1042
Query: 483 SSALSPSTDDEKADMIQVPYASAIGSIMYSMVCTQPDLAYAASVVSRFMANPGRGHWEAV 304
L P +D + M +VPY+SA+GS+MY+M
Sbjct: 1043 ---LCPQSDYDIEYMSRVPYSSAVGSLMYAMF---------------------------- 1071
Query: 303 KWVFRYLKGTSDYGLCYKRIS*ANEKEKLIGYVDSDYAGDLDKRRSLTGYVFTLFGCTIS 124
++ L+GYVDSD+AGDLD+RRSLTGYVFT+ GC +S
Sbjct: 1072 ----------------------GRSRDGLVGYVDSDFAGDLDRRRSLTGYVFTIGGCAVS 1109
Query: 123 WKATLQPVVXXXXXXXXXXXXXXAVKEAIWLQGLLGEL 10
WKA+LQ V A KEAIWL+GL EL
Sbjct: 1110 WKASLQATVALSTTKAEYMAISEACKEAIWLRGLYTEL 1147
Score = 295 bits (755), Expect(2) = 0.0
Identities = 159/336 (47%), Positives = 205/336 (61%), Gaps = 7/336 (2%)
Frame = -3
Query: 2957 KDKEVEQVNAIVEDDYESADVLVVATDKCDK---QWILDSGCSFHMTPNKDWFETYKRID 2787
K K+ E+ A V D +S L+VA C + QWILD+ C++HM N+DWF TY+ +
Sbjct: 319 KGKKEEEGKAAVVTDEKSDAKLLVAYAGCAQTSDQWILDTACTYHMCSNRDWFATYEAVQ 378
Query: 2786 GGKVLLGNNKPCSVIGIGTVRLKTHDGTERLLTEVRHIPKLKRNLISLGMLDHHGYTYKG 2607
GG VL+G++ PC V G Y Y G
Sbjct: 379 GGTVLMGDDTPCEVAG---------------------------------------YKYSG 399
Query: 2606 GDGVLKVFKGSMVVMKG-VRSNGLYTLQASTVIGIAAIVTHAKLSKSQ---LWHRKLGHV 2439
GDG+LKV KGS+VVMK ++S LY L+ +T++G A V+ + LS S LWH +LGH+
Sbjct: 400 GDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDS-LSNSDATNLWHMRLGHM 458
Query: 2438 SERGLQELQKQGLLYGDKVDKLEFCENCVFGKATRVKFNNSTYTTRETLSYVHFDLWGPS 2259
SE GL EL K+GLL G + KL+FCE+C+FGK RVKFN ST+TT L YVH DLWGP+
Sbjct: 459 SEIGLAELSKRGLLDGQSIKKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPA 518
Query: 2258 RHETLGGGRYFISIIDDCSQKVWVYI*KTKDEAFSKFKAWKKMVEVQTGKKVKKLRTDNG 2079
R + GG RY ++I+DD S+KVW Y K K +AF FK WK MVE QT +KVK LRTDNG
Sbjct: 519 RKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNG 578
Query: 2078 LEFLNMEFDELCSKEGMVRHKTVKGTPQQNGLAERM 1971
++F + F C EG+VRH TV TPQQNG+AER+
Sbjct: 579 MDFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERL 614