BLASTX nr result
ID: Akebia23_contig00008180
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Akebia23_contig00008180
(3679 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 1547 0.0
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V... 1527 0.0
ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [... 1502 0.0
ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Th... 1501 0.0
ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 1498 0.0
gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis] 1495 0.0
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum] 1459 0.0
gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum] 1441 0.0
ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 1440 0.0
ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 1433 0.0
ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis... 1430 0.0
gb|EYU28878.1| hypothetical protein MIMGU_mgv1a000505mg [Mimulus... 1429 0.0
emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum] 1417 0.0
ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [A... 1413 0.0
gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa... 1405 0.0
ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycoper... 1397 0.0
ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 1397 0.0
ref|XP_004498236.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 1397 0.0
gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tu... 1394 0.0
ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 1391 0.0
>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
Length = 1132
Score = 1547 bits (4005), Expect = 0.0
Identities = 770/1134 (67%), Positives = 910/1134 (80%), Gaps = 5/1134 (0%)
Frame = -3
Query: 3569 MGRTIQVSGFPSDVSKETVKDFLEKHIGKGSIIALKIRQTKKIRSNSSAYAIVQFESIKN 3390
MG+TIQV GFP+ V+ E VKDFLE G G++ ALK+R KK YAIVQF + +
Sbjct: 1 MGKTIQVFGFPAGVTAEAVKDFLESKTGGGTVYALKLRTPKK--GVGRLYAIVQFTTKEA 58
Query: 3389 AKDMSSLIYR--RLYFGTSYLKVRQMKDDVVPKPRVLMLSVEATALHFGCQISDERFFAL 3216
A + SL R +L++G SYL R+M+ D VP+PR M ++E LHFGC+IS+E+F L
Sbjct: 59 ADTIISLACRTEKLWYGRSYLNARRMEQDTVPRPRTFMHTMEHIELHFGCKISNEKFAVL 118
Query: 3215 WKAVDVIFNVGFGLRKLEFLLTHRHVEYKLELSYDSVWKIQLRHPQEQNTKFLLIQVSSA 3036
W+ V+V N GFG+RK+ FLL+H EY+LEL Y+++W+I+L P+ Q TK+LLIQ+ A
Sbjct: 119 WRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLLIQLLGA 178
Query: 3035 PRIYEKCLSSSGDICKDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSALCLELPNNSELP 2856
PRI++K + S + + P FN+F++ PDDQWVR TDFT S+ IGQS+ LC+ELP ELP
Sbjct: 179 PRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPYRLELP 238
Query: 2855 GICENFHNYKEDDGLFFLEIGSTFSHSTDLVPTVGPPQGLELPYNILFKINSLVQNGYLA 2676
ENF YKE + F LE GS +S S DLVP VGPP G+ LPY ILFKIN LVQNG +A
Sbjct: 239 DFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQNGCVA 298
Query: 2675 GPTLDATFFRLVHPSYIP-NITHIERALEKLSHSKESCYEPVKWLSEQYKKYLTSKHNPK 2499
GP LD+ F+RLV P P +I+ IE AL+KL H KE CYEP +WL++QY+KY+TS+ P
Sbjct: 299 GPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPS 358
Query: 2498 SPSISLDDGLVYTRRVQVTPSKVYFCGPEINVSNRVLRKYHEAINNFIRVSFVDEDWEKM 2319
SP+ISLDDGLVY RVQVTPS+VYFCGPEINVSNRVLR + I+NF+R+SF+DED +K+
Sbjct: 359 SPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKI 418
Query: 2318 RSTDLSPRASTSQGKRHTDIYKRILSTLKNGIVIGDKKFEFLAFSSSQLRDNSVWMFAPL 2139
STDLSPR S++ T IY RILSTL+NGI+IGD+KFEFLAFSSSQLR++S WMFA
Sbjct: 419 HSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASR 478
Query: 2138 NEITAANIREWMGDFREIRNVAKYSARLGQSFSSSMKSLTVHKHEIETIPDVEIEKNGKK 1959
+TAA IREWMG+FREIRNVAKY+ARLGQSFSSS ++L+VH EIE IPDV+IE K
Sbjct: 479 YGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTK 538
Query: 1958 YVFSDGIGKISAKFAQRVATKCGIQSSTPSAFQIRYGGYKGVVAVDPTSVNKLSLRKSMS 1779
YVFSDGIGK+SA+FA++VA+KCG++ + PSAFQIRYGGYKGVVA DPTS KLSLR SM
Sbjct: 539 YVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMR 598
Query: 1778 KYVSKNTSLDVLTWSKFQPCFLNRQLITLLSTLGVKDRIFEKKQKEAVDQLDVILTDPLR 1599
KY S+ T LDVL WSK+QPCFLNRQLI+LLSTLG+ D IFEKKQ+EAV QLD ILTDPL+
Sbjct: 599 KYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLK 658
Query: 1598 AQEALEIMSSGEGIDVLKEMLKCGYKPDVEPFLSMMLQTFRASKLLDLRNKTRIFLPKGR 1419
AQEALE+MS GE ++LKE+L CGYKPD EPFLSMMLQTFRASKLL+LR KTRIF+P GR
Sbjct: 659 AQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGR 718
Query: 1418 SMMGCLDETGTLEYGQVFVQVSRVGNKQF-GNNAL-STSRGNESNQGSLIVEEKVFVAKN 1245
SMMGCLDET TL YGQVFVQ+S G +Q G ++L S+SR + IV+ V VAKN
Sbjct: 719 SMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQ----RFIVQGLVVVAKN 774
Query: 1244 PCLHPGDVRILQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPELIP 1065
PCLHPGDVR+L+AVNVPAL HMVDCVVFPQKG RPHPNECSGSDLDGDIYFVCWD ELIP
Sbjct: 775 PCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIP 834
Query: 1064 PHQVTPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKARSD 885
P Q PMDYTPAQS+ LDHDV IE+V+EYFTNYIVNDSLGIIANAHT FAD+EP KARS+
Sbjct: 835 PQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPHKARSE 894
Query: 884 ACIELAMKFSIAVDFPKTGVPAEIPSHLHVKEYPDFMEKLNKPTYESRCVIGKLFREVKD 705
C++LA KFSIAVDFPKTGVPAEIP HL+VKEYPDFMEK +KPTYES+ VIGKLFR VKD
Sbjct: 895 PCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKD 954
Query: 704 IAPRTSCITAFTKEVAQRSYDRDMEVDGFEDYIDDAYYYKGEYDLKLGNMMDYYGIKTES 525
IAP TSCI FTKEVA+RSYD DMEVDGFED+IDDA Y+KG YD KLGN+MDYYGIKTE+
Sbjct: 955 IAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEA 1014
Query: 524 EILGGSIMKMSKTFDRRRDVEAIGAAVKALKKEARTWFDEKNNTESGSQEDDVYKKASAW 345
EIL GSIMKMSK+F +RRD EAIG AV+AL+KEAR WF EK+ +++ EDD Y KASAW
Sbjct: 1015 EILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDT---EDDAYAKASAW 1071
Query: 344 YHVTYHPDYWGCYNEGMERDHYLSFPWCVYDKLIEIKQKKNSERNLNHSLEIQF 183
YHVTYHPDYWGCYN GM RDH+LSFPWCVYD+L+EIK+ K S N +LE QF
Sbjct: 1072 YHVTYHPDYWGCYNHGMNRDHFLSFPWCVYDRLVEIKKDKTSIGNAFPALEQQF 1125
>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
Length = 1121
Score = 1527 bits (3954), Expect = 0.0
Identities = 771/1126 (68%), Positives = 903/1126 (80%), Gaps = 2/1126 (0%)
Frame = -3
Query: 3569 MGRTIQVSGFPSDVSKETVKDFLEKHIGKGSIIALKIRQTKKIRSNSSAYAIVQFESIKN 3390
M +TIQV GFPS VS + +K+FLEK+ G+G+I AL+I+Q + S +A VQF S +
Sbjct: 1 MSKTIQVYGFPSIVSADEIKEFLEKYTGEGTIEALEIKQPRS--GASMTHAKVQFTSFEL 58
Query: 3389 AKDMSSLIYRRLYFGTSYLKVRQMKDDVVPKPRVLMLSVEATALHFGCQISDERFFALWK 3210
A+ + +L +++++G +YLK R+M D++PKPR + S++ LHFGCQ+SDERF LWK
Sbjct: 59 AEFIITLCKKKVWYGRNYLKAREMDLDIIPKPRAFLHSMDRITLHFGCQMSDERFCVLWK 118
Query: 3209 AVDVIFNVGFGLRKLEFLLTHRHVEYKLELSYDSVWKIQLRHPQEQNTKFLLIQVSSAPR 3030
A++V G GLRK F L+H EYKLELSY+++W+IQL+HP+ Q TKFLLIQ+ AP+
Sbjct: 119 AINVSVKFGSGLRKFYFFLSHGSEEYKLELSYENIWQIQLQHPRGQITKFLLIQLLGAPQ 178
Query: 3029 IYEKCLSSSGDICKDPAFNY-FRDTPDDQWVRATDFTTSSCIGQSSALCLELPNNSELPG 2853
IYEK + P +Y F++ PDDQWVR DFT S IGQS ALCLELP S+LP
Sbjct: 179 IYEKDV---------PVLSYYFKEAPDDQWVREIDFTPSCFIGQSFALCLELPYGSQLPN 229
Query: 2852 ICENFHNYKEDDGLFFLEIGSTFSHSTDLVPTVGPPQGLELPYNILFKINSLVQNGYLAG 2673
ENF YKE+DG F LE GS++SH+ LVP +GPPQG LP+ ILFKIN+LVQNG L+G
Sbjct: 230 FRENFAYYKENDGKFILESGSSYSHNLHLVPILGPPQGSSLPFQILFKINTLVQNGCLSG 289
Query: 2672 PTLDATFFRLVHPSYIPNITHIERALEKLSHSKESCYEPVKWLSEQYKKYLTSKHNPKSP 2493
PTLD +FFRLV P P I+ IE ALEKL H KE CYEPV+WLSEQY+ Y+ K SP
Sbjct: 290 PTLDTSFFRLVDPERFP-ISFIEHALEKLYHLKECCYEPVRWLSEQYRTYV-KKPVAGSP 347
Query: 2492 SISLDDGLVYTRRVQVTPSKVYFCGPEINVSNRVLRKYHEAINNFIRVSFVDEDWEKMRS 2313
+ISLD GLVY RRVQ+TP KVYFCGPE+NVSNRVLR Y E I+NF+RVSF+DE+ EK+ S
Sbjct: 348 AISLDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENLEKIHS 407
Query: 2312 TDLSPRASTSQGKRHTDIYKRILSTLKNGIVIGDKKFEFLAFSSSQLRDNSVWMFAPLNE 2133
T +SPR S +G+R T +Y+RILS L+NGIVIGDKKF+FLAFSSSQLRDNS WMFA
Sbjct: 408 TVISPRMS-KEGRR-TGVYRRILSILQNGIVIGDKKFDFLAFSSSQLRDNSAWMFASRPG 465
Query: 2132 ITAANIREWMGDFREIRNVAKYSARLGQSFSSSMKSLTVHKHEIETIPDVEIEKNGKKYV 1953
+TAA IR WMGDF +IRNVAKY+ARLGQSFSSS ++L V K EIE IPD+EI K YV
Sbjct: 466 LTAAEIRSWMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKDEIENIPDIEIHKGRTTYV 525
Query: 1952 FSDGIGKISAKFAQRVATKCGIQSSTPSAFQIRYGGYKGVVAVDPTSVNKLSLRKSMSKY 1773
FSDGIGKIS + A RVA KCG +SSTPSAFQIRYGGYKGVVAVDPTS KLSLRKSM KY
Sbjct: 526 FSDGIGKISPQLAHRVAIKCGCKSSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMFKY 585
Query: 1772 VSKNTSLDVLTWSKFQPCFLNRQLITLLSTLGVKDRIFEKKQKEAVDQLDVILTDPLRAQ 1593
S NT+LDVL WSK+QP FLNRQLITLLSTLGVKD +FEKKQ+ AVDQLD IL DP+ AQ
Sbjct: 586 ESDNTNLDVLAWSKYQPSFLNRQLITLLSTLGVKDHVFEKKQRAAVDQLDTILKDPVAAQ 645
Query: 1592 EALEIMSSGEGIDVLKEMLKCGYKPDVEPFLSMMLQTFRASKLLDLRNKTRIFLPKGRSM 1413
EALE+MS GE +VLKEML CGYKPD EPFLSMMLQTFRA+KLL+LR KTRIF+P GRSM
Sbjct: 646 EALELMSPGENTNVLKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSM 705
Query: 1412 MGCLDETGTLEYGQVFVQVSRVGNKQ-FGNNALSTSRGNESNQGSLIVEEKVFVAKNPCL 1236
MGCLDET TLEYG+VFVQ+S G +Q FG++ + RG+ S+ + I+E K+ VAKNPCL
Sbjct: 706 MGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMF--RGSGSHHDNFILEGKIVVAKNPCL 763
Query: 1235 HPGDVRILQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPELIPPHQ 1056
HPGDVR+L AVNVP L HMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWD +LIPP Q
Sbjct: 764 HPGDVRVLWAVNVPTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDRDLIPPQQ 823
Query: 1055 VTPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKARSDACI 876
+ PMDYTPA + +LDHDV IEEV+EYFTNYIVNDSLGIIANAHT FADKE KA D C
Sbjct: 824 INPMDYTPAPTKVLDHDVMIEEVEEYFTNYIVNDSLGIIANAHTVFADKEYDKAYCDPCT 883
Query: 875 ELAMKFSIAVDFPKTGVPAEIPSHLHVKEYPDFMEKLNKPTYESRCVIGKLFREVKDIAP 696
ELA FSIAVDFPKTGVPAEIP +L VKEYPDFMEK +KPTYES+ VIGKLFREVKDIAP
Sbjct: 884 ELAKLFSIAVDFPKTGVPAEIPRNLRVKEYPDFMEKADKPTYESQSVIGKLFREVKDIAP 943
Query: 695 RTSCITAFTKEVAQRSYDRDMEVDGFEDYIDDAYYYKGEYDLKLGNMMDYYGIKTESEIL 516
I +FT++VA++SYD DMEV GFEDY+ DA+YYK EYD KLGN+MDYYGIKTESEIL
Sbjct: 944 HNCNIRSFTRDVARQSYDPDMEVVGFEDYVSDAFYYKSEYDYKLGNLMDYYGIKTESEIL 1003
Query: 515 GGSIMKMSKTFDRRRDVEAIGAAVKALKKEARTWFDEKNNTESGSQEDDVYKKASAWYHV 336
GSIM+MSK+FDRR+D EAIG AVK+L+KEARTWF+ K +E+ S+ DDVY KASAWYHV
Sbjct: 1004 SGSIMRMSKSFDRRKDAEAIGLAVKSLRKEARTWFN-KMGSETDSEADDVYAKASAWYHV 1062
Query: 335 TYHPDYWGCYNEGMERDHYLSFPWCVYDKLIEIKQKKNSERNLNHS 198
TYHPDYWGCYNEGM+RDH+LSFPWCVYDKLI K+KK S R+L+ S
Sbjct: 1063 TYHPDYWGCYNEGMDRDHFLSFPWCVYDKLIHTKRKKMSGRSLHLS 1108
>ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa]
gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
family protein [Populus trichocarpa]
Length = 1133
Score = 1502 bits (3888), Expect = 0.0
Identities = 751/1141 (65%), Positives = 900/1141 (78%), Gaps = 5/1141 (0%)
Frame = -3
Query: 3569 MGRTIQVSGFPSDVSKETVKDFLEKHIGKGSIIALKIRQTKKIRSNSSAYAIVQFESIKN 3390
M +T++VSGFPS + V+ FLE H G G++ ALKIR+ + + YAIVQF + +
Sbjct: 1 MSKTVKVSGFPSSTTAGAVQVFLESHTGGGTVEALKIREIRT--GGARKYAIVQFTTTRA 58
Query: 3389 AKDMSSLIYRRLYFGTSYLKVRQMKDDVVPKPRVLMLSVEATALHFGCQISDERFFALWK 3210
A+ + SL RL++G SYL R M D++P+PR + ++E+ LHFG Q S E+F A+W
Sbjct: 59 AEQIISLANPRLWYGHSYLNARPMDRDIIPQPRSFLHTMESVTLHFGYQTSKEKFSAVWS 118
Query: 3209 AVDVIFNVGFGLRKLEFLLTHRHVEYKLELSYDSVWKIQLRHPQEQNTKFLLIQVSSAPR 3030
+V N G G+RKL F L+H EYKL L ++++W+I+L P+ Q K+LLIQ+ APR
Sbjct: 119 GNNVSVNFGLGMRKLHFFLSHNLAEYKLNLLFENIWQIELHRPRGQTVKYLLIQLYGAPR 178
Query: 3029 IYEKCLSSSGDICKDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSALCLELPNNSELPGI 2850
IYE+ + SS ++ +DP NYFRD PD+QWVR TDFT S IG SS+LCLELPN+ +LP
Sbjct: 179 IYERDVPSSSNVFEDPLLNYFRDVPDEQWVRTTDFTPSCGIGHSSSLCLELPNHLQLPNF 238
Query: 2849 CENFHNYKEDDGLFFLEIGSTFSHSTDLVPTVGPPQGLELPYNILFKINSLVQNGYLAGP 2670
ENF YKE++G F LE G TFS + DLVP VGP G+ LPYNILF++N LVQNG LAG
Sbjct: 239 NENFFYYKENEGTFVLESGLTFSRNPDLVPIVGPSSGVNLPYNILFRVNLLVQNGCLAGS 298
Query: 2669 TLDATFFRLVHPSYIPNITHIERALEKLSHSKESCYEPVKWLSEQYKKYLTSKHNPKSPS 2490
LD F+RLV P+ +P + IE ALEKL H KE CYEP KW +EQYKKYLTS + P+SP
Sbjct: 299 MLDDIFYRLVDPNRMP-VRCIEYALEKLYHLKECCYEPSKWFNEQYKKYLTSGNPPRSPV 357
Query: 2489 ISLDDGLVYTRRVQVTPSKVYFCGPEINVSNRVLRKYHEAINNFIRVSFVDEDWEKMRST 2310
+SLD GLVY +VQ+TP KV+FCGPE+NVSNRVLR+Y E I+NF+RVSFVDE+ EK+ ST
Sbjct: 358 LSLDAGLVYVYKVQITPCKVFFCGPEVNVSNRVLRQYREDIDNFLRVSFVDEELEKIHST 417
Query: 2309 DLSPRASTSQGKRHTDIYKRILSTLKNGIVIGDKKFEFLAFSSSQLRDNSVWMFAPLNEI 2130
D+SPR S+ R T IY RILSTL+NGIVIGDKKFEFLAFSSSQLR+NS WMFA +
Sbjct: 418 DVSPRTSSRNELRRTAIYNRILSTLQNGIVIGDKKFEFLAFSSSQLRENSCWMFASRLGL 477
Query: 2129 TAANIREWMGDFREIRNVAKYSARLGQSFSSSMKSLTVHKHEIETIPDVEIEKNGKKYVF 1950
TAA+IR WMG F +IRNVA+Y+ARLGQSF SS ++L+V HEIE IPD+E+ + G +Y+F
Sbjct: 478 TAADIRAWMGSFHKIRNVARYAARLGQSFGSSTETLSVSSHEIEIIPDIEVSRGGTRYLF 537
Query: 1949 SDGIGKISAKFAQRVATKCGIQSSTPSAFQIRYGGYKGVVAVDPTSVNKLSLRKSMSKYV 1770
SDGIGKISA+FA++VA KCG + TPSAFQIRY GYKGVVAVDPTS KLSLR+SM KY
Sbjct: 538 SDGIGKISAEFARKVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSSKKLSLRRSMFKYE 597
Query: 1769 SKNTSLDVLTWSKFQPCFLNRQLITLLSTLGVKDRIFEKKQKEAVDQLDVILTDPLRAQE 1590
S+NT LDVL SK+QPCFLNRQLITLLSTLGV D FE+KQ+EAVDQLD +LTDPLRAQE
Sbjct: 598 SENTKLDVLAHSKYQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQLDAMLTDPLRAQE 657
Query: 1589 ALEIMSSGEGIDVLKEMLKCGYKPDVEPFLSMMLQTFRASKLLDLRNKTRIFLPKGRSMM 1410
ALE+MS GE ++LKEML CGY+PD EPFLSMMLQTFRASKLL+LR KTRIF+P GRSMM
Sbjct: 658 ALELMSPGENTNILKEMLLCGYQPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMM 717
Query: 1409 GCLDETGTLEYGQVFVQVSRVGNKQFGNNALSTSRGNESNQGS-LIVEEKVFVAKNPCLH 1233
GCLDET TLE+GQVFV+ S +F N S+ +E +G +++ V VAKNPCLH
Sbjct: 718 GCLDETRTLEHGQVFVKFS---GSRFRNLYDSSDMFSERGRGQCYLIKGSVVVAKNPCLH 774
Query: 1232 PGDVRILQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPELIPPHQV 1053
PGD+RIL+AV+VPAL HMVDCVVFPQKG RPHPNECSGSDLDGDIYFVCWDPELIP Q+
Sbjct: 775 PGDLRILKAVDVPALHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPELIPSQQI 834
Query: 1052 TPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKARSDACIE 873
+PMDYTP + LDHDVTIEEV+EYFTNYIVNDSLG+IANAHTA ADKE LKA S+ C+E
Sbjct: 835 SPMDYTPEPPLQLDHDVTIEEVEEYFTNYIVNDSLGVIANAHTAHADKESLKAMSEPCVE 894
Query: 872 LAMKFSIAVDFPKTGVPAEIPSHLHVKEYPDFMEKLNKPTYESRCVIGKLFREVKDIAPR 693
LA KFSIAVDFPKTGVPAEIPS+L +EYPDFMEK +KP+YESR VIGKLFREVKDIAPR
Sbjct: 895 LARKFSIAVDFPKTGVPAEIPSNLRAREYPDFMEKPDKPSYESRNVIGKLFREVKDIAPR 954
Query: 692 TSCITAFTKEVAQRSYDRDMEVDGFEDYIDDAYYYKGEYDLKLGNMMDYYGIKTESEILG 513
TS I +FT +VA++ YD DMEVDGFEDYIDDA+YYK YD KLGN+M+YYGIKTE+E+L
Sbjct: 955 TSSIRSFTSDVARQCYDPDMEVDGFEDYIDDAFYYKSNYDYKLGNLMEYYGIKTEAELLS 1014
Query: 512 GSIMKMSKTFDRRRDVEAIGAAVKALKKEARTWFDEKNNTESGSQEDDVYKKASAWYHVT 333
GS MKMSK+F ++RD EAIG AV++LKKEAR+WF+EK + SQ DDV KASAWYHVT
Sbjct: 1015 GSFMKMSKSFTKKRDAEAIGMAVRSLKKEARSWFNEK-GSGLDSQADDVDAKASAWYHVT 1073
Query: 332 YHPDYWGCYNEGMERDHYLSFPWCVYDKLIEIKQKKNSER----NLNHSLEIQFVRVLSL 165
YH +YWGCYNEGM RDH+LSFPWCVYDKLI+IK ++NS R + S+E QF R L L
Sbjct: 1074 YHHNYWGCYNEGMNRDHFLSFPWCVYDKLIQIK-RRNSARIRRSLILPSVERQFSRGLHL 1132
Query: 164 S 162
S
Sbjct: 1133 S 1133
>ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao]
gi|590697846|ref|XP_007045553.1| RNA-dependent RNA
polymerase 1 isoform 1 [Theobroma cacao]
gi|590697850|ref|XP_007045554.1| RNA-dependent RNA
polymerase 1 isoform 1 [Theobroma cacao]
gi|508709487|gb|EOY01384.1| RNA-dependent RNA polymerase
1 isoform 1 [Theobroma cacao] gi|508709488|gb|EOY01385.1|
RNA-dependent RNA polymerase 1 isoform 1 [Theobroma
cacao] gi|508709489|gb|EOY01386.1| RNA-dependent RNA
polymerase 1 isoform 1 [Theobroma cacao]
Length = 1109
Score = 1501 bits (3887), Expect = 0.0
Identities = 755/1136 (66%), Positives = 893/1136 (78%), Gaps = 1/1136 (0%)
Frame = -3
Query: 3569 MGRTIQVSGFPSDVSKETVKDFLEKHIGKGSIIALKIRQTKKIRSNSSAYAIVQFESIKN 3390
MG+TIQVS FPS+V E VK FLE + GK ++ ALKIRQ K + AYAIVQF +
Sbjct: 1 MGKTIQVSRFPSNVHAEEVKTFLELYTGKETVYALKIRQQK---NGGRAYAIVQFTKSTD 57
Query: 3389 AKDMSSLIYRRLYFGTSYLKVRQMKDDVVPKPRVLMLSVEATALHFGCQISDERFFALWK 3210
A+ + L +RLY+G+SYLK R+M++D+VPKPR + ++E LHFGCQ+S+E+F+ LW+
Sbjct: 58 AELIIRLTNQRLYYGSSYLKAREMENDIVPKPRTFLHTMEGVTLHFGCQVSNEKFYVLWE 117
Query: 3209 AVDVIFNVGFGLRKLEFLLTHRHVEYKLELSYDSVWKIQLRHPQEQNTKFLLIQVSSAPR 3030
VDV N G G+RKL+FLL+H VEY+L+L Y+++W+I+L P+ Q +K+LLIQ+ APR
Sbjct: 118 EVDVTVNFGMGMRKLQFLLSHHCVEYRLDLFYENIWQIELHRPRNQTSKYLLIQLFGAPR 177
Query: 3029 IYEKCLSSSGDICKDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSALCLELPNNSELPGI 2850
IYEK + SSG + ++P NYF D PDDQWVR TDFT SSCIGQSS LCLELP +LP
Sbjct: 178 IYEKDVRSSGLVFENPLLNYFMDVPDDQWVRTTDFTQSSCIGQSSVLCLELPYYLQLPNF 237
Query: 2849 CENFHNYKEDDGLFFLEIGSTFSHSTDLVPTVGPPQGLELPYNILFKINSLVQNGYLAGP 2670
ENF YKE +G F LE GS++S + +LVP VGP G++LPY ILFKIN LVQNG + GP
Sbjct: 238 RENFAYYKESEGKFVLESGSSYSRNLNLVPIVGPSLGIDLPYEILFKINLLVQNGCIPGP 297
Query: 2669 TLDATFFRLVHPSYIPNITHIERALEKLSHSKESCYEPVKWLSEQYKKYLTSKHNPKSPS 2490
LDA F+RLV+P I + +I+ ALEKL + KE C+EP KWL EQYK Y+ SK NP SP
Sbjct: 298 ALDANFYRLVNPCRIDKV-YIDHALEKLYYLKECCFEPSKWLLEQYKGYIASKKNPGSPV 356
Query: 2489 ISLDDGLVYTRRVQVTPSKVYFCGPEINVSNRVLRKYHEAINNFIRVSFVDEDWEKMRST 2310
ISLDDGLV RRVQ+TPS+VYFCGPEINVSNRVLR +H+ I+NF+R++FVDE+ EK+ ST
Sbjct: 357 ISLDDGLVNVRRVQITPSRVYFCGPEINVSNRVLRHFHDDIDNFLRITFVDEELEKIHST 416
Query: 2309 DLSPRASTSQGKRHTDIYKRILSTLKNGIVIGDKKFEFLAFSSSQLRDNSVWMFAPLNEI 2130
DL R R T+IY RILSTLKNGIVIGDK+FEFLAFSSSQLR+NS WMFA +
Sbjct: 417 DLLTR------NRITEIYGRILSTLKNGIVIGDKQFEFLAFSSSQLRENSAWMFASREGL 470
Query: 2129 TAANIREWMGDFREIRNVAKYSARLGQSFSSSMKSLTVHKHEIETIPDVEIEKNGKKYVF 1950
TAA+IR WMG+F +IRNVAKY+ARLGQSFSSS ++L+V K EIE I DVEI+++G YVF
Sbjct: 471 TAADIRTWMGEFSKIRNVAKYAARLGQSFSSSTETLSVAKDEIEIIDDVEIKRDGINYVF 530
Query: 1949 SDGIGKISAKFAQRVATKCGIQSSTPSAFQIRYGGYKGVVAVDPTSVNKLSLRKSMSKYV 1770
SDGIGKISAKFA++VA KC + TPSAFQIR GG+KGVVAVDPTS KLSLR SMSKY
Sbjct: 531 SDGIGKISAKFAKKVAAKCRLNGRTPSAFQIRIGGFKGVVAVDPTSSKKLSLRGSMSKYE 590
Query: 1769 SKNTSLDVLTWSKFQPCFLNRQLITLLSTLGVKDRIFEKKQKEAVDQLDVILTDPLRAQE 1590
S+NT LDVL WSK+QPCFLNRQLITLLSTLGV D FE+KQ+E VDQL+ ILTDPL+AQE
Sbjct: 591 SENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDHAFEEKQREVVDQLNAILTDPLKAQE 650
Query: 1589 ALEIMSSGEGIDVLKEMLKCGYKPDVEPFLSMMLQTFRASKLLDLRNKTRIFLPKGRSMM 1410
ALE+MS GE ++LKEML CGY+PD EPFLSMMLQTFRASKLL+LR K+RIF+ GRSMM
Sbjct: 651 ALELMSPGENTNILKEMLLCGYEPDAEPFLSMMLQTFRASKLLELRTKSRIFVANGRSMM 710
Query: 1409 GCLDETGTLEYGQVFVQVSRVGNKQFGNNALSTSRGNESNQGSLIVEEKVFVAKNPCLHP 1230
GCLDET TL+YGQVFVQVS G+ S Q IV+ KV VAKNPCLHP
Sbjct: 711 GCLDETRTLDYGQVFVQVS----------------GSRSEQ-RFIVQGKVVVAKNPCLHP 753
Query: 1229 GDVRILQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPELIPPHQVT 1050
GDVR+L AVNVP L HMVDCVVFPQKG RPHPNECSGSDLDGDIYFVCWDPELIP Q+
Sbjct: 754 GDVRVLTAVNVPDLHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPELIPSKQIP 813
Query: 1049 PMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKARSDACIEL 870
PMDY+PA + L+H+VTIEEV+EYFTNYIVNDSLGIIANAHT FAD+EP KA S C L
Sbjct: 814 PMDYSPAPTKPLEHEVTIEEVEEYFTNYIVNDSLGIIANAHTVFADREPRKAMSSECKWL 873
Query: 869 AMKFSIAVDFPKTGVPAEIPSHLHVKEYPDFMEKLNKPTYESRCVIGKLFREVKDIAPRT 690
A FSIAVDFPKTGVPAEIP L VKEYPDFMEK +KPTY+S VIGKLFREVKD+AP
Sbjct: 874 AKLFSIAVDFPKTGVPAEIPQELRVKEYPDFMEKPDKPTYQSYNVIGKLFREVKDLAPNE 933
Query: 689 SCITAFTKEVAQRSYDRDMEVDGFEDYIDDAYYYKGEYDLKLGNMMDYYGIKTESEILGG 510
I + T+E +R YD DMEVDG+EDY+DDA+Y+K YD KLGN+M+YYGIKTE+EIL G
Sbjct: 934 CFIRSLTRERLERFYDPDMEVDGYEDYVDDAFYHKSNYDYKLGNLMEYYGIKTEAEILSG 993
Query: 509 SIMKMSKTFDRRRDVEAIGAAVKALKKEARTWFDEKNNTESGSQEDDVYKKASAWYHVTY 330
IMKMS++F ++RD EAIG AV++L+KEAR+WF+EK N S+ DD+Y KASAWYHVTY
Sbjct: 994 GIMKMSRSFTKQRDAEAIGVAVRSLRKEARSWFNEKGN-GLDSEADDLYAKASAWYHVTY 1052
Query: 329 HPDYWGCYNEGMERDHYLSFPWCVYDKLIEIKQKKNSERNLN-HSLEIQFVRVLSL 165
HP YWG YNEGM R+H+LSFPWCVYDKLI IK+K S RN SLE F R L L
Sbjct: 1053 HPSYWGLYNEGMNRNHFLSFPWCVYDKLILIKKKVTSRRNSRLSSLESLFARGLRL 1108
>ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
Length = 1109
Score = 1498 bits (3877), Expect = 0.0
Identities = 760/1127 (67%), Positives = 905/1127 (80%), Gaps = 2/1127 (0%)
Frame = -3
Query: 3569 MGRTIQVSGFPSDVSKETVKDFLEKHIGKGSIIALKIRQTKKIRSNSSAYAIVQFESIKN 3390
MG+TIQV G PS+VS +K+FLEK+ G+G+I AL+I+Q K S +A VQF S++
Sbjct: 1 MGKTIQVYGVPSNVSANEIKEFLEKYTGEGTIEALEIKQPKS--GVSMTHAKVQFTSLRL 58
Query: 3389 AKDMSSLIYRRLYFGTSYLKVRQMKDDVVPKPRVLMLSVEATALHFGCQISDERFFALWK 3210
A+ + SL ++L++G +YLK R+M D++PKPR + S++ LHFG Q+S+ERF LWK
Sbjct: 59 AELIISLA-KQLWYGGNYLKAREMDLDIIPKPRTFLHSMDRITLHFGYQMSNERFCVLWK 117
Query: 3209 AVDVIFNVGFGLRKLEFLLTHRHVEYKLELSYDSVWKIQLRHPQEQNTKFLLIQVSSAPR 3030
A++V GFGLRK F L+H EYKLELS +++W+IQLR P+ QNTKFLLIQ+ AP+
Sbjct: 118 AINVSVKFGFGLRKFYFFLSHGSEEYKLELSCENIWQIQLREPRGQNTKFLLIQLLDAPQ 177
Query: 3029 IYEKCLSSSGDICKDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSALCLELPNNSELPGI 2850
IYEK +S A +YF++TPDDQWVR DFT S IGQSSALCLELP+ S+LP
Sbjct: 178 IYEKDVS---------ALSYFKETPDDQWVREIDFTPSCSIGQSSALCLELPHGSQLPNF 228
Query: 2849 CENFHNYKEDDGLFFLEIGSTFSHSTDLVPTVGPPQGLELPYNILFKINSLVQNGYLAGP 2670
CENF YKE+D F LE G++FS + LVP VGPPQG LP+ ILFKIN+LVQNG L+GP
Sbjct: 229 CENFARYKENDRKFILESGASFSGNLHLVPIVGPPQGSNLPFKILFKINTLVQNGCLSGP 288
Query: 2669 TLDATFFRLVHPSYIPNITHIERALEKLSHSKESCYEPVKWLSEQYKKYLTSKHNPKSPS 2490
TLD FFR V P I NI+ IE ALEKL + +E CYEPV+WL EQY+ Y+ SK SP+
Sbjct: 289 TLDTNFFRWVDPQRI-NISFIEHALEKLYYLEECCYEPVRWLHEQYRTYI-SKQVAGSPA 346
Query: 2489 ISLDDGLVYTRRVQVTPSKVYFCGPEINVSNRVLRKYHEAINNFIRVSFVDEDWEKMRST 2310
ISLD GLVY RRVQ+TP KVYFCGPE+NVSNRVLR Y E I+NF+RVSF+DE+ EK+ ST
Sbjct: 347 ISLDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENSEKIHST 406
Query: 2309 DLSPRASTSQGKRHTDIYKRILSTLKNGIVIGDKKFEFLAFSSSQLRDNSVWMFAPLNEI 2130
+SPR S ++G+R T +Y+RILS L+NGIVIGDKKF+FLA SSSQLRDNS WMFA +
Sbjct: 407 VISPRMS-NEGRR-TGVYRRILSILQNGIVIGDKKFDFLAVSSSQLRDNSAWMFASRPGL 464
Query: 2129 TAANIREWMGDFREIRNVAKYSARLGQSFSSSMKSLTVHKHEIETIPDVEIEKNGKKYVF 1950
TAA+IR MGDF +IRNVAKY+ARLGQSFSSS ++L V KHEIE IPD+E ++G YVF
Sbjct: 465 TAADIRSRMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKHEIEIIPDIETHRDGTTYVF 524
Query: 1949 SDGIGKISAKFAQRVATKCGIQSSTPSAFQIRYGGYKGVVAVDPTSVNKLSLRKSMSKYV 1770
SDGIGKISA+ A RVA KCG ++STPSAFQIRYGGYKGVVAVDPTS KLSLRKSM KY
Sbjct: 525 SDGIGKISAELAHRVAIKCGCKNSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMFKYE 584
Query: 1769 SKNTSLDVLTWSKFQPCFLNRQLITLLSTLGVKDRIFEKKQKEAVDQLDVILTDPLRAQE 1590
S+NT+LDVL+WSK++PCFLNRQLITLLSTLGVKD +FEKKQ+EAVDQLD IL DPLRAQE
Sbjct: 585 SENTNLDVLSWSKYRPCFLNRQLITLLSTLGVKDHVFEKKQREAVDQLDTILKDPLRAQE 644
Query: 1589 ALEIMSSGEGIDVLKEMLKCGYKPDVEPFLSMMLQTFRASKLLDLRNKTRIFLPKGRSMM 1410
ALE+MS GE ++LKEML CGYKPD EPFLSMMLQTFRA+KLL+LR KTRIF+P GRSMM
Sbjct: 645 ALELMSPGENTNILKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSMM 704
Query: 1409 GCLDETGTLEYGQVFVQVSRVGNKQ-FGNNALSTSRGNESNQGSLIVEEKVFVAKNPCLH 1233
GCLDET TLEYG+VFVQ+S G +Q FG++ + G+ S+ + I+E KV VAKNPCLH
Sbjct: 705 GCLDETRTLEYGEVFVQISGTGGRQSFGDSLM--FYGSGSHHDNFILEGKVVVAKNPCLH 762
Query: 1232 PGDVRILQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPELIPPHQV 1053
PGDVRIL AV+VPAL HMVDCVVFPQKG RPHP+ECSGSDLDGDIYFVCWD +LIPP Q+
Sbjct: 763 PGDVRILSAVDVPALHHMVDCVVFPQKGMRPHPDECSGSDLDGDIYFVCWDHDLIPPRQI 822
Query: 1052 TPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKARSDACIE 873
PMDYTPA + +LDHDV IEEV+EYFTNYI ND LGIIANAHT FADKE KA C E
Sbjct: 823 NPMDYTPAPTKVLDHDVMIEEVEEYFTNYIGNDKLGIIANAHTVFADKEYDKALCPPCKE 882
Query: 872 LAMKFSIAVDFPKTGVPAEIPSHLHVKEYPDFMEKLNKPTYESRCVIGKLFREVKDIAPR 693
LA FSIA++FPKTGVPAEIP HLHVKEYPDFMEK NKPTYES+ VIGKLFREVKD+AP
Sbjct: 883 LAKLFSIALEFPKTGVPAEIPFHLHVKEYPDFMEKANKPTYESQSVIGKLFREVKDVAPH 942
Query: 692 TSCITAFTKEVAQRSYDRDMEVDGFEDYIDDAYYYKGEYDLKLGNMMDYYGIKTESEILG 513
+ +FT++VA +SYD DMEVDGFEDY+ DA+YYK +YD KLG++MD GI+TESEIL
Sbjct: 943 NYDVRSFTRDVAMQSYDADMEVDGFEDYVRDAFYYKSQYDFKLGSLMDCCGIRTESEILS 1002
Query: 512 GSIMKMSKTFDRRRDVEAIGAAVKALKKEARTWFDEK-NNTESGSQEDDVYKKASAWYHV 336
GSIMKMSK+FD+R+D EAI AV++L+KEARTWF++ + T +G+ DDVY ASAWYHV
Sbjct: 1003 GSIMKMSKSFDKRKDAEAIALAVRSLRKEARTWFNKMGSGTYAGA--DDVYAIASAWYHV 1060
Query: 335 TYHPDYWGCYNEGMERDHYLSFPWCVYDKLIEIKQKKNSERNLNHSL 195
TYHP YWGCYNEGM DH+LSFPWCVYDKLI+IK+ K S R+L+ SL
Sbjct: 1061 TYHPYYWGCYNEGMYHDHFLSFPWCVYDKLIQIKRDKMSIRSLHLSL 1107
>gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis]
Length = 1133
Score = 1495 bits (3871), Expect = 0.0
Identities = 753/1137 (66%), Positives = 892/1137 (78%), Gaps = 2/1137 (0%)
Frame = -3
Query: 3569 MGRTIQVSGFPSDVSKETVKDFLEKHIGKGSIIALKIRQTKKIRSNSSAYAIVQFESIKN 3390
MG+TIQ+SGFPS VS E+VK+FLE H G+G++ A+KIR TK S +YAIVQF +++
Sbjct: 1 MGKTIQLSGFPSHVSAESVKEFLEGHTGRGTVYAIKIRPTKN--GGSRSYAIVQFMTVET 58
Query: 3389 AKDMSSLIYRRLYFGTSYLKVRQMKDDVVPKPRVLMLSVEATALHFGCQISDERFFALWK 3210
A+ + L RL++G SYL R M+ D+VPKPR + S++ LHFGCQIS E+F LW+
Sbjct: 59 AELIIRLANPRLWYGRSYLLARVMERDIVPKPRATLYSLQNVTLHFGCQISKEKFSFLWR 118
Query: 3209 AVDVIFNVGFGLRKLEFLLTHRHVEYKLELSYDSVWKIQLRHPQEQNTKFLLIQVSSAPR 3030
+V + G GLR+L F LT+ VEY+L+L Y++VW+I+L P+ Q K+LLIQ+ APR
Sbjct: 119 VGNVSVDFGLGLRRLNFYLTYGPVEYRLQLLYENVWQIELHRPRGQTAKYLLIQLLGAPR 178
Query: 3029 IYEKCLSSSGDICKDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSALCLELPNNSELPGI 2850
+YEK + S DI ++P FNYF+DTPDDQWVRATDFT S CIG SSAL LELP +LP +
Sbjct: 179 VYEKEVRISFDILENPLFNYFKDTPDDQWVRATDFTESCCIGHSSALYLELPYGVDLPDL 238
Query: 2849 CENFHNYKEDDGLFFLEIGSTFSHSTDLVPTVGPPQGLELPYNILFKINSLVQNGYLAGP 2670
ENF YKE + F LE GS+FS + DLVP VGPP G+ LP+ +FKIN L+QNG L+GP
Sbjct: 239 RENFVYYKESEERFILESGSSFSRNLDLVPIVGPPSGINLPFETVFKINMLLQNGCLSGP 298
Query: 2669 TLDATFFRLVHPSYIPNITHIERALEKLSHSKESCYEPVKWLSEQYKKYLTSKHNPKSPS 2490
TLD F+RLV P I N+ I ALEKL + KE YEP WL+EQY+KYLT+ PK P+
Sbjct: 299 TLDVDFYRLVDPQRIRNVDCINYALEKLFNLKECPYEPAAWLNEQYRKYLTAPRPPKPPA 358
Query: 2489 ISLDDGLVYTRRVQVTPSKVYFCGPEINVSNRVLRKYHEAINNFIRVSFVDEDWEKMRST 2310
I+LD GLVY RRVQVTPSKVYFCGPEINVSNRVLR+Y + I+ F+RVSFVDE+ EK+ ST
Sbjct: 359 IALDSGLVYVRRVQVTPSKVYFCGPEINVSNRVLREYIDYIDYFLRVSFVDEELEKLFST 418
Query: 2309 DLSPRASTSQGKRHTDIYKRILSTLKNGIVIGDKKFEFLAFSSSQLRDNSVWMFAPLNEI 2130
DLSPR S + R T IY+RILS L+NGI IGD+KFEFLAFSSSQLRDNS+WMFA ++
Sbjct: 419 DLSPRTSNANEDRRTGIYRRILSVLRNGIEIGDRKFEFLAFSSSQLRDNSLWMFAAVDGH 478
Query: 2129 TAANIREWMGDFREIRNVAKYSARLGQSFSSSMKSLTVHKHEIETIPDVEIEKNGKKYVF 1950
+A IR+W+GDFR IRNVAKY+ARLGQSF SS ++LTV + E E I D+EIE+ KYVF
Sbjct: 479 SADTIRQWIGDFRSIRNVAKYAARLGQSFGSSTETLTVDESETEVISDIEIERGAVKYVF 538
Query: 1949 SDGIGKISAKFAQRVATKCGIQSSTPSAFQIRYGGYKGVVAVDPTSVNKLSLRKSMSKYV 1770
SDGIGKIS+ FA+RVA KCG++ PSAFQIRY GYKGVVAVDPTS KLSLRKSM KY
Sbjct: 539 SDGIGKISSTFAKRVAKKCGLKDCVPSAFQIRYCGYKGVVAVDPTSSTKLSLRKSMWKYE 598
Query: 1769 SKNTSLDVLTWSKFQPCFLNRQLITLLSTLGVKDRIFEKKQKEAVDQLDVILTDPLRAQE 1590
S+ LDVL +SK Q C+LNRQLITLLSTLGV DR+FEKKQ+EAV QL+ IL DPLRA+E
Sbjct: 599 SELHKLDVLAYSKLQHCYLNRQLITLLSTLGVGDRVFEKKQREAVQQLNAILNDPLRARE 658
Query: 1589 ALEIMSSGEGIDVLKEMLKCGYKPDVEPFLSMMLQTFRASKLLDLRNKTRIFLPKGRSMM 1410
AL++MS+GE ++LKE+L CGY+P+ EPFLSMMLQ FRASKL +LR KTRI +P GR+MM
Sbjct: 659 ALDLMSAGETTNILKELLSCGYQPNAEPFLSMMLQAFRASKLQELRTKTRISIPDGRAMM 718
Query: 1409 GCLDETGTLEYGQVFVQVSRVGNKQFGNNALSTSRGNESNQGSLIVEEKVFVAKNPCLHP 1230
GCLDE TLEYG+VFVQ S + ++ F ++ G S Q ++V +V VAKNPCLHP
Sbjct: 719 GCLDEMRTLEYGEVFVQFSGITHRPFFEDSFMLG-GTGSGQNYIVV-GRVVVAKNPCLHP 776
Query: 1229 GDVRILQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPELIPPHQVT 1050
GDVR+L+AVNVPAL HMVDCVVFPQKG RPHPNECSGSDLDGDIYFVCWD ELIP Q
Sbjct: 777 GDVRVLRAVNVPALHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDDELIPQKQFE 836
Query: 1049 PMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKARSDACIEL 870
PMDY+PA + LDHDV IEEVQEYFTNYIVNDSLGIIANAHTAFADKEP KA S +CIEL
Sbjct: 837 PMDYSPAPTTRLDHDVRIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPSKAMSPSCIEL 896
Query: 869 AMKFSIAVDFPKTGVPAEIPSHLHVKEYPDFMEKLNKPTYESRCVIGKLFREVKDIAPRT 690
A FSIAVDFPKTGVPA IP L+VKEYPDFMEKLNKPTYES+ VIGKLFREVKDIAP
Sbjct: 897 ARLFSIAVDFPKTGVPAVIPQELYVKEYPDFMEKLNKPTYESQNVIGKLFREVKDIAPNV 956
Query: 689 SCITAFTKEVAQRSYDRDMEVDGFEDYIDDAYYYKGEYDLKLGNMMDYYGIKTESEILGG 510
+ FTKEVA RSYD DME DGFEDYIDDA+YYK YD KLGN++DYYGIK+E+EI+GG
Sbjct: 957 GSLHFFTKEVASRSYDPDMEYDGFEDYIDDAFYYKSNYDYKLGNLLDYYGIKSEAEIIGG 1016
Query: 509 SIMKMSKTFDRRRDVEAIGAAVKALKKEARTWFDEKNNTESGSQEDDVYKKASAWYHVTY 330
SIM+MSK+F +RRD E+I AV+AL+KEARTWF+EK ++ S DDVY KASAWY+VTY
Sbjct: 1017 SIMRMSKSFTKRRDAESINMAVRALRKEARTWFNEKGSS-LDSAADDVYAKASAWYYVTY 1075
Query: 329 HPDYWGCYNEGMERDHYLSFPWCVYDKLIEIKQKKNSERN--LNHSLEIQFVRVLSL 165
H YWGCYNEGM RDHYLSFPWCVYDKL++IK+ K S R SLE F R L L
Sbjct: 1076 HHSYWGCYNEGMNRDHYLSFPWCVYDKLVQIKRSKASVRRSLQMSSLERAFDRRLHL 1132
>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
Length = 1110
Score = 1459 bits (3777), Expect = 0.0
Identities = 733/1137 (64%), Positives = 889/1137 (78%), Gaps = 2/1137 (0%)
Frame = -3
Query: 3569 MGRTIQVSGFPSDVSKETVKDFLEKHIGKGSIIALKIRQTKKIRSNSSAYAIVQFESIKN 3390
MG+TIQV GF SDVS VK FLE + G+ ++ ALKIRQ KK + A+AIVQF +
Sbjct: 1 MGKTIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKIRQHKK---SGRAFAIVQFTRSSD 57
Query: 3389 AKDMSSLIYRRLYFGTSYLKVRQMKDDVVPKPRVLMLSVEATALHFGCQISDERFFALWK 3210
A + L +RLY+G SYLK R+M+ D+VPKPRV + ++E ++FGCQ+S+E+F+ LWK
Sbjct: 58 AGLIIRLANQRLYYGRSYLKAREMETDIVPKPRVFLHTMERVTVNFGCQVSEEKFYVLWK 117
Query: 3209 AVDVIFNVGFGLRKLEFLLTHRHVEYKLELSYDSVWKIQLRHPQEQNTKFLLIQVSSAPR 3030
A +V N G G+RKLEFLL++ +YKLEL Y+++W+I+LR P Q +K LLIQ+ APR
Sbjct: 118 ADNVTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQTSKHLLIQLFGAPR 177
Query: 3029 IYEKCLSSSGDICKDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSALCLELPNNSELPGI 2850
IYEK + +S + DP NYF+D PDDQWVR TDFT S+CIGQSS L LELP+N +LP
Sbjct: 178 IYEKEVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLWLELPHNLQLPNF 237
Query: 2849 CENFHNYKEDDGLFFLEIGSTFSHSTDLVPTVGPPQGLELPYNILFKINSLVQNGYLAGP 2670
ENF YKE++G LE GS++S + LVP V P + ++LP+ ILFK+N LVQNG + GP
Sbjct: 238 RENFAYYKENEGRLVLESGSSYSCNLSLVPIVCPSRVIDLPFEILFKVNLLVQNGCIPGP 297
Query: 2669 TLDATFFRLVHPSYIPNITHIERALEKLSHSKESCYEPVKWLSEQYKKYLTSKHNPKSPS 2490
LD TF+RLV P + + +I+ ALEKL + +E CYEP +WL E+YK + S+ SP+
Sbjct: 298 ALDDTFYRLVDPCRMHKV-YIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSPT 356
Query: 2489 ISLDDGLVYTRRVQVTPSKVYFCGPEINVSNRVLRKYHEAINNFIRVSFVDEDWEKMRST 2310
ISLD+GLVY RRVQ+TPS+VYFCGPEINVSNRVLR++H I+NF+R+SFVDE+ EK+ ST
Sbjct: 357 ISLDEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHST 416
Query: 2309 DLSPRASTSQGKRHTDIYKRILSTLKNGIVIGDKKFEFLAFSSSQLRDNSVWMFAPLNEI 2130
++ R R T IYKRILSTL+NGIVIG+K+FEFLAFSSSQLR+NS WMFA +
Sbjct: 417 NVQARG------RRTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKGL 470
Query: 2129 TAANIREWMGDFREIRNVAKYSARLGQSFSSSMKSLTVHKHEIETIPDVEIEKNGKKYVF 1950
TAA+IR WMG+F +IRNVAKY+ARLGQSFSSS ++L+V K EI IPD+EI K+G KYVF
Sbjct: 471 TAADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYVF 530
Query: 1949 SDGIGKISAKFAQRVATKCGIQSSTPSAFQIRYGGYKGVVAVDPTSVNKLSLRKSMSKYV 1770
SDGIGKISA+FA++VA KC ++ TPSAFQIR GG+KGVVA+DPTS KLSLRKSM KY
Sbjct: 531 SDGIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSMEKYE 590
Query: 1769 SKNTSLDVLTWSKFQPCFLNRQLITLLSTLGVKDRIFEKKQKEAVDQLDVILTDPLRAQE 1590
S+NT LDVL WSK+QPCFLNRQLITLLSTLGV DR FEKKQ+E VDQL+ +LTDPL AQE
Sbjct: 591 SENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDRAFEKKQREVVDQLNALLTDPLEAQE 650
Query: 1589 ALEIMSSGEGIDVLKEMLKCGYKPDVEPFLSMMLQTFRASKLLDLRNKTRIFLPKGRSMM 1410
ALE+MS GE ++LKEML CGYKPD EPFLSMML+TFRASKLL+LR K RIF+ KGRSMM
Sbjct: 651 ALELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGRSMM 710
Query: 1409 GCLDETGTLEYGQVFVQVSRVGNKQFGNNALSTSRGNESNQGSLIVEEKVFVAKNPCLHP 1230
GCLDET TL YGQVFVQ S G+ S + IV+ KV VAKNPCLHP
Sbjct: 711 GCLDETRTLNYGQVFVQFS----------------GSRSER-RFIVQGKVIVAKNPCLHP 753
Query: 1229 GDVRILQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPELIPPHQVT 1050
GDVR+L+AVNVP L HMVDCVVFPQKG RPHPNECSGSDLDGD+YFVCWDPELIP Q+
Sbjct: 754 GDVRVLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYKQID 813
Query: 1049 PMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKARSDACIEL 870
PMDY+PA + LDH+VTIEE++EYFTNYIVNDSLGII+NAHTAFAD+EP KA S C+EL
Sbjct: 814 PMDYSPASTTKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPDKAMSRPCLEL 873
Query: 869 AMKFSIAVDFPKTGVPAEIPSHLHVKEYPDFMEKLNKPTYESRCVIGKLFREVKDIAPRT 690
A FSIAVDFPKTGVPAEIP L VKEYPDFMEK +KP+Y+S VIGKLFREVK++AP
Sbjct: 874 AKLFSIAVDFPKTGVPAEIPQELRVKEYPDFMEKPDKPSYQSHNVIGKLFREVKNLAPNE 933
Query: 689 SCITAFTKEVAQRSYDRDMEVDGFEDYIDDAYYYKGEYDLKLGNMMDYYGIKTESEILGG 510
I T+E QR YD DMEV+GFEDYIDDA+++K +YD KLGN+MDYYG+KTE+EILGG
Sbjct: 934 CSIKFLTREKMQRFYDPDMEVEGFEDYIDDAFFHKSKYDYKLGNLMDYYGVKTEAEILGG 993
Query: 509 SIMKMSKTFDRRRDVEAIGAAVKALKKEARTWFDEKNNTESGSQEDDVYKKASAWYHVTY 330
IMKMS++F ++RD EAI AV++L+KEAR+WF+EK +E + DD Y KASAWY+VTY
Sbjct: 994 GIMKMSRSFTKKRDAEAISMAVRSLRKEARSWFNEK-GSELDEEIDDAYAKASAWYYVTY 1052
Query: 329 HPDYWGCYNEGMERDHYLSFPWCVYDKLIEIKQKKNSERNL--NHSLEIQFVRVLSL 165
HP YWG YNEGM RDH+LSFPWCVYDKLI+IK++K + R SLE +F R L L
Sbjct: 1053 HPSYWGQYNEGMNRDHFLSFPWCVYDKLIQIKKEKAAVREALDLSSLEHRFQRGLHL 1109
>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
Length = 1110
Score = 1441 bits (3730), Expect = 0.0
Identities = 723/1133 (63%), Positives = 881/1133 (77%), Gaps = 2/1133 (0%)
Frame = -3
Query: 3569 MGRTIQVSGFPSDVSKETVKDFLEKHIGKGSIIALKIRQTKKIRSNSSAYAIVQFESIKN 3390
MG+TIQV GF SDVS VK FLE + G+ ++ ALKIRQ KK + A+AIVQF +
Sbjct: 1 MGKTIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKIRQHKK---SGRAFAIVQFTRSSD 57
Query: 3389 AKDMSSLIYRRLYFGTSYLKVRQMKDDVVPKPRVLMLSVEATALHFGCQISDERFFALWK 3210
A + L +RLY+G SYLK R+M+ D+VPKPRV + ++E ++F C +S+E+F+ LWK
Sbjct: 58 AGLIIRLANQRLYYGRSYLKAREMETDIVPKPRVFLHTMERVTVNFDCHVSEEKFYVLWK 117
Query: 3209 AVDVIFNVGFGLRKLEFLLTHRHVEYKLELSYDSVWKIQLRHPQEQNTKFLLIQVSSAPR 3030
A +V N G G+RKLEFLL++ +YKLEL Y+++W+I+LR P Q +K LLIQ+ APR
Sbjct: 118 ADNVTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQTSKHLLIQLFGAPR 177
Query: 3029 IYEKCLSSSGDICKDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSALCLELPNNSELPGI 2850
IYEK + +S + DP NYF+D PDDQWVR TDFT S+CIGQSS LCLELP+N +LP
Sbjct: 178 IYEKEVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLCLELPHNLQLPNF 237
Query: 2849 CENFHNYKEDDGLFFLEIGSTFSHSTDLVPTVGPPQGLELPYNILFKINSLVQNGYLAGP 2670
ENF YKE++G LE GS++S + LVP V P + ++LP+ ILFK+N LVQNG + GP
Sbjct: 238 RENFAYYKENEGRLVLESGSSYSCNLSLVPIVCPSRVIDLPFEILFKVNLLVQNGCIPGP 297
Query: 2669 TLDATFFRLVHPSYIPNITHIERALEKLSHSKESCYEPVKWLSEQYKKYLTSKHNPKSPS 2490
LD TF+RLV P + + +I+ ALEKL + +E CYEP +WL E+YK + S+ SP+
Sbjct: 298 ALDDTFYRLVDPCRMHKV-YIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSPT 356
Query: 2489 ISLDDGLVYTRRVQVTPSKVYFCGPEINVSNRVLRKYHEAINNFIRVSFVDEDWEKMRST 2310
ISLD+GLVY RRVQ+TPS+VYFCGPEINVSNRVLR++H I+NF+R+SFVDE+ EK+ ST
Sbjct: 357 ISLDEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHST 416
Query: 2309 DLSPRASTSQGKRHTDIYKRILSTLKNGIVIGDKKFEFLAFSSSQLRDNSVWMFAPLNEI 2130
++ R R T IYKRILSTL+NGIVIG+K+FEFLAFSSSQLR+NS WMFA +
Sbjct: 417 NVQARG------RRTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKGL 470
Query: 2129 TAANIREWMGDFREIRNVAKYSARLGQSFSSSMKSLTVHKHEIETIPDVEIEKNGKKYVF 1950
TAA+IR WMG+F +IRNVAKY+ARLGQSFSSS ++L+V K EI IPD+EI K+G KYVF
Sbjct: 471 TAADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYVF 530
Query: 1949 SDGIGKISAKFAQRVATKCGIQSSTPSAFQIRYGGYKGVVAVDPTSVNKLSLRKSMSKYV 1770
DGIGKISA+FA++VA KC ++ TPSAFQIR GG+KGVVA+DPTS KLSLRKSM KY
Sbjct: 531 PDGIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSMEKYE 590
Query: 1769 SKNTSLDVLTWSKFQPCFLNRQLITLLSTLGVKDRIFEKKQKEAVDQLDVILTDPLRAQE 1590
S+NT LDVL WSK+QPCFLNRQLITLLSTLGV D FEKKQ+E VDQL+ +LTDPL AQE
Sbjct: 591 SENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDYAFEKKQREVVDQLNALLTDPLEAQE 650
Query: 1589 ALEIMSSGEGIDVLKEMLKCGYKPDVEPFLSMMLQTFRASKLLDLRNKTRIFLPKGRSMM 1410
ALE+MS GE ++LKEML CGYKPD EPFLSMML+TFRASKLL+LR K RIF+ KGRSMM
Sbjct: 651 ALELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGRSMM 710
Query: 1409 GCLDETGTLEYGQVFVQVSRVGNKQFGNNALSTSRGNESNQGSLIVEEKVFVAKNPCLHP 1230
GCLDET TL YGQVFVQ S G+ S + IV+ KV VAKNPCLHP
Sbjct: 711 GCLDETRTLNYGQVFVQFS----------------GSRSER-RFIVQGKVIVAKNPCLHP 753
Query: 1229 GDVRILQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPELIPPHQVT 1050
GDVR+L+AVNVP L HMVDCVVFPQKG RPHPNECSGSDLDGD+YFVCWDPELIP Q+
Sbjct: 754 GDVRVLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYKQID 813
Query: 1049 PMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKARSDACIEL 870
PMDY+PA + LDH+VTIEE++EYFTNYIVNDSLGII+NAHTAFAD+EP KA S C+EL
Sbjct: 814 PMDYSPASTTKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPGKAMSRPCLEL 873
Query: 869 AMKFSIAVDFPKTGVPAEIPSHLHVKEYPDFMEKLNKPTYESRCVIGKLFREVKDIAPRT 690
A FSIAVDFPKTGVPAEIP L VKE+PDFMEK +KP+Y+S VIGKLFREVK++AP
Sbjct: 874 AKLFSIAVDFPKTGVPAEIPQELRVKEFPDFMEKPDKPSYQSYNVIGKLFREVKNLAPNE 933
Query: 689 SCITAFTKEVAQRSYDRDMEVDGFEDYIDDAYYYKGEYDLKLGNMMDYYGIKTESEILGG 510
I T+E +R YD DMEV+GF DYIDDA++YK +YD KLGN+MDYYG+KTE+EIL G
Sbjct: 934 CSIKLLTREKMKRFYDPDMEVEGFVDYIDDAFFYKSKYDYKLGNLMDYYGVKTEAEILSG 993
Query: 509 SIMKMSKTFDRRRDVEAIGAAVKALKKEARTWFDEKNNTESGSQEDDVYKKASAWYHVTY 330
IMKMS++F ++RD E+I AV++L+KEAR+WF+EK +E + DD Y KASAWY+VTY
Sbjct: 994 GIMKMSRSFTKKRDAESISMAVRSLRKEARSWFNEK-GSELDEEIDDAYAKASAWYYVTY 1052
Query: 329 HPDYWGCYNEGMERDHYLSFPWCVYDKLIEIKQKKNSERNL--NHSLEIQFVR 177
H YWG YNEGM RDH+LSFPWCVYDKLI+IK++K + R SLE +F R
Sbjct: 1053 HHSYWGQYNEGMNRDHFLSFPWCVYDKLIQIKKEKAALREALDLSSLEHRFQR 1105
>ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Glycine
max] gi|571439308|ref|XP_006574822.1| PREDICTED:
RNA-dependent RNA polymerase 1-like isoform X2 [Glycine
max] gi|571439310|ref|XP_006574823.1| PREDICTED:
RNA-dependent RNA polymerase 1-like isoform X3 [Glycine
max]
Length = 1125
Score = 1440 bits (3727), Expect = 0.0
Identities = 730/1134 (64%), Positives = 885/1134 (78%), Gaps = 5/1134 (0%)
Frame = -3
Query: 3569 MGRTIQVSGFPSDVSKETVKDFLEKHIGKGSIIALKIRQTKKIRSNSSAYAIVQFESIKN 3390
MG+TI++ GFP+ V+ VK F+E++ G+G++ A+K+R K A+AI+QF + +
Sbjct: 1 MGKTIELYGFPTSVNVSDVKTFVEQYTGEGTVFAIKLRHGKG--RVPRAFAIIQFTTANS 58
Query: 3389 AKDMSSL---IYRRLYFGTSYLKVRQMKDDVVPKPRVLMLSVEATALHFGCQISDERFFA 3219
A M S I R L +GTSYLK R+M+ D+VP+PRV + S++ L FGCQIS RF
Sbjct: 59 ATSMMSRANNILRTLRYGTSYLKAREMERDIVPRPRVFLHSLDDVKLSFGCQISKGRFSV 118
Query: 3218 LWKAVDVIFNVGFGLRKLEFLLTHRHVEYKLELSYDSVWKIQLRHPQEQNTKFLLIQVSS 3039
LWK DVI N G G+RK+ FL +H +V+YKLELSY+++WKI+L P+ + T++LLIQ+
Sbjct: 119 LWKKQDVIVNFGSGMRKMHFLFSHNNVQYKLELSYENIWKIELHRPRNETTRYLLIQLLG 178
Query: 3038 APRIYEKCLSSSGDICKDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSALCLELPNNSEL 2859
APR++E + +S +I DP FN+F+D PD+QW+RA DFT S IGQSSA+CLELPN +L
Sbjct: 179 APRVFENDVPTSTNIFDDPLFNFFKDAPDEQWIRAIDFTPESRIGQSSAICLELPNGRQL 238
Query: 2858 PGICENFHNYKEDDGLFFLEIGSTFSHSTDLVPTVGPPQGLELPYNILFKINSLVQNGYL 2679
P ENF Y+E + + L+ G FS + LVP V PP G+++ Y+ILFK+NSLVQ+ L
Sbjct: 239 PNFRENFAYYEESERQYTLQTGVPFSQNWGLVPIVAPPLGVKISYDILFKVNSLVQHACL 298
Query: 2678 AGPTLDATFFRLVHPSYIPNITHIERALEKLSHSKESCYEPVKWLSEQYKKYLTSKHNPK 2499
AGP LD F+RLV P +P IE ALEK+ +SKE CYEP KWL++QYK YL SK++P+
Sbjct: 299 AGPALDGDFYRLVDPRRMPR-EFIEYALEKIYYSKEFCYEPTKWLTDQYKTYLESKNHPR 357
Query: 2498 SPSISLDDGLVYTRRVQVTPSKVYFCGPEINVSNRVLRKYHEAINNFIRVSFVDEDWEKM 2319
SP+ISLD GLVY RRVQ+TP KVYFCGPE+NVSNRVLR + E I+NF+RVSFVDE+ +K+
Sbjct: 358 SPAISLDTGLVYVRRVQITPCKVYFCGPEMNVSNRVLRHFREHIDNFLRVSFVDEELDKL 417
Query: 2318 RSTDLSPRASTSQGKRHTDIYKRILSTLKNGIVIGDKKFEFLAFSSSQLRDNSVWMFAPL 2139
STDLS R SQ K+ T+IY RILS LKNGIV+GDKKFEFLAFSSSQLR+NS+WMFAP
Sbjct: 418 FSTDLSSR---SQNKK-TEIYTRILSILKNGIVVGDKKFEFLAFSSSQLRENSLWMFAPT 473
Query: 2138 NE-ITAANIREWMGDFREIRNVAKYSARLGQSFSSSMKSLTVHKHEIETIPDVE-IEKNG 1965
TAA IR+WMG+F +IRNVAKY+ARLGQSF SS ++L+VH+ E+E IPDV+ + +G
Sbjct: 474 ETGCTAAYIRKWMGNFSQIRNVAKYAARLGQSFGSSTETLSVHRDEVEIIPDVKKLTYDG 533
Query: 1964 KKYVFSDGIGKISAKFAQRVATKCGIQSSTPSAFQIRYGGYKGVVAVDPTSVNKLSLRKS 1785
+YVFSDGIGKIS +FAQ+VA KCG TPSAFQIRYGGYKGVVAVDP S KLSLRKS
Sbjct: 534 NEYVFSDGIGKISLEFAQKVAKKCGYDC-TPSAFQIRYGGYKGVVAVDPKSCYKLSLRKS 592
Query: 1784 MSKYVSKNTSLDVLTWSKFQPCFLNRQLITLLSTLGVKDRIFEKKQKEAVDQLDVILTDP 1605
M KY S NT LDVL SKFQPC+LNRQLI+LLSTLG+KD +FEKKQ+E V+QL+ ILTD
Sbjct: 593 MRKYDSDNTKLDVLARSKFQPCYLNRQLISLLSTLGIKDDVFEKKQRETVNQLNTILTDS 652
Query: 1604 LRAQEALEIMSSGEGIDVLKEMLKCGYKPDVEPFLSMMLQTFRASKLLDLRNKTRIFLPK 1425
L+AQE L++MS+GE +VLKEML CGYKP+ EPFLSMMLQTFRASKLL+LR K+RIF+PK
Sbjct: 653 LKAQEVLDLMSAGEITNVLKEMLICGYKPNEEPFLSMMLQTFRASKLLELRLKSRIFIPK 712
Query: 1424 GRSMMGCLDETGTLEYGQVFVQVSRVGNKQFGNNALSTSRGNESNQGSLIVEEKVFVAKN 1245
GR+MMGCLDET TLEYGQVFVQ S N + N LS + + +V+ KV VAKN
Sbjct: 713 GRAMMGCLDETRTLEYGQVFVQFS---NNRLQN--LSDDFFSYDLPKNYMVKGKVVVAKN 767
Query: 1244 PCLHPGDVRILQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPELIP 1065
PCLHPGDVR+LQAV+VP L HMVDCVVFPQKG RPHPNECSGSDLDGDIYFVCWD ELIP
Sbjct: 768 PCLHPGDVRVLQAVDVPDLYHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDHELIP 827
Query: 1064 PHQVTPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKARSD 885
+ PMDYT +V LDHDV IEEV+EYF NYIVNDSLGIIANAHT FADKE LKA SD
Sbjct: 828 SRPIDPMDYTAPATVELDHDVMIEEVEEYFANYIVNDSLGIIANAHTVFADKEHLKAMSD 887
Query: 884 ACIELAMKFSIAVDFPKTGVPAEIPSHLHVKEYPDFMEKLNKPTYESRCVIGKLFREVKD 705
C++LA FS AVDFPKTGVPA IP LHVKEYPDFMEK +KPTY+S VIGKLFREVK+
Sbjct: 888 QCVKLARLFSTAVDFPKTGVPAVIPPELHVKEYPDFMEKPDKPTYKSHNVIGKLFREVKE 947
Query: 704 IAPRTSCITAFTKEVAQRSYDRDMEVDGFEDYIDDAYYYKGEYDLKLGNMMDYYGIKTES 525
I+ IT+FTK VA+ SYD +MEVDGF DY+DDA+Y+K YD KLGN+MDYYGIKTE+
Sbjct: 948 ISTSAGSITSFTKLVARDSYDHEMEVDGFMDYVDDAFYHKTNYDYKLGNLMDYYGIKTEA 1007
Query: 524 EILGGSIMKMSKTFDRRRDVEAIGAAVKALKKEARTWFDEKNNTESGSQEDDVYKKASAW 345
EILGG+IMKMSK+F++RRD EAI AV++L+KEAR WF+E ++ + S DVY KASAW
Sbjct: 1008 EILGGNIMKMSKSFNKRRDAEAINMAVRSLRKEARAWFNENSSGDVDSGSSDVYAKASAW 1067
Query: 344 YHVTYHPDYWGCYNEGMERDHYLSFPWCVYDKLIEIKQKKNSERNLNHSLEIQF 183
YHVTYHP YWGCYNEGM RDHYLSF WCVY L++IK++K S R SLE F
Sbjct: 1068 YHVTYHPSYWGCYNEGMNRDHYLSFSWCVYPLLVQIKKEKLSIR--RSSLEYSF 1119
>ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Fragaria vesca subsp.
vesca]
Length = 1119
Score = 1433 bits (3710), Expect = 0.0
Identities = 728/1126 (64%), Positives = 876/1126 (77%)
Frame = -3
Query: 3569 MGRTIQVSGFPSDVSKETVKDFLEKHIGKGSIIALKIRQTKKIRSNSSAYAIVQFESIKN 3390
MG+TIQ+ GFPS + E +K+FLEKH G+GS+ ALK+R K S YAI+QF+SI
Sbjct: 1 MGKTIQLHGFPSGQTAENIKEFLEKHTGEGSVFALKLRPAK---SGGRFYAIIQFQSISQ 57
Query: 3389 AKDMSSLIYRRLYFGTSYLKVRQMKDDVVPKPRVLMLSVEATALHFGCQISDERFFALWK 3210
A+ + SL RL++G SYL R D +VPKPR + S+ LH GCQ++ ++F LW
Sbjct: 58 AEKIISLANARLWYGRSYLNARPAHD-IVPKPRTFLHSLRDLVLHVGCQVAKDKFSVLWG 116
Query: 3209 AVDVIFNVGFGLRKLEFLLTHRHVEYKLELSYDSVWKIQLRHPQEQNTKFLLIQVSSAPR 3030
+V + GFG+R L+F L +R Y+L+LSY+++W+I+L H + ++ K+L+IQ+ PR
Sbjct: 117 TAEVSVDFGFGMRNLQFRLLYRQKVYRLQLSYENIWQIELHHQRGRSAKYLVIQLYGNPR 176
Query: 3029 IYEKCLSSSGDICKDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSALCLELPNNSELPGI 2850
IY++ + SSG + NYFRD PDD WVR TDFT SCIGQSS+LCL L ++ ELP
Sbjct: 177 IYQQEVCSSGGNGYED-MNYFRD-PDD-WVRTTDFTPGSCIGQSSSLCLVLTSDGELPDF 233
Query: 2849 CENFHNYKEDDGLFFLEIGSTFSHSTDLVPTVGPPQGLELPYNILFKINSLVQNGYLAGP 2670
ENF YK+ DG F LE GSTFS + DLVP VG P G++LPY+ILFKIN LVQ G L+GP
Sbjct: 234 EENFAYYKKTDGQFILENGSTFSRNRDLVPIVGSPAGIDLPYDILFKINLLVQQGCLSGP 293
Query: 2669 TLDATFFRLVHPSYIPNITHIERALEKLSHSKESCYEPVKWLSEQYKKYLTSKHNPKSPS 2490
TLD F+RLV P I IE AL+KLS+ KESCYEP WL+E+Y+KY+ SK PK
Sbjct: 294 TLDNNFYRLVDPRRISRPC-IEFALDKLSNLKESCYEPAVWLNEEYRKYMMSKKPPKPAL 352
Query: 2489 ISLDDGLVYTRRVQVTPSKVYFCGPEINVSNRVLRKYHEAINNFIRVSFVDEDWEKMRST 2310
ISLD GLVY RRVQ+TPSKVYF GPE+NVSNR+LR+Y I+NF+RVSFVDE+ EK+ ST
Sbjct: 353 ISLDSGLVYVRRVQITPSKVYFSGPEVNVSNRILRQYSSDIDNFLRVSFVDEEMEKLYST 412
Query: 2309 DLSPRASTSQGKRHTDIYKRILSTLKNGIVIGDKKFEFLAFSSSQLRDNSVWMFAPLNEI 2130
DLSPR ST R T IY R+LS L++GIV+G KKFEFLAFSSSQLR+NS+WMFAP +E
Sbjct: 413 DLSPRTST----RKTRIYNRVLSVLRDGIVVGKKKFEFLAFSSSQLRENSLWMFAPTDED 468
Query: 2129 TAANIREWMGDFREIRNVAKYSARLGQSFSSSMKSLTVHKHEIETIPDVEIEKNGKKYVF 1950
+A IR MGDFR+IRNVAKY+ARLGQSF SS ++L+V ++E+E IPDV + G KYVF
Sbjct: 469 SADTIRAGMGDFRQIRNVAKYAARLGQSFGSSTETLSVGRNEMEVIPDVTVNSCGIKYVF 528
Query: 1949 SDGIGKISAKFAQRVATKCGIQSSTPSAFQIRYGGYKGVVAVDPTSVNKLSLRKSMSKYV 1770
SDGIGKISA FA+RVA KCG ++ TPSAFQIRYGGYKGVVAVDPTS KLSLRKSMSKY
Sbjct: 529 SDGIGKISADFAERVAKKCGYKAFTPSAFQIRYGGYKGVVAVDPTSSMKLSLRKSMSKYE 588
Query: 1769 SKNTSLDVLTWSKFQPCFLNRQLITLLSTLGVKDRIFEKKQKEAVDQLDVILTDPLRAQE 1590
S+NT LDVL SK+QPCFLNRQLITLLSTL V+D +F KKQ+ AV QL+ ILTDPL+A+E
Sbjct: 589 SENTKLDVLACSKYQPCFLNRQLITLLSTLEVQDHVFLKKQRAAVQQLNAILTDPLKAEE 648
Query: 1589 ALEIMSSGEGIDVLKEMLKCGYKPDVEPFLSMMLQTFRASKLLDLRNKTRIFLPKGRSMM 1410
AL++MS+GE +VLKE+L CGYKP+VEPFLSMMLQTFRASKLL+LR KTRIF+P GR+MM
Sbjct: 649 ALDLMSAGESTNVLKELLMCGYKPNVEPFLSMMLQTFRASKLLELRTKTRIFIPDGRAMM 708
Query: 1409 GCLDETGTLEYGQVFVQVSRVGNKQFGNNALSTSRGNESNQGSLIVEEKVFVAKNPCLHP 1230
GCLDET TLEYGQVFVQ S +Q ++ S S I+E KV VAKNPCLHP
Sbjct: 709 GCLDETRTLEYGQVFVQFSGKRRRQLFDDICIHS----SLDSCFIIEGKVVVAKNPCLHP 764
Query: 1229 GDVRILQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPELIPPHQVT 1050
GDVR+L+AVNVP L HMVDCVVFPQKG RPHPNECSGSDLDGDIYFVCWDPELIPP Q+
Sbjct: 765 GDVRVLRAVNVPDLHHMVDCVVFPQKGHRPHPNECSGSDLDGDIYFVCWDPELIPPKQIQ 824
Query: 1049 PMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKARSDACIEL 870
PMDYTPA + +D DVTIEEV+EYF NYIVNDSLGIIANAHT FAD + KA S C++L
Sbjct: 825 PMDYTPAPPIEMDQDVTIEEVEEYFVNYIVNDSLGIIANAHTVFADSKLDKAMSHPCLQL 884
Query: 869 AMKFSIAVDFPKTGVPAEIPSHLHVKEYPDFMEKLNKPTYESRCVIGKLFREVKDIAPRT 690
A FSIAVDFPKTGVPAEIP L+ KEYPDFMEK +K TY S VIG+LFREVKDIAP
Sbjct: 885 AKLFSIAVDFPKTGVPAEIPPELYAKEYPDFMEKPDKRTYISHNVIGQLFREVKDIAPHD 944
Query: 689 SCITAFTKEVAQRSYDRDMEVDGFEDYIDDAYYYKGEYDLKLGNMMDYYGIKTESEILGG 510
S I +FT++VA + YD DMEVDGFEDY++DA+Y+KG YD KLGNM+DYYGIKTE+EIL G
Sbjct: 945 SSIASFTRQVATKCYDPDMEVDGFEDYLEDAFYHKGNYDYKLGNMLDYYGIKTEAEILSG 1004
Query: 509 SIMKMSKTFDRRRDVEAIGAAVKALKKEARTWFDEKNNTESGSQEDDVYKKASAWYHVTY 330
SIM +SK+F +RRD +AI AVK+L+KEAR WF+EK +T S +DDVY KASAWYHVTY
Sbjct: 1005 SIMTLSKSFTKRRDADAINVAVKSLRKEARAWFNEK-DTGIDSGDDDVYAKASAWYHVTY 1063
Query: 329 HPDYWGCYNEGMERDHYLSFPWCVYDKLIEIKQKKNSERNLNHSLE 192
HP+Y+G YNEGM R H++SFPWCV+DKL IK++K ++ L SLE
Sbjct: 1064 HPNYFGLYNEGMNRAHFISFPWCVFDKLGHIKKEKVNQARLISSLE 1109
>ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis sativus]
gi|316989899|gb|ADU77015.1| RNA-dependent RNA polymerase
1a [Cucumis sativus]
Length = 1130
Score = 1430 bits (3701), Expect = 0.0
Identities = 718/1138 (63%), Positives = 877/1138 (77%), Gaps = 3/1138 (0%)
Frame = -3
Query: 3569 MGRTIQVSGFPSDVSKETVKDFLEKHIGKGSIIALKIRQTKKIRSNSSAYAIVQFESIKN 3390
MG+TI +SGFPS V+ + VK+FLE H G G++ A+K+R K R YAIVQF S
Sbjct: 1 MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPK--RGGGRLYAIVQFTSATQ 58
Query: 3389 AKDMSSLIYRRLYFGTSYLKVRQMKDDVVPKPRVLMLSVEATALHFGCQISDERFFALWK 3210
A+ + SL +RL++G+SYLK R + D+VPKPR M ++E L FGCQ+S E+F LW+
Sbjct: 59 AELIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWE 118
Query: 3209 AVDVIFNVGFGLRKLEFLLTHRHVEYKLELSYDSVWKIQLRHPQEQNTKFLLIQVSSAPR 3030
+ G G+RK+ F L ++ VEY+LELSY+ +W+IQL P++Q+ K+LLIQ+S APR
Sbjct: 119 GNVDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPR 178
Query: 3029 IYEKCLSSSGDICKDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSALCLELPNNSELPGI 2850
IY+K +SG I +P N+F++ DDQWVR TDFT+S IGQSS+LCL+LPN +LP
Sbjct: 179 IYKKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPF 238
Query: 2849 CENFHNYKEDDGLF-FLEIGSTFSHSTDLVPTVGPPQGLELPYNILFKINSLVQNGYLAG 2673
+NF Y+E + F ++ + FS DL P V + LPY ILFKIN+LVQ G +
Sbjct: 239 KQNFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHV-LPYKILFKINALVQYGCIPW 297
Query: 2672 PTLDATFFRLVHPSYIPNITHIERALEKLSHSKESCYEPVKWLSEQYKKYLTSKHNPKSP 2493
P LDA+F+RLV I +E ALEKL H KE Y+P +L+EQY+KY S+H P SP
Sbjct: 298 PLLDASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKY--SRHPPNSP 355
Query: 2492 SISLDDGLVYTRRVQVTPSKVYFCGPEINVSNRVLRKYHEAINNFIRVSFVDEDWEKMRS 2313
ISLDDGLVY RRVQ+TP KV+FCGPE+NVSNRVLR + + I+NF+RVSFVDE+W+KMRS
Sbjct: 356 VISLDDGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRS 415
Query: 2312 TDLSPRASTSQGKRHTDIYKRILSTLKNGIVIGDKKFEFLAFSSSQLRDNSVWMFAPLNE 2133
TDL PR S+ TDIY+RILS LKNGIVIGDK F+FLAFSSSQLRDNS+WMFA +
Sbjct: 416 TDLLPRMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPD 475
Query: 2132 ITAANIREWMGDFREIRNVAKYSARLGQSFSSSMKSLTVHKHEIETIPDVEIEKNGKKYV 1953
I AA IR WMGDFR I+N AKY+ARLGQSF SS ++L+V +E E IPD+E+++ KYV
Sbjct: 476 IDAAYIRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYV 535
Query: 1952 FSDGIGKISAKFAQRVATKCGIQSSTPSAFQIRYGGYKGVVAVDPTSVNKLSLRKSMSKY 1773
FSDGIGKIS+KFA+ VA KCG Q+ PSAFQIRYGGYKGVVAVDP S KLSLRKSM K+
Sbjct: 536 FSDGIGKISSKFAKEVAAKCGFQA-VPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKF 594
Query: 1772 VSKNTSLDVLTWSKFQPCFLNRQLITLLSTLGVKDRIFEKKQKEAVDQLDVILTDPLRAQ 1593
S NT LDVL SK+QPCFLNRQLITL+STLGV+D IFEKKQ EAV+QLD ILTDPL+AQ
Sbjct: 595 ESDNTKLDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQ 654
Query: 1592 EALEIMSSGEGIDVLKEMLKCGYKPDVEPFLSMMLQTFRASKLLDLRNKTRIFLPKGRSM 1413
EALE+MS GE ++LKEMLKCGY+PDVEP+LSMMLQTFRASKLL+LR K+RIF+P GR+M
Sbjct: 655 EALELMSPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAM 714
Query: 1412 MGCLDETGTLEYGQVFVQVSRVGNKQFGNNALSTSRGNESNQGSLIVEEKVFVAKNPCLH 1233
MGCLDET TLEYGQVFVQ+S ++ + G E + L++E V VAKNPCLH
Sbjct: 715 MGCLDETRTLEYGQVFVQISSGRHRNLSESFAFNRIGREHH---LVIEGNVTVAKNPCLH 771
Query: 1232 PGDVRILQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPELIPPHQV 1053
PGDVR+L+AVN+P L HMVDCVVFPQKG RPHPNECSGSDLDGDIYFVCWD ELIP Q+
Sbjct: 772 PGDVRVLKAVNIPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPSRQI 831
Query: 1052 TPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKARSDACIE 873
PMDYTPA LD DVT E++QEYF NY+VNDSLGIIANAHTAFADKE KARS C+E
Sbjct: 832 PPMDYTPAPPNELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKELFKARSSPCLE 891
Query: 872 LAMKFSIAVDFPKTGVPAEIPSHLHVKEYPDFMEKLNKPTYESRCVIGKLFREVKDIAPR 693
LA FS+AVDFPKTGVPA IPSHL+VKE+PDFMEK ++P+YES VIGKLFR VKDIAP
Sbjct: 892 LAKLFSVAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESNKVIGKLFRAVKDIAPT 951
Query: 692 TSCITAFTKEVAQRSYDRDMEVDGFEDYIDDAYYYKGEYDLKLGNMMDYYGIKTESEILG 513
S I +FT++VA+R YD DMEV+GFEDY++DA+Y+K YD KLGN++DYYGIK+E+E+L
Sbjct: 952 LSHIRSFTRDVARRCYDCDMEVEGFEDYVEDAFYHKSNYDYKLGNLLDYYGIKSEAEVLS 1011
Query: 512 GSIMKMSKTFDRRRDVEAIGAAVKALKKEARTWFDEKNNTESGSQEDDVYKKASAWYHVT 333
GSIM+MSK+F RRRD EAI AV++L+KEARTWF+ + +S S DD++ KASAWY+VT
Sbjct: 1012 GSIMRMSKSFTRRRDAEAINLAVRSLRKEARTWFNAREGADSNS--DDLFAKASAWYYVT 1069
Query: 332 YHPDYWGCYNEGMERDHYLSFPWCVYDKLIEIKQK--KNSERNLNHSLEIQFVRVLSL 165
YH YWGCYNEGM+RDHYLSFPWCVYDKL++IK+ + ER + +F VL+L
Sbjct: 1070 YHHSYWGCYNEGMKRDHYLSFPWCVYDKLMQIKENNLRRRERAARLASFDRFGHVLNL 1127
>gb|EYU28878.1| hypothetical protein MIMGU_mgv1a000505mg [Mimulus guttatus]
Length = 1110
Score = 1429 bits (3698), Expect = 0.0
Identities = 717/1129 (63%), Positives = 863/1129 (76%)
Frame = -3
Query: 3569 MGRTIQVSGFPSDVSKETVKDFLEKHIGKGSIIALKIRQTKKIRSNSSAYAIVQFESIKN 3390
MGRTIQV GFP V+ E VK FLE + G+G++IAL+++ K R AYA VQF +I+
Sbjct: 1 MGRTIQVFGFPYLVAAELVKKFLENYTGEGTVIALEVKTAKVGRR---AYARVQFTNIRC 57
Query: 3389 AKDMSSLIYRRLYFGTSYLKVRQMKDDVVPKPRVLMLSVEATALHFGCQISDERFFALWK 3210
A+ + L RLY+GTSYLK + D+V PR +E L+FGCQIS +F LWK
Sbjct: 58 AETIIDLAKNRLYYGTSYLKAYESDIDIVQNPRTFAHEMENVTLNFGCQISPHKFSVLWK 117
Query: 3209 AVDVIFNVGFGLRKLEFLLTHRHVEYKLELSYDSVWKIQLRHPQEQNTKFLLIQVSSAPR 3030
V G G++K+ F L H VEYK++LSY+++W+I L + Q++K L+IQ+ APR
Sbjct: 118 GESVTVKFGTGMKKMHFFLRHNSVEYKMQLSYENIWQIVLYNSYGQSSKLLVIQLFGAPR 177
Query: 3029 IYEKCLSSSGDICKDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSALCLELPNNSELPGI 2850
IY+K S ++YF T DDQWVR TDFT S IGQSS+LCL+LP LP
Sbjct: 178 IYKKLSGS--------VYSYFMVTQDDQWVRTTDFT-QSLIGQSSSLCLQLPYGMRLPNF 228
Query: 2849 CENFHNYKEDDGLFFLEIGSTFSHSTDLVPTVGPPQGLELPYNILFKINSLVQNGYLAGP 2670
+NF YKE + F LE G FSH++DLVP V PP ++LPY +LFK+ SLVQ G L GP
Sbjct: 229 RDNFLYYKESETPFRLETGVPFSHNSDLVPIVRPPIDIKLPYTLLFKVCSLVQTGCLPGP 288
Query: 2669 TLDATFFRLVHPSYIPNITHIERALEKLSHSKESCYEPVKWLSEQYKKYLTSKHNPKSPS 2490
LD +FF LV+P+ +I +IE ALEKL + KE CY P WL EQY++Y TSK +PKSP+
Sbjct: 289 KLDRSFFDLVNPAK-HDIRYIEHALEKLYYLKECCYNPAAWLKEQYERYRTSKEHPKSPA 347
Query: 2489 ISLDDGLVYTRRVQVTPSKVYFCGPEINVSNRVLRKYHEAINNFIRVSFVDEDWEKMRST 2310
I LDDGLVY RVQVTP++VYF GPE+NVSNRVLR Y + I+NF+RVSFVDE+W+KM ST
Sbjct: 348 ICLDDGLVYVHRVQVTPTRVYFSGPEVNVSNRVLRHYRDYIDNFLRVSFVDEEWDKMYST 407
Query: 2309 DLSPRASTSQGKRHTDIYKRILSTLKNGIVIGDKKFEFLAFSSSQLRDNSVWMFAPLNEI 2130
DLSPR + + T +Y+R++S L++G+ IGD+KF+FLAFSSSQLRDNS+WMFAP + +
Sbjct: 408 DLSPRVAAGDENKRTKLYERVISILRDGVRIGDRKFDFLAFSSSQLRDNSLWMFAPTDGL 467
Query: 2129 TAANIREWMGDFREIRNVAKYSARLGQSFSSSMKSLTVHKHEIETIPDVEIEKNGKKYVF 1950
A IREWMGDF IRNVAKY+ARLGQSF SS ++L+V K EIE I DV KNG +Y F
Sbjct: 468 NADGIREWMGDFSSIRNVAKYAARLGQSFGSSTETLSVSKREIEEIQDV---KNGTEYTF 524
Query: 1949 SDGIGKISAKFAQRVATKCGIQSSTPSAFQIRYGGYKGVVAVDPTSVNKLSLRKSMSKYV 1770
SDGIGKIS FA++VA KCG++SSTPSAFQIRYGGYKGVVAVDP+S KLSLR SM KY
Sbjct: 525 SDGIGKISEDFARQVAAKCGVRSSTPSAFQIRYGGYKGVVAVDPSSKKKLSLRPSMLKYQ 584
Query: 1769 SKNTSLDVLTWSKFQPCFLNRQLITLLSTLGVKDRIFEKKQKEAVDQLDVILTDPLRAQE 1590
S NT LDVL WSK+QPCFLNRQ+ITLLSTLGVKD +FEK+Q+EAV QLD +L DP+RAQE
Sbjct: 585 SDNTKLDVLAWSKYQPCFLNRQIITLLSTLGVKDHVFEKRQREAVAQLDDVLIDPMRAQE 644
Query: 1589 ALEIMSSGEGIDVLKEMLKCGYKPDVEPFLSMMLQTFRASKLLDLRNKTRIFLPKGRSMM 1410
AL++MS GE +LKEMLKCGY+PD EPFLSMMLQTFRASKLLDLR K R+F+PK R MM
Sbjct: 645 ALDLMSPGENTHILKEMLKCGYEPDGEPFLSMMLQTFRASKLLDLRVKARVFIPKARQMM 704
Query: 1409 GCLDETGTLEYGQVFVQVSRVGNKQFGNNALSTSRGNESNQGSLIVEEKVFVAKNPCLHP 1230
GCLDETG L+YGQVFV+ S + +++ S NE V KV VAKNPCLHP
Sbjct: 705 GCLDETGILKYGQVFVRYSGAVKRGLFDDSYDNSTANERFDP---VRGKVVVAKNPCLHP 761
Query: 1229 GDVRILQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPELIPPHQVT 1050
GDVR+L AV+VP L+HMVDCVVFP+ GKRPHPNECSGSDLDGDIYFVCWD +LIP QV
Sbjct: 762 GDVRVLTAVDVPELRHMVDCVVFPKNGKRPHPNECSGSDLDGDIYFVCWDSDLIPTKQVE 821
Query: 1049 PMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKARSDACIEL 870
PMDY PA + LDHDVTIEEV++YFTNYIVNDSLGIIANAHT FADKEPL A S+ C+EL
Sbjct: 822 PMDYNPAPTTRLDHDVTIEEVEDYFTNYIVNDSLGIIANAHTVFADKEPLMALSEPCLEL 881
Query: 869 AMKFSIAVDFPKTGVPAEIPSHLHVKEYPDFMEKLNKPTYESRCVIGKLFREVKDIAPRT 690
A FSIAVDF KTG+PAEIP HL VKEYPDFMEK +K Y S VIGKLFREVKDIAP+T
Sbjct: 882 ARLFSIAVDFNKTGIPAEIPPHLRVKEYPDFMEKPDKINYASSRVIGKLFREVKDIAPQT 941
Query: 689 SCITAFTKEVAQRSYDRDMEVDGFEDYIDDAYYYKGEYDLKLGNMMDYYGIKTESEILGG 510
S +FTKEVA+RSYD DMEVDGFED+ID+A+ +K EYD KLGN+M+YYG+KTE+E+L G
Sbjct: 942 SSFRSFTKEVARRSYDPDMEVDGFEDHIDEAFLHKTEYDYKLGNLMEYYGVKTEAEVLSG 1001
Query: 509 SIMKMSKTFDRRRDVEAIGAAVKALKKEARTWFDEKNNTESGSQEDDVYKKASAWYHVTY 330
IMKMSKTFDRR+D EAIGAAV++L+ EAR+WF + G++ DDVY KASAWY+VTY
Sbjct: 1002 GIMKMSKTFDRRKDAEAIGAAVRSLRNEARSWF------KKGTEADDVYAKASAWYYVTY 1055
Query: 329 HPDYWGCYNEGMERDHYLSFPWCVYDKLIEIKQKKNSERNLNHSLEIQF 183
HPDY+GCYNEGM+RDHYLSFPWCVYDKL++IK+ + + SL QF
Sbjct: 1056 HPDYFGCYNEGMKRDHYLSFPWCVYDKLVKIKKDNSRRASQMASLRRQF 1104
>emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]
Length = 1116
Score = 1417 bits (3667), Expect = 0.0
Identities = 723/1137 (63%), Positives = 865/1137 (76%), Gaps = 4/1137 (0%)
Frame = -3
Query: 3569 MGRTIQVSGFPSDVSKETVKDFLEKHIGKGSIIALKIRQTKKIRSNSSAYAIVQFESIKN 3390
MG+TIQV GFP +S E VK FLE H G G++ AL+++Q+K R A+A VQF + K+
Sbjct: 1 MGKTIQVFGFPYLLSAEAVKKFLENHTGNGTVYALEVKQSKGGRR---AFAKVQFANNKS 57
Query: 3389 AKDMSSLIYRRLYFGTSYLKVRQMKDDVVPKPRVLMLSVEATALHFGCQISDERFFALWK 3210
A+ + L + LY+G SYLK +MK D+V +PR + ++ L+FGCQISD++F A+
Sbjct: 58 AEFIIDLASKGLYYGPSYLKAWEMKTDIV-QPRTYVEHMDGVTLNFGCQISDKKF-AVLG 115
Query: 3209 AVDVIFNVGFGLRKLEFLLTHRHVEYKLELSYDSVWKIQLRHPQEQNTKFLLIQVSSAPR 3030
+ DV G GL+K+ F L+H +YKL+LSY+++W++ L P QN +FLL+Q+ APR
Sbjct: 116 SKDVSIKFGIGLKKIYFFLSHASADYKLQLSYENIWQVVLHRPYGQNAQFLLLQLFGAPR 175
Query: 3029 IYEKCLSSSGDICKDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSALCLELPNNSELPGI 2850
IY++ +D +++F++TPDDQWVR TDFT S IG SS+LCLE N +LP
Sbjct: 176 IYKRL--------EDSCYSFFKETPDDQWVRTTDFTPS-WIGLSSSLCLEFRNGVQLPNF 226
Query: 2849 CENFHNYKEDDGLFFLEIGSTFSHSTDL--VPTVGPPQGLELPYNILFKINSLVQNGYLA 2676
E+F YKE F L+ G TFS S L VP V P+G+ELPY ILFKI+SL+Q+G
Sbjct: 227 SESFFYYKESMNQFILQTGFTFSFSQKLALVPIVHLPEGIELPYKILFKISSLIQHGCFP 286
Query: 2675 GPTLDATFFRLVHPSYIPNITHIERALEKLSHSKESCYEPVKWLSEQYKKYLTSKHNPKS 2496
G L+ FF+LV P NI IE ALEKL + KE CY+PV+WL+EQY +YL + PKS
Sbjct: 287 GLALNFNFFQLVDPRR-RNIACIEHALEKLYYLKECCYDPVRWLTEQYDEYLKGRQLPKS 345
Query: 2495 PSISLDDGLVYTRRVQVTPSKVYFCGPEINVSNRVLRKYHEAINNFIRVSFVDEDWEKMR 2316
P I+LDDGLVY RRV VTP KVYFCGPE+NVSNRVLR Y E INNF+RVSFVDE+WEK+
Sbjct: 346 PPITLDDGLVYVRRVVVTPCKVYFCGPEVNVSNRVLRNYSEDINNFLRVSFVDEEWEKIH 405
Query: 2315 STDLSPRASTSQGKRHTDIYKRILSTLKNGIVIGDKKFEFLAFSSSQLRDNSVWMFAPLN 2136
STDL PRAST G R TDIY+RILSTL+NG +IGDK+FEFLAFSSSQLRDNSVWMFA
Sbjct: 406 STDLLPRASTGNGTR-TDIYERILSTLRNGFIIGDKRFEFLAFSSSQLRDNSVWMFASRP 464
Query: 2135 EITAANIREWMGDFREIRNVAKYSARLGQSFSSSMKSLTVHKHEIETIPDVEIEKNGKKY 1956
+TA +IR WMGDFR+IRNVAKY+ARLGQSF SS ++L+V +HE+E IPDV +G Y
Sbjct: 465 GLTANDIRTWMGDFRQIRNVAKYAARLGQSFGSSRETLSVGRHEVEVIPDVACSLHGTNY 524
Query: 1955 VFSDGIGKISAKFAQRVATKCGIQSSTPSAFQIRYGGYKGVVAVDPTSVNKLSLRKSMSK 1776
+FSDGIGKISA FA RV KCG+Q TPS+FQIRYGGYKGVVAVDP S KLSLRKSM K
Sbjct: 525 IFSDGIGKISADFAHRVTIKCGLQY-TPSSFQIRYGGYKGVVAVDPYSSMKLSLRKSMLK 583
Query: 1775 YVSKNTSLDVLTWSKFQPCFLNRQLITLLSTLGVKDRIFEKKQKEAVDQLDVILTDPLRA 1596
Y S N LDVL WSK+QPC+LNRQL+TLLSTLGV D + E+KQ EAVDQLD IL D L+A
Sbjct: 584 YESNNIKLDVLGWSKYQPCYLNRQLVTLLSTLGVIDDVLEQKQNEAVDQLDAILHDSLKA 643
Query: 1595 QEALEIMSSGEGIDVLKEMLKCGYKPDVEPFLSMMLQTFRASKLLDLRNKTRIFLPKGRS 1416
QEALE+MS GE ++LKEML CGY PD EPFLSMMLQTFRASKLLDLR +TRIF+P GR+
Sbjct: 644 QEALELMSPGENTNILKEMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRTRIFIPNGRT 703
Query: 1415 MMGCLDETGTLEYGQVFVQVSRVGNKQFGNNALSTSRGNESNQGSLIVEEKVFVAKNPCL 1236
MMGCLDE+ TLEYGQVFVQ S G +QF + + +N I++ V VAKNPCL
Sbjct: 704 MMGCLDESRTLEYGQVFVQFSGAGRRQFFEESHPFNDSGSANC-DFILKGNVVVAKNPCL 762
Query: 1235 HPGDVRILQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPELIPPHQ 1056
HPGD+R+L+AV+VPAL HMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDP+LIPP Q
Sbjct: 763 HPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPDLIPPRQ 822
Query: 1055 VTPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKARSDACI 876
V MDYTPA + LDHDVTIEEV+EYFTNYI+NDSLGIIANAH FAD+EP A SD C
Sbjct: 823 VQSMDYTPAPTTQLDHDVTIEEVEEYFTNYIINDSLGIIANAHVVFADREPDMAMSDPCK 882
Query: 875 ELAMKFSIAVDFPKTGVPAEIPSHLHVKEYPDFMEKLNKPTYESRCVIGKLFREVKDIAP 696
+LA FSIAVDFPKTGVPAEIPS L KEYPDFMEK +KPTY S VIGKLF++VK+ P
Sbjct: 883 QLAQLFSIAVDFPKTGVPAEIPSQLRPKEYPDFMEKPDKPTYPSEKVIGKLFQKVKNKTP 942
Query: 695 RTSCITAFTKEVAQRSYDRDMEVDGFEDYIDDAYYYKGEYDLKLGNMMDYYGIKTESEIL 516
+ S I FT++VA++SYD DM VDGFEDYID+A+YYK EYD KLGN+MDYYGIKTE+EIL
Sbjct: 943 QASSIATFTRDVARKSYDSDMIVDGFEDYIDEAFYYKSEYDNKLGNLMDYYGIKTEAEIL 1002
Query: 515 GGSIMKMSKTFDRRRDVEAIGAAVKALKKEARTWFDEKNNTESGSQEDDVYKKASAWYHV 336
G IMK SKTFDRR+D EAIG AV+ L+KEAR WF + S DD+ KASAWYHV
Sbjct: 1003 SGGIMKASKTFDRRKDAEAIGVAVRCLRKEARAWFKRR------SDIDDMLAKASAWYHV 1056
Query: 335 TYHPDYWGCYNEGMERDHYLSFPWCVYDKLIEIKQKKNSERNLNH--SLEIQFVRVL 171
TYH YWG YNEG++RDH++SFPWCVYD+LI+IK+ K +R + H SL Q R L
Sbjct: 1057 TYHHTYWGLYNEGLKRDHFISFPWCVYDQLIQIKKAKARKRPVPHLSSLGSQLSRKL 1113
>ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [Amborella trichopoda]
gi|548853371|gb|ERN11375.1| hypothetical protein
AMTR_s00176p00039530 [Amborella trichopoda]
Length = 1210
Score = 1413 bits (3658), Expect = 0.0
Identities = 712/1144 (62%), Positives = 866/1144 (75%), Gaps = 9/1144 (0%)
Frame = -3
Query: 3566 GRTIQVSGFPSDVSKETVKDFLEKHIGKGSIIALKIRQTKKIRSNSSAYAIVQFESIKNA 3387
GRT+QVSGFP E VK FLE G G++ LKIR K + NS +AIVQF + K+A
Sbjct: 75 GRTVQVSGFPQGTCAEAVKKFLESITGFGTVYHLKIR-IHKSKPNSRVFAIVQFTTSKSA 133
Query: 3386 KDMSSLIY--RRLYFGTSYLKVRQMKDDVVPKPRVLMLSVEATALHFGCQISDERFFALW 3213
+ + SL + LYFG SY+ VR M++D+VP PRV +E+ L+FG QIS+E F LW
Sbjct: 134 EVIYSLAPQPKSLYFGNSYVIVRYMENDIVPNPRVTYHVLESIQLYFGNQISEESFAILW 193
Query: 3212 KAVDVIFNVGFGLRKLEFLLTHRHVEYKLELSYDSVWKIQLRHPQEQNTKFLLIQVSSAP 3033
+V GFGL+K+ F L H V+YKL+L Y+++W+IQLR P + T++L++Q+ AP
Sbjct: 194 SNTNVKVEFGFGLKKIFFYLAHTGVDYKLDLYYENIWQIQLRRPGTEGTRYLVLQMQGAP 253
Query: 3032 RIYEKCLSSSGDICKDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSALCLELPNNSELPG 2853
RI++K LS S DI P FNY++D PD+QWVR+ DFT S IGQSS+LCL LPN + +P
Sbjct: 254 RIFQKPLSFSSDIYDSPLFNYYKDFPDEQWVRSIDFTPSCSIGQSSSLCLALPNGTRIPN 313
Query: 2852 ICENFHNYKEDDGLFFLEIGSTFSHSTDLVPTVGPPQGLELPYNILFKINSLVQNGYLAG 2673
I ENF YKE G F L+ GS+FSHS LVP V PP ++LPY ILF++NSLVQNG+L G
Sbjct: 314 IRENFAYYKEIGGAFNLKTGSSFSHSLHLVPIVHPPDQIKLPYKILFRVNSLVQNGFLVG 373
Query: 2672 PTLDATFFRLVHPSYIPNITHIERALEKLSHSKESCYEPVKWLSEQYKKYLTSKHNPKSP 2493
PTLD F+ L++ P +ER+LE +S C EP KWL EQYKKY P
Sbjct: 374 PTLDTEFYNLLNGLPSP---FVERSLEDISRLTNCCLEPAKWLQEQYKKYRNLPRRPSPA 430
Query: 2492 SISLDDGLVYTRRVQVTPSKVYFCGPEINVSNRVLRKYHEAINNFIRVSFVDEDWEKMRS 2313
+ISL+ GLVY RVQVTPSKVYF GPE+NVSNRVLR++ I+NF+R+SF+DED+ +RS
Sbjct: 431 AISLEPGLVYVHRVQVTPSKVYFYGPEVNVSNRVLRQFSNYIDNFLRISFIDEDFGSIRS 490
Query: 2312 TDLSPRASTSQGKRHTDIYKRILSTLKNGIVIGDKKFEFLAFSSSQLRDNSVWMFAPLNE 2133
TDLS R ++ ++HT +Y R+LSTLKNGIVIGDKKFEFLAFSSSQLRDNS WMF+P++
Sbjct: 491 TDLSKRMASGAEEKHTTVYGRVLSTLKNGIVIGDKKFEFLAFSSSQLRDNSAWMFSPIDG 550
Query: 2132 ITAANIREWMGDFREIRNVAKYSARLGQSFSSSMKSLTVHKHEIETIPDVEIEKNGKKYV 1953
ITAANIR+WMGDF IRNVAK +AR+GQSF SS ++L V E+E I D+ KNGK YV
Sbjct: 551 ITAANIRQWMGDFSGIRNVAKCAARMGQSFGSSTETLNVKPEEVERISDI---KNGK-YV 606
Query: 1952 FSDGIGKISAKFAQRVATKCGIQSSTPSAFQIRYGGYKGVVAVDPTSVNKLSLRKSMSKY 1773
FSDGIGKIS +FA++VA KCG TPSAFQIRYGGYKGVVAVDPTS KLSLR SM KY
Sbjct: 607 FSDGIGKISLEFAKKVALKCGCSEKTPSAFQIRYGGYKGVVAVDPTSRYKLSLRGSMRKY 666
Query: 1772 VSKNTSLDVLTWSKFQPCFLNRQLITLLSTLGVKDRIFEKKQKEAVDQLDVILTDPLRAQ 1593
S NT LDVL +SKFQPCFLNRQ+ITLLSTLGV+D +FE KQK+AV QLD IL DP A
Sbjct: 667 SSNNTKLDVLAYSKFQPCFLNRQVITLLSTLGVQDNVFETKQKDAVSQLDKILVDPESAF 726
Query: 1592 EALEIMSSGEGIDVLKEMLKCGYKPDVEPFLSMMLQTFRASKLLDLRNKTRIFLPKGRSM 1413
EALE+MS GE ++VLKEML CGY PD EPFLSMMLQTFR KL +L+ KTRIF+P GRSM
Sbjct: 727 EALELMSPGENVNVLKEMLFCGYLPDSEPFLSMMLQTFRGLKLSELKTKTRIFIPNGRSM 786
Query: 1412 MGCLDETGTLEYGQVFVQVSRVGNKQFGNNALSTSRGNESNQGSLIVEEKVFVAKNPCLH 1233
MGCLDETG LEYGQVFVQ S +GN++ LS + S+Q +V KV VAKNPCLH
Sbjct: 787 MGCLDETGILEYGQVFVQFSAIGNRRLHEFGLSKINESGSDQRVRVVVGKVIVAKNPCLH 846
Query: 1232 PGDVRILQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPELIPPHQV 1053
PGDVRIL A++VPAL HMV+CVVFPQKGKRPHPNECSGSDLDGDIYFV WDP LIP HQ
Sbjct: 847 PGDVRILTAIDVPALHHMVNCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPMLIPCHQG 906
Query: 1052 TPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKARSDACIE 873
TPM+Y PA + LDH+VTIEE++EYFTNY++NDSLGIIANAHT FADKEP+KA S C++
Sbjct: 907 TPMEYEPAPNNDLDHEVTIEEIEEYFTNYMINDSLGIIANAHTVFADKEPMKADSTPCVD 966
Query: 872 LAMKFSIAVDFPKTGVPAEIPSHLHVKEYPDFMEKLNKPTYESRCVIGKLFREVKDIAPR 693
LA FS+AVDFPKTGVPA+IP HL+VKEYPDFM+K +KPTY+SR VIGKLFREVKD+ P
Sbjct: 967 LANLFSVAVDFPKTGVPADIPQHLYVKEYPDFMDKTDKPTYQSRRVIGKLFREVKDLPPH 1026
Query: 692 TSCITAFTKEVAQRSYDRDMEVDGFEDYIDDAYYYKGEYDLKLGNMMDYYGIKTESEILG 513
TS IT+FTK VA +SYD DMEVDGFE Y+DDA++YK EYD KL +MD+YGIKTE+EI+
Sbjct: 1027 TSAITSFTKSVALKSYDLDMEVDGFELYLDDAHWYKSEYDFKLAGLMDHYGIKTEAEIVS 1086
Query: 512 GSIMKMSKTFDRRRDVEAIGAAVKALKKEARTWFDEKNN-TESG--SQEDDVYKKASAWY 342
G+I+ ++K+F +RRD EAI A+++L+KE R WF EK + + G S +DDVY KASAWY
Sbjct: 1087 GNILSLAKSFTKRRDAEAIALAMRSLRKEVRGWFKEKRSVVDEGDYSLDDDVYAKASAWY 1146
Query: 341 HVTYHPDYWGCY--NEGMERDHYLSFPWCVYDKLIEIKQKK--NSERNLNHSLEIQFVRV 174
H+TYHP+YWG Y +G R H++SFPWC+YDKLI IK+ + + + SL R
Sbjct: 1147 HITYHPEYWGSYFEEDGRNRAHFISFPWCIYDKLIHIKRHRIGRGRNSRSSSLASTMERT 1206
Query: 173 LSLS 162
L LS
Sbjct: 1207 LMLS 1210
>gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
gi|209420668|gb|ACI46982.1| RNA-dependent RNA polymerase
[Nicotiana glutinosa]
Length = 1117
Score = 1405 bits (3637), Expect = 0.0
Identities = 721/1140 (63%), Positives = 863/1140 (75%), Gaps = 5/1140 (0%)
Frame = -3
Query: 3569 MGRTIQVSGFPSDVSKETVKDFLEKHIGKGSIIALKIRQTKKIRSNSSAYAIVQFESIKN 3390
MG+TIQV GFP +S E VK FLE H G G++ AL+++Q+K R A+A VQF + K+
Sbjct: 1 MGKTIQVFGFPYLLSAEAVKTFLENHTGNGTVYALEVKQSKGGRR---AFAKVQFANNKS 57
Query: 3389 AKDMSSLIYRRLYFGTSYLKVRQMKDDVVPKPRVLMLSVEATALHFGCQISDERFFALWK 3210
A+ + L + LY+G SYLK +MK +V +PR + ++ L+FGCQISD++F L
Sbjct: 58 AEIIIDLASKGLYYGPSYLKAWEMKTYIV-QPRTYVQHMDGVTLNFGCQISDKKFAVLGS 116
Query: 3209 AVDVIFNVGFGLRKLEFLLTHRHVEYKLELSYDSVWKIQLRHPQEQNTKFLLIQVSSAPR 3030
V V G GL+K+ F L++ +YKL+LSY+++W++ L P Q +FLL+Q+S APR
Sbjct: 117 KV-VSIKFGIGLKKIYFFLSYGSTDYKLQLSYENIWQVVLHRPYGQKAQFLLLQLSGAPR 175
Query: 3029 IYEKCLSSSGDICKDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSALCLELPNNSELPGI 2850
IY++ +D +++F++TPDDQWVR TDFT S IG SS+LCLE N LP
Sbjct: 176 IYKRL--------EDSCYSFFKETPDDQWVRTTDFTPS-WIGLSSSLCLEFHNGVRLPNF 226
Query: 2849 CENFHNYKEDDGLFFLEIGSTFSHSTD---LVPTVGPPQGLELPYNILFKINSLVQNGYL 2679
E+F YKE L+ G TFS S LVP V P+G+ELPY ILFKI+SL+Q+G
Sbjct: 227 SESFFYYKESANQVILQTGFTFSFSQKKLALVPIVHLPEGIELPYKILFKISSLIQHGCF 286
Query: 2678 AGPTLDATFFRLVHPSYIPNITHIERALEKLSHSKESCYEPVKWLSEQYKKYLTSKHNPK 2499
G L+ FF+LV P NI IE ALEKL + KE CY+PV+WL+EQY +YL + PK
Sbjct: 287 PGLALNFNFFQLVDPRR-RNIACIEHALEKLYYLKECCYDPVRWLTEQYDEYLKRRQLPK 345
Query: 2498 SPSISLDDGLVYTRRVQVTPSKVYFCGPEINVSNRVLRKYHEAINNFIRVSFVDEDWEKM 2319
SPSI+LDDGLVY RRV VTP KVYFCGPE+NVSNRVLR Y E I+NF+RVSFVDE+WEK+
Sbjct: 346 SPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKI 405
Query: 2318 RSTDLSPRASTSQGKRHTDIYKRILSTLKNGIVIGDKKFEFLAFSSSQLRDNSVWMFAPL 2139
STDL PRAST G R TDIY RILSTL+NG VIGDKKFEFLAFSSSQLRDNSVWMFA
Sbjct: 406 HSTDLLPRASTGNGVR-TDIYLRILSTLRNGFVIGDKKFEFLAFSSSQLRDNSVWMFASR 464
Query: 2138 NEITAANIREWMGDFREIRNVAKYSARLGQSFSSSMKSLTVHKHEIETIPDVEIEKNGKK 1959
+TA +IR WMG F++IRNVAKY+ARLGQSF SS ++L+V +HE+E IPDV +G
Sbjct: 465 PGLTANDIRTWMGGFQQIRNVAKYAARLGQSFGSSRETLSVGRHEVEVIPDVVCSLHGTN 524
Query: 1958 YVFSDGIGKISAKFAQRVATKCGIQSSTPSAFQIRYGGYKGVVAVDPTSVNKLSLRKSMS 1779
Y+FSDGIGKISA FA+RVA KCG+Q TPS FQIRYGGYKGVVAVDP S KLSLR SM
Sbjct: 525 YIFSDGIGKISADFARRVAVKCGLQY-TPSCFQIRYGGYKGVVAVDPYSSMKLSLRNSML 583
Query: 1778 KYVSKNTSLDVLTWSKFQPCFLNRQLITLLSTLGVKDRIFEKKQKEAVDQLDVILTDPLR 1599
KY S N LDVL WSK+QPC+LNRQL+TLLSTLGVKD +FE+KQ EAVDQLD IL D L+
Sbjct: 584 KYESNNIKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVFEQKQNEAVDQLDAILHDTLK 643
Query: 1598 AQEALEIMSSGEGIDVLKEMLKCGYKPDVEPFLSMMLQTFRASKLLDLRNKTRIFLPKGR 1419
AQEALE+MS GE ++LKEML CGY PD EPFLSMMLQTFRASKLLDLR ++RIF+P GR
Sbjct: 644 AQEALELMSPGENTNILKEMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGR 703
Query: 1418 SMMGCLDETGTLEYGQVFVQVSRVGNKQFGNNALSTSRGNESNQGSLIVEEKVFVAKNPC 1239
+MMGCLDE+ TLEYGQVFVQ + G +QF + + +N I+E V VAKNPC
Sbjct: 704 TMMGCLDESRTLEYGQVFVQFTGTGRRQFYEESHPFNDSGSTNC-DFILEGNVVVAKNPC 762
Query: 1238 LHPGDVRILQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPELIPPH 1059
LHPGD+R+L+AV+VPAL HMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDP+L+PP
Sbjct: 763 LHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPDLVPPR 822
Query: 1058 QVTPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKARSDAC 879
Q PMDYTPA S LDHDVTIEEV+EYFTNYIVNDSLGIIANAH FAD+EP A SD C
Sbjct: 823 QFQPMDYTPAPSTQLDHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPC 882
Query: 878 IELAMKFSIAVDFPKTGVPAEIPSHLHVKEYPDFMEKLNKPTYESRCVIGKLFREVKDIA 699
+LA FSIAVDFPKTGVPAEIPS L KEYPDFMEK +KPTY S VIGKLF++VKD
Sbjct: 883 KQLAQLFSIAVDFPKTGVPAEIPSQLRPKEYPDFMEKPDKPTYHSEKVIGKLFQKVKDKT 942
Query: 698 PRTSCITAFTKEVAQRSYDRDMEVDGFEDYIDDAYYYKGEYDLKLGNMMDYYGIKTESEI 519
P+ S I FT +VA++SYD DM V+GFEDYID+A+YYK EYD KLGN+MDYYGIKTE+EI
Sbjct: 943 PQASSIANFTMDVARKSYDGDMIVNGFEDYIDEAFYYKSEYDNKLGNLMDYYGIKTEAEI 1002
Query: 518 LGGSIMKMSKTFDRRRDVEAIGAAVKALKKEARTWFDEKNNTESGSQEDDVYKKASAWYH 339
L G IMK SKTFDRR+D +AIG AV++L+KEARTWF + S DD+ KASAWYH
Sbjct: 1003 LSGGIMKASKTFDRRKDADAIGVAVRSLRKEARTWFKRR------SDIDDMLAKASAWYH 1056
Query: 338 VTYHPDYWGCYNEGMERDHYLSFPWCVYDKLIEIKQKKNSERNLNH--SLEIQFVRVLSL 165
VTYH YWG YNEG++RDH++SFPWC+YD+LI+IK+ K ++ + H SL Q R L L
Sbjct: 1057 VTYHHTYWGFYNEGLKRDHFISFPWCIYDQLIQIKKAKARKKPVLHLSSLGNQLSRKLVL 1116
>ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycopersicum]
gi|4038592|emb|CAA71421.1| RNA-directed RNA polymerase
[Solanum lycopersicum]
Length = 1114
Score = 1397 bits (3617), Expect = 0.0
Identities = 712/1121 (63%), Positives = 859/1121 (76%), Gaps = 2/1121 (0%)
Frame = -3
Query: 3569 MGRTIQVSGFPSDVSKETVKDFLEKHIGKGSIIALKIRQTKKIRSNSSAYAIVQFESIKN 3390
MG+TIQV GFP +S E VK FLEK+ G G++ AL+++Q+K S A+A VQF +
Sbjct: 1 MGKTIQVFGFPYLLSAEVVKSFLEKYTGYGTVCALEVKQSK---GGSRAFAKVQFADNIS 57
Query: 3389 AKDMSSLIYRRLYFGTSYLKVRQMKDDVVPKPRVLMLSVEATALHFGCQISDERFFALWK 3210
A + +L RLYFG+SYLK +MK D+V + R + ++ L+FGCQISD++F A+
Sbjct: 58 ADKIITLANNRLYFGSSYLKAWEMKTDIV-QLRAYVDQMDGITLNFGCQISDDKF-AVLG 115
Query: 3209 AVDVIFNVGFGLRKLEFLLTHRHVEYKLELSYDSVWKIQLRHPQEQNTKFLLIQVSSAPR 3030
+ +V G GL+K F L+ +YKL+LSY+++W++ L P QN +FLLIQ+ APR
Sbjct: 116 STEVSIQFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPR 175
Query: 3029 IYEKCLSSSGDICKDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSALCLELPNNSELPGI 2850
IY++ +S +++F++TPDDQWVR TDF S IG SS+LCL+ LP
Sbjct: 176 IYKRLENS--------CYSFFKETPDDQWVRTTDFPPS-WIGLSSSLCLQFRRGVRLPNF 226
Query: 2849 CENFHNYKEDDGLFFLEIGSTF--SHSTDLVPTVGPPQGLELPYNILFKINSLVQNGYLA 2676
E+F +Y E + L+ G TF S + LVP V PP+G+ +PY ILFKI+SLVQ+G +
Sbjct: 227 EESFFHYAERENNITLQTGFTFFVSQKSALVPNVQPPEGISIPYKILFKISSLVQHGCIP 286
Query: 2675 GPTLDATFFRLVHPSYIPNITHIERALEKLSHSKESCYEPVKWLSEQYKKYLTSKHNPKS 2496
GP L+ FFRLV P N+ IE ALEKL + KE CY+PV+WL+EQY YL + PKS
Sbjct: 287 GPALNVYFFRLVDPRR-RNVACIEHALEKLYYIKECCYDPVRWLTEQYDGYLKGRQPPKS 345
Query: 2495 PSISLDDGLVYTRRVQVTPSKVYFCGPEINVSNRVLRKYHEAINNFIRVSFVDEDWEKMR 2316
PSI+LDDGLVY RRV VTP KVYFCGPE+NVSNRVLR Y E I+NF+RVSFVDE+WEK+
Sbjct: 346 PSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLY 405
Query: 2315 STDLSPRASTSQGKRHTDIYKRILSTLKNGIVIGDKKFEFLAFSSSQLRDNSVWMFAPLN 2136
STDL P+AST G R T+IY+RILSTL+ G VIGDKKFEFLAFSSSQLRDNSVWMFA
Sbjct: 406 STDLLPKASTGSGVR-TNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRP 464
Query: 2135 EITAANIREWMGDFREIRNVAKYSARLGQSFSSSMKSLTVHKHEIETIPDVEIEKNGKKY 1956
+TA +IR WMGDF +I+NVAKY+ARLGQSF SS ++L+V +HEIE IPDV++ +G Y
Sbjct: 465 GLTANDIRAWMGDFSQIKNVAKYAARLGQSFGSSRETLSVLRHEIEVIPDVKV--HGTSY 522
Query: 1955 VFSDGIGKISAKFAQRVATKCGIQSSTPSAFQIRYGGYKGVVAVDPTSVNKLSLRKSMSK 1776
VFSDGIGKIS FA RVA+KCG+Q TPSAFQIRYGGYKGVV VDP S KLSLRKSMSK
Sbjct: 523 VFSDGIGKISGDFAHRVASKCGLQY-TPSAFQIRYGGYKGVVGVDPDSSMKLSLRKSMSK 581
Query: 1775 YVSKNTSLDVLTWSKFQPCFLNRQLITLLSTLGVKDRIFEKKQKEAVDQLDVILTDPLRA 1596
Y S N LDVL WSK+QPC+LNRQLITLLSTLGVKD + E+KQKEAVDQLD IL D L+A
Sbjct: 582 YESDNIKLDVLGWSKYQPCYLNRQLITLLSTLGVKDEVLEQKQKEAVDQLDAILHDSLKA 641
Query: 1595 QEALEIMSSGEGIDVLKEMLKCGYKPDVEPFLSMMLQTFRASKLLDLRNKTRIFLPKGRS 1416
QEALE+MS GE ++LK ML CGYKPD EPFLSMMLQTFRASKLLDLR ++RIF+P GR+
Sbjct: 642 QEALELMSPGENTNILKAMLNCGYKPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRT 701
Query: 1415 MMGCLDETGTLEYGQVFVQVSRVGNKQFGNNALSTSRGNESNQGSLIVEEKVFVAKNPCL 1236
MMGCLDE+ TLEYGQVFVQ + G+ +F ++ L + S + I++ V VAKNPCL
Sbjct: 702 MMGCLDESRTLEYGQVFVQFTGAGHGEFSDD-LHPFNNSRSTNSNFILKGNVVVAKNPCL 760
Query: 1235 HPGDVRILQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPELIPPHQ 1056
HPGD+R+L+AVNV AL HMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWD ++IPP Q
Sbjct: 761 HPGDIRVLKAVNVRALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQ 820
Query: 1055 VTPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKARSDACI 876
V PM+Y PA S+ LDHDVTIEEV+EYFTNYIVNDSLGIIANAH FAD+EP A SD C
Sbjct: 821 VQPMEYPPAPSIQLDHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCK 880
Query: 875 ELAMKFSIAVDFPKTGVPAEIPSHLHVKEYPDFMEKLNKPTYESRCVIGKLFREVKDIAP 696
+LA FSIAVDFPKTGVPAEIPS L KEYPDFM+K +K +Y S VIGKLFR+VKD AP
Sbjct: 881 KLAELFSIAVDFPKTGVPAEIPSQLRPKEYPDFMDKPDKTSYISERVIGKLFRKVKDKAP 940
Query: 695 RTSCITAFTKEVAQRSYDRDMEVDGFEDYIDDAYYYKGEYDLKLGNMMDYYGIKTESEIL 516
+ S I FT++VA+RSYD DMEVDGFEDYID+A+ YK EYD KLGN+MDYYGIKTE+EIL
Sbjct: 941 QASSIATFTRDVARRSYDADMEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEIL 1000
Query: 515 GGSIMKMSKTFDRRRDVEAIGAAVKALKKEARTWFDEKNNTESGSQEDDVYKKASAWYHV 336
G IMK SKTFDRR+D EAI AV+AL+KEAR WF +N+ DD+ KASAWYHV
Sbjct: 1001 SGGIMKASKTFDRRKDAEAISVAVRALRKEARAWFKRRNDI------DDMLPKASAWYHV 1054
Query: 335 TYHPDYWGCYNEGMERDHYLSFPWCVYDKLIEIKQKKNSER 213
TYHP YWGCYN+G++R H++SFPWCVYD+LI+IK+ K R
Sbjct: 1055 TYHPTYWGCYNQGLKRAHFISFPWCVYDQLIQIKKDKARNR 1095
>ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Solanum tuberosum]
Length = 1115
Score = 1397 bits (3616), Expect = 0.0
Identities = 713/1122 (63%), Positives = 864/1122 (77%), Gaps = 3/1122 (0%)
Frame = -3
Query: 3569 MGRTIQVSGFPSDVSKETVKDFLEKHIGKGSIIALKIRQTKKIRSNSSAYAIVQFESIKN 3390
MG+TIQV GFP +S E VK FLEKH G G++ AL+++Q+K S A+A VQF +
Sbjct: 1 MGKTIQVYGFPDLLSAEVVKSFLEKHTGYGTVCALEVKQSK---GGSRAFAKVQFVDNIS 57
Query: 3389 AKDMSSLIYRRLYFGTSYLKVRQMKDDVVPKPRVLMLSVEATALHFGCQISDERFFALWK 3210
A + +L +RLYFG+SYLK +MK D+V + R + ++ L+FGCQISD++F A+
Sbjct: 58 ADKIINLASKRLYFGSSYLKAWEMKTDIV-QLRAYVDHMDGITLNFGCQISDDKF-AVLG 115
Query: 3209 AVDVIFNVGFGLRKLEFLLTHRHVEYKLELSYDSVWKIQLRHPQEQNTKFLLIQVSSAPR 3030
+ +V G GL+K F L+ +YKL+LSY+++W++ L P QN +FLLIQ+ APR
Sbjct: 116 STEVSIKFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPR 175
Query: 3029 IYEKCLSSSGDICKDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSALCLELPNNSELPGI 2850
IY++ +S +++F++TPDDQWVR TDF S IG SS+LCL+ LP
Sbjct: 176 IYKRLENS--------CYSFFKETPDDQWVRTTDFAPS-WIGLSSSLCLQFRRGVHLPNF 226
Query: 2849 CENFHNYKEDDGLFFLEIGSTF--SHSTDLVPTVGPPQGLELPYNILFKINSLVQNGYLA 2676
E+F +Y E + L+ G TF S + LVP V PP+G+ +PY ILFKI+SLVQ+G +
Sbjct: 227 QESFFHYAERENNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIP 286
Query: 2675 GPTLDATFFRLVHPSYIPNITHIERALEKLSHSKESCYEPVKWLSEQYKKYLTSKHNPKS 2496
GP L+ FFRLV P N+ IE+ALEKL + KE CY+PV+WL+EQY YL + PKS
Sbjct: 287 GPALNVNFFRLVDPQR-RNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKS 345
Query: 2495 PSISLDDGLVYTRRVQVTPSKVYFCGPEINVSNRVLRKYHEAINNFIRVSFVDEDWEKMR 2316
PSI+LDDGLVY RRV VTP KVYFCGPE+NVSNRVLR Y E I+NF+RVSFVDE+WEK+
Sbjct: 346 PSINLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLY 405
Query: 2315 STDLSPRASTSQGKRHTDIYKRILSTLKNGIVIGDKKFEFLAFSSSQLRDNSVWMFAPLN 2136
STDL P+AST G R T+IY RILSTL+ G VIGDKKFEFLAFSSSQLRDNSVWMFA
Sbjct: 406 STDLLPKASTGNGIR-TNIYVRILSTLQKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRP 464
Query: 2135 EITAANIREWMGDFREIRNVAKYSARLGQSFSSSMKSLTVHKHEIETIPDVEIEKNGKKY 1956
+TA +IR WMGDF +I+NVAKY+ARLGQSF SS ++L+V +HEIE IPDV++ +G Y
Sbjct: 465 GLTAIDIRTWMGDFSQIKNVAKYAARLGQSFGSSKETLSVLRHEIEIIPDVKV--HGTSY 522
Query: 1955 VFSDGIGKISAKFAQRVATKCGIQSSTPSAFQIRYGGYKGVVAVDPTSVNKLSLRKSMSK 1776
VFSDGIGKISA FA+RVA+KCG+Q TPSAFQIRYGGYKGVVAVDP S KLSLRKSMSK
Sbjct: 523 VFSDGIGKISADFARRVASKCGLQY-TPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSK 581
Query: 1775 YVSKNTSLDVLTWSKFQPCFLNRQLITLLSTLGVKDRIFEKKQKEAVDQLDVILTDPLRA 1596
Y S N LDVL WSK+QPCFLNRQL+TLLSTLGVKD + E+KQKEAVDQLD IL D L+A
Sbjct: 582 YESDNNKLDVLEWSKYQPCFLNRQLVTLLSTLGVKDDVLEQKQKEAVDQLDAILHDSLKA 641
Query: 1595 QEALEIMSSGEGIDVLKEMLKCGYKPDVEPFLSMMLQTFRASKLLDLRNKTRIFLPKGRS 1416
QEALE+MS GE ++LK ML CGY PD EPFLSMMLQTFRASKLLDLR ++RIF+P GR+
Sbjct: 642 QEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRA 701
Query: 1415 MMGCLDETGTLEYGQVFVQVSRVGNKQFGNNALSTSRGNESNQGSLIVEEKVFVAKNPCL 1236
MMGCLDE+ TLEYGQVFVQ + G+++F + L + S + I++ V VAKNPCL
Sbjct: 702 MMGCLDESRTLEYGQVFVQFTGSGHREFSED-LHPFNNSRSTNCNFILKGNVVVAKNPCL 760
Query: 1235 HPGDVRILQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPELIPPHQ 1056
HPGD+R+L+AV+VPAL HMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWD ++IPP Q
Sbjct: 761 HPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQ 820
Query: 1055 VTPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKARSDACI 876
V M+Y PA S+ LDHDVTIEEV+EYFTNYIVNDSLGIIANAH FAD+EP A SD C
Sbjct: 821 VQAMEYPPAPSIQLDHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCK 880
Query: 875 ELAMKFSIAVDFPKTGVPAEIPSHLHVKEYPDFMEK-LNKPTYESRCVIGKLFREVKDIA 699
+LA FSIAVDFPKTGVPAEIPS L KEYPDFM+K +K TY S VIGKL+R+VKD A
Sbjct: 881 KLAELFSIAVDFPKTGVPAEIPSQLRPKEYPDFMDKPPDKTTYISERVIGKLYRKVKDKA 940
Query: 698 PRTSCITAFTKEVAQRSYDRDMEVDGFEDYIDDAYYYKGEYDLKLGNMMDYYGIKTESEI 519
P+ S FT++VA+RSYD D+EVDGFEDYID+A+ YK EYD KLGN+MDYYGIKTE+EI
Sbjct: 941 PQASSTAIFTRDVARRSYDADLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEI 1000
Query: 518 LGGSIMKMSKTFDRRRDVEAIGAAVKALKKEARTWFDEKNNTESGSQEDDVYKKASAWYH 339
L G IMK SKTFDRR+D EAI AV+AL+KEARTWF +N+ DD+ KASAWYH
Sbjct: 1001 LSGGIMKTSKTFDRRKDAEAISIAVRALRKEARTWFKRRNDI------DDMLPKASAWYH 1054
Query: 338 VTYHPDYWGCYNEGMERDHYLSFPWCVYDKLIEIKQKKNSER 213
VTYHP YWGCYN+G++RDH++SFPWCVYD+LI+IK++K R
Sbjct: 1055 VTYHPTYWGCYNQGLKRDHFISFPWCVYDQLIQIKKEKALNR 1096
>ref|XP_004498236.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Cicer
arietinum]
Length = 1126
Score = 1397 bits (3615), Expect = 0.0
Identities = 710/1140 (62%), Positives = 879/1140 (77%), Gaps = 7/1140 (0%)
Frame = -3
Query: 3563 RTIQVSGFPSDVSKETVKDFLEKHIGKGSIIALKIRQTKKIRSNSSAYAIVQFESIKNAK 3384
+TI++ GFP+ V VK F+E+ G+GS++A+KIR+ K AYAI+QF + A
Sbjct: 5 KTIELYGFPTSVVVPDVKRFVERFTGEGSVVAIKIREGKA--RVQRAYAIIQFNTANQAT 62
Query: 3383 DMSSLIYRR---LYFGTSYLKVRQMKDDVVPKPRVLMLSVEATALHFGCQISDERFFALW 3213
M SL R L +G SYLK+R+M D+VP PR + S++ L+FGCQIS ERF LW
Sbjct: 63 HMLSLHNRSSTMLRYGNSYLKIREMVRDIVPNPRTYLESLDDVTLYFGCQISKERFSILW 122
Query: 3212 KAVDVIFNVGFGLRKLEFLLTHRHVEYKLELSYDSVWKIQLRHPQEQNTKFLLIQVSSAP 3033
+ DV ++ G+RK F + H + ++K +LSY+++WKI+ P + K+LLIQ+ AP
Sbjct: 123 RKRDVSVDLSAGMRKWRFCMCHDNKKFKFDLSYENIWKIEQYQPWGKTAKYLLIQLIGAP 182
Query: 3032 RIYEKCL--SSSGDICKDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSALCLELPNNSEL 2859
RI+E + S+S ++ +DP NYF+++PDDQW+RA DFT +CIGQSSA+CLELP + +
Sbjct: 183 RIFELYVPTSTSTNVYEDPLKNYFKESPDDQWIRAVDFTPFNCIGQSSAICLELPCDRDF 242
Query: 2858 PGICENFHNYKEDDGLFFLEIGSTFSHSTDLVPTVGPPQGLELPYNILFKINSLVQNGYL 2679
P I E F +Y+E++G + LE GS FSH+ D+VP V PPQG+ +P++ILFK+NSLVQ+G L
Sbjct: 243 PNIREYFVHYQENEGQYTLESGSPFSHNLDVVPIVAPPQGIYIPFDILFKVNSLVQHGCL 302
Query: 2678 AGPTLDATFFRLVHPSYIPNITHIERALEKLSHSKESCYEPVKWLSEQYKKYLTSKHNPK 2499
+G LD F+ LV P I N+ IE ALEK+ +SK+ CYEP +WL +QY+ YL S + +
Sbjct: 303 SGSELDNAFYCLVDPLRI-NVDFIEHALEKMYYSKDFCYEPARWLKDQYRMYLNSNYPLQ 361
Query: 2498 SPSISLDDGLVYTRRVQVTPSKVYFCGPEINVSNRVLRKYHEAINNFIRVSFVDEDWEKM 2319
SPSISLD+GLVY RRVQ+TP KVYFCGPEINVSNRV+R +HE I+NF+RVSFVDE+ +K+
Sbjct: 362 SPSISLDNGLVYVRRVQITPCKVYFCGPEINVSNRVVRHFHEHIDNFLRVSFVDEELDKL 421
Query: 2318 RSTDLSPRASTSQGKRHTDIYKRILSTLKNGIVIGDKKFEFLAFSSSQLRDNSVWMFAPL 2139
STDLS R S T++Y RILS L+NGIVIGDKKFEFLAFSSSQLR+NS+WMFAP
Sbjct: 422 YSTDLSSRISVGV---RTEVYNRILSILRNGIVIGDKKFEFLAFSSSQLRENSLWMFAPT 478
Query: 2138 -NEITAANIREWMGDFREIRNVAKYSARLGQSFSSSMKSLTVHKHEIETIPDVEIEKNGK 1962
+TA IR WMGDF +IRNVAKY+ARLGQSF SS ++L+V+++EIE IPD +++ +
Sbjct: 479 ATGLTAQFIRAWMGDFSQIRNVAKYAARLGQSFGSSTETLSVNRNEIEIIPDAQVKHDTI 538
Query: 1961 KYVFSDGIGKISAKFAQRVATKCGIQSSTPSAFQIRYGGYKGVVAVDPTSVNKLSLRKSM 1782
+YVFSDGIGKIS +FA+RVA KCG S TPSAFQIRYGGYKGVVAVDPTS KLSLRKSM
Sbjct: 539 EYVFSDGIGKISLEFARRVAKKCGYDS-TPSAFQIRYGGYKGVVAVDPTSSVKLSLRKSM 597
Query: 1781 SKYVSKNTSLDVLTWSKFQPCFLNRQLITLLSTLGVKDRIFEKKQKEAVDQLDVILTDPL 1602
KY S NT LDVL SK+QPC+LNRQLITLLSTL V+D +FEKKQKEAV+QL+ ILT+ L
Sbjct: 598 YKYDSDNTKLDVLACSKYQPCYLNRQLITLLSTLKVEDSVFEKKQKEAVNQLNTILTNSL 657
Query: 1601 RAQEALEIMSSGEGIDVLKEMLKCGYKPDVEPFLSMMLQTFRASKLLDLRNKTRIFLPKG 1422
+AQE L++MS+GE ++LKEML CGYKP+VEPFLSMMLQTFRASKLL+LR KTRIF+PKG
Sbjct: 658 KAQEVLDLMSTGEITNILKEMLFCGYKPNVEPFLSMMLQTFRASKLLELRQKTRIFIPKG 717
Query: 1421 RSMMGCLDETGTLEYGQVFVQVSRVGNKQFGNNALSTSRGNESNQGSLIVEEKVFVAKNP 1242
R+MMG LDET TLEYG+VFVQ S NN +S+ +N SL+V KV VAKNP
Sbjct: 718 RAMMGVLDETRTLEYGEVFVQYS--------NNRISSLSYGSAN--SLVVTGKVVVAKNP 767
Query: 1241 CLHPGDVRILQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPELIPP 1062
CLHPGDVR+L+AV+VPAL HMVDCVVFPQKG RPHPNECSGSDLDGDIYFVCWDPELIPP
Sbjct: 768 CLHPGDVRVLKAVDVPALHHMVDCVVFPQKGHRPHPNECSGSDLDGDIYFVCWDPELIPP 827
Query: 1061 HQVTPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKARSDA 882
PM+Y Q ++L HDV IEEV+EYFTNYI+NDSLGIIANAH FADKEP KA+++
Sbjct: 828 ETTEPMEYASVQPIVLYHDVEIEEVEEYFTNYILNDSLGIIANAHIVFADKEPAKAKAEP 887
Query: 881 CIELAMKFSIAVDFPKTGVPAEIPSHLHVKEYPDFMEKLNKPTYESRCVIGKLFREVKDI 702
CIELA FSIAVDFPKTG+PA IP HL KEYPDFMEK +K TY+S VIGKLFRE++ I
Sbjct: 888 CIELAKLFSIAVDFPKTGIPAVIPPHLFAKEYPDFMEKPDKTTYKSNNVIGKLFREIQGI 947
Query: 701 APRTSCITAFTKEVAQRSYDRDMEVDGFEDYIDDAYYYKGEYDLKLGNMMDYYGIKTESE 522
R IT+FT EVA++SYD DME DGF DY+DDA+Y+K YD KLGN+MDYYGIK ESE
Sbjct: 948 PSRDGSITSFTLEVAKKSYDPDMEFDGFMDYVDDAFYHKTNYDYKLGNLMDYYGIKNESE 1007
Query: 521 ILGGSIMKMSKTFDRRRDVEAIGAAVKALKKEARTWF-DEKNNTESGSQEDDVYKKASAW 345
IL G+IM+MSK+F++RRD +AI AV++L+KEAR+WF D+ +SGS D Y KASAW
Sbjct: 1008 ILSGNIMRMSKSFNKRRDGDAINMAVRSLRKEARSWFNDDATGVDSGSV--DAYAKASAW 1065
Query: 344 YHVTYHPDYWGCYNEGMERDHYLSFPWCVYDKLIEIKQKKNSERNLNHSLEIQFVRVLSL 165
Y+VTYH YWG YNEGM+RDH+LSFPWCVY L++IK++K R SLE F R L L
Sbjct: 1066 YYVTYHHSYWGSYNEGMKRDHFLSFPWCVYHLLVQIKKEKARMRMHAVSLEQSFSRRLRL 1125
>gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
Length = 1115
Score = 1394 bits (3608), Expect = 0.0
Identities = 711/1122 (63%), Positives = 866/1122 (77%), Gaps = 3/1122 (0%)
Frame = -3
Query: 3569 MGRTIQVSGFPSDVSKETVKDFLEKHIGKGSIIALKIRQTKKIRSNSSAYAIVQFESIKN 3390
MG+TIQV GFP+ +S E VK FLEKH G G+I AL+++Q+K S A+A VQF +
Sbjct: 1 MGKTIQVFGFPNLLSAEVVKLFLEKHTGYGTICALEVKQSK---GGSRAFAKVQFVDNIS 57
Query: 3389 AKDMSSLIYRRLYFGTSYLKVRQMKDDVVPKPRVLMLSVEATALHFGCQISDERFFALWK 3210
A + +L +RLYFG+SYLK +MK D+V + R + ++ L+FGCQIS+++F A+
Sbjct: 58 ADKIINLASKRLYFGSSYLKAWEMKTDIV-QLRAYVDHMDGITLNFGCQISEDKF-AVLG 115
Query: 3209 AVDVIFNVGFGLRKLEFLLTHRHVEYKLELSYDSVWKIQLRHPQEQNTKFLLIQVSSAPR 3030
+ +V G GL+K F L+ +YKL+LSY+++W++ L P QN +FLLIQ+ APR
Sbjct: 116 STEVSIKFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPR 175
Query: 3029 IYEKCLSSSGDICKDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSALCLELPNNSELPGI 2850
IY++ +S +++F++TPDDQWVR TDFT S IG SS+LCL+ LP
Sbjct: 176 IYKRLENS--------CYSFFKETPDDQWVRTTDFTPS-WIGLSSSLCLQFRRGVHLPNF 226
Query: 2849 CENFHNYKEDDGLFFLEIGSTF--SHSTDLVPTVGPPQGLELPYNILFKINSLVQNGYLA 2676
E+F +Y E + L+ G TF S + LVP V PP+G+ +PY ILFKI+SLVQ+G +
Sbjct: 227 QESFFHYAERENNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIP 286
Query: 2675 GPTLDATFFRLVHPSYIPNITHIERALEKLSHSKESCYEPVKWLSEQYKKYLTSKHNPKS 2496
GP L+ FFRLV P N+ IE+ALEKL + KE CY+PV+WL+EQY YL + PKS
Sbjct: 287 GPALNVYFFRLVDPQR-RNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKS 345
Query: 2495 PSISLDDGLVYTRRVQVTPSKVYFCGPEINVSNRVLRKYHEAINNFIRVSFVDEDWEKMR 2316
PSI+LDDGLVY RRV VTP KVYFCGPE+NVSNRVLR Y E I+NF+RVSFVDE+WEK+
Sbjct: 346 PSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLY 405
Query: 2315 STDLSPRASTSQGKRHTDIYKRILSTLKNGIVIGDKKFEFLAFSSSQLRDNSVWMFAPLN 2136
ST+L P+AST G R T+IY+RILSTL+ G VIGDKKFEFLAFSSSQLRDNSVWMFA
Sbjct: 406 STELLPKASTGNGIR-TNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRR 464
Query: 2135 EITAANIREWMGDFREIRNVAKYSARLGQSFSSSMKSLTVHKHEIETIPDVEIEKNGKKY 1956
+T +IR WMGDF +I+NVAKY+ARLGQSF SS ++L+V +HEIE IPDV++ +G Y
Sbjct: 465 GLTTNDIRSWMGDFSQIKNVAKYAARLGQSFGSSRETLSVLRHEIEVIPDVKV--HGTSY 522
Query: 1955 VFSDGIGKISAKFAQRVATKCGIQSSTPSAFQIRYGGYKGVVAVDPTSVNKLSLRKSMSK 1776
VFSDGIGKISA FA+RVA+KCG+Q TPSAFQIRYGGYKGVVAVDP S KLSLRKSMSK
Sbjct: 523 VFSDGIGKISADFARRVASKCGLQY-TPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSK 581
Query: 1775 YVSKNTSLDVLTWSKFQPCFLNRQLITLLSTLGVKDRIFEKKQKEAVDQLDVILTDPLRA 1596
Y S N LDVL WSK+QPC+LNRQL+TLLSTLGVKD + E+KQKEAV QLD IL D L+A
Sbjct: 582 YESDNNKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVLEQKQKEAVHQLDAILHDSLKA 641
Query: 1595 QEALEIMSSGEGIDVLKEMLKCGYKPDVEPFLSMMLQTFRASKLLDLRNKTRIFLPKGRS 1416
QEALE+MS GE ++LK ML CGY PD EPFLSMMLQTFRASKLLDLR ++RIF+P GR+
Sbjct: 642 QEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRA 701
Query: 1415 MMGCLDETGTLEYGQVFVQVSRVGNKQFGNNALSTSRGNESNQGSLIVEEKVFVAKNPCL 1236
MMGCLDE+ TLEYGQVFVQ + G+++F + L + S + I++ V VAKNPCL
Sbjct: 702 MMGCLDESRTLEYGQVFVQFTGAGHREFSED-LHPFNNSRSTNCNFILKGNVVVAKNPCL 760
Query: 1235 HPGDVRILQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPELIPPHQ 1056
HPGD+R+L+AV+VPAL HMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWD ++IPP Q
Sbjct: 761 HPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQ 820
Query: 1055 VTPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKARSDACI 876
V M+Y PA S+ LDH+VTIEEV+EYFTNYIVNDSLGIIANAH FAD+EP A SD C
Sbjct: 821 VQAMEYPPAPSIQLDHNVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCK 880
Query: 875 ELAMKFSIAVDFPKTGVPAEIPSHLHVKEYPDFMEK-LNKPTYESRCVIGKLFREVKDIA 699
+LA FSIAVDFPKTGVPAEIPS L KEYPDFM+K +K TY S VIGKLFR+VKD A
Sbjct: 881 KLAELFSIAVDFPKTGVPAEIPSQLRPKEYPDFMDKPPDKTTYISERVIGKLFRKVKDKA 940
Query: 698 PRTSCITAFTKEVAQRSYDRDMEVDGFEDYIDDAYYYKGEYDLKLGNMMDYYGIKTESEI 519
P+ S I FT++VA+RSYD D+EVDGFEDYID+A+ YK EYD KLGN+MDYYGIKTE+EI
Sbjct: 941 PQASSIAIFTRDVARRSYDADLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEI 1000
Query: 518 LGGSIMKMSKTFDRRRDVEAIGAAVKALKKEARTWFDEKNNTESGSQEDDVYKKASAWYH 339
L G IMK SKTFDRR+D EAI AV+AL+KEARTWF +N+ DD+ KASAWYH
Sbjct: 1001 LSGGIMKASKTFDRRKDAEAISVAVRALRKEARTWFKRRNDI------DDMLPKASAWYH 1054
Query: 338 VTYHPDYWGCYNEGMERDHYLSFPWCVYDKLIEIKQKKNSER 213
VTYHP YWGCYN+G++RDH++SFPWCVYD+LI+IK++K R
Sbjct: 1055 VTYHPTYWGCYNQGLKRDHFISFPWCVYDQLIQIKKEKARNR 1096
>ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Solanum
tuberosum] gi|565401229|ref|XP_006366110.1| PREDICTED:
RNA-dependent RNA polymerase 1-like isoform X2 [Solanum
tuberosum]
Length = 1115
Score = 1391 bits (3601), Expect = 0.0
Identities = 718/1141 (62%), Positives = 870/1141 (76%), Gaps = 6/1141 (0%)
Frame = -3
Query: 3569 MGRTIQVSGFPSDVSKETVKDFLEKHIGKGSIIALKIRQTKKIRSNSSAYAIVQFESIKN 3390
MG+TIQV GFP +S E VK FLEKH G G++ AL+++Q+K S A+A VQF +
Sbjct: 1 MGKTIQVYGFPDLLSAEVVKSFLEKHTGYGTVCALEVKQSK---GGSRAFAKVQFVDNIS 57
Query: 3389 AKDMSSLIYRRLYFGTSYLKVRQMKDDVVPKPRVLMLSVEATALHFGCQISDERFFALWK 3210
A + +L +RLYFG+SYLK R+M+ D+V + ++ L+FGCQISD++F A+
Sbjct: 58 ADKIINLASKRLYFGSSYLKAREMETDLVQLWEYVD-HMDGITLNFGCQISDDKF-AVLG 115
Query: 3209 AVDVIFNVGFGLRKLEFLLTHRHVEYKLELSYDSVWKIQLRHPQEQNTKFLLIQVSSAPR 3030
+ +V G GL+K F L+ +YKL+LSY+++W++ L P QN +FLLIQ+ APR
Sbjct: 116 STEVSIKFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPR 175
Query: 3029 IYEKCLSSSGDICKDPAFNYFRDTPDDQWVRATDFTTSSCIGQSSALCLELPNNSELPGI 2850
IY++ +S +++F++TPDDQWVR TDF S IG SS+LCL+ LP
Sbjct: 176 IYKRLENS--------CYSFFKETPDDQWVRTTDFAPS-WIGLSSSLCLQFRRGVHLPNF 226
Query: 2849 CENFHNYKEDDGLFFLEIGSTF--SHSTDLVPTVGPPQGLELPYNILFKINSLVQNGYLA 2676
E+F +Y E + L+ G TF S + LVP V PP+G+ +PY ILFKI+SLVQ+G +
Sbjct: 227 QESFFHYAERENNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIP 286
Query: 2675 GPTLDATFFRLVHPSYIPNITHIERALEKLSHSKESCYEPVKWLSEQYKKYLTSKHNPKS 2496
GP L+ FFRLV P N+ IE+ALEKL + KE CY+PV+WL+EQY YL + PKS
Sbjct: 287 GPALNVYFFRLVDPQR-RNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKS 345
Query: 2495 PSISLDDGLVYTRRVQVTPSKVYFCGPEINVSNRVLRKYHEAINNFIRVSFVDEDWEKMR 2316
PSI+LDDGLVY RRV VTP KVYFCGPE+NVSNRVLR Y E I+NF+RVSFVDE+WEK+
Sbjct: 346 PSINLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLY 405
Query: 2315 STDLSPRASTSQGKRHTDIYKRILSTLKNGIVIGDKKFEFLAFSSSQLRDNSVWMFAPLN 2136
STDL P+AST G R T+IY+RILSTL+ G VIGDKKFEFLAFSSSQLRDNSVWMFA
Sbjct: 406 STDLLPKASTGNGIR-TNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRP 464
Query: 2135 EITAANIREWMGDFREIRNVAKYSARLGQSFSSSMKSLTVHKHEIETIPDVEIEKNGKKY 1956
+TA +IR WMGDF +I+NVAKY+ARLGQSF SS ++L+V +HEIE IPDV++ +G Y
Sbjct: 465 GLTAIDIRTWMGDFSQIKNVAKYAARLGQSFGSSTETLSVLRHEIEVIPDVKV--HGTSY 522
Query: 1955 VFSDGIGKISAKFAQRVATKCGIQSSTPSAFQIRYGGYKGVVAVDPTSVNKLSLRKSMSK 1776
VFSDGIGKISA FA+RVA+KCG+Q TPSAFQIRYGGYKGVVAVDP S KLSLRKSMSK
Sbjct: 523 VFSDGIGKISADFARRVASKCGLQH-TPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSK 581
Query: 1775 YVSKNTSLDVLTWSKFQPCFLNRQLITLLSTLGVKDRIFEKKQKEAVDQLDVILTDPLRA 1596
Y S N LDVL WSK+QPC+LNRQL+TLLSTLGVKD + E+KQKEAVDQLD IL D L+A
Sbjct: 582 YESDNNKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVLEQKQKEAVDQLDAILHDSLKA 641
Query: 1595 QEALEIMSSGEGIDVLKEMLKCGYKPDVEPFLSMMLQTFRASKLLDLRNKTRIFLPKGRS 1416
QEALE+MS GE ++LK ML CGY PD EPFLSMMLQTFRASKLLDLR K+RIF+P GR
Sbjct: 642 QEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTKSRIFIPNGRL 701
Query: 1415 MMGCLDETGTLEYGQVFVQVSRVGNKQFGNNALSTSRGNESNQGSLIVEEKVFVAKNPCL 1236
MMGCLDE+ TLEYGQVFVQ + G+++F + L + S + I++ V VAKNPCL
Sbjct: 702 MMGCLDESRTLEYGQVFVQFTGSGHREFSED-LHPFNNSRSTNCNFILKGNVVVAKNPCL 760
Query: 1235 HPGDVRILQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPELIPPHQ 1056
HPGD+R+L+AV+VPAL HMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWD ++IPP Q
Sbjct: 761 HPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQ 820
Query: 1055 VTPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKARSDACI 876
V M+Y PA S+ LDHDVTIEEV+EYFTNYIVNDSLGIIANAH FAD+EP A SD C
Sbjct: 821 VQAMEYPPAPSIQLDHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCK 880
Query: 875 ELAMKFSIAVDFPKTGVPAEIPSHLHVKEYPDFMEK-LNKPTYESRCVIGKLFREVKDIA 699
+LA SIAVDFPKTGVPAEIP L KEYPDFM+K +K TY S VIGKL+R+VKD A
Sbjct: 881 KLAELCSIAVDFPKTGVPAEIPPQLRPKEYPDFMDKPPDKTTYISERVIGKLYRKVKDKA 940
Query: 698 PRTSCITAFTKEVAQRSYDRDMEVDGFEDYIDDAYYYKGEYDLKLGNMMDYYGIKTESEI 519
P+ S FT++VA+RSYD D+EVDGFEDYID+A+ YK EYD KLGN+MDYYGIKTE+EI
Sbjct: 941 PQASSTAIFTRDVARRSYDADLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEI 1000
Query: 518 LGGSIMKMSKTFDRRRDVEAIGAAVKALKKEARTWFDEKNNTESGSQEDDVYKKASAWYH 339
L G IMK SKTFDRR+D EAI AV+AL+KEARTWF +N+ DD+ KASAWYH
Sbjct: 1001 LSGGIMKTSKTFDRRKDAEAISIAVRALRKEARTWFKRRNDI------DDMLPKASAWYH 1054
Query: 338 VTYHPDYWGCYNEGMERDHYLSFPWCVYDKLIEIKQKKNSER---NLNHSLEIQFVRVLS 168
VTYHP YWGCYN+G++RDH++SFPWCVYD+LI+IK++K R NL+ SL Q R L
Sbjct: 1055 VTYHPTYWGCYNQGLKRDHFISFPWCVYDQLIQIKKEKARNRPVLNLS-SLRAQLSRKLV 1113
Query: 167 L 165
L
Sbjct: 1114 L 1114