BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia23_contig00008179
         (1667 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   791   0.0  
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V...   790   0.0  
emb|CAN82568.1| hypothetical protein VITISV_040047 [Vitis vinifera]   788   0.0  
ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   782   0.0  
ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [...   769   0.0  
emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]       769   0.0  
emb|CAN82339.1| hypothetical protein VITISV_039922 [Vitis vinifera]   769   0.0  
gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa...   766   0.0  
ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycoper...   765   0.0  
emb|CAA09896.1| RNA-directed RNA polymerase [Petunia x hybrida]       765   0.0  
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]      763   0.0  
gb|ABI34311.1| RNA dependent RNA polymerase family protein [Sola...   760   0.0  
ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   759   0.0  
gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]      759   0.0  
gb|ABO93006.1| putative RNA-dependent RNA-polymerase [Solanum tu...   758   0.0  
gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tu...   755   0.0  
gb|AAT38699.2| RNA dependent RNA polymerase family protein [Sola...   755   0.0  
gb|AHL27585.1| RNA-dependent RNA polymerase 2 [Salvia miltiorrhiza]   755   0.0  
ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Th...   755   0.0  
ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   754   0.0  

>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
          Length = 1132

 Score =  791 bits (2043), Expect = 0.0
 Identities = 403/566 (71%), Positives = 448/566 (79%), Gaps = 12/566 (2%)
 Frame = -3

Query: 1662 IREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTIPDVKIERDGTEYVFSDGI 1483
            IREWMGNFR+IRNVAKYAAR GQSFSSS ETL+V   EI+ IPDVKIE   T+YVFSDGI
Sbjct: 486  IREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGI 545

Query: 1482 GKISSEFAHRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKSMSKYRSENT 1303
            GK+S+EFA +VA KCG+K + PSAFQIRYGGYKGVVA DPTS KKLSLR SM KY SE T
Sbjct: 546  GKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELT 605

Query: 1302 SLDVLTWSKFQPGFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDPLRAQEALEV 1123
             LDVL WSK+QP FLNRQLI+LLSTLG+ D IFEKKQ+EAV QLD ILTDPL+AQEALE+
Sbjct: 606  KLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALEL 665

Query: 1122 MSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPNGRSMMGCLD 943
            MSPGEN N+LKE+L CGYKPDAEPFLSMMLQTFRASKLLELR KTRIF PNGRSMMGCLD
Sbjct: 666  MSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLD 725

Query: 942  ETRTLEYGQVFVQVSCVGHRQFHVNPFFIRNENELDQRSLIIMGKVIVAKNPCLHPGDVR 763
            ETRTL YGQVFVQ+S  G+RQ H       +     ++  I+ G V+VAKNPCLHPGDVR
Sbjct: 726  ETRTLNYGQVFVQISGAGYRQLHGESSLFSSSR--SRQRFIVQGLVVVAKNPCLHPGDVR 783

Query: 762  VLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIPRRQVKPMDY 583
            VL+AVNVPAL HMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WD ELIP +Q  PMDY
Sbjct: 784  VLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDY 843

Query: 582  TPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAESNACIELAMLF 403
            TPAQS+ LDHDV IE+V+EYFTNYIVNDSLGIIANAHT FAD+EP KA S  C++LA  F
Sbjct: 844  TPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPHKARSEPCLQLAEKF 903

Query: 402  SIAVDFPKTGVPAEIPSHLHVKEFP------------XXXXXXXXXXXXXXXXXXXXXXX 259
            SIAVDFPKTGVPAEIP HL+VKE+P                                   
Sbjct: 904  SIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIR 963

Query: 258  XXXXXXXXXSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKTESEILSGSIMK 79
                     SYD DMEVDGFED+ID+A Y+KG YD+KLGNLMDYYGIKTE+EIL+GSIMK
Sbjct: 964  LFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMK 1023

Query: 78   FSRLFDRRKDADAIGAAVRALKKEAR 1
             S+ F +R+DA+AIG AVRAL+KEAR
Sbjct: 1024 MSKSFTKRRDAEAIGMAVRALRKEAR 1049


>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
          Length = 1121

 Score =  790 bits (2039), Expect = 0.0
 Identities = 403/566 (71%), Positives = 445/566 (78%), Gaps = 12/566 (2%)
 Frame = -3

Query: 1662 IREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTIPDVKIERDGTEYVFSDGI 1483
            IR WMG+F  IRNVAKYAAR GQSFSSS ETL V + EI+ IPD++I +  T YVFSDGI
Sbjct: 471  IRSWMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKDEIENIPDIEIHKGRTTYVFSDGI 530

Query: 1482 GKISSEFAHRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKSMSKYRSENT 1303
            GKIS + AHRVAIKCG KSSTPSAFQIRYGGYKGVVAVDPTS +KLSLRKSM KY S+NT
Sbjct: 531  GKISPQLAHRVAIKCGCKSSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMFKYESDNT 590

Query: 1302 SLDVLTWSKFQPGFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDPLRAQEALEV 1123
            +LDVL WSK+QP FLNRQLITLLSTLGV+D +FEKKQ+ AVDQLD IL DP+ AQEALE+
Sbjct: 591  NLDVLAWSKYQPSFLNRQLITLLSTLGVKDHVFEKKQRAAVDQLDTILKDPVAAQEALEL 650

Query: 1122 MSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPNGRSMMGCLD 943
            MSPGEN NVLKEML CGYKPDAEPFLSMMLQTFRA+KLLELR KTRIF PNGRSMMGCLD
Sbjct: 651  MSPGENTNVLKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSMMGCLD 710

Query: 942  ETRTLEYGQVFVQVSCVGHRQFHVNPFFIRNENELDQRSLIIMGKVIVAKNPCLHPGDVR 763
            ETRTLEYG+VFVQ+S  G RQ   +    R        + I+ GK++VAKNPCLHPGDVR
Sbjct: 711  ETRTLEYGEVFVQISGTGGRQSFGDSLMFRGSGS-HHDNFILEGKIVVAKNPCLHPGDVR 769

Query: 762  VLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIPRRQVKPMDY 583
            VL AVNVP L HMVDCVVFPQKGKRPHPNECSGSDLDGDIYFV WD +LIP +Q+ PMDY
Sbjct: 770  VLWAVNVPTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDRDLIPPQQINPMDY 829

Query: 582  TPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAESNACIELAMLF 403
            TPA + +LDHDV IEEV+EYFTNYIVNDSLGIIANAHT FADKE  KA  + C ELA LF
Sbjct: 830  TPAPTKVLDHDVMIEEVEEYFTNYIVNDSLGIIANAHTVFADKEYDKAYCDPCTELAKLF 889

Query: 402  SIAVDFPKTGVPAEIPSHLHVKEFP------------XXXXXXXXXXXXXXXXXXXXXXX 259
            SIAVDFPKTGVPAEIP +L VKE+P                                   
Sbjct: 890  SIAVDFPKTGVPAEIPRNLRVKEYPDFMEKADKPTYESQSVIGKLFREVKDIAPHNCNIR 949

Query: 258  XXXXXXXXXSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKTESEILSGSIMK 79
                     SYD DMEV GFEDY+ +AFYYK EYD+KLGNLMDYYGIKTESEILSGSIM+
Sbjct: 950  SFTRDVARQSYDPDMEVVGFEDYVSDAFYYKSEYDYKLGNLMDYYGIKTESEILSGSIMR 1009

Query: 78   FSRLFDRRKDADAIGAAVRALKKEAR 1
             S+ FDRRKDA+AIG AV++L+KEAR
Sbjct: 1010 MSKSFDRRKDAEAIGLAVKSLRKEAR 1035


>emb|CAN82568.1| hypothetical protein VITISV_040047 [Vitis vinifera]
          Length = 697

 Score =  788 bits (2034), Expect = 0.0
 Identities = 405/567 (71%), Positives = 453/567 (79%), Gaps = 13/567 (2%)
 Frame = -3

Query: 1662 IREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTIPDVKIERDGTEYVFSDGI 1483
            IR  MG+F  IRNVAKYAAR GQSFSSS ETL V +HEI+ IPD++I RDGT YVFSDGI
Sbjct: 13   IRSRMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKHEIEIIPDIEIHRDGTTYVFSDGI 72

Query: 1482 GKISSEFAHRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKSMSKYRSENT 1303
            GKIS+E AHRVAIKCG KSSTPSAFQIRYGGYKGVVAVDPTS +KLSLRKSM KY SENT
Sbjct: 73   GKISAELAHRVAIKCGCKSSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMFKYESENT 132

Query: 1302 SLDVLTWSKFQPGFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDPLRAQEALEV 1123
            +LDVL+WSK++P FLNRQLITLLSTLGV+D +FEKKQ+EAVDQLD IL DPLRAQEALE+
Sbjct: 133  NLDVLSWSKYRPCFLNRQLITLLSTLGVKDHVFEKKQREAVDQLDTILKDPLRAQEALEL 192

Query: 1122 MSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPNGRSMMGCLD 943
            MSPGEN N+LKEML CGYKPDAEPFLSMMLQTFRA+KLLELR KTRIF PNGRSMMGCLD
Sbjct: 193  MSPGENTNILKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSMMGCLD 252

Query: 942  ETRTLEYGQVFVQVSCVGHRQ-FHVNPFFIRNENELDQRSLIIMGKVIVAKNPCLHPGDV 766
            ETRTLEYG+VFVQ+S  G RQ F  +  F  + +  D  + I+ GKV+VAKNPCLHPGDV
Sbjct: 253  ETRTLEYGEVFVQISGTGGRQSFGDSLMFYGSGSHHD--NFILEGKVVVAKNPCLHPGDV 310

Query: 765  RVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIPRRQVKPMD 586
            R+L AV+VPAL HMVDCVVFPQKG RPHP+ECSGSDLDGDIYFV WD +LIP RQ+ PMD
Sbjct: 311  RILSAVDVPALHHMVDCVVFPQKGMRPHPDECSGSDLDGDIYFVCWDHDLIPPRQINPMD 370

Query: 585  YTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAESNACIELAML 406
            YTPA + +LDHDV IEEV+EYFTNYI ND LGIIANAHT FADKE  KA    C ELA L
Sbjct: 371  YTPAPTKVLDHDVMIEEVEEYFTNYIGNDKLGIIANAHTVFADKEYDKALCPPCKELAKL 430

Query: 405  FSIAVDFPKTGVPAEIPSHLHVKEFP------------XXXXXXXXXXXXXXXXXXXXXX 262
            FSIA++FPKTGVPAEIP HLHVKE+P                                  
Sbjct: 431  FSIALEFPKTGVPAEIPFHLHVKEYPDFMEKANKPTYESQSVIGKLFREVKDVAPHNYDI 490

Query: 261  XXXXXXXXXXSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKTESEILSGSIM 82
                      SYD+DMEVDGFEDY+ +AFYYK +YDFKLG+LMD YGI+TESEILSGS+M
Sbjct: 491  RSFTRDVAMQSYDADMEVDGFEDYVRDAFYYKSQYDFKLGSLMDCYGIRTESEILSGSLM 550

Query: 81   KFSRLFDRRKDADAIGAAVRALKKEAR 1
            K S+ FD+RKDA+AI  AVR+L+KEAR
Sbjct: 551  KMSKSFDKRKDAEAIALAVRSLRKEAR 577


>ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
          Length = 1109

 Score =  782 bits (2019), Expect = 0.0
 Identities = 403/567 (71%), Positives = 451/567 (79%), Gaps = 13/567 (2%)
 Frame = -3

Query: 1662 IREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTIPDVKIERDGTEYVFSDGI 1483
            IR  MG+F  IRNVAKYAAR GQSFSSS ETL V +HEI+ IPD++  RDGT YVFSDGI
Sbjct: 469  IRSRMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKHEIEIIPDIETHRDGTTYVFSDGI 528

Query: 1482 GKISSEFAHRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKSMSKYRSENT 1303
            GKIS+E AHRVAIKCG K+STPSAFQIRYGGYKGVVAVDPTS +KLSLRKSM KY SENT
Sbjct: 529  GKISAELAHRVAIKCGCKNSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMFKYESENT 588

Query: 1302 SLDVLTWSKFQPGFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDPLRAQEALEV 1123
            +LDVL+WSK++P FLNRQLITLLSTLGV+D +FEKKQ+EAVDQLD IL DPLRAQEALE+
Sbjct: 589  NLDVLSWSKYRPCFLNRQLITLLSTLGVKDHVFEKKQREAVDQLDTILKDPLRAQEALEL 648

Query: 1122 MSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPNGRSMMGCLD 943
            MSPGEN N+LKEML CGYKPDAEPFLSMMLQTFRA+KLLELR KTRIF PNGRSMMGCLD
Sbjct: 649  MSPGENTNILKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSMMGCLD 708

Query: 942  ETRTLEYGQVFVQVSCVGHRQ-FHVNPFFIRNENELDQRSLIIMGKVIVAKNPCLHPGDV 766
            ETRTLEYG+VFVQ+S  G RQ F  +  F  + +  D  + I+ GKV+VAKNPCLHPGDV
Sbjct: 709  ETRTLEYGEVFVQISGTGGRQSFGDSLMFYGSGSHHD--NFILEGKVVVAKNPCLHPGDV 766

Query: 765  RVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIPRRQVKPMD 586
            R+L AV+VPAL HMVDCVVFPQKG RPHP+ECSGSDLDGDIYFV WD +LIP RQ+ PMD
Sbjct: 767  RILSAVDVPALHHMVDCVVFPQKGMRPHPDECSGSDLDGDIYFVCWDHDLIPPRQINPMD 826

Query: 585  YTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAESNACIELAML 406
            YTPA + +LDHDV IEEV+EYFTNYI ND LGIIANAHT FADKE  KA    C ELA L
Sbjct: 827  YTPAPTKVLDHDVMIEEVEEYFTNYIGNDKLGIIANAHTVFADKEYDKALCPPCKELAKL 886

Query: 405  FSIAVDFPKTGVPAEIPSHLHVKEFP------------XXXXXXXXXXXXXXXXXXXXXX 262
            FSIA++FPKTGVPAEIP HLHVKE+P                                  
Sbjct: 887  FSIALEFPKTGVPAEIPFHLHVKEYPDFMEKANKPTYESQSVIGKLFREVKDVAPHNYDV 946

Query: 261  XXXXXXXXXXSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKTESEILSGSIM 82
                      SYD+DMEVDGFEDY+ +AFYYK +YDFKLG+LMD  GI+TESEILSGSIM
Sbjct: 947  RSFTRDVAMQSYDADMEVDGFEDYVRDAFYYKSQYDFKLGSLMDCCGIRTESEILSGSIM 1006

Query: 81   KFSRLFDRRKDADAIGAAVRALKKEAR 1
            K S+ FD+RKDA+AI  AVR+L+KEAR
Sbjct: 1007 KMSKSFDKRKDAEAIALAVRSLRKEAR 1033


>ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa]
            gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
            family protein [Populus trichocarpa]
          Length = 1133

 Score =  770 bits (1987), Expect = 0.0
 Identities = 391/566 (69%), Positives = 440/566 (77%), Gaps = 12/566 (2%)
 Frame = -3

Query: 1662 IREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTIPDVKIERDGTEYVFSDGI 1483
            IR WMG+F  IRNVA+YAAR GQSF SS ETL+V  HEI+ IPD+++ R GT Y+FSDGI
Sbjct: 482  IRAWMGSFHKIRNVARYAARLGQSFGSSTETLSVSSHEIEIIPDIEVSRGGTRYLFSDGI 541

Query: 1482 GKISSEFAHRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKSMSKYRSENT 1303
            GKIS+EFA +VAIKCG K  TPSAFQIRY GYKGVVAVDPTS KKLSLR+SM KY SENT
Sbjct: 542  GKISAEFARKVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSSKKLSLRRSMFKYESENT 601

Query: 1302 SLDVLTWSKFQPGFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDPLRAQEALEV 1123
             LDVL  SK+QP FLNRQLITLLSTLGV D  FE+KQ+EAVDQLD +LTDPLRAQEALE+
Sbjct: 602  KLDVLAHSKYQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQLDAMLTDPLRAQEALEL 661

Query: 1122 MSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPNGRSMMGCLD 943
            MSPGEN N+LKEML CGY+PDAEPFLSMMLQTFRASKLLELR KTRIF PNGRSMMGCLD
Sbjct: 662  MSPGENTNILKEMLLCGYQPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLD 721

Query: 942  ETRTLEYGQVFVQVSCVGHRQFHVNPFFIRNENELDQRSLIIMGKVIVAKNPCLHPGDVR 763
            ETRTLE+GQVFV+ S    R  + +            +  +I G V+VAKNPCLHPGD+R
Sbjct: 722  ETRTLEHGQVFVKFSGSRFRNLYDSSDMFSERGR--GQCYLIKGSVVVAKNPCLHPGDLR 779

Query: 762  VLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIPRRQVKPMDY 583
            +L+AV+VPAL HMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WDPELIP +Q+ PMDY
Sbjct: 780  ILKAVDVPALHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPELIPSQQISPMDY 839

Query: 582  TPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAESNACIELAMLF 403
            TP   + LDHDVTIEEV+EYFTNYIVNDSLG+IANAHTA ADKE LKA S  C+ELA  F
Sbjct: 840  TPEPPLQLDHDVTIEEVEEYFTNYIVNDSLGVIANAHTAHADKESLKAMSEPCVELARKF 899

Query: 402  SIAVDFPKTGVPAEIPSHLHVKEFPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS-- 229
            SIAVDFPKTGVPAEIPS+L  +E+P                                S  
Sbjct: 900  SIAVDFPKTGVPAEIPSNLRAREYPDFMEKPDKPSYESRNVIGKLFREVKDIAPRTSSIR 959

Query: 228  ----------YDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKTESEILSGSIMK 79
                      YD DMEVDGFEDYID+AFYYK  YD+KLGNLM+YYGIKTE+E+LSGS MK
Sbjct: 960  SFTSDVARQCYDPDMEVDGFEDYIDDAFYYKSNYDYKLGNLMEYYGIKTEAELLSGSFMK 1019

Query: 78   FSRLFDRRKDADAIGAAVRALKKEAR 1
             S+ F +++DA+AIG AVR+LKKEAR
Sbjct: 1020 MSKSFTKKRDAEAIGMAVRSLKKEAR 1045


>emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]
          Length = 1116

 Score =  770 bits (1987), Expect = 0.0
 Identities = 397/568 (69%), Positives = 440/568 (77%), Gaps = 14/568 (2%)
 Frame = -3

Query: 1662 IREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTIPDVKIERDGTEYVFSDGI 1483
            IR WMG+FR IRNVAKYAAR GQSF SS ETL+V RHE++ IPDV     GT Y+FSDGI
Sbjct: 471  IRTWMGDFRQIRNVAKYAARLGQSFGSSRETLSVGRHEVEVIPDVACSLHGTNYIFSDGI 530

Query: 1482 GKISSEFAHRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKSMSKYRSENT 1303
            GKIS++FAHRV IKCG++  TPS+FQIRYGGYKGVVAVDP S  KLSLRKSM KY S N 
Sbjct: 531  GKISADFAHRVTIKCGLQY-TPSSFQIRYGGYKGVVAVDPYSSMKLSLRKSMLKYESNNI 589

Query: 1302 SLDVLTWSKFQPGFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDPLRAQEALEV 1123
             LDVL WSK+QP +LNRQL+TLLSTLGV D + E+KQ EAVDQLD IL D L+AQEALE+
Sbjct: 590  KLDVLGWSKYQPCYLNRQLVTLLSTLGVIDDVLEQKQNEAVDQLDAILHDSLKAQEALEL 649

Query: 1122 MSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPNGRSMMGCLD 943
            MSPGEN N+LKEML CGY PDAEPFLSMMLQTFRASKLL+LR +TRIF PNGR+MMGCLD
Sbjct: 650  MSPGENTNILKEMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRTRIFIPNGRTMMGCLD 709

Query: 942  ETRTLEYGQVFVQVSCVGHRQF--HVNPFFIRNENELDQRSLIIMGKVIVAKNPCLHPGD 769
            E+RTLEYGQVFVQ S  G RQF    +PF   N++       I+ G V+VAKNPCLHPGD
Sbjct: 710  ESRTLEYGQVFVQFSGAGRRQFFEESHPF---NDSGSANCDFILKGNVVVAKNPCLHPGD 766

Query: 768  VRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIPRRQVKPM 589
            +RVL+AV+VPAL HMVDCVVFPQKGKRPHPNECSGSDLDGDIYFV WDP+LIP RQV+ M
Sbjct: 767  IRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPDLIPPRQVQSM 826

Query: 588  DYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAESNACIELAM 409
            DYTPA +  LDHDVTIEEV+EYFTNYI+NDSLGIIANAH  FAD+EP  A S+ C +LA 
Sbjct: 827  DYTPAPTTQLDHDVTIEEVEEYFTNYIINDSLGIIANAHVVFADREPDMAMSDPCKQLAQ 886

Query: 408  LFSIAVDFPKTGVPAEIPSHLHVKEFPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS 229
            LFSIAVDFPKTGVPAEIPS L  KE+P                                S
Sbjct: 887  LFSIAVDFPKTGVPAEIPSQLRPKEYPDFMEKPDKPTYPSEKVIGKLFQKVKNKTPQASS 946

Query: 228  ------------YDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKTESEILSGSI 85
                        YDSDM VDGFEDYIDEAFYYK EYD KLGNLMDYYGIKTE+EILSG I
Sbjct: 947  IATFTRDVARKSYDSDMIVDGFEDYIDEAFYYKSEYDNKLGNLMDYYGIKTEAEILSGGI 1006

Query: 84   MKFSRLFDRRKDADAIGAAVRALKKEAR 1
            MK S+ FDRRKDA+AIG AVR L+KEAR
Sbjct: 1007 MKASKTFDRRKDAEAIGVAVRCLRKEAR 1034


>emb|CAN82339.1| hypothetical protein VITISV_039922 [Vitis vinifera]
          Length = 654

 Score =  769 bits (1986), Expect = 0.0
 Identities = 396/566 (69%), Positives = 438/566 (77%), Gaps = 12/566 (2%)
 Frame = -3

Query: 1662 IREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTIPDVKIERDGTEYVFSDGI 1483
            IR WMG+F  IRNVAKYAAR GQSFSSS ETL V + EI+ IPD++I +  T YVFSDGI
Sbjct: 13   IRSWMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKDEIENIPDIEIHKXRTTYVFSDGI 72

Query: 1482 GKISSEFAHRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKSMSKYRSENT 1303
            GKIS + AHRVAIKCG KSSTPSAFQIRYGGYKGVVAVDPTS +KLSLRKSM KY S+NT
Sbjct: 73   GKISPQLAHRVAIKCGCKSSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMFKYESDNT 132

Query: 1302 SLDVLTWSKFQPGFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDPLRAQEALEV 1123
            +LDVL WSK+QP FLNRQLITLLSTLGV+D +FEKKQ+ AVDQLD IL DP+ AQEALE+
Sbjct: 133  NLDVLAWSKYQPSFLNRQLITLLSTLGVKDHVFEKKQRAAVDQLDTILKDPVAAQEALEL 192

Query: 1122 MSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPNGRSMMGCLD 943
            MSPGEN NVLKEML CGYKPDAEPFLSMMLQTFRA+KLLELR KTRIF PNGRSMMGCLD
Sbjct: 193  MSPGENTNVLKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSMMGCLD 252

Query: 942  ETRTLEYGQVFVQVSCVGHRQFHVNPFFIRNENELDQRSLIIMGKVIVAKNPCLHPGDVR 763
            ETRTLEYG+VFVQ+S  G RQ   +    R        + I+ GK++VAKNPCLHPGDVR
Sbjct: 253  ETRTLEYGEVFVQISGTGGRQSFGDSLMFRGSGS-HHDNFILEGKIVVAKNPCLHPGDVR 311

Query: 762  VLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIPRRQVKPMDY 583
            VL AVNVP L HMVDCVVFPQKGKRPHPNECSGSDLDGDIYFV WD +LIP +Q+ PMDY
Sbjct: 312  VLXAVNVPTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDRDLIPPQQINPMDY 371

Query: 582  TPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAESNACIELAMLF 403
            TPA +         +EV+EYFTNYIVNDSLGIIANAHT FADKE  KA  + C ELA LF
Sbjct: 372  TPAPT---------KEVEEYFTNYIVNDSLGIIANAHTVFADKEYDKAYCDPCTELAKLF 422

Query: 402  SIAVDFPKTGVPAEIPSHLHVKEFP------------XXXXXXXXXXXXXXXXXXXXXXX 259
            SIAVDFPKTGVPAEIP +L VKE+P                                   
Sbjct: 423  SIAVDFPKTGVPAEIPRNLRVKEYPDFMEKADKPTYESQSVIGKLFREVKDIAPHNCNIR 482

Query: 258  XXXXXXXXXSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKTESEILSGSIMK 79
                     SYD DMEV GFEDY+ +AFYYK EYD+KLGNLMDYYGIKTESEILSGSIM+
Sbjct: 483  SFTRDVARQSYDPDMEVVGFEDYVSDAFYYKSEYDYKLGNLMDYYGIKTESEILSGSIMR 542

Query: 78   FSRLFDRRKDADAIGAAVRALKKEAR 1
             S+ FDRRKDA+AIG AV++L+KEAR
Sbjct: 543  MSKSFDRRKDAEAIGLAVKSLRKEAR 568


>gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
            gi|209420668|gb|ACI46982.1| RNA-dependent RNA polymerase
            [Nicotiana glutinosa]
          Length = 1117

 Score =  766 bits (1977), Expect = 0.0
 Identities = 393/568 (69%), Positives = 440/568 (77%), Gaps = 14/568 (2%)
 Frame = -3

Query: 1662 IREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTIPDVKIERDGTEYVFSDGI 1483
            IR WMG F+ IRNVAKYAAR GQSF SS ETL+V RHE++ IPDV     GT Y+FSDGI
Sbjct: 472  IRTWMGGFQQIRNVAKYAARLGQSFGSSRETLSVGRHEVEVIPDVVCSLHGTNYIFSDGI 531

Query: 1482 GKISSEFAHRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKSMSKYRSENT 1303
            GKIS++FA RVA+KCG++  TPS FQIRYGGYKGVVAVDP S  KLSLR SM KY S N 
Sbjct: 532  GKISADFARRVAVKCGLQY-TPSCFQIRYGGYKGVVAVDPYSSMKLSLRNSMLKYESNNI 590

Query: 1302 SLDVLTWSKFQPGFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDPLRAQEALEV 1123
             LDVL WSK+QP +LNRQL+TLLSTLGV+D +FE+KQ EAVDQLD IL D L+AQEALE+
Sbjct: 591  KLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVFEQKQNEAVDQLDAILHDTLKAQEALEL 650

Query: 1122 MSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPNGRSMMGCLD 943
            MSPGEN N+LKEML CGY PDAEPFLSMMLQTFRASKLL+LR ++RIF PNGR+MMGCLD
Sbjct: 651  MSPGENTNILKEMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRTMMGCLD 710

Query: 942  ETRTLEYGQVFVQVSCVGHRQFH--VNPFFIRNENELDQRSLIIMGKVIVAKNPCLHPGD 769
            E+RTLEYGQVFVQ +  G RQF+   +PF   N++       I+ G V+VAKNPCLHPGD
Sbjct: 711  ESRTLEYGQVFVQFTGTGRRQFYEESHPF---NDSGSTNCDFILEGNVVVAKNPCLHPGD 767

Query: 768  VRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIPRRQVKPM 589
            +RVL+AV+VPAL HMVDCVVFPQKGKRPHPNECSGSDLDGDIYFV WDP+L+P RQ +PM
Sbjct: 768  IRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPDLVPPRQFQPM 827

Query: 588  DYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAESNACIELAM 409
            DYTPA S  LDHDVTIEEV+EYFTNYIVNDSLGIIANAH  FAD+EP  A S+ C +LA 
Sbjct: 828  DYTPAPSTQLDHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKQLAQ 887

Query: 408  LFSIAVDFPKTGVPAEIPSHLHVKEFP------------XXXXXXXXXXXXXXXXXXXXX 265
            LFSIAVDFPKTGVPAEIPS L  KE+P                                 
Sbjct: 888  LFSIAVDFPKTGVPAEIPSQLRPKEYPDFMEKPDKPTYHSEKVIGKLFQKVKDKTPQASS 947

Query: 264  XXXXXXXXXXXSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKTESEILSGSI 85
                       SYD DM V+GFEDYIDEAFYYK EYD KLGNLMDYYGIKTE+EILSG I
Sbjct: 948  IANFTMDVARKSYDGDMIVNGFEDYIDEAFYYKSEYDNKLGNLMDYYGIKTEAEILSGGI 1007

Query: 84   MKFSRLFDRRKDADAIGAAVRALKKEAR 1
            MK S+ FDRRKDADAIG AVR+L+KEAR
Sbjct: 1008 MKASKTFDRRKDADAIGVAVRSLRKEAR 1035


>ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycopersicum]
            gi|4038592|emb|CAA71421.1| RNA-directed RNA polymerase
            [Solanum lycopersicum]
          Length = 1114

 Score =  765 bits (1976), Expect = 0.0
 Identities = 396/568 (69%), Positives = 443/568 (77%), Gaps = 14/568 (2%)
 Frame = -3

Query: 1662 IREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTIPDVKIERDGTEYVFSDGI 1483
            IR WMG+F  I+NVAKYAAR GQSF SS ETL+V RHEI+ IPDVK+   GT YVFSDGI
Sbjct: 471  IRAWMGDFSQIKNVAKYAARLGQSFGSSRETLSVLRHEIEVIPDVKVH--GTSYVFSDGI 528

Query: 1482 GKISSEFAHRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKSMSKYRSENT 1303
            GKIS +FAHRVA KCG++  TPSAFQIRYGGYKGVV VDP S  KLSLRKSMSKY S+N 
Sbjct: 529  GKISGDFAHRVASKCGLQY-TPSAFQIRYGGYKGVVGVDPDSSMKLSLRKSMSKYESDNI 587

Query: 1302 SLDVLTWSKFQPGFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDPLRAQEALEV 1123
             LDVL WSK+QP +LNRQLITLLSTLGV+D + E+KQKEAVDQLD IL D L+AQEALE+
Sbjct: 588  KLDVLGWSKYQPCYLNRQLITLLSTLGVKDEVLEQKQKEAVDQLDAILHDSLKAQEALEL 647

Query: 1122 MSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPNGRSMMGCLD 943
            MSPGEN N+LK ML CGYKPDAEPFLSMMLQTFRASKLL+LR ++RIF PNGR+MMGCLD
Sbjct: 648  MSPGENTNILKAMLNCGYKPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRTMMGCLD 707

Query: 942  ETRTLEYGQVFVQVSCVGHRQF--HVNPFFIRNENELDQRSLIIMGKVIVAKNPCLHPGD 769
            E+RTLEYGQVFVQ +  GH +F   ++PF   N +     + I+ G V+VAKNPCLHPGD
Sbjct: 708  ESRTLEYGQVFVQFTGAGHGEFSDDLHPF---NNSRSTNSNFILKGNVVVAKNPCLHPGD 764

Query: 768  VRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIPRRQVKPM 589
            +RVL+AVNV AL HMVDCVVFPQKGKRPHPNECSGSDLDGDIYFV WD ++IP RQV+PM
Sbjct: 765  IRVLKAVNVRALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQPM 824

Query: 588  DYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAESNACIELAM 409
            +Y PA S+ LDHDVTIEEV+EYFTNYIVNDSLGIIANAH  FAD+EP  A S+ C +LA 
Sbjct: 825  EYPPAPSIQLDHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAE 884

Query: 408  LFSIAVDFPKTGVPAEIPSHLHVKEFP------------XXXXXXXXXXXXXXXXXXXXX 265
            LFSIAVDFPKTGVPAEIPS L  KE+P                                 
Sbjct: 885  LFSIAVDFPKTGVPAEIPSQLRPKEYPDFMDKPDKTSYISERVIGKLFRKVKDKAPQASS 944

Query: 264  XXXXXXXXXXXSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKTESEILSGSI 85
                       SYD+DMEVDGFEDYIDEAF YK EYD KLGNLMDYYGIKTE+EILSG I
Sbjct: 945  IATFTRDVARRSYDADMEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGI 1004

Query: 84   MKFSRLFDRRKDADAIGAAVRALKKEAR 1
            MK S+ FDRRKDA+AI  AVRAL+KEAR
Sbjct: 1005 MKASKTFDRRKDAEAISVAVRALRKEAR 1032


>emb|CAA09896.1| RNA-directed RNA polymerase [Petunia x hybrida]
          Length = 775

 Score =  765 bits (1975), Expect = 0.0
 Identities = 392/566 (69%), Positives = 443/566 (78%), Gaps = 12/566 (2%)
 Frame = -3

Query: 1662 IREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTIPDVKIERDGTEYVFSDGI 1483
            IR WMG+F+ IRNVAKYAAR GQSF SS ETL+V RHEI  IPDV++   GT YVFSDGI
Sbjct: 164  IRTWMGDFQQIRNVAKYAARLGQSFGSSRETLSVGRHEIKYIPDVEVH--GTNYVFSDGI 221

Query: 1482 GKISSEFAHRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKSMSKYRSENT 1303
            GKIS++FAHRVA KCG++  TPSAFQIRYGGYKGVVAVDP S  KLSLRKSM KY S NT
Sbjct: 222  GKISADFAHRVAKKCGLQH-TPSAFQIRYGGYKGVVAVDPYSPMKLSLRKSMLKYESNNT 280

Query: 1302 SLDVLTWSKFQPGFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDPLRAQEALEV 1123
             LDVL WSK+QP +LNRQL+TL+STLGV+D +F++KQ EAV QLD IL D L+AQEAL++
Sbjct: 281  KLDVLGWSKYQPCYLNRQLVTLMSTLGVKDEVFKRKQNEAVAQLDAILHDSLKAQEALDL 340

Query: 1122 MSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPNGRSMMGCLD 943
            MSPGEN N+LKEML CGY PDAEPFLSMMLQTFRASKLL+LR +TRIF P GRSMMGCLD
Sbjct: 341  MSPGENTNILKEMLNCGYLPDAEPFLSMMLQTFRASKLLDLRTRTRIFIPKGRSMMGCLD 400

Query: 942  ETRTLEYGQVFVQVSCVGHRQFHVNPFFIRNENELDQRSLIIMGKVIVAKNPCLHPGDVR 763
            E+RTLEYGQVFVQ +  G RQF+       N++     + I+ G V+VAKNPCLHPGD+R
Sbjct: 401  ESRTLEYGQVFVQFTGAGGRQFYEESHHF-NDSGSANYNFILKGNVVVAKNPCLHPGDIR 459

Query: 762  VLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIPRRQVKPMDY 583
            VL+AV+VPAL HMVDCVVFPQKGKRPHPNECSGSDLDGDIYFV WDP+LIP RQV+PMDY
Sbjct: 460  VLKAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPDLIPPRQVQPMDY 519

Query: 582  TPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAESNACIELAMLF 403
            TPA S+ LDHDVTIEEV+EYFTNY+VND LG+IANAH  FAD+EP  A S+ CIELA LF
Sbjct: 520  TPAPSIQLDHDVTIEEVEEYFTNYMVNDGLGVIANAHVVFADREPNMAMSDPCIELAQLF 579

Query: 402  SIAVDFPKTGVPAEIPSHLHVKEFP------------XXXXXXXXXXXXXXXXXXXXXXX 259
            SIAVDFPKTGVPAEIPS L  KE+P                                   
Sbjct: 580  SIAVDFPKTGVPAEIPSQLRPKEYPDFMEKPDKTTYHSEKVIGKLFREVKDKTTQASSIT 639

Query: 258  XXXXXXXXXSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKTESEILSGSIMK 79
                     SYD+D+EVDGFEDYIDEAF YK EYD KLGNLMDYYGIKTE+E LSG IMK
Sbjct: 640  TFTRDVARRSYDTDLEVDGFEDYIDEAFDYKSEYDKKLGNLMDYYGIKTEAETLSGGIMK 699

Query: 78   FSRLFDRRKDADAIGAAVRALKKEAR 1
             S+ FDRR+DA+AIG AVR+L+KEAR
Sbjct: 700  ASKTFDRRRDAEAIGVAVRSLRKEAR 725


>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score =  763 bits (1970), Expect = 0.0
 Identities = 389/566 (68%), Positives = 437/566 (77%), Gaps = 12/566 (2%)
 Frame = -3

Query: 1662 IREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTIPDVKIERDGTEYVFSDGI 1483
            IR WMGNF  IRNVAKYAAR GQSFSSS ETL+V + EI+ IPD++I +DG +YVFSDGI
Sbjct: 475  IRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYVFSDGI 534

Query: 1482 GKISSEFAHRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKSMSKYRSENT 1303
            GKIS+EFA +VA KC +K  TPSAFQIR GG+KGVVA+DPTS  KLSLRKSM KY SENT
Sbjct: 535  GKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSMEKYESENT 594

Query: 1302 SLDVLTWSKFQPGFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDPLRAQEALEV 1123
             LDVL WSK+QP FLNRQLITLLSTLGV DR FEKKQ+E VDQL+ +LTDPL AQEALE+
Sbjct: 595  KLDVLAWSKYQPCFLNRQLITLLSTLGVPDRAFEKKQREVVDQLNALLTDPLEAQEALEL 654

Query: 1122 MSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPNGRSMMGCLD 943
            MSPGEN N+LKEML CGYKPDAEPFLSMML+TFRASKLLELR K RIF   GRSMMGCLD
Sbjct: 655  MSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGRSMMGCLD 714

Query: 942  ETRTLEYGQVFVQVSCVGHRQFHVNPFFIRNENELDQRSLIIMGKVIVAKNPCLHPGDVR 763
            ETRTL YGQVFVQ S  G R                +R  I+ GKVIVAKNPCLHPGDVR
Sbjct: 715  ETRTLNYGQVFVQFS--GSR---------------SERRFIVQGKVIVAKNPCLHPGDVR 757

Query: 762  VLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIPRRQVKPMDY 583
            VL+AVNVP L HMVDCVVFPQKG RPHPNECSGSDLDGD+YFV WDPELIP +Q+ PMDY
Sbjct: 758  VLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYKQIDPMDY 817

Query: 582  TPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAESNACIELAMLF 403
            +PA +  LDH+VTIEE++EYFTNYIVNDSLGII+NAHTAFAD+EP KA S  C+ELA LF
Sbjct: 818  SPASTTKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPDKAMSRPCLELAKLF 877

Query: 402  SIAVDFPKTGVPAEIPSHLHVKEFPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS-- 229
            SIAVDFPKTGVPAEIP  L VKE+P                                S  
Sbjct: 878  SIAVDFPKTGVPAEIPQELRVKEYPDFMEKPDKPSYQSHNVIGKLFREVKNLAPNECSIK 937

Query: 228  ----------YDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKTESEILSGSIMK 79
                      YD DMEV+GFEDYID+AF++K +YD+KLGNLMDYYG+KTE+EIL G IMK
Sbjct: 938  FLTREKMQRFYDPDMEVEGFEDYIDDAFFHKSKYDYKLGNLMDYYGVKTEAEILGGGIMK 997

Query: 78   FSRLFDRRKDADAIGAAVRALKKEAR 1
             SR F +++DA+AI  AVR+L+KEAR
Sbjct: 998  MSRSFTKKRDAEAISMAVRSLRKEAR 1023


>gb|ABI34311.1| RNA dependent RNA polymerase family protein [Solanum demissum]
          Length = 963

 Score =  760 bits (1963), Expect = 0.0
 Identities = 394/569 (69%), Positives = 444/569 (78%), Gaps = 15/569 (2%)
 Frame = -3

Query: 1662 IREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTIPDVKIERDGTEYVFSDGI 1483
            IR WMG+F  I+NVAKYAAR GQSF SS ETL+V RHEI+ IPDVK+   GT YVFSDGI
Sbjct: 319  IRTWMGDFSQIKNVAKYAARLGQSFGSSKETLSVLRHEIEVIPDVKVH--GTSYVFSDGI 376

Query: 1482 GKISSEFAHRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKSMSKYRSENT 1303
            GKIS++FA RVA KCG++  TPSAFQIRYGGYKGVVAVDP S  KLSLRKSMSKY S+N 
Sbjct: 377  GKISADFARRVASKCGLQY-TPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNN 435

Query: 1302 SLDVLTWSKFQPGFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDPLRAQEALEV 1123
             LDVL WSK+QP +LNRQLITLLSTLGV+D + E+KQKEAVDQLD IL D L+AQEALE+
Sbjct: 436  KLDVLEWSKYQPCYLNRQLITLLSTLGVKDDVLEQKQKEAVDQLDAILHDSLKAQEALEL 495

Query: 1122 MSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPNGRSMMGCLD 943
            MSPGEN N+LK ML CGY PDAEPFLSMMLQTFRASKLL+LR K+RIF PNGR+MMGCLD
Sbjct: 496  MSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTKSRIFIPNGRAMMGCLD 555

Query: 942  ETRTLEYGQVFVQVSCVGHRQF--HVNPFFIRNENELDQRSLIIMGKVIVAKNPCLHPGD 769
            E+RTLEYGQVFVQ +  GHR+F   ++PF   N +     + I+ G V+VAKNPCLHPGD
Sbjct: 556  ESRTLEYGQVFVQFTGAGHREFSEDLHPF---NNSRSTNCNFILKGNVVVAKNPCLHPGD 612

Query: 768  VRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIPRRQVKPM 589
            +RVL+AV+VPAL HMVDCVVFPQKGKRPHPNECSGSDLDGDIYFV WD ++IP RQV+PM
Sbjct: 613  IRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQPM 672

Query: 588  DYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAESNACIELAM 409
            +Y PA S+ LDHDVTIEEV+EYFTNYIVNDSLGII+NAH  FAD+EP  A S+ C +LA 
Sbjct: 673  EYPPAPSIQLDHDVTIEEVEEYFTNYIVNDSLGIISNAHVVFADREPDMAMSDPCKKLAE 732

Query: 408  LFSIAVDFPKTGVPAEIPSHLHVKEFP-------------XXXXXXXXXXXXXXXXXXXX 268
            L SIAVDFPKTGVPAEIPS L  KE+P                                 
Sbjct: 733  LCSIAVDFPKTGVPAEIPSQLRPKEYPDFMDKPPDKTTYISERVIGKLFRKVKDKAPQAS 792

Query: 267  XXXXXXXXXXXXSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKTESEILSGS 88
                        SYD+D+EVDGFEDYIDEAF YK EYD KLGNLMDYYGIKTE+EILSG 
Sbjct: 793  STAIFTRDVARRSYDADLEVDGFEDYIDEAFDYKTEYDSKLGNLMDYYGIKTEAEILSGG 852

Query: 87   IMKFSRLFDRRKDADAIGAAVRALKKEAR 1
            IMK S+ FDRRKDA+AI  AVRAL+KEAR
Sbjct: 853  IMKTSKTFDRRKDAEAISIAVRALRKEAR 881


>ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Solanum tuberosum]
          Length = 1115

 Score =  759 bits (1961), Expect = 0.0
 Identities = 394/569 (69%), Positives = 444/569 (78%), Gaps = 15/569 (2%)
 Frame = -3

Query: 1662 IREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTIPDVKIERDGTEYVFSDGI 1483
            IR WMG+F  I+NVAKYAAR GQSF SS ETL+V RHEI+ IPDVK+   GT YVFSDGI
Sbjct: 471  IRTWMGDFSQIKNVAKYAARLGQSFGSSKETLSVLRHEIEIIPDVKVH--GTSYVFSDGI 528

Query: 1482 GKISSEFAHRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKSMSKYRSENT 1303
            GKIS++FA RVA KCG++  TPSAFQIRYGGYKGVVAVDP S  KLSLRKSMSKY S+N 
Sbjct: 529  GKISADFARRVASKCGLQY-TPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNN 587

Query: 1302 SLDVLTWSKFQPGFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDPLRAQEALEV 1123
             LDVL WSK+QP FLNRQL+TLLSTLGV+D + E+KQKEAVDQLD IL D L+AQEALE+
Sbjct: 588  KLDVLEWSKYQPCFLNRQLVTLLSTLGVKDDVLEQKQKEAVDQLDAILHDSLKAQEALEL 647

Query: 1122 MSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPNGRSMMGCLD 943
            MSPGEN N+LK ML CGY PDAEPFLSMMLQTFRASKLL+LR ++RIF PNGR+MMGCLD
Sbjct: 648  MSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRAMMGCLD 707

Query: 942  ETRTLEYGQVFVQVSCVGHRQF--HVNPFFIRNENELDQRSLIIMGKVIVAKNPCLHPGD 769
            E+RTLEYGQVFVQ +  GHR+F   ++PF   N +     + I+ G V+VAKNPCLHPGD
Sbjct: 708  ESRTLEYGQVFVQFTGSGHREFSEDLHPF---NNSRSTNCNFILKGNVVVAKNPCLHPGD 764

Query: 768  VRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIPRRQVKPM 589
            +RVL+AV+VPAL HMVDCVVFPQKGKRPHPNECSGSDLDGDIYFV WD ++IP RQV+ M
Sbjct: 765  IRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQAM 824

Query: 588  DYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAESNACIELAM 409
            +Y PA S+ LDHDVTIEEV+EYFTNYIVNDSLGIIANAH  FAD+EP  A S+ C +LA 
Sbjct: 825  EYPPAPSIQLDHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAE 884

Query: 408  LFSIAVDFPKTGVPAEIPSHLHVKEFP-------------XXXXXXXXXXXXXXXXXXXX 268
            LFSIAVDFPKTGVPAEIPS L  KE+P                                 
Sbjct: 885  LFSIAVDFPKTGVPAEIPSQLRPKEYPDFMDKPPDKTTYISERVIGKLYRKVKDKAPQAS 944

Query: 267  XXXXXXXXXXXXSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKTESEILSGS 88
                        SYD+D+EVDGFEDYIDEAF YK EYD KLGNLMDYYGIKTE+EILSG 
Sbjct: 945  STAIFTRDVARRSYDADLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGG 1004

Query: 87   IMKFSRLFDRRKDADAIGAAVRALKKEAR 1
            IMK S+ FDRRKDA+AI  AVRAL+KEAR
Sbjct: 1005 IMKTSKTFDRRKDAEAISIAVRALRKEAR 1033


>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score =  759 bits (1960), Expect = 0.0
 Identities = 388/566 (68%), Positives = 435/566 (76%), Gaps = 12/566 (2%)
 Frame = -3

Query: 1662 IREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTIPDVKIERDGTEYVFSDGI 1483
            IR WMGNF  IRNVAKYAAR GQSFSSS ETL+V + EI+ IPD++I +DG +YVF DGI
Sbjct: 475  IRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYVFPDGI 534

Query: 1482 GKISSEFAHRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKSMSKYRSENT 1303
            GKIS+EFA +VA KC +K  TPSAFQIR GG+KGVVA+DPTS  KLSLRKSM KY SENT
Sbjct: 535  GKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSMEKYESENT 594

Query: 1302 SLDVLTWSKFQPGFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDPLRAQEALEV 1123
             LDVL WSK+QP FLNRQLITLLSTLGV D  FEKKQ+E VDQL+ +LTDPL AQEALE+
Sbjct: 595  KLDVLAWSKYQPCFLNRQLITLLSTLGVPDYAFEKKQREVVDQLNALLTDPLEAQEALEL 654

Query: 1122 MSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPNGRSMMGCLD 943
            MSPGEN N+LKEML CGYKPDAEPFLSMML+TFRASKLLELR K RIF   GRSMMGCLD
Sbjct: 655  MSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGRSMMGCLD 714

Query: 942  ETRTLEYGQVFVQVSCVGHRQFHVNPFFIRNENELDQRSLIIMGKVIVAKNPCLHPGDVR 763
            ETRTL YGQVFVQ S  G R                +R  I+ GKVIVAKNPCLHPGDVR
Sbjct: 715  ETRTLNYGQVFVQFS--GSR---------------SERRFIVQGKVIVAKNPCLHPGDVR 757

Query: 762  VLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIPRRQVKPMDY 583
            VL+AVNVP L HMVDCVVFPQKG RPHPNECSGSDLDGD+YFV WDPELIP +Q+ PMDY
Sbjct: 758  VLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYKQIDPMDY 817

Query: 582  TPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAESNACIELAMLF 403
            +PA +  LDH+VTIEE++EYFTNYIVNDSLGII+NAHTAFAD+EP KA S  C+ELA LF
Sbjct: 818  SPASTTKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPGKAMSRPCLELAKLF 877

Query: 402  SIAVDFPKTGVPAEIPSHLHVKEFPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS-- 229
            SIAVDFPKTGVPAEIP  L VKEFP                                S  
Sbjct: 878  SIAVDFPKTGVPAEIPQELRVKEFPDFMEKPDKPSYQSYNVIGKLFREVKNLAPNECSIK 937

Query: 228  ----------YDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKTESEILSGSIMK 79
                      YD DMEV+GF DYID+AF+YK +YD+KLGNLMDYYG+KTE+EILSG IMK
Sbjct: 938  LLTREKMKRFYDPDMEVEGFVDYIDDAFFYKSKYDYKLGNLMDYYGVKTEAEILSGGIMK 997

Query: 78   FSRLFDRRKDADAIGAAVRALKKEAR 1
             SR F +++DA++I  AVR+L+KEAR
Sbjct: 998  MSRSFTKKRDAESISMAVRSLRKEAR 1023


>gb|ABO93006.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
          Length = 1065

 Score =  758 bits (1956), Expect = 0.0
 Identities = 394/569 (69%), Positives = 443/569 (77%), Gaps = 15/569 (2%)
 Frame = -3

Query: 1662 IREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTIPDVKIERDGTEYVFSDGI 1483
            IR WMG+F  I+NVAKYAAR GQSF SS ETL+V RHEI+ IPDVK+   GT YVFSDGI
Sbjct: 470  IRTWMGDFSQIKNVAKYAARLGQSFGSSKETLSVLRHEIEVIPDVKVH--GTSYVFSDGI 527

Query: 1482 GKISSEFAHRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKSMSKYRSENT 1303
            GKIS++FA RVA KCG++  TPSAFQIRYGGYKGVVAVDP S  KLSLRKSMSKY S+N 
Sbjct: 528  GKISADFARRVASKCGLQY-TPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNN 586

Query: 1302 SLDVLTWSKFQPGFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDPLRAQEALEV 1123
             LDVL WSK+QP +LNRQLITLLSTLGV+D I E+KQKEAVDQLD IL D L+AQEALE+
Sbjct: 587  KLDVLGWSKYQPCYLNRQLITLLSTLGVKDDILEQKQKEAVDQLDAILHDSLKAQEALEL 646

Query: 1122 MSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPNGRSMMGCLD 943
            MSPGEN N+LK ML CGY PDAEPFLSMMLQTFRASKLL+LR K+RIF PNGR+MMGCLD
Sbjct: 647  MSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTKSRIFIPNGRAMMGCLD 706

Query: 942  ETRTLEYGQVFVQVSCVGHRQF--HVNPFFIRNENELDQRSLIIMGKVIVAKNPCLHPGD 769
            E+RTLEYGQVFVQ +  GHR+F   ++PF   N +     + I+ G V+VAKNPCLHPGD
Sbjct: 707  ESRTLEYGQVFVQFTGAGHREFSEDLHPF---NNSRSTNCNFILKGNVVVAKNPCLHPGD 763

Query: 768  VRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIPRRQVKPM 589
            +RVL+AV+VPAL HMVDCVVFPQKGKRPHPNECSGSDLDGDIYFV WD ++IP RQV+PM
Sbjct: 764  IRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQPM 823

Query: 588  DYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAESNACIELAM 409
            +Y PA S+ LDHDVTIEEV+EYFTNYIVNDSLGII+NAH  FAD+EP  A S+ C +LA 
Sbjct: 824  EYPPAPSIQLDHDVTIEEVEEYFTNYIVNDSLGIISNAHVVFADREPDMAMSDPCKKLAE 883

Query: 408  LFSIAVDFPKTGVPAEIPSHLHVKEFP-------------XXXXXXXXXXXXXXXXXXXX 268
            L SIAVDFPKTGVPAEIPS    KE+P                                 
Sbjct: 884  LCSIAVDFPKTGVPAEIPSQWRPKEYPDFMDKPPDKTTYISERVIGKLYRKVKDKAPQAS 943

Query: 267  XXXXXXXXXXXXSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKTESEILSGS 88
                        SYD+D+EVDGFEDYIDEAF YK EYD KLGNLMDYYGIKTE+EILSG 
Sbjct: 944  STAIFTRDVARRSYDADLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGG 1003

Query: 87   IMKFSRLFDRRKDADAIGAAVRALKKEAR 1
            IMK S+ FDRRKDA+AI  AVRAL+KEAR
Sbjct: 1004 IMKTSKTFDRRKDAEAISIAVRALRKEAR 1032


>gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
          Length = 1115

 Score =  755 bits (1950), Expect = 0.0
 Identities = 391/569 (68%), Positives = 443/569 (77%), Gaps = 15/569 (2%)
 Frame = -3

Query: 1662 IREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTIPDVKIERDGTEYVFSDGI 1483
            IR WMG+F  I+NVAKYAAR GQSF SS ETL+V RHEI+ IPDVK+   GT YVFSDGI
Sbjct: 471  IRSWMGDFSQIKNVAKYAARLGQSFGSSRETLSVLRHEIEVIPDVKVH--GTSYVFSDGI 528

Query: 1482 GKISSEFAHRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKSMSKYRSENT 1303
            GKIS++FA RVA KCG++  TPSAFQIRYGGYKGVVAVDP S  KLSLRKSMSKY S+N 
Sbjct: 529  GKISADFARRVASKCGLQY-TPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNN 587

Query: 1302 SLDVLTWSKFQPGFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDPLRAQEALEV 1123
             LDVL WSK+QP +LNRQL+TLLSTLGV+D + E+KQKEAV QLD IL D L+AQEALE+
Sbjct: 588  KLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVLEQKQKEAVHQLDAILHDSLKAQEALEL 647

Query: 1122 MSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPNGRSMMGCLD 943
            MSPGEN N+LK ML CGY PDAEPFLSMMLQTFRASKLL+LR ++RIF PNGR+MMGCLD
Sbjct: 648  MSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRAMMGCLD 707

Query: 942  ETRTLEYGQVFVQVSCVGHRQF--HVNPFFIRNENELDQRSLIIMGKVIVAKNPCLHPGD 769
            E+RTLEYGQVFVQ +  GHR+F   ++PF   N +     + I+ G V+VAKNPCLHPGD
Sbjct: 708  ESRTLEYGQVFVQFTGAGHREFSEDLHPF---NNSRSTNCNFILKGNVVVAKNPCLHPGD 764

Query: 768  VRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIPRRQVKPM 589
            +RVL+AV+VPAL HMVDCVVFPQKGKRPHPNECSGSDLDGDIYFV WD ++IP RQV+ M
Sbjct: 765  IRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQAM 824

Query: 588  DYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAESNACIELAM 409
            +Y PA S+ LDH+VTIEEV+EYFTNYIVNDSLGIIANAH  FAD+EP  A S+ C +LA 
Sbjct: 825  EYPPAPSIQLDHNVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAE 884

Query: 408  LFSIAVDFPKTGVPAEIPSHLHVKEFP-------------XXXXXXXXXXXXXXXXXXXX 268
            LFSIAVDFPKTGVPAEIPS L  KE+P                                 
Sbjct: 885  LFSIAVDFPKTGVPAEIPSQLRPKEYPDFMDKPPDKTTYISERVIGKLFRKVKDKAPQAS 944

Query: 267  XXXXXXXXXXXXSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKTESEILSGS 88
                        SYD+D+EVDGFEDYIDEAF YK EYD KLGNLMDYYGIKTE+EILSG 
Sbjct: 945  SIAIFTRDVARRSYDADLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGG 1004

Query: 87   IMKFSRLFDRRKDADAIGAAVRALKKEAR 1
            IMK S+ FDRRKDA+AI  AVRAL+KEAR
Sbjct: 1005 IMKASKTFDRRKDAEAISVAVRALRKEAR 1033


>gb|AAT38699.2| RNA dependent RNA polymerase family protein [Solanum demissum]
          Length = 963

 Score =  755 bits (1950), Expect = 0.0
 Identities = 391/569 (68%), Positives = 443/569 (77%), Gaps = 15/569 (2%)
 Frame = -3

Query: 1662 IREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTIPDVKIERDGTEYVFSDGI 1483
            IR WMG+F  I+NVAKYAAR GQSF SS ETL+V RHEI+ IPDVK+   GT YVFSDGI
Sbjct: 319  IRSWMGDFSQIKNVAKYAARLGQSFGSSRETLSVLRHEIEVIPDVKVH--GTSYVFSDGI 376

Query: 1482 GKISSEFAHRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKSMSKYRSENT 1303
            GKIS++FA RVA KCG++  TPSAFQIRYGGYKGVVAVDP S  KLSLRKSMSKY S+N 
Sbjct: 377  GKISADFARRVASKCGLQY-TPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNN 435

Query: 1302 SLDVLTWSKFQPGFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDPLRAQEALEV 1123
             LDVL WSK+QP +LNRQL+TLLSTLGV+D + E+KQKEAV QLD IL D L+AQEALE+
Sbjct: 436  KLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVLEQKQKEAVHQLDAILHDSLKAQEALEL 495

Query: 1122 MSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPNGRSMMGCLD 943
            MSPGEN N+LK ML CGY PDAEPFLSMMLQTFRASKLL+LR ++RIF PNGR+MMGCLD
Sbjct: 496  MSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRAMMGCLD 555

Query: 942  ETRTLEYGQVFVQVSCVGHRQF--HVNPFFIRNENELDQRSLIIMGKVIVAKNPCLHPGD 769
            E+RTLEYGQVFVQ +  GHR+F   ++PF   N +     + I+ G V+VAKNPCLHPGD
Sbjct: 556  ESRTLEYGQVFVQFTGAGHREFSEDLHPF---NNSRSTNCNFILKGNVVVAKNPCLHPGD 612

Query: 768  VRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIPRRQVKPM 589
            +RVL+AV+VPAL HMVDCVVFPQKGKRPHPNECSGSDLDGDIYFV WD ++IP RQV+ M
Sbjct: 613  IRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQAM 672

Query: 588  DYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAESNACIELAM 409
            +Y PA S+ LDH+VTIEEV+EYFTNYIVNDSLGIIANAH  FAD+EP  A S+ C +LA 
Sbjct: 673  EYPPAPSIQLDHNVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAE 732

Query: 408  LFSIAVDFPKTGVPAEIPSHLHVKEFP-------------XXXXXXXXXXXXXXXXXXXX 268
            LFSIAVDFPKTGVPAEIPS L  KE+P                                 
Sbjct: 733  LFSIAVDFPKTGVPAEIPSQLRPKEYPDFMDKPPDKTTYISERVIGKLFRKVKDKAPQAS 792

Query: 267  XXXXXXXXXXXXSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKTESEILSGS 88
                        SYD+D+EVDGFEDYIDEAF YK EYD KLGNLMDYYGIKTE+EILSG 
Sbjct: 793  SIAIFTRDVARRSYDADLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGG 852

Query: 87   IMKFSRLFDRRKDADAIGAAVRALKKEAR 1
            IMK S+ FDRRKDA+AI  AVRAL+KEAR
Sbjct: 853  IMKASKTFDRRKDAEAISVAVRALRKEAR 881


>gb|AHL27585.1| RNA-dependent RNA polymerase 2 [Salvia miltiorrhiza]
          Length = 1101

 Score =  755 bits (1949), Expect = 0.0
 Identities = 383/566 (67%), Positives = 436/566 (77%), Gaps = 12/566 (2%)
 Frame = -3

Query: 1662 IREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTIPDVKIERDGTEYVFSDGI 1483
            IR WMG+F  IRNVAKYAAR GQSFSSS ETL V ++E++ IPDV++ RDGT Y+FSDGI
Sbjct: 475  IRRWMGDFSSIRNVAKYAARLGQSFSSSTETLKVAQYEVERIPDVEVVRDGTTYIFSDGI 534

Query: 1482 GKISSEFAHRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKSMSKYRSENT 1303
            GKISS+FA RVA KCG++   PSAFQIRYGGYKGVVAVDPTS  KLSLRKSM KY+S+NT
Sbjct: 535  GKISSDFARRVATKCGIRDGVPSAFQIRYGGYKGVVAVDPTSSMKLSLRKSMLKYQSDNT 594

Query: 1302 SLDVLTWSKFQPGFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDPLRAQEALEV 1123
             LDVL+WSK+QP F+NRQ+ITLLSTLGV D +FEKKQ+EAV QLD IL DPL+AQ+AL++
Sbjct: 595  KLDVLSWSKYQPCFMNRQIITLLSTLGVRDHVFEKKQREAVAQLDDILVDPLKAQDALDL 654

Query: 1122 MSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPNGRSMMGCLD 943
            MSPGEN N+LKEMLKCGYKPD EPFLSMMLQTFR +KLL+LR K RIF P  R MMGC+D
Sbjct: 655  MSPGENTNILKEMLKCGYKPDEEPFLSMMLQTFRLAKLLDLRVKARIFIPQARQMMGCMD 714

Query: 942  ETRTLEYGQVFVQVSCVGHRQFHVNPFFIRNENELDQRSLIIMGKVIVAKNPCLHPGDVR 763
            ET TLEYGQVFVQ S  G    +            +     + GKV VAKNPCLHPGDVR
Sbjct: 715  ETGTLEYGQVFVQFSGTGSSGLY------------EGTKYTVTGKVAVAKNPCLHPGDVR 762

Query: 762  VLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIPRRQVKPMDY 583
            VL+AV+VP LQHMVDCVVFP+KG+RPHPNECSGSDLDGD YFV WDPELIP  Q  PM Y
Sbjct: 763  VLRAVDVPELQHMVDCVVFPRKGRRPHPNECSGSDLDGDRYFVCWDPELIPPNQESPMTY 822

Query: 582  TPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAESNACIELAMLF 403
             PA + LLDH+VTIEEV+EYFTNYIVNDSLGIIANAHTAFADKE   A S+ C+ELA LF
Sbjct: 823  NPAPNTLLDHNVTIEEVEEYFTNYIVNDSLGIIANAHTAFADKERDGALSSPCLELAQLF 882

Query: 402  SIAVDFPKTGVPAEIPSHLHVKEFP------------XXXXXXXXXXXXXXXXXXXXXXX 259
            S+AVDFPKTG+PAEIP HL VKE+P                                   
Sbjct: 883  SVAVDFPKTGIPAEIPPHLRVKEYPDFMDKPDKTTYTSERIIGKLYRQVKDIAPHAASLG 942

Query: 258  XXXXXXXXXSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKTESEILSGSIMK 79
                     SYD+DMEV+GF +YIDEAF +K EYD+KLGN+MDYYGIKTE+EILSG+IMK
Sbjct: 943  SFTMEVAMRSYDTDMEVEGFREYIDEAFEFKTEYDYKLGNMMDYYGIKTEAEILSGAIMK 1002

Query: 78   FSRLFDRRKDADAIGAAVRALKKEAR 1
             S+ FDRRKDADAIGA+VRAL+ EAR
Sbjct: 1003 TSKTFDRRKDADAIGASVRALRNEAR 1028


>ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao]
            gi|590697846|ref|XP_007045553.1| RNA-dependent RNA
            polymerase 1 isoform 1 [Theobroma cacao]
            gi|590697850|ref|XP_007045554.1| RNA-dependent RNA
            polymerase 1 isoform 1 [Theobroma cacao]
            gi|508709487|gb|EOY01384.1| RNA-dependent RNA polymerase
            1 isoform 1 [Theobroma cacao] gi|508709488|gb|EOY01385.1|
            RNA-dependent RNA polymerase 1 isoform 1 [Theobroma
            cacao] gi|508709489|gb|EOY01386.1| RNA-dependent RNA
            polymerase 1 isoform 1 [Theobroma cacao]
          Length = 1109

 Score =  755 bits (1949), Expect = 0.0
 Identities = 389/566 (68%), Positives = 436/566 (77%), Gaps = 12/566 (2%)
 Frame = -3

Query: 1662 IREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTIPDVKIERDGTEYVFSDGI 1483
            IR WMG F  IRNVAKYAAR GQSFSSS ETL+V + EI+ I DV+I+RDG  YVFSDGI
Sbjct: 475  IRTWMGEFSKIRNVAKYAARLGQSFSSSTETLSVAKDEIEIIDDVEIKRDGINYVFSDGI 534

Query: 1482 GKISSEFAHRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKSMSKYRSENT 1303
            GKIS++FA +VA KC +   TPSAFQIR GG+KGVVAVDPTS KKLSLR SMSKY SENT
Sbjct: 535  GKISAKFAKKVAAKCRLNGRTPSAFQIRIGGFKGVVAVDPTSSKKLSLRGSMSKYESENT 594

Query: 1302 SLDVLTWSKFQPGFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDPLRAQEALEV 1123
             LDVL WSK+QP FLNRQLITLLSTLGV D  FE+KQ+E VDQL+ ILTDPL+AQEALE+
Sbjct: 595  KLDVLAWSKYQPCFLNRQLITLLSTLGVPDHAFEEKQREVVDQLNAILTDPLKAQEALEL 654

Query: 1122 MSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPNGRSMMGCLD 943
            MSPGEN N+LKEML CGY+PDAEPFLSMMLQTFRASKLLELR K+RIF  NGRSMMGCLD
Sbjct: 655  MSPGENTNILKEMLLCGYEPDAEPFLSMMLQTFRASKLLELRTKSRIFVANGRSMMGCLD 714

Query: 942  ETRTLEYGQVFVQVSCVGHRQFHVNPFFIRNENELDQRSLIIMGKVIVAKNPCLHPGDVR 763
            ETRTL+YGQVFVQVS  G R                ++  I+ GKV+VAKNPCLHPGDVR
Sbjct: 715  ETRTLDYGQVFVQVS--GSR---------------SEQRFIVQGKVVVAKNPCLHPGDVR 757

Query: 762  VLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIPRRQVKPMDY 583
            VL AVNVP L HMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WDPELIP +Q+ PMDY
Sbjct: 758  VLTAVNVPDLHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPELIPSKQIPPMDY 817

Query: 582  TPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAESNACIELAMLF 403
            +PA +  L+H+VTIEEV+EYFTNYIVNDSLGIIANAHT FAD+EP KA S+ C  LA LF
Sbjct: 818  SPAPTKPLEHEVTIEEVEEYFTNYIVNDSLGIIANAHTVFADREPRKAMSSECKWLAKLF 877

Query: 402  SIAVDFPKTGVPAEIPSHLHVKEFP------------XXXXXXXXXXXXXXXXXXXXXXX 259
            SIAVDFPKTGVPAEIP  L VKE+P                                   
Sbjct: 878  SIAVDFPKTGVPAEIPQELRVKEYPDFMEKPDKPTYQSYNVIGKLFREVKDLAPNECFIR 937

Query: 258  XXXXXXXXXSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKTESEILSGSIMK 79
                      YD DMEVDG+EDY+D+AFY+K  YD+KLGNLM+YYGIKTE+EILSG IMK
Sbjct: 938  SLTRERLERFYDPDMEVDGYEDYVDDAFYHKSNYDYKLGNLMEYYGIKTEAEILSGGIMK 997

Query: 78   FSRLFDRRKDADAIGAAVRALKKEAR 1
             SR F +++DA+AIG AVR+L+KEAR
Sbjct: 998  MSRSFTKQRDAEAIGVAVRSLRKEAR 1023


>ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Solanum
            tuberosum] gi|565401229|ref|XP_006366110.1| PREDICTED:
            RNA-dependent RNA polymerase 1-like isoform X2 [Solanum
            tuberosum]
          Length = 1115

 Score =  754 bits (1946), Expect = 0.0
 Identities = 392/569 (68%), Positives = 441/569 (77%), Gaps = 15/569 (2%)
 Frame = -3

Query: 1662 IREWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTIPDVKIERDGTEYVFSDGI 1483
            IR WMG+F  I+NVAKYAAR GQSF SS ETL+V RHEI+ IPDVK+   GT YVFSDGI
Sbjct: 471  IRTWMGDFSQIKNVAKYAARLGQSFGSSTETLSVLRHEIEVIPDVKVH--GTSYVFSDGI 528

Query: 1482 GKISSEFAHRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKSMSKYRSENT 1303
            GKIS++FA RVA KCG++  TPSAFQIRYGGYKGVVAVDP S  KLSLRKSMSKY S+N 
Sbjct: 529  GKISADFARRVASKCGLQH-TPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNN 587

Query: 1302 SLDVLTWSKFQPGFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDPLRAQEALEV 1123
             LDVL WSK+QP +LNRQL+TLLSTLGV+D + E+KQKEAVDQLD IL D L+AQEALE+
Sbjct: 588  KLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVLEQKQKEAVDQLDAILHDSLKAQEALEL 647

Query: 1122 MSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPNGRSMMGCLD 943
            MSPGEN N+LK ML CGY PDAEPFLSMMLQTFRASKLL+LR K+RIF PNGR MMGCLD
Sbjct: 648  MSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTKSRIFIPNGRLMMGCLD 707

Query: 942  ETRTLEYGQVFVQVSCVGHRQF--HVNPFFIRNENELDQRSLIIMGKVIVAKNPCLHPGD 769
            E+RTLEYGQVFVQ +  GHR+F   ++PF   N +     + I+ G V+VAKNPCLHPGD
Sbjct: 708  ESRTLEYGQVFVQFTGSGHREFSEDLHPF---NNSRSTNCNFILKGNVVVAKNPCLHPGD 764

Query: 768  VRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIPRRQVKPM 589
            +RVL+AV+VPAL HMVDCVVFPQKGKRPHPNECSGSDLDGDIYFV WD ++IP RQV+ M
Sbjct: 765  IRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQAM 824

Query: 588  DYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKAESNACIELAM 409
            +Y PA S+ LDHDVTIEEV+EYFTNYIVNDSLGIIANAH  FAD+EP  A S+ C +LA 
Sbjct: 825  EYPPAPSIQLDHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAE 884

Query: 408  LFSIAVDFPKTGVPAEIPSHLHVKEFP-------------XXXXXXXXXXXXXXXXXXXX 268
            L SIAVDFPKTGVPAEIP  L  KE+P                                 
Sbjct: 885  LCSIAVDFPKTGVPAEIPPQLRPKEYPDFMDKPPDKTTYISERVIGKLYRKVKDKAPQAS 944

Query: 267  XXXXXXXXXXXXSYDSDMEVDGFEDYIDEAFYYKGEYDFKLGNLMDYYGIKTESEILSGS 88
                        SYD+D+EVDGFEDYIDEAF YK EYD KLGNLMDYYGIKTE+EILSG 
Sbjct: 945  STAIFTRDVARRSYDADLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGG 1004

Query: 87   IMKFSRLFDRRKDADAIGAAVRALKKEAR 1
            IMK S+ FDRRKDA+AI  AVRAL+KEAR
Sbjct: 1005 IMKTSKTFDRRKDAEAISIAVRALRKEAR 1033