BLASTX nr result
ID: Akebia23_contig00003030
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Akebia23_contig00003030
(5954 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_224218.1| replicase-associated polyprotein [Citrus sudden... 1118 0.0
gb|ABA54133.1| polyprotein [Citrus sudden death-associated virus] 1112 0.0
gb|ADD13602.1| replicase-associated polyprotein [Oat blue dwarf ... 1084 0.0
ref|YP_003475889.1| replicase-associated polyprotein [Olive late... 1083 0.0
ref|NP_044447.1| replicase-associated polyprotein [Oat blue dwar... 1077 0.0
gb|ACV53023.1| polyprotein [Blackberry virus S] 1076 0.0
ref|NP_115454.1| polyprotein [Maize rayado fino virus] gi|819647... 1075 0.0
ref|YP_004464920.1| polyprotein [Switchgrass mosaic virus] gi|33... 1069 0.0
gb|ACV83739.1| replicase-associated polyprotein [Grapevine virus Q] 1055 0.0
ref|YP_002756536.1| putative 230 kDa polyprotein [Grapevine Syra... 1053 0.0
gb|AFV34757.1| polyprotein [Grapevine Syrah virus 1] 1051 0.0
ref|YP_004300278.1| replication-associated polyprotein [Fig flec... 1012 0.0
ref|NP_044328.1| replicase [Kennedya yellow mosaic virus] gi|548... 997 0.0
sp|P10358.2|POLR_TYMV RecName: Full=RNA replicase polyprotein; A... 991 0.0
gb|AAB92649.1| replicase protein [Turnip yellow mosaic virus] 991 0.0
ref|NP_663297.1| replicase/papain-like protease [Turnip yellow m... 988 0.0
ref|YP_002048673.1| replicase-associated protein RP [Diascia yel... 988 0.0
sp|P20128.1|POLR_TYMVA RecName: Full=RNA replicase polyprotein g... 986 0.0
ref|YP_007517180.1| viral replication protein [Andean potato lat... 982 0.0
ref|NP_041257.1| replicase [Ononis yellow mosaic virus] gi|13055... 971 0.0
>ref|YP_224218.1| replicase-associated polyprotein [Citrus sudden death-associated
virus] gi|59609791|gb|AAW88343.1| replicase-associated
polyprotein [Citrus sudden death-associated virus]
Length = 2188
Score = 1118 bits (2893), Expect = 0.0
Identities = 601/1156 (51%), Positives = 756/1156 (65%), Gaps = 7/1156 (0%)
Frame = -1
Query: 3764 STLILDPSGFGEVSTFAQLYPDDYVLGCAEFFCRKRHHGVSTAPFPTMPCLLDAVGSCLG 3585
S L D S G ++ L+P Y+ G +F R R +G + P+P M CLL ++
Sbjct: 854 SPLARDSSASGPPGMYSDLFPAPYLPGTGQFIFRSRANGRANIPYPDMDCLLLSIEQATR 913
Query: 3584 VTPAELWSTLCHHLPDSLLQNPQITSCGLSTDHLTALSHFYQFKAFVTSDQEPIPHPYGV 3405
+ LW TLC PDSLL I GLSTDH L+H Y + + I G+
Sbjct: 914 LPKEALWDTLCATCPDSLLDPDTIRRVGLSTDHFAILAHHYSLRCRFHTAHGVIE--LGM 971
Query: 3404 DSAPTTIRFSHTTGNPGHFFITSDPGAPPPPKXXXXXXXXXXXXXXLTTFRLNGELLPFQ 3225
A ++ HT GNPGHF + A P F ++G LLP +
Sbjct: 972 ADATSSFDIDHTAGNPGHFSLRQS--ATP----RLNGGIAQDLAVAALRFNIDGTLLPIR 1025
Query: 3224 TVHNYRANVKRAKNLISNMKNGFDGVMATVDPQHPNSAKEKFVTTDGILDIAKSRSIKLI 3045
+VH Y KRAKNL SNMKNGFDG+MA + P N ++EK + D LDIA RS++LI
Sbjct: 1026 SVHVYSTWPKRAKNLSSNMKNGFDGIMANIHPTKTNESREKILALDSQLDIAVRRSVRLI 1085
Query: 3044 HIAGFPGCGKSYPIQRLLLTAPRARNFRISVPTAELRHEWKASMDLEPKNNWRIGTWEXX 2865
HIAGFPGCGKS+PI RLL T P RNF+++VPT ELR EWK L WRIGTWE
Sbjct: 1086 HIAGFPGCGKSFPISRLLRT-PTFRNFKVAVPTVELRAEWKTITGLPASEAWRIGTWESS 1144
Query: 2864 XXXXXXXLVVDEIYKMPRGYLDLAILMDPHLEMVIVLGDPLQGEYHSTHPQSSNHKLSSE 2685
LV+DEIYKMPRGY+DLAI DP +EMVI LGDPLQGEYHSTHP S+N +L SE
Sbjct: 1145 LLKSARVLVIDEIYKMPRGYIDLAIHSDPTIEMVIALGDPLQGEYHSTHPSSTNSRLLSE 1204
Query: 2684 INHLRPYLDFYCAWTRRCPKLIADFFGVPTTSQEPGFCRPVNHLPMNCPILTNSHSAALT 2505
HL YLDFYC W+ R P+ +A FF V TTS++PGFCR LP N IL NS +A T
Sbjct: 1205 PQHLSMYLDFYCLWSHRVPQNVAAFFHVKTTSKQPGFCRYQRELP-NSRILANSQNAGHT 1263
Query: 2504 LTEAHSRACTISASQGSTYSSPVVIHLDRHSSQLSNSMALVALTRSTKGVLFSGDQSILQ 2325
L + A TI++SQGSTY + IHLDR+SS LS + ++VALTRS GV+F+GD + L
Sbjct: 1264 LQQCGYAAVTIASSQGSTYENAACIHLDRNSSLLSPAHSMVALTRSKVGVIFTGDPAQLS 1323
Query: 2324 PGPHSAKLFSQLTQFQSSHSPDDRYPIQTHFIEQLRGVTLISTPLKSR--KLVGACPSEV 2151
P S ++FS+ ++ P+ F + T+++ PLK+R +L GA
Sbjct: 1324 NAPSSNRMFSEFFSGRTR-------PLHDWFHNEFPKATVLTEPLKTRGPRLTGAASP-- 1374
Query: 2150 KHSSTVRDFTHHAIRGSTVRDPSYQPSLAHVVRHTSPAIYHSELNRLHPDFKGDAVRSAV 1971
+S V P Q S +PA L PDF+GD + SA
Sbjct: 1375 -YSKAV---------------PIRQAS--------TPA--------LKPDFQGDVIISAP 1402
Query: 1970 IVCGDGIDHLPRVSPHFIAETRLPYHSDMPSAMPSQCSL---SPPTFSAPVFEPVYPGED 1800
IV G G + P+VS HF+ ETR P H D+PSA+P + + PT S P EPVYPGE
Sbjct: 1403 IVLGSGELNAPQVSSHFLPETRRPLHWDIPSAIPESATRPDSTEPTTSHP--EPVYPGET 1460
Query: 1799 FETLASTFLPAHDPHLREIIFKGERSAQFPYLNQPFDLFLQPQTLIAAQHHGQKDSTLLP 1620
FE LA+ FLPAHDP REI ++G+ S QFP++++ F L QP +L+AA H ++D TLLP
Sbjct: 1461 FENLAAHFLPAHDPTDREIYWQGQLSNQFPHMDKEFHLAAQPMSLLAAVHQEKQDPTLLP 1520
Query: 1619 ASIPKRLRFRRNSTPYVISPKDQLLGELLFISLCKAYNRHPSSVEPFDEALFADCINLNE 1440
ASI KRLRFR + PY I+PKD++LG+LLF LC+AY+R P E FD LFA+CINLNE
Sbjct: 1521 ASIQKRLRFRPSDKPYQITPKDEILGQLLFEGLCRAYHRSPFHTEAFDPVLFAECINLNE 1580
Query: 1439 FAQLSSKTQTTIMANASRSDPDWRWSAVRIFSKSQHKTNEASIFGSWKACQTLALMHDAV 1260
FAQLSSKTQ TIM NA RSDPDWRWSAVRIFSK+QHK NE SIF SWKACQTLALMHDAV
Sbjct: 1581 FAQLSSKTQATIMGNARRSDPDWRWSAVRIFSKTQHKVNEGSIFRSWKACQTLALMHDAV 1640
Query: 1259 VLLLGPVKKYQRLFDNRDRPANIYVHASHTPFQMSDWCRENLSSCEHVANDYTAFDQSQH 1080
VL+LGPVKKYQR+FD RDRP ++Y+HA +TP QMS+WC+++L++ +ANDYTAFDQSQH
Sbjct: 1641 VLILGPVKKYQRVFDQRDRPRHLYIHAGNTPSQMSNWCQQHLTTAVKLANDYTAFDQSQH 1700
Query: 1079 GEAVVLEIKKMRRLSIPEPLIQLHAYLKTNVTTQFGPLTCMRLTGEPGTYDDNTDYNLAV 900
GEAVVLE KKM RLSIP+ LI LH +LKT+V+TQFGPLTCMRLTGEPGTYDDN+DYNLAV
Sbjct: 1701 GEAVVLERKKMERLSIPQALIDLHIHLKTHVSTQFGPLTCMRLTGEPGTYDDNSDYNLAV 1760
Query: 899 IHSQYLMASIPHMVSGDDSLIDRQPLPNPLWITIGPMLHLRFKLEVTRYPLFCGYLVGPS 720
++ +Y+ A+ P MVSGDDSL+DR+P P W+ + P+L LRFK E RY FCGY
Sbjct: 1761 VNCEYMAANTPTMVSGDDSLLDREPPTRPEWVILQPLLSLRFKKERGRYATFCGYYASHV 1820
Query: 719 GAVRSPITLFAKSLMALDDGSLDDKLASYLTEFSVGHSLGQEMWNLIPVEQVHYQAALFD 540
G VRSP+ LFAK +A+DDGS+ DK+ASYL+EF++GHSLG +W +P+E V +Q+A FD
Sbjct: 1821 GCVRSPVALFAKLAIAVDDGSISDKMASYLSEFALGHSLGDHLWEALPLEAVPFQSACFD 1880
Query: 539 FFCRKASREQKLVLKIGEVPDTIISTILSSARAIARPLYAYLSSSARKLLLKGSKTYR-- 366
FFCR+A R KL L +GEVP++II+ I SS + + +Y LSS+AR +L+ S+ R
Sbjct: 1881 FFCRRAPRHLKLSLMLGEVPESIIARIGSSLKWASHAIYTTLSSAARVAILRSSRNSRSM 1940
Query: 365 PFDTEESLQFEGVLQH 318
P D + +L +LQH
Sbjct: 1941 PDDPDTTLLQGELLQH 1956
Score = 459 bits (1180), Expect = e-126
Identities = 252/553 (45%), Positives = 319/553 (57%), Gaps = 4/553 (0%)
Frame = -1
Query: 5945 SLSNTIHRDTVTSPLVEAVADPLRDSLEKYPYAVSPSLTSFLSKRGINISGYGAKTHPHP 5766
SL+ T HRDT+ +PL+EA+A+P R SL YP+ + +L FL+ GI +G G K HPHP
Sbjct: 97 SLAPTTHRDTIATPLMEALAEPYRQSLSTYPWHIPTNLQPFLTSCGITTAGQGFKAHPHP 156
Query: 5765 AHKNIENYILQDVWPNLIRNQSSVLFMKPSKFRKLEQKDSNFHELINYRLTPQDTTRYPS 5586
HK IE +L +VWP+ S V+FMKPSKF KL+ K NF +L NYR+T +DTTRYPS
Sbjct: 157 VHKTIETNLLTNVWPHYATTPSGVMFMKPSKFEKLKIKQPNFSKLYNYRITAKDTTRYPS 216
Query: 5585 SSTTLPAHSTVFMHDALMYYTPGDIADLFLSAPHLTQLYATLVVPPESSFTDTSFFPELY 5406
+S LP T FMHDALMYY+PG I DLFLS P L +LYA+LVVPPES FT S FP+LY
Sbjct: 217 TSPDLPTEDTCFMHDALMYYSPGQICDLFLSRPSLQKLYASLVVPPESDFTTISLFPDLY 276
Query: 5405 NFHFHDTDLVYELEGNPSHHYIQPKSALDWLRTSTIRCSDLTLSISILESIGPVHHLLIQ 5226
+ L+YELE NP+H+YIQP+SA+DWL+T+TIRC DLTL+IS L+S GPVH LLIQ
Sbjct: 277 RYRIEKDQLIYELEQNPAHNYIQPRSAIDWLKTTTIRCQDLTLTISRLDSWGPVHSLLIQ 336
Query: 5225 RGLAPKHRENTTRDFDTPDCFLLPAPTSLSQNVRDRLVPLAAYHSLRAYVMAVRTLRTTD 5046
RG P H E + F P LLP P SLSQ+VRDRLVP Y +L YV AVRTLR TD
Sbjct: 337 RGKPPIHLEEDSISFRAPKAVLLPEPASLSQSVRDRLVPADVYQALFIYVRAVRTLRVTD 396
Query: 5045 PAGFVRTQSTKPEFAWVTAEAWDSLQNFALLTCNQRPAVSYLTFASSFARIKHWXXXXXX 4866
PAGFVRTQ +KPE++WVT+ AWD+L +FAL T RP +Y F S+ AR+ HW
Sbjct: 397 PAGFVRTQISKPEYSWVTSSAWDNLAHFALATAPHRPHTTYFLFNSTAARVAHW------ 450
Query: 4865 XXXXXXXXXXXAVSFTTVKVAHYCSTRQIDSLILFGKQIVRPSCPLNSPFSLHQYFSRTA 4686
+S T A T + +V S R
Sbjct: 451 ----FRTHTLAPLSGATAAAASLLMTASWGFRAMISSHLVSLS-----------ICKRWL 495
Query: 4685 QLPPSL--STQLPRFELVTSPRIITKW--SPCLARFLLSTPFFRTLTTQLNFLSKKCFFA 4518
+ PP L + P F+L P++ P L F L L + L+ A
Sbjct: 496 KAPPHLLWPEKAPWFQLTLRPKVTGPLIDLPILRPFRLFPSTCAKLGAKHPALATLLPAA 555
Query: 4517 KGFPHSRKLXXXXXXXXXILWAYRRFMGPDAPQAMFDQYNGYFNPKPWKLRIAQGPTKCS 4338
K+ L+ +R+F+GPD+PQ M D Y+ F+P+PW L + + C
Sbjct: 556 PRPTWPLKVGLALAAVPVCLFLWRKFIGPDSPQDMHDSYHAMFHPQPWGLTLTRKAICCD 615
Query: 4337 RGQFLPFCPRPHS 4299
R FLP P S
Sbjct: 616 RAPFLPIPVVPSS 628
>gb|ABA54133.1| polyprotein [Citrus sudden death-associated virus]
Length = 2189
Score = 1112 bits (2877), Expect = 0.0
Identities = 598/1158 (51%), Positives = 757/1158 (65%), Gaps = 9/1158 (0%)
Frame = -1
Query: 3764 STLILDPSGFGEVSTFAQLYPDDYVLGCAEFFCRKRHHGVSTAPFPTMPCLLDAVGSCLG 3585
S + D S G ++ L+P Y+ G +F R R +G + P+P M CLL ++
Sbjct: 854 SPVARDSSATGPPGMYSDLFPAPYLPGTGQFIFRSRANGRANIPYPDMDCLLLSIEQATR 913
Query: 3584 VTPAELWSTLCHHLPDSLLQNPQITSCGLSTDHLTALSHFYQFKAFVTSDQEPIPHPYGV 3405
+ LW TLC PDSLL I GLSTDH +H Y + + I G+
Sbjct: 914 LPKEALWDTLCATCPDSLLDPDTIRRVGLSTDHFVIFAHHYSLRCRFHTAHGVIE--LGM 971
Query: 3404 DSAPTTIRFSHTTGNPGHFFITSDPGAPPPPKXXXXXXXXXXXXXXLTTFRLNGELLPFQ 3225
A ++ HT GNPGHF + A P F ++G LLP +
Sbjct: 972 ADATSSFDIDHTAGNPGHFSLRQS--ATP----RLNGGIAQDLAVAALRFNIDGTLLPIR 1025
Query: 3224 TVHNYRANVKRAKNLISNMKNGFDGVMATVDPQHPNSAKEKFVTTDGILDIAKSRSIKLI 3045
+VH Y KRAKNL SNMKNGFDG+MA + P N ++EK + D LDIA RS++LI
Sbjct: 1026 SVHVYSTWPKRAKNLSSNMKNGFDGIMANIHPTKTNESREKILALDSQLDIAVRRSVRLI 1085
Query: 3044 HIAGFPGCGKSYPIQRLLLTAPRARNFRISVPTAELRHEWKASMDLEPKNNWRIGTWEXX 2865
HIAGFPGCGKS+PI RLL T P RNF+++VPT ELR EWKA + L WRIGTWE
Sbjct: 1086 HIAGFPGCGKSFPISRLLRT-PTFRNFKVAVPTVELRAEWKAIIGLPTSEAWRIGTWESS 1144
Query: 2864 XXXXXXXLVVDEIYKMPRGYLDLAILMDPHLEMVIVLGDPLQGEYHSTHPQSSNHKLSSE 2685
LV+DEIYKMPRGY+DLAI DP +EMVI LGDPLQGEYHSTHP S+N +L +E
Sbjct: 1145 LLKSARVLVIDEIYKMPRGYIDLAIHSDPTIEMVIALGDPLQGEYHSTHPSSTNSRLLAE 1204
Query: 2684 INHLRPYLDFYCAWTRRCPKLIADFFGVPTTSQEPGFCRPVNHLPMNCPILTNSHSAALT 2505
+HL YLD+YC W+ R P+ +A FF + TTS++PGFCR LP N IL NS +A T
Sbjct: 1205 PHHLSMYLDYYCMWSHRVPQNVAAFFHIKTTSKQPGFCRYQRELP-NSRILANSQNAGHT 1263
Query: 2504 LTEAHSRACTISASQGSTYSSPVVIHLDRHSSQLSNSMALVALTRSTKGVLFSGDQSILQ 2325
L + A TI++SQGSTY + IHLDR+SS LS + ++VALTRS GV+F+GD + L
Sbjct: 1264 LQQCGYAAVTIASSQGSTYDNAACIHLDRNSSLLSPAHSMVALTRSKVGVIFTGDPAQLS 1323
Query: 2324 PGPHSAKLFSQLTQFQSSHSPDDRYPIQTHFIEQLRGVTLISTPLKSR--KLVGACPSEV 2151
P S ++FS+ ++ P+ F + T+++ PLK+R +L GA
Sbjct: 1324 NAPSSNRMFSEFFSGRTR-------PLHDWFHNEFPKATVLTEPLKTRGPRLTGAASPYS 1376
Query: 2150 KHSSTVRDFTHHAIRGSTVRDPSYQPSLAHVVRHTSPAIYHSELNRLHPDFKGDAVRS-- 1977
K + +D T PA L PDF+GD VRS
Sbjct: 1377 KVFPSGKDST--------------------------PA--------LKPDFQGD-VRSSR 1401
Query: 1976 AVIVCGDGIDHLPRVSPHFIAETRLPYHSDMPSAMPSQCS---LSPPTFSAPVFEPVYPG 1806
A IV G G + P+VS HF+ ETR P H D+PSA+P + + PT P EPVYPG
Sbjct: 1402 APIVLGSGELNAPQVSTHFLPETRRPLHWDIPSAIPESATRPDSTEPTTCHP--EPVYPG 1459
Query: 1805 EDFETLASTFLPAHDPHLREIIFKGERSAQFPYLNQPFDLFLQPQTLIAAQHHGQKDSTL 1626
E FE LA+ FLPAHDP REI ++G+ S QFP++++ F L QP +L+AA H ++D TL
Sbjct: 1460 ETFENLAAHFLPAHDPTDREIYWQGQLSNQFPHMDKEFHLAAQPMSLLAAIHQEKQDPTL 1519
Query: 1625 LPASIPKRLRFRRNSTPYVISPKDQLLGELLFISLCKAYNRHPSSVEPFDEALFADCINL 1446
LPASI KRLRFR + PY I+PKD++LG+LLF LC+AY+R P E FD LFA+CINL
Sbjct: 1520 LPASIQKRLRFRPSDRPYQITPKDEILGQLLFEGLCRAYHRSPFHTEAFDPVLFAECINL 1579
Query: 1445 NEFAQLSSKTQTTIMANASRSDPDWRWSAVRIFSKSQHKTNEASIFGSWKACQTLALMHD 1266
NEFAQLSSKTQ TIM NA RSDPDWRWSAVRIFSK+QHK NE SIFGSWKACQTLALMHD
Sbjct: 1580 NEFAQLSSKTQATIMGNARRSDPDWRWSAVRIFSKTQHKVNEGSIFGSWKACQTLALMHD 1639
Query: 1265 AVVLLLGPVKKYQRLFDNRDRPANIYVHASHTPFQMSDWCRENLSSCEHVANDYTAFDQS 1086
AVVL+LGPVKKYQR+FD RDRP ++Y+HA +TP QMS+WC+++L++ +ANDYTAFDQS
Sbjct: 1640 AVVLILGPVKKYQRVFDQRDRPRHLYIHAGNTPSQMSNWCQQHLTTAVKLANDYTAFDQS 1699
Query: 1085 QHGEAVVLEIKKMRRLSIPEPLIQLHAYLKTNVTTQFGPLTCMRLTGEPGTYDDNTDYNL 906
QHGEAVVLE KKM RLSIP+ LI LH +LKT+V+TQFGPLTCMRLTGEPGTYDDN+DYNL
Sbjct: 1700 QHGEAVVLERKKMERLSIPQALIDLHIHLKTHVSTQFGPLTCMRLTGEPGTYDDNSDYNL 1759
Query: 905 AVIHSQYLMASIPHMVSGDDSLIDRQPLPNPLWITIGPMLHLRFKLEVTRYPLFCGYLVG 726
AVI+ +Y+ A+ P MVSGDDSL+DR+P P W+ + P+L LRFK E RY FCGY
Sbjct: 1760 AVINCEYMAANTPTMVSGDDSLLDREPPTRPEWVILQPLLSLRFKKERGRYATFCGYYAS 1819
Query: 725 PSGAVRSPITLFAKSLMALDDGSLDDKLASYLTEFSVGHSLGQEMWNLIPVEQVHYQAAL 546
G VRSP+ LFAK +A+DDGS+ DK+ASYL+EF++GHSLG +W +P+E V +Q+A
Sbjct: 1820 HVGCVRSPVALFAKLAIAVDDGSISDKMASYLSEFALGHSLGDHLWEALPLEAVPFQSAC 1879
Query: 545 FDFFCRKASREQKLVLKIGEVPDTIISTILSSARAIARPLYAYLSSSARKLLLKGSKTYR 366
FDFFCR+A R KL L +GEVP++II+ I SS + + +Y LSS+AR +L+ S+ R
Sbjct: 1880 FDFFCRRAPRHLKLSLMLGEVPESIIARIGSSLKWASHAIYTTLSSAARVAILRSSRNSR 1939
Query: 365 --PFDTEESLQFEGVLQH 318
P D + +L +LQH
Sbjct: 1940 SMPDDPDTTLLQGELLQH 1957
Score = 451 bits (1159), Expect = e-123
Identities = 262/618 (42%), Positives = 336/618 (54%), Gaps = 5/618 (0%)
Frame = -1
Query: 5945 SLSNTIHRDTVTSPLVEAVADPLRDSLEKYPYAVSPSLTSFLSKRGINISGYGAKTHPHP 5766
SL+ T HRDT+ +PL+EA+A+P R SL YP+ + +L FL+ GI +G G K HPHP
Sbjct: 97 SLAPTTHRDTIATPLMEALAEPYRQSLSTYPWHIPTNLQPFLTSCGITTAGQGFKAHPHP 156
Query: 5765 AHKNIENYILQDVWPNLIRNQSSVLFMKPSKFRKLEQKDSNFHELINYRLTPQDTTRYPS 5586
HK IE +L +VW + S V+FMKPSKF KL K NF +L NYR+T +D+TRYPS
Sbjct: 157 VHKTIETNLLSNVWSHYATTPSGVMFMKPSKFEKLRIKQPNFSKLYNYRITAKDSTRYPS 216
Query: 5585 SSTTLPAHSTVFMHDALMYYTPGDIADLFLSAPHLTQLYATLVVPPESSFTDTSFFPELY 5406
+S LP T FMHDALMYY+PG I DLF+S P L +LYA+LVVPPES FT S FP+LY
Sbjct: 217 TSPDLPTEDTCFMHDALMYYSPGQICDLFISRPSLQKLYASLVVPPESDFTTISLFPDLY 276
Query: 5405 NFHFHDTDLVYELEGNPSHHYIQPKSALDWLRTSTIRCSDLTLSISILESIGPVHHLLIQ 5226
+ LVYELE NP+H+YIQP+SA+DWL+T+TIRC DLTL+IS L+S GPVH LLIQ
Sbjct: 277 RYRIEKDQLVYELEQNPAHNYIQPRSAIDWLKTTTIRCQDLTLTISRLDSWGPVHSLLIQ 336
Query: 5225 RGLAPKHRENTTRDFDTPDCFLLPAPTSLSQNVRDRLVPLAAYHSLRAYVMAVRTLRTTD 5046
RG P H E + F TP LLP P SLSQ VRDRLVP Y +L YV AVRTLR TD
Sbjct: 337 RGRPPIHLEEDSISFRTPKAVLLPEPASLSQGVRDRLVPADVYQALFIYVRAVRTLRVTD 396
Query: 5045 PAGFVRTQSTKPEFAWVTAEAWDSLQNFALLTCNQRPAVSYLTFASSFARIKHWXXXXXX 4866
PAGFVRTQ +KPE++WVT+ WD+ AL T RP +Y F S+ AR+ HW
Sbjct: 397 PAGFVRTQISKPEYSWVTSFRWDNFPPLALATAPHRPHTTYFLFNSTAARVSHW------ 450
Query: 4865 XXXXXXXXXXXAVSFTTVKVAHYCSTRQIDSLILFGKQIVRPSCPLNSPFSLHQYFSRTA 4686
+S T A T L +V S R
Sbjct: 451 ----FRTHTLALLSGATAAAASLLMTASWGFRALISSHLVSLS-----------ICKRWL 495
Query: 4685 QLPPSL--STQLPRFELVTSPRIITKW--SPCLARFLLSTPFFRTLTTQLNFLSKKCFFA 4518
+ PP L + P F+L P++ P L F L L + L+ A
Sbjct: 496 RAPPHLLWPEKAPWFQLTLRPKVTGPMIDLPILRPFRLFPSTCAKLGAKYPALATLLPAA 555
Query: 4517 KGFPHSRKLXXXXXXXXXILWAYRRFMGPDAPQAMFDQYNGYFNPKPWKLRIAQGPTKCS 4338
K+ L+ +R+F+GPD+PQ M D Y+ F+P+PW L +A+ C
Sbjct: 556 PRPLWPLKVGLALATVPVCLFLWRKFIGPDSPQDMHDSYHAMFHPQPWGLSLARKAICCD 615
Query: 4337 RGQFLPFCPRPHSLIQXXXXXXDIFLINAVSIDLQTEVP-EHIRSLALSKPLHYEPSDDI 4161
R FLP P S + L + ++ +VP E + + S S
Sbjct: 616 RAPFLPIPLVPSSDFKAPPTPATPLLTSIPIKGVEPQVPGEGVPPQSASSTGPASDSRCA 675
Query: 4160 PDPAPVLIPTKVANKITA 4107
P PA P + A ++A
Sbjct: 676 PQPASSTGPDQPAQDMSA 693
>gb|ADD13602.1| replicase-associated polyprotein [Oat blue dwarf virus]
Length = 2067
Score = 1084 bits (2803), Expect = 0.0
Identities = 598/1169 (51%), Positives = 747/1169 (63%), Gaps = 11/1169 (0%)
Frame = -1
Query: 3764 STLILDPSGFGEVSTFAQLYPDDYVLGCAEFFCRKRHHGVSTAPFPTMPCLLDAVGSCLG 3585
S L DPS G V + L+P +Y F R R G S P+P M CLL A
Sbjct: 690 SPLARDPSASGPVRFYRDLFPANYAGDSGTFDFRARASGRSPTPYPAMDCLLVATEQATR 749
Query: 3584 VTPAELWSTLCHHLPDSLLQNPQITSCGLSTDHLTALSHFYQFKAFVTSDQEPIPHPYGV 3405
++ LW L PDS L I GLSTDH L+H + A S I G+
Sbjct: 750 ISREALWDCLTATCPDSFLDPKSIAQHGLSTDHFVILAHRFSLCANFHSAAHVIQ--LGM 807
Query: 3404 DSAPTTIRFSHTTGN---PGHFFITSDPGAPPPPKXXXXXXXXXXXXXXLTTFRLNGELL 3234
A +T +HT G+ PGHF + G P F ++G+LL
Sbjct: 808 ADATSTFMINHTAGSAGLPGHFSLRL--GDQP---RALNGGLAQDLAVAALRFNISGDLL 862
Query: 3233 PFQTVHNYRANVKRAKNLISNMKNGFDGVMATVDPQHPNSAKEKFVTTDGILDIAKSRSI 3054
P ++VH YR+ KRAKNL+SNMKNGFDGVMA+++P P+ A+EK V DG+LDIA+ RS+
Sbjct: 863 PTRSVHTYRSWPKRAKNLVSNMKNGFDGVMASINPIRPSDAREKIVALDGLLDIAQPRSV 922
Query: 3053 KLIHIAGFPGCGKSYPIQRLLLTAPRARNFRISVPTAELRHEWKASMDLEPKNNWRIGTW 2874
+LIHIAGFPGCGK++PI +LL TA R+F+++VPT ELR EWK M L P WR GTW
Sbjct: 923 RLIHIAGFPGCGKTHPITKLLHTAA-FRDFKLAVPTTELRSEWKELMKLSPSQAWRFGTW 981
Query: 2873 EXXXXXXXXXLVVDEIYKMPRGYLDLAILMDPHLEMVIVLGDPLQGEYHSTHPQSSNHKL 2694
E LV+DEIYK+PRGYLDLAI D +E VI LGDPLQGEYHSTHP SSN +L
Sbjct: 982 ESSLLKSARILVIDEIYKLPRGYLDLAIHSDSSIEFVIALGDPLQGEYHSTHPSSSNSRL 1041
Query: 2693 SSEINHLRPYLDFYCAWTRRCPKLIADFFGVPTTSQEPGFCRPVNHLPMNCPILTNSHSA 2514
E++HL PYLD+YC W+ R P+ +A FF V + + GF R P +LTNS ++
Sbjct: 1042 IPEVSHLAPYLDYYCLWSYRVPQDVATFFQVQSHNPALGFARLSKQFPTTGRVLTNSQNS 1101
Query: 2513 ALTLTEAHSRACTISASQGSTYSSPVVIHLDRHSSQLSNSMALVALTRSTKGVLFSGDQS 2334
LT+T+ A TI++SQGSTYS IHLDR+SS LS S +LVALTRS GV FSGD +
Sbjct: 1102 MLTMTQCGYSAVTIASSQGSTYSGATHIHLDRNSSLLSPSNSLVALTRSRTGVFFSGDPA 1161
Query: 2333 ILQPGPHSAKLFSQLTQFQSSHSPDDRYPIQTHFIEQLRGVTLISTPLKSR--KLVGA-C 2163
+L GP+S +FS Q +S H I+ F TL+ +PL+ R +L GA
Sbjct: 1162 LLNGGPNSNLMFSAFFQGKSRH-------IRDWFPTLFPTATLLLSPLRQRHNRLTGALA 1214
Query: 2162 PSEVKHSSTVRDFTHHAIRGSTVRDPSYQP-SLAHVVRHTSPAIYHSELNRLHPDFKGDA 1986
P E H + D S + P+ P S A VR A + P + D
Sbjct: 1215 PVEPSHL-LLPDLP------SLLPLPASGPYSRAFPVRSRFAAA-------VKPFDRSDV 1260
Query: 1985 VRSAVIVCGDGIDHLPRVSPHFIAETRLPYHSDMPSAMPSQCSLSPPTFSAP---VFEPV 1815
+ A I GDG + PR+ F+ ETR P H D+PS P + PP+ AP FEPV
Sbjct: 1261 LSWAPIAVGDGETNAPRIDTSFLPETRRPLHFDLPSFRPQ--APPPPSDPAPSGTAFEPV 1318
Query: 1814 YPGEDFETLASTFLPAHDPHLREIIFKGERSAQFPYLNQPFDLFLQPQTLIAAQHHGQKD 1635
YPGE FE L + FLPAHDP REI ++G+ S QFP++++ + L QP TL+A H + D
Sbjct: 1319 YPGETFENLVAHFLPAHDPTDREIHWRGQLSNQFPHIDKEYHLAAQPMTLLAPIHDSKHD 1378
Query: 1634 STLLPASIPKRLRFRRNSTPYVISPKDQLLGELLFISLCKAYNRHPSSVEPFDEALFADC 1455
TLL ASI KRLRFR +++PY I+P+D+LLG+LL+ SLC+AY+R P+S PFDEALF +C
Sbjct: 1379 PTLLAASIQKRLRFRPSASPYRITPRDELLGQLLYESLCRAYHRSPTSTHPFDEALFVEC 1438
Query: 1454 INLNEFAQLSSKTQTTIMANASRSDPDWRWSAVRIFSKSQHKTNEASIFGSWKACQTLAL 1275
I+LNEFAQL+SKTQ IM NA RSDPDWRWSAVRIFSK+QHK NE SIFG+WKACQTLAL
Sbjct: 1439 IDLNEFAQLTSKTQAVIMGNARRSDPDWRWSAVRIFSKTQHKVNEGSIFGAWKACQTLAL 1498
Query: 1274 MHDAVVLLLGPVKKYQRLFDNRDRPANIYVHASHTPFQMSDWCRENLSSCEHVANDYTAF 1095
MHDAVVLLLGPVKKYQR+FD RDRPA++Y+HA TP MS WC+ +L+ +ANDYTAF
Sbjct: 1499 MHDAVVLLLGPVKKYQRVFDARDRPAHLYIHAGQTPSSMSLWCQTHLTPAVKLANDYTAF 1558
Query: 1094 DQSQHGEAVVLEIKKMRRLSIPEPLIQLHAYLKTNVTTQFGPLTCMRLTGEPGTYDDNTD 915
DQSQHGEAVVLE KKM RLSIP+ LI LH YLKT+V TQFGPLTCMRLTGEPGTYDDNTD
Sbjct: 1559 DQSQHGEAVVLERKKMERLSIPDHLISLHVYLKTHVETQFGPLTCMRLTGEPGTYDDNTD 1618
Query: 914 YNLAVIHSQYLMASIPHMVSGDDSLIDRQPLPNPLWITIGPMLHLRFKLEVTRYPLFCGY 735
YNLAVI+ +Y A +P MVSGDDSL+D +P P W+ I P+L LRFK E Y FCGY
Sbjct: 1619 YNLAVINLEYAAAHVPTMVSGDDSLLDFEPPRRPEWVAIEPLLALRFKKERGLYATFCGY 1678
Query: 734 LVGPSGAVRSPITLFAKSLMALDDGSLDDKLASYLTEFSVGHSLGQEMWNLIPVEQVHYQ 555
G VRSPI LFAK +A+DD S+ DKLA+YL EF+VGHSLG +W+ +P+ V +Q
Sbjct: 1679 YASRVGCVRSPIALFAKLAIAVDDSSISDKLAAYLMEFAVGHSLGDSLWSALPLSAVPFQ 1738
Query: 554 AALFDFFCRKASREQKLVLKIGEVPDTIISTILSSARAIARPLYAYLSSSARKLLLKGSK 375
+A FDFFCR+A R+ KL L +GEVP+TII LS ++ +Y+ L S R +L S+
Sbjct: 1739 SACFDFFCRRAPRDLKLALHLGEVPETIIQR-LSHLSWLSHAVYSLLPSRLRLAILHSSR 1797
Query: 374 TYRPFDTEESL-QFEGVLQHAVSIATPPP 291
+R + ++ +G L H P P
Sbjct: 1798 QHRSLPEDPAVSSLQGELLHTFHAPMPSP 1826
Score = 468 bits (1204), Expect = e-128
Identities = 271/638 (42%), Positives = 356/638 (55%), Gaps = 14/638 (2%)
Frame = -1
Query: 5954 LFESLSNTIHRDTVTSPLVEAVADPLRDSLEKYPYAVSPSLTSFLSKRGINISGYGAKTH 5775
+ E+LS+TIHRDT+ +PL+E +A P RDSL +P+AV S FL + GI ++G+G K H
Sbjct: 27 VIETLSSTIHRDTIAAPLMETLASPYRDSLRDFPWAVPASALPFLQECGITVAGHGFKAH 86
Query: 5774 PHPAHKNIENYILQDVWPNLIRNQSSVLFMKPSKFRKLEQKDSNFHELINYRLTPQDTTR 5595
PHP HK IE ++L VWP+ + SSVLFMKPSKF KL++ ++NF L NYRLT +DT R
Sbjct: 87 PHPVHKTIETHLLHKVWPHYAQVPSSVLFMKPSKFAKLQRGNANFSALHNYRLTAKDTPR 146
Query: 5594 YPSSSTTLPAHSTVFMHDALMYYTPGDIADLFLSAPHLTQLYATLVVPPESSFTDTSFFP 5415
YP++ST+LP T FMHDALMYYTP I DLFLS P L +LYA+LVVPPESSFT S P
Sbjct: 147 YPNTSTSLPDTETAFMHDALMYYTPAQIVDLFLSCPKLEKLYASLVVPPESSFTSISLHP 206
Query: 5414 ELYNFHFHDTDLVYELEGNPSHHYIQPKSALDWLRTSTIRCSDLTLSISILESIGPVHHL 5235
+LY F F L+YELEGNP+H+Y QP+SALDWLRT+TIR ++L++S L+S GP H L
Sbjct: 207 DLYRFRFDGDRLIYELEGNPAHNYTQPRSALDWLRTTTIRGPGVSLTVSRLDSWGPCHSL 266
Query: 5234 LIQRGLAPKHRENTTRDFDTPDCFLLPAPTSLSQNVRDRLVPLAAYHSLRAYVMAVRTLR 5055
LIQRG+ P H E+ + F P +P P+SL Q++R RLVP Y++L YV AVRTLR
Sbjct: 267 LIQRGIPPMHAEHDSISFRGPRAVAIPEPSSLHQDLRHRLVPEDVYNALFLYVRAVRTLR 326
Query: 5054 TTDPAGFVRTQSTKPEFAWVTAEAWDSLQNFALLTCNQRPAVSYLTFASSFARIKHWXXX 4875
TDPAGFVRTQ +K E+AWVT+ AWD+L +FALLT RP S+ F+S+F R++HW
Sbjct: 327 VTDPAGFVRTQCSKSEYAWVTSSAWDNLAHFALLTAPHRPRTSFYLFSSTFQRLEHWVRH 386
Query: 4874 XXXXXXXXXXXXXXAVSFTTVKVAHYCSTRQIDSLILFGKQIVRPSCPLN--SPFSLHQY 4701
S + S I L L + ++ P SP S
Sbjct: 387 HTFLLAGLTTAFALPPSAWLANLVARTSASHIQGLALARRWLITPPHLFRPPSPPSFALL 446
Query: 4700 FSRTAQLPPSLSTQLPRFELVTS--PRIITKWSPCLARFLLSTPFFRTLTTQLNFLSKKC 4527
R + P L FE S P++ ++ P LAR L P + L
Sbjct: 447 LQRNSTGPILLRGSRLEFEAFPSLAPQLARRF-PFLARLLPQKPINPWIVASL------- 498
Query: 4526 FFAKGFPHSRKLXXXXXXXXXILWAYRRFMGPDAPQAMFDQYNGYFNPKPWKLRIAQGPT 4347
A P + A R F GPD PQAM D+Y+ F+P+ W+L + +GP
Sbjct: 499 AVAVAIPAAS-------------LAVRWFFGPDTPQAMHDRYHTMFHPREWRLTLPRGPI 545
Query: 4346 KCSRGQFLPF------CPRPHSLIQXXXXXXDI-FLINAVSIDLQTEVPE-HIRSLALSK 4191
C R F P P P S + DL++ P+ H
Sbjct: 546 SCGRSSFSPLPHPPSPTPAPDSRAGPLQPPSALPSTHEPAPADLESPAPQAHAPQTEPPS 605
Query: 4190 PLHYEPS--DDIPDPAPVLIPTKVANKITAISTSGAPQ 4083
P+ + + D P PAP PT A+ + T AP+
Sbjct: 606 PVIEQEARPDPFPAPAPRPAPTPSASAPSPAPTPSAPE 643
>ref|YP_003475889.1| replicase-associated polyprotein [Olive latent virus 3]
gi|289467899|gb|ACN94861.2| replicase-associated
polyprotein [Olive latent virus 3]
Length = 2000
Score = 1083 bits (2800), Expect = 0.0
Identities = 591/1206 (49%), Positives = 759/1206 (62%), Gaps = 40/1206 (3%)
Frame = -1
Query: 3821 TGSLDTVNVAIPDDTTPERSTLILDPSGFGEVSTFAQLYPDD-YVLGCAEFFCRKRHHGV 3645
+GSL +N + + + L DPSG G V+ F +L+P ++ G EF R R
Sbjct: 807 SGSLTAINPTL-EPFEFNHALLGADPSGQGPVAQFNELFPSTLWLQGTGEFLTRSRVQAP 865
Query: 3644 STAPFPTMPCLLDAVGSCLGVTPAELWSTLCHHLPDSLLQNPQITSCGLSTDHLTALSHF 3465
S+AP+P M CLL A+ + + LW+ LC +LPDS L I GLSTDH L+
Sbjct: 866 SSAPYPAMDCLLHAIHTATRIPKPTLWAGLCSNLPDSFLDPQLIAKHGLSTDHFAVLARL 925
Query: 3464 YQFKAFVTSDQEPIPHPYGVDSAPTTIRFSHTTGN---PGHF-FITSDPGAPPPPKXXXX 3297
+ + T GV A T R HT PGHF ++ P +
Sbjct: 926 FSLRC--TFQSRSGTQTMGVADATHTFRIRHTPPTEDAPGHFEYMEEIPES-------LT 976
Query: 3296 XXXXXXXXXXLTTFRLNGELLPFQTVHNYRANVKRAKNLISNMKNGFDGVMATVDPQHPN 3117
+FR NG LLPF+ VH Y +NV RAKNLISNMKNGFDGVMA+ DP HP
Sbjct: 977 GAFAQDLAHFALSFRFNGYLLPFKHVHTYTSNVSRAKNLISNMKNGFDGVMASADPLHPG 1036
Query: 3116 SAKEKFVTTDGILDIAKSRSIKLIHIAGFPGCGKSYPIQRLLLTAPRARNFRISVPTAEL 2937
+E+F++ D LDIA R +LIHI+GF GCGK+YPI +LL P R FR++VPT EL
Sbjct: 1037 QTRERFLSMDNQLDIAVPRETRLIHISGFAGCGKTYPITQLL-KKPVFRQFRVAVPTTEL 1095
Query: 2936 RHEWKASMDLEPKNNWRIGTWEXXXXXXXXXLVVDEIYKMPRGYLDL--AILMDPHLEMV 2763
R EWK + LEP + WRIGTWE LV+DE+YKMPRGYLDL L+ P ++
Sbjct: 1096 RSEWKDLLTLEPADRWRIGTWESSLLKSSRVLVIDEVYKMPRGYLDLRPTPLIRPIQFVI 1155
Query: 2762 IVLGDPLQGEYHSTHPQSSNHKLSSEINHLRPYLDFYCAWTRRCPKLIADFFGVPTTSQE 2583
I P QGEY+STHP SSN +++SEI HL+PY+DFYC W+ R PK +A VPTTS +
Sbjct: 1156 IPWRSPSQGEYNSTHPHSSNLRITSEIIHLQPYIDFYCFWSYRIPKNVAACLKVPTTSNK 1215
Query: 2582 PGFCRPVNHLPMNCPILTNSHSAALTLTEAHSRACTISASQGSTYSSPVVIHLDRHSSQL 2403
GF R +N +P +LT S S+ TL + + TI++SQGST IHLDR+S L
Sbjct: 1216 TGFIRRLNSIPNANKVLTCSQSSMKTLNQCGFSSVTIASSQGSTLQEAACIHLDRNSRNL 1275
Query: 2402 SNSMALVALTRSTKGVLFSGDQSILQPGPHSAKLFSQLTQFQSSHSPDDRYPIQTHFIEQ 2223
SNS +LVA+TRS G++F+GD +L S LFS L Q +S ++ F +
Sbjct: 1276 SNSHSLVAITRSKSGIIFTGDFHLLDGTTSSNYLFSCLAQGKS-------VDLEMLFPKT 1328
Query: 2222 LRGVTLISTPLKSRK--LVGACP--SEVKHSSTVRDFTH--------------HAIRGST 2097
+ P++SR+ LVG+ ++ + + DF+ + +GS
Sbjct: 1329 FPPCPRLLQPIRSRRTILVGSSEDWAQFYRPTPLEDFSRFQATPVPETAIPCPNGYQGSP 1388
Query: 2096 --VRDPSYQ--------PSLAHVVRHTSP-----AIYHSELNRLHPDFKGDAVRSAVIVC 1962
+ PS+ S+ + TSP ++ +P+ GD + + IV
Sbjct: 1389 EMIEGPSHANLPFEADLDSIDPLEGETSPYSLGFGVHARTARTTNPEATGDIITQSEIVL 1448
Query: 1961 GDGIDHLPRVSPHFIAETRLPYHSDMPSAMPSQCSLSPPTFSAPVFEPVYPGEDFETLAS 1782
GDG ++P+VS HF+ ETR P H D PSA+PS SP S FEPVYPGE FE +A
Sbjct: 1449 GDGELNMPQVSTHFLPETRRPLHFDNPSALPSSTVPSPVDLSRTAFEPVYPGETFENIAG 1508
Query: 1781 TFLPAHDPHLREIIFKGERSAQFPYLNQPFDLFLQPQTLIAAQHHGQKDSTLLPASIPKR 1602
F+ DP + EII + S QFP L+QPF L QP +L+AA H+ Q D TLLPASI KR
Sbjct: 1509 HFMGPRDPEVLEIIHNDQMSNQFPLLDQPFSLAAQPSSLMAAIHNSQNDPTLLPASIGKR 1568
Query: 1601 LRFRRNSTPYVISPKDQLLGELLFISLCKAYNRHPSSVEPFDEALFADCINLNEFAQLSS 1422
LRFR ++ PY I+ +DQ+LG LLF +LC+AY RHP +V PF+ FA+CINLNE+AQL+S
Sbjct: 1569 LRFRPSNAPYPITAEDQILGSLLFEALCRAYRRHPEAVVPFNPIAFAECINLNEYAQLTS 1628
Query: 1421 KTQTTIMANASRSDPDWRWSAVRIFSKSQHKTNEASIFGSWKACQTLALMHDAVVLLLGP 1242
KTQ I++NA RSDPDWR+SAVRIFSK+QHK N+ S FGSWKACQTLALMHDAV+LLLGP
Sbjct: 1629 KTQAVIISNARRSDPDWRYSAVRIFSKTQHKVNDGSFFGSWKACQTLALMHDAVILLLGP 1688
Query: 1241 VKKYQRLFDNRDRPANIYVHASHTPFQMSDWCRENLSSCEHVANDYTAFDQSQHGEAVVL 1062
VKKYQRLFD+ DRP++IY+HA HTP MS+WC++NL+ H+ NDYT+FDQSQHGEAVVL
Sbjct: 1689 VKKYQRLFDSEDRPSHIYIHAGHTPQDMSNWCQQNLTDSIHLTNDYTSFDQSQHGEAVVL 1748
Query: 1061 EIKKMRRLSIPEPLIQLHAYLKTNVTTQFGPLTCMRLTGEPGTYDDNTDYNLAVIHSQYL 882
E KM RLSIP+ LI LH +LK NV+TQFGPLTCMRLTGEPGTYDDN+DYNLAVIH QY
Sbjct: 1749 EQMKMARLSIPQHLIDLHTHLKCNVSTQFGPLTCMRLTGEPGTYDDNSDYNLAVIHLQYA 1808
Query: 881 MASIPHMVSGDDSLIDRQPLPNPLWITIGPMLHLRFKLEVTRYPLFCGYLVGPSGAVRSP 702
+ S P MVSGDDSL+D +P W I P+L LRFK E+ RY LFCGY VG SGAVR P
Sbjct: 1809 VGSTPCMVSGDDSLLDSKPPIRDEWTGIAPLLALRFKTELDRYSLFCGYFVGSSGAVRCP 1868
Query: 701 ITLFAKSLMALDDGSLDDKLASYLTEFSVGHSLGQEMWNLIPVEQVHYQAALFDFFCRKA 522
LFAK ++A+DDGS+ K+ASYLTEFS+GHSLG E W L+PVEQV +Q+A FDFFCR
Sbjct: 1869 RALFAKIMIAVDDGSIPLKIASYLTEFSIGHSLGDEFWQLLPVEQVVFQSACFDFFCRNC 1928
Query: 521 SREQKLVLKIGEVPDTIISTILSSARAIARPLYAYLSSSARKLLLKGSKTYRPFDTEESL 342
KL+L++GE P +I+ + + +Y+ LS++AR LL+K T P ++ E
Sbjct: 1929 PPAAKLLLRLGEAPQSILEATFGKLKWASNAVYSMLSATARHLLIKSRLTRPPPESVEVS 1988
Query: 341 QFEGVL 324
Q +G L
Sbjct: 1989 QLQGQL 1994
Score = 466 bits (1199), Expect = e-128
Identities = 249/553 (45%), Positives = 339/553 (61%), Gaps = 1/553 (0%)
Frame = -1
Query: 5954 LFESLSNTIHRDTVTSPLVEAVADPLRDSLEKYPYAVSPSLTSFLSKRGINISGYGAKTH 5775
L + L+ T+HRDT+ +PL+E ++ PLRDSL YP++V PSL + L GIN +G K H
Sbjct: 132 LVDFLNPTVHRDTIAAPLLETISQPLRDSLRTYPWSVPPSLQTHLQSLGINAHNFGYKPH 191
Query: 5774 PHPAHKNIENYILQDVWPNLIRNQSSVLFMKPSKFRKLEQKDSNFHELINYRLTPQDTTR 5595
PHPAHK IE ++L + W +L S++LFMKPSKF+KL ++ NF EL NYRLT +D+TR
Sbjct: 192 PHPAHKVIETHLLHEHWRHLATQPSAILFMKPSKFQKLHNQNDNFTELHNYRLTSKDSTR 251
Query: 5594 YPSSSTTLPAHSTVFMHDALMYYTPGDIADLFLSAPHLTQLYATLVVPPESSFTDTSFFP 5415
YP +S ++P ++F+HDALMY+TP I DLF +P L + +A+LV PPES+FTD SF+P
Sbjct: 252 YPETSRSIPNLPSIFLHDALMYFTPSQILDLFERSPALEKCFASLVCPPESNFTDISFYP 311
Query: 5414 ELYNFHFHDTDLVYELEGNPSHHYIQPKSALDWLRTSTIRCSDLTLSISILESIGPVHHL 5235
ELY F + YELEGNP+ Y QPKSA++WL+ +TI+ + +LSI+ILES GP H L
Sbjct: 312 ELYRFRAVGDSITYELEGNPASSYTQPKSAIEWLKITTIKGPNFSLSITILESWGPCHSL 371
Query: 5234 LIQRGLAPKHRENTTRDFDTPDCFLLPAPTSLSQNVRDRLVPLAAYHSLRAYVMAVRTLR 5055
LIQRGL P H+E++T+ F TP+ LLPAP+ L Q++R RLVP Y S+ YV AVRTLR
Sbjct: 372 LIQRGLLPLHQEHSTQAFKTPEAILLPAPSHLQQDLRHRLVPTRVYESIFVYVRAVRTLR 431
Query: 5054 TTDPAGFVRTQSTKPEFAWVTAEAWDSLQNFALLTCNQRPAVSYLTFASSFARIKHWXXX 4875
TDP+G+VRTQS+KPE++WVT AWD+L NFALLTC RP Y + S+ R+ W
Sbjct: 432 VTDPSGYVRTQSSKPEYSWVTTAAWDNLANFALLTCAHRPRARYYLYWSTLDRLMGWIRA 491
Query: 4874 XXXXXXXXXXXXXXAVSFTTVKVAHYCSTRQIDSLILFGKQIVRPSCPLNSPFSLHQYFS 4695
++ +A ++DSL L + +++PS P N PF L + F
Sbjct: 492 HKLALLTASTPLASLGLASSALLACRPFWMRLDSLQLLNRWVIKPSFPRNLPFLLPKAFQ 551
Query: 4694 RTAQLPPSLSTQLPRFELVTSPRIITKWSPCLARFLLSTPFFRTLTTQLNFLSKKCFFAK 4515
A L + LPR RI+ ++ L L PF R L + S
Sbjct: 552 PKASL--FKAEFLPRH---APSRILPEFFDAL---LKKAPFLRPLFSDAPIPS------- 596
Query: 4514 GFPHSRKLXXXXXXXXXILWAYRRFMGPDAPQAMFDQYNGYFNPKPWKLRIAQGPTKCSR 4335
+ L I + RRF+GP++PQA+ D+Y YF+PKPW+L + QGP +
Sbjct: 597 ---WAWALCATGVAIPIIALSIRRFLGPNSPQALLDEYQSYFHPKPWQLILEQGPIFANP 653
Query: 4334 GQFLPFC-PRPHS 4299
F P C P P S
Sbjct: 654 EPFSPHCQPIPSS 666
>ref|NP_044447.1| replicase-associated polyprotein [Oat blue dwarf virus]
gi|1843580|gb|AAC57874.1| replicase-associated
polyprotein [oat blue dwarf virus]
Length = 2066
Score = 1077 bits (2786), Expect = 0.0
Identities = 598/1177 (50%), Positives = 749/1177 (63%), Gaps = 14/1177 (1%)
Frame = -1
Query: 3764 STLILDPSGFGEVSTFAQLYPDDYVLGCAEFFCRKRHHGVSTAPFPTMPCLLDAVGSCLG 3585
S L DPS G V + L+P +Y F R R G S P+P M CLL A
Sbjct: 690 SPLARDPSASGPVRFYRDLFPANYAGDSGTFDFRARASGRSPTPYPAMDCLLVATEQATR 749
Query: 3584 VTPAELWSTLCHHLPDSLLQNPQITSCGLSTDHLTALSHFYQFKAFVTSDQEPIPHPYGV 3405
++ LW L PDS L I GLSTDH L+H + A S + I G+
Sbjct: 750 ISREALWDCLTATCPDSFLDPKSIAQHGLSTDHFVILAHRFSLCANFHSAEHVIQ--LGM 807
Query: 3404 DSAPTTIRFSHTTGN---PGHFFITSDPGAPPPPKXXXXXXXXXXXXXXLTTFRLNGELL 3234
A + +HT G+ PGHF + G P F ++G+LL
Sbjct: 808 ADATSIFMINHTAGSAGLPGHFSLRL--GDQP---RALNGGLAQDLAVAALRFNISGDLL 862
Query: 3233 PFQTVHNYRANVKRAKNLISNMKNGFDGVMATVDPQHPNSAKEKFVTTDGILDIAKSRSI 3054
P ++VH YR+ KRAKNL+SNMKNGFDGVMA+++P P+ A+EK V DG+LDIA+ RS+
Sbjct: 863 PTRSVHTYRSWPKRAKNLVSNMKNGFDGVMASINPIRPSDAREKIVALDGLLDIARPRSV 922
Query: 3053 KLIHIAGFPGCGKSYPIQRLLLTAPRARNFRISVPTAELRHEWKASMDLEPKNNWRIGTW 2874
+LIHIAGFPGCGK++PI +LL TA R+F+++VPT ELR EWK M L P WR GTW
Sbjct: 923 RLIHIAGFPGCGKTHPITKLLHTAA-FRDFKLAVPTTELRSEWKELMKLSPSQAWRFGTW 981
Query: 2873 EXXXXXXXXXLVVDEIYKMPRGYLDLAILMDPHLEMVIVLGDPLQGEYHSTHPQSSNHKL 2694
E LV+DEIYK+PRGYLDLAI D +E VI LGDPLQGEYHSTHP SSN +L
Sbjct: 982 ESSLLKSARILVIDEIYKLPRGYLDLAIHSDSSIEFVIALGDPLQGEYHSTHPSSSNSRL 1041
Query: 2693 SSEINHLRPYLDFYCAWTRRCPKLIADFFGVPTTSQEPGFCRPVNHLPMNCPILTNSHSA 2514
E++HL PYLD+YC W+ R P+ +A FF V + + GF R P +LTNS ++
Sbjct: 1042 IPEVSHLAPYLDYYCLWSYRVPQDVAAFFQVQSHNPALGFARLSKQFPTTGRVLTNSQNS 1101
Query: 2513 ALTLTEAHSRACTISASQGSTYSSPVVIHLDRHSSQLSNSMALVALTRSTKGVLFSGDQS 2334
LT+T+ A TI++SQGSTYS IHLDR+SS LS S +LVALTRS GV FSGD +
Sbjct: 1102 MLTMTQCGYSAVTIASSQGSTYSGATHIHLDRNSSLLSPSNSLVALTRSRTGVFFSGDPA 1161
Query: 2333 ILQPGPHSAKLFSQLTQFQSSHSPDDRYPIQTHFIEQLRGVTLISTPLKSR--KLVGA-C 2163
+L GP+S +FS Q +S H I+ F TL+ +PL+ R +L GA
Sbjct: 1162 LLNGGPNSNLMFSAFFQGKSRH-------IRAWFPTLFPTATLLFSPLRQRHNRLTGALA 1214
Query: 2162 PSEVKHSSTVRDFTHHAIRGSTVRDPSYQPSLAHVVRHTSPAIYHSELNRLHPDFKGDAV 1983
P++ H + D PS P A S + + P + D +
Sbjct: 1215 PAQPSHL-LLPDL------------PSLPPLPASGPYSRSFPVRSRFAAAVKPSDRSDVL 1261
Query: 1982 RSAVIVCGDGIDHLPRVSPHFIAETRLPYHSDMPSAMPSQCSLSPPTFSAP---VFEPVY 1812
A I GDG + PR+ F+ ETR P H D+PS P + PP+ AP FEPVY
Sbjct: 1262 SWAPIAVGDGETNAPRIDTSFLPETRRPLHFDLPSFRPQ--APPPPSDPAPSGTAFEPVY 1319
Query: 1811 PGEDFETLASTFLPAHDPHLREIIFKGERSAQFPYLNQPFDLFLQPQTLIAAQHHGQKDS 1632
PGE FE L + FLPAHDP REI ++ + S QFP++++ + L QP TL+A H + D
Sbjct: 1320 PGETFENLVAHFLPAHDPTDREIHWRRQLSNQFPHVDKEYHLAAQPMTLLAPIHDSKHDP 1379
Query: 1631 TLLPASIPKRLRFRRNSTPYVISPKDQLLGELLFISLCKAYNRHPSSVEPFDEALFADCI 1452
TLL ASI KRLRFR +++PY ISP+D+LLG+LL+ SLC+AY+R P++ PFDEALF +CI
Sbjct: 1380 TLLAASIQKRLRFRPSASPYRISPRDELLGQLLYESLCRAYHRSPTTTHPFDEALFVECI 1439
Query: 1451 NLNEFAQLSSKTQTTIMANASRSDPDWRWSAVRIFSKSQHKTNEASIFGSWKACQTLALM 1272
+LNEFAQL+SKTQ IM NA RSDPDWRWSAVRIFSK+QHK NE SIFG+WKACQTLALM
Sbjct: 1440 DLNEFAQLTSKTQAVIMGNARRSDPDWRWSAVRIFSKTQHKVNEGSIFGAWKACQTLALM 1499
Query: 1271 HDAVVLLLGPVKKYQRLFDNRDRPANIYVHASHTPFQMSDWCRENLSSCEHVANDYTAFD 1092
HDAVVLLLGPVKKYQR+FD RDRPA++Y+HA TP MS WC+ +L+ +ANDYTAFD
Sbjct: 1500 HDAVVLLLGPVKKYQRVFDARDRPAHLYIHAGQTPSSMSLWCQTHLTPAVKLANDYTAFD 1559
Query: 1091 QSQHGEAVVLEIKKMRRLSIPEPLIQLHAYLKTNVTTQFGPLTCMRLTGEPGTYDDNTDY 912
QSQHGEAVVLE KKM RLSIP+ LI LH +LKT+V TQFGPLTCMRLTGEPGTYDDNTDY
Sbjct: 1560 QSQHGEAVVLERKKMERLSIPDHLISLHVHLKTHVETQFGPLTCMRLTGEPGTYDDNTDY 1619
Query: 911 NLAVIHSQYLMASIPHMVSGDDSLIDRQPLPNPLWITIGPMLHLRFKLEVTRYPLFCGYL 732
NLAVI+ +Y A +P MVSGDDSL+D +P P W+ I P+L LRFK E Y FCGY
Sbjct: 1620 NLAVINLEYAAAHVPTMVSGDDSLLDFEPPRRPEWVAIEPLLALRFKKERGLYATFCGYY 1679
Query: 731 VGPSGAVRSPITLFAKSLMALDDGSLDDKLASYLTEFSVGHSLGQEMWNLIPVEQVHYQA 552
G VRSPI LFAK +A+DD S+ DKLA+YL EF+VGHSLG +W+ +P+ V +Q+
Sbjct: 1680 ASRVGCVRSPIALFAKLAIAVDDSSISDKLAAYLMEFAVGHSLGDSLWSALPLSAVPFQS 1739
Query: 551 ALFDFFCRKASREQKLVLKIGEVPDTIISTILSSARAIARPLYAYLSSSARKLLLKGSKT 372
A FDFFCR+A R+ KL L +GEVP+TII LS ++ +Y+ L S R +L S+
Sbjct: 1740 ACFDFFCRRAPRDLKLALHLGEVPETIIQR-LSHLSWLSHAVYSLLPSRLRLAILHSSRQ 1798
Query: 371 YRPFDTE---ESLQFEGVLQ--HAVSIATPPPRLTGG 276
+R + SLQ E +LQ HA + P L GG
Sbjct: 1799 HRSLPEDPAVSSLQGE-LLQTFHAPMPSLPSLPLFGG 1834
Score = 469 bits (1207), Expect = e-129
Identities = 270/638 (42%), Positives = 357/638 (55%), Gaps = 14/638 (2%)
Frame = -1
Query: 5954 LFESLSNTIHRDTVTSPLVEAVADPLRDSLEKYPYAVSPSLTSFLSKRGINISGYGAKTH 5775
+ E+LS+TIHRDT+ +PL+E +A P RDSL +P+AV S FL + GI ++G+G K H
Sbjct: 27 VIETLSSTIHRDTIAAPLMETLASPYRDSLRDFPWAVPASALPFLQECGITVAGHGFKAH 86
Query: 5774 PHPAHKNIENYILQDVWPNLIRNQSSVLFMKPSKFRKLEQKDSNFHELINYRLTPQDTTR 5595
PHP HK IE ++L VWP+ + SSVLFMKPSKF KL++ ++NF L NYRLT +DT R
Sbjct: 87 PHPVHKTIETHLLHKVWPHYAQVPSSVLFMKPSKFAKLQRGNANFSALHNYRLTAKDTPR 146
Query: 5594 YPSSSTTLPAHSTVFMHDALMYYTPGDIADLFLSAPHLTQLYATLVVPPESSFTDTSFFP 5415
YP++ST+LP T FMHDALMYYTP I DLFLS P L +LYA+LVVPPESSFT S P
Sbjct: 147 YPNTSTSLPDTETAFMHDALMYYTPAQIVDLFLSCPKLEKLYASLVVPPESSFTSISLHP 206
Query: 5414 ELYNFHFHDTDLVYELEGNPSHHYIQPKSALDWLRTSTIRCSDLTLSISILESIGPVHHL 5235
+LY F F L+YELEGNP+H+Y QP+SALDWLRT+TIR ++L++S L+S GP H L
Sbjct: 207 DLYRFRFDGDRLIYELEGNPAHNYTQPRSALDWLRTTTIRGPGVSLTVSRLDSWGPCHSL 266
Query: 5234 LIQRGLAPKHRENTTRDFDTPDCFLLPAPTSLSQNVRDRLVPLAAYHSLRAYVMAVRTLR 5055
LIQRG+ P H E+ + F P +P P+SL Q++R RLVP Y++L YV AVRTLR
Sbjct: 267 LIQRGIPPMHAEHDSISFRGPRAVAIPEPSSLHQDLRHRLVPEDVYNALFLYVRAVRTLR 326
Query: 5054 TTDPAGFVRTQSTKPEFAWVTAEAWDSLQNFALLTCNQRPAVSYLTFASSFARIKHWXXX 4875
TDPAGFVRTQ +KPE+AWVT+ AWD+L +FALLT RP S+ F+S+F R++HW
Sbjct: 327 VTDPAGFVRTQCSKPEYAWVTSSAWDNLAHFALLTAPHRPRTSFYLFSSTFQRLEHWVRH 386
Query: 4874 XXXXXXXXXXXXXXAVSFTTVKVAHYCSTRQIDSLILFGKQIVRPSCPLN--SPFSLHQY 4701
S + S I L L + ++ P P S
Sbjct: 387 HTFLLAGLTTAFALPPSAWLANLVARASASHIQGLALARRWLITPPHLFRPPPPPSFALL 446
Query: 4700 FSRTAQLPPSLSTQLPRFELVTS--PRIITKWSPCLARFLLSTPFFRTLTTQLNFLSKKC 4527
R + P L FE S P++ ++ P LAR L P + L
Sbjct: 447 LQRNSTGPVLLRGSRLEFEAFPSLAPQLARRF-PFLARLLPQKPIDPWVVASL------- 498
Query: 4526 FFAKGFPHSRKLXXXXXXXXXILWAYRRFMGPDAPQAMFDQYNGYFNPKPWKLRIAQGPT 4347
A P + A R F GPD PQAM D+Y+ F+P+ W+L + +GP
Sbjct: 499 AVAVAIPAAS-------------LAVRWFFGPDTPQAMHDRYHTMFHPREWRLTLPRGPI 545
Query: 4346 KCSRGQFLPF------CPRPHSLIQ-XXXXXXDIFLINAVSIDLQTEV-PEHIRSLALSK 4191
C R F P P P S + DL+ + P H
Sbjct: 546 SCGRSSFSPLPHPPSPTPAPDSRAEPLQPPSAPPSTHEPAPADLEPQAPPAHAPQTEPPS 605
Query: 4190 PLHYEPS--DDIPDPAPVLIPTKVANKITAISTSGAPQ 4083
P+ + + + +P PAP+ PT A+ + T AP+
Sbjct: 606 PVIEQEARPNPLPAPAPLSAPTPSASAPSLAPTPSAPE 643
>gb|ACV53023.1| polyprotein [Blackberry virus S]
Length = 2035
Score = 1076 bits (2782), Expect = 0.0
Identities = 583/1183 (49%), Positives = 754/1183 (63%), Gaps = 7/1183 (0%)
Frame = -1
Query: 3821 TGSLDTVNVAIPDDTTPERSTLILDPSGFGEVSTFAQLYPDDYVLGCAEFFCRKRHHGVS 3642
+G + + A P+ PE S L D S G V F++L+P Y+ F R R G +
Sbjct: 679 SGVVSNLTPAAPEPAAPEPSPLQADSSARGPVQLFSELFPGSYIGTTGAFNSRYRASGRA 738
Query: 3641 TAPFPT-MPCLLDAVGSCLGVTPAELWSTLCHHLPDSLLQNPQITSCGLSTDHLTALSHF 3465
P+P CLL + ++ +LW TL +LPD LL +I+ GLSTDH L+ F
Sbjct: 739 PTPYPAGTDCLLVTIEQATSISRRDLWETLVTNLPDCLLAPCEISKHGLSTDHFAVLAFF 798
Query: 3464 YQFKAFVTSDQEPIPHPYGVDSAPTTIRFSHTTGNP---GHFFITSDPGAPPPPKXXXXX 3294
Y + + P+ G+ A T R H + GHF + D P
Sbjct: 799 YSLRVTFLTSHGPVD--LGMSDATTNFRIDHQPESKDLMGHFSLHQDS----KPVPTLNG 852
Query: 3293 XXXXXXXXXLTTFRLNGELLPFQTVHNYRANVKRAKNLISNMKNGFDGVMATVDPQHPNS 3114
T F L+G LLPF TVH + RAKNLISNMKNGFDGV+A +DP H ++
Sbjct: 853 GTGSELATAATRFNLDGCLLPFNTVHTFVTAPSRAKNLISNMKNGFDGVLANIDPHHTST 912
Query: 3113 AKEKFVTTDGILDIAKSRSIKLIHIAGFPGCGKSYPIQRLLLTAPRARNFRISVPTAELR 2934
A+++ + DGI+D+AK R ++L HIAGF GCGKSYPI RLL T P R F+++VPT ELR
Sbjct: 913 ARDRLLCLDGIIDVAKPRRVRLFHIAGFAGCGKSYPIARLLKT-PLFREFKVAVPTVELR 971
Query: 2933 HEWKASMDLEPKNNWRIGTWEXXXXXXXXXLVVDEIYKMPRGYLDLAILMDPHLEMVIVL 2754
EWK + + P WR+ TWE LV+DE+YKMPRGY+DLA+ DP +E+VI+L
Sbjct: 972 AEWKDLLKIRPGAQWRLSTWESSLLKSARILVIDEVYKMPRGYVDLAVHADPTIELVILL 1031
Query: 2753 GDPLQGEYHSTHPQSSNHKLSSEINHLRPYLDFYCAWTRRCPKLIADFFGVPTTSQEPGF 2574
GDPLQG YHSTHP S+N +LS E ++L Y+DFYC W+ R P+ +A FFGV +T+ PGF
Sbjct: 1032 GDPLQGVYHSTHPSSTNSRLSPETHYLSKYIDFYCLWSHRIPQDVAKFFGVHSTNLAPGF 1091
Query: 2573 CRPVNHLPMNCPILTNSHSAALTLTEAHSRACTISASQGSTYSSPVVIHLDRHSSQLSNS 2394
+ V +L + ILTNS ++ TL + + TI++SQGSTY I LDR+S+ LS+S
Sbjct: 1092 SKWVPNLSPSSKILTNSQNSMKTLVDCGFASVTIASSQGSTYPGATNILLDRNSALLSHS 1151
Query: 2393 MALVALTRSTKGVLFSGDQSILQPGPHSAKLFSQLTQFQSSHSPDDRYPIQTHFIEQLRG 2214
+LVALTRS KGV+F+GD+ +L+ GP S LFS+ + + F +L
Sbjct: 1152 NSLVALTRSKKGVVFTGDRKMLEEGPTSNLLFSR-------YFTGKVVSLAGLFPSELPK 1204
Query: 2213 VTLISTPLKSR--KLVGACPSEVKHSSTVRDFTHHAIRGSTVRDPSYQPSLAHVVRHTSP 2040
++ PL SR KL GA HAI + P + S+ TS
Sbjct: 1205 CPHLTVPLTSRSVKLSGA------------GLYDHAIPFRSASAPMIKSSV------TSD 1246
Query: 2039 AIYHSELNRLHPDFKGDAVRSAVIVCGDGIDHLPRVSPHFIAETRLPYHSDMPSAMPSQC 1860
I D VR + GDG + P++S HF+ ETR P H D+PS PS
Sbjct: 1247 VIL-------------DPVRPFL---GDGDLNAPQISTHFLPETRRPLHFDIPSGKPSSD 1290
Query: 1859 SLSPPTFSAPVFEPVYPGEDFETLASTFLPAHDPHLREIIFKGERSAQFPYLNQPFDLFL 1680
S + + PV EPVYPGE FE LA+ FLP HDP REI F+G+ S QFP++N+PF+L
Sbjct: 1291 SPASAEPTVPVHEPVYPGETFENLAAHFLPCHDPEDREIHFRGQLSNQFPHINRPFELAC 1350
Query: 1679 QPQTLIAAQHHGQKDSTLLPASIPKRLRFRRNSTPYVISPKDQLLGELLFISLCKAYNRH 1500
Q +L+AA H + D TLLPASIPKRLRFR +S PY ++ KD++LG LL+ LC+AY+R+
Sbjct: 1351 QSSSLLAAVHSERDDPTLLPASIPKRLRFRPSSAPYRLTAKDEVLGSLLYEGLCRAYHRN 1410
Query: 1499 PSSVEPFDEALFADCINLNEFAQLSSKTQTTIMANASRSDPDWRWSAVRIFSKSQHKTNE 1320
+V PF+E L+ +CI LNEFAQLSSKTQ+ IMAN+ RSDPDWR+SAVRIFSK+QHK NE
Sbjct: 1411 SFTVLPFNETLYLECIALNEFAQLSSKTQSVIMANSKRSDPDWRYSAVRIFSKAQHKVNE 1470
Query: 1319 ASIFGSWKACQTLALMHDAVVLLLGPVKKYQRLFDNRDRPANIYVHASHTPFQMSDWCRE 1140
SIFG+WKACQTLALMHDAVVLLLGPVKKYQR+FD +DRPA++YVHA +TP QMS WC+
Sbjct: 1471 NSIFGNWKACQTLALMHDAVVLLLGPVKKYQRMFDAQDRPAHLYVHAGNTPAQMSSWCQN 1530
Query: 1139 NLSSCEHVANDYTAFDQSQHGEAVVLEIKKMRRLSIPEPLIQLHAYLKTNVTTQFGPLTC 960
+L+ H+ANDYTAF QSQHGEAVVLE KKM RLSIP+ LI LH +LKTNV TQFGPLTC
Sbjct: 1531 HLTDTVHLANDYTAFVQSQHGEAVVLERKKMERLSIPQALIDLHVFLKTNVETQFGPLTC 1590
Query: 959 MRLTGEPGTYDDNTDYNLAVIHSQYLMASIPHMVSGDDSLIDRQPLPNPLWITIGPMLHL 780
MRLTGEPGTYDDN+DYNLAVI+ +Y + +P M+SGDDSL+D +P P W + P+L L
Sbjct: 1591 MRLTGEPGTYDDNSDYNLAVINLEYSASHVPTMISGDDSLLDFEPPRRPEWSALEPLLAL 1650
Query: 779 RFKLEVTRYPLFCGYLVGPSGAVRSPITLFAKSLMALDDGSLDDKLASYLTEFSVGHSLG 600
RFK E RY FCGY VG +GAVRSPI LFAK ++A+DDGSL DKL SYL EF+VGHSLG
Sbjct: 1651 RFKKERDRYATFCGYYVGKAGAVRSPIALFAKLMIAVDDGSLGDKLISYLAEFAVGHSLG 1710
Query: 599 QEMWNLIPVEQVHYQAALFDFFCRKASREQKLVLKIGEVPDTIISTILSSARAIARPLYA 420
W L+P+E V +Q+A FDFFCR+A K+ LK+GEV ++I++ + + +Y+
Sbjct: 1711 DPFWTLLPLEAVLFQSACFDFFCRRAPPALKISLKLGEVSESIMARLGRGLNWASSAVYS 1770
Query: 419 YLSSSARKLLLKGSKTYRPF-DTEESLQFEGVLQHAVSIATPP 294
LSS+ R+ LL S+ R D E + +G L + P
Sbjct: 1771 MLSSAQRRALLTSSRQGRSLPDNPEVSKLQGELLQSFQFVPQP 1813
Score = 429 bits (1104), Expect = e-117
Identities = 255/630 (40%), Positives = 351/630 (55%), Gaps = 6/630 (0%)
Frame = -1
Query: 5954 LFESLSNTIHRDTVTSPLVEAVADPLRDSLEKYPYAVSPSLTSFLSKRGINISGYGAKTH 5775
+ E+L+ T HRDT++S L+E V DP R SL++YP++V +FL GI+ SG+G K+H
Sbjct: 47 VIEALAPTSHRDTISSALLETVVDPFRSSLQRYPWSVPTHHQTFLQNCGIDASGFGFKSH 106
Query: 5774 PHPAHKNIENYILQDVWPNLIRNQSSVLFMKPSKFRKLEQKDSNFHELINYRLTPQDTTR 5595
PHP HK +E ++ + W L S+V+FMKPSKF KL+ +F EL NYRL +D+TR
Sbjct: 107 PHPVHKILETNLIHNTWSCLASTDSAVMFMKPSKFAKLQAAQPHFTELHNYRLVAKDSTR 166
Query: 5594 YPSSSTTLPAHSTVFMHDALMYYTPGDIADLFLSAPHLTQLYATLVVPPESSFTDTSFFP 5415
YP +S+ +P T+FMHD +MYYTP + DLFL +P L +LYA+LVVPPES FT + +P
Sbjct: 167 YPVTSSHVPNIETIFMHDTIMYYTPAQVLDLFLQSPKLQKLYASLVVPPESDFTSITLYP 226
Query: 5414 ELYNFHFHDTDLVYELEGNPSHHYIQPKSALDWLRTSTIRCSDLTLSISILESIGPVHHL 5235
ELY F F LVYELE NP+H+Y QPKSAL WL+T+TI D +L++SIL+S GP+H L
Sbjct: 227 ELYRFRFDGHSLVYELEQNPAHNYTQPKSALVWLKTTTIIGPDFSLTVSILDSQGPLHSL 286
Query: 5234 LIQRGLAPKHRENTTRDFDTPDCFLLPAPTSLSQNVRDRLVPLAAYHSLRAYVMAVRTLR 5055
LIQRG P H + T +F TP LLPAP+SL+Q+VR RLVP Y ++ YV VRTLR
Sbjct: 287 LIQRGEPPLHSRHDTAEFRTPPAILLPAPSSLNQDVRHRLVPKKVYDAVFLYVRTVRTLR 346
Query: 5054 TTDPAGFVRTQSTKPEFAWVTAEAWDSLQNFALLTCNQRPAVSYLTFASSFARIKHW-XX 4878
TDPAGF+RTQS+K E +WVT+ AWD+L +FAL T + RP +Y F+S+ AR+ HW
Sbjct: 347 VTDPAGFIRTQSSKAEHSWVTSFAWDNLAHFALQTASHRPRTTYYLFSSALARLSHWCRN 406
Query: 4877 XXXXXXXXXXXXXXXAVSFTTVKVAHYCSTRQIDSLILFGKQIVRPSCPLNSPFSLHQYF 4698
A + +++ V+ + + +++SL +F + I P L +P +
Sbjct: 407 HQLALSWASVVAISPAAALSSLSVSKFLRS-ELNSLAIFRRWIKAPPHFLFAPKAPFLSM 465
Query: 4697 S-RTAQLPPSL--STQLPRFELVTSPRIITKWSPCLARFLLSTPFFRTLTTQLNFLSKKC 4527
S R + P L +T T+ + +P LA F P R FL+
Sbjct: 466 SFRALRTGPLLFANTGFQTRLFPTAAQNFCSANPLLASFFPVKPLHRGA-----FLAS-- 518
Query: 4526 FFAKGFPHSRKLXXXXXXXXXILWAYRRFMGPDAPQAMFDQYNGYFNPKPWKLRIAQGPT 4347
A P L R+F+GPD+PQ+M D Y F+P W+L + P
Sbjct: 519 LLAASVP-------------VALLLVRQFVGPDSPQSMHDAYADLFHPADWRLIFNRKPL 565
Query: 4346 KCSRGQFLPF--CPRPHSLIQXXXXXXDIFLINAVSIDLQTEVPEHIRSLALSKPLHYEP 4173
S FLP P P L Q I +++I + P SLA P P
Sbjct: 566 FASPEPFLPITTVPAPVDLPQ----------IESIAIPAPSPAPPSPTSLA---PTPIPP 612
Query: 4172 SDDIPDPAPVLIPTKVANKITAISTSGAPQ 4083
DPAP A + + AP+
Sbjct: 613 VTSTLDPAPASASAPAATPPAIAAPAPAPE 642
>ref|NP_115454.1| polyprotein [Maize rayado fino virus]
gi|81964785|sp|Q91TW9.1|POLG_MRFVC RecName: Full=Genome
polyprotein; Includes: RecName: Full=RNA-directed RNA
polymerase; Includes: RecName: Full=Helicase; Includes:
RecName: Full=Methyltransferase; Contains: RecName:
Full=RNA replication protein; Contains: RecName:
Full=Capsid protein CP1; Short=CP1; AltName: Full=Coat
protein gi|14030260|gb|AAK52838.1|AF265566_1 polyprotein
[maize rayado fino virus]
Length = 2027
Score = 1075 bits (2781), Expect = 0.0
Identities = 579/1171 (49%), Positives = 740/1171 (63%), Gaps = 8/1171 (0%)
Frame = -1
Query: 3806 TVNVAIPDDTTPERSTLILD--PSGFGEVSTFAQLYPDDYVLGCAEFFCRKRHHGVSTAP 3633
TV P PE T LD PS G V F +L Y+ F R R+ S+ P
Sbjct: 656 TVFAVTPGPRAPEPDTARLDADPSASGPVMEFRELQKGAYIEPTGAFLTRARNSVSSSIP 715
Query: 3632 FPTMP-CLLDAVGSCLGVTPAELWSTLCHHLPDSLLQNPQITSCGLSTDHLTALSHFYQF 3456
+PT CLL AV G+ LW+ LC +LPDS+L + + + GL+TDH L+ +
Sbjct: 716 YPTRAACLLVAVSQATGLPTRTLWAALCANLPDSVLDDGSLATLGLTTDHFAVLARIFSL 775
Query: 3455 KAFVTSDQEPIPHPYGVDSAPTTIRFSHTTGNPGHFFITSDPGAPPPPKXXXXXXXXXXX 3276
+ S+ + G+ A + HT PGHF + +D + P
Sbjct: 776 RCRFVSEHGDVE--LGLHDATSRFTIRHT---PGHFELVADNFSLPALVGASSVPGADLA 830
Query: 3275 XXXLTTFRLNGELLPFQTVHNYRANVKRAKNLISNMKNGFDGVMATVDPQHPNSAKEKFV 3096
+ +LPF+ VH +R +V+RAKNLISNMKNGFDGVMA +P P SA+E+F+
Sbjct: 831 EACKRFVAPDRTVLPFRDVHIHRTDVRRAKNLISNMKNGFDGVMAQANPLDPKSARERFL 890
Query: 3095 TTDGILDIAKSRSIKLIHIAGFPGCGKSYPIQRLLLTAPRARNFRISVPTAELRHEWKAS 2916
D LDIA R ++LIHIAGF GCGKS+PI LL T P R F+++VPT ELR EWKA
Sbjct: 891 MLDSCLDIAAPRRVRLIHIAGFAGCGKSWPISHLLRT-PAFRVFKLAVPTTELRDEWKAL 949
Query: 2915 MDLEPKNNWRIGTWEXXXXXXXXXLVVDEIYKMPRGYLDLAILMDPHLEMVIVLGDPLQG 2736
MD ++ WR GTWE LV+DE+YKMPRGYLDLAI D ++ VI+LGDP+QG
Sbjct: 950 MDPRDQDKWRFGTWESSLLKTARVLVIDEVYKMPRGYLDLAIHADAAIQFVILLGDPIQG 1009
Query: 2735 EYHSTHPQSSNHKLSSEINHLRPYLDFYCAWTRRCPKLIADFFGVPTTSQEPGFCRPVNH 2556
EYHSTHP SSN +LS E +LRPY+DFYC W+RR P+ +A VPTTS E GF R
Sbjct: 1010 EYHSTHPSSSNARLSPEHRYLRPYVDFYCFWSRRIPQNVARVLDVPTTSTEMGFARYSQQ 1069
Query: 2555 LPMNCPILTNSHSAALTLTEAHSRACTISASQGSTYSSPVVIHLDRHSSQLSNSMALVAL 2376
P + IL ++ +A +L + A TI++SQGST + P +HLD HS +LS+ +LVA+
Sbjct: 1070 FPFSGKILISARDSAKSLADCGYHAVTIASSQGSTIAGPAYVHLDNHSRRLSHQHSLVAI 1129
Query: 2375 TRSTKGVLFSGDQSILQPGPHSAKLFSQLTQFQSSHSPDDRYPIQTHFIEQLRGVTLIST 2196
TRS G++F+GD++ + LFS + D R +++ F L ++
Sbjct: 1130 TRSKSGIVFTGDKAAADGTSSANLLFSAVLL-------DRRLSVRSLFSALLPCCPFVTE 1182
Query: 2195 PLKSRKLVGACPSEVKHSSTVRDFTHHAIRGSTVRDPSYQPSLAHVVRHTSPAIYHSELN 2016
P SR ++ +R Y + R P
Sbjct: 1183 PPTSRAVL-------------------------LRGAGYGIARPLRARDAPP-------- 1209
Query: 2015 RLHPDFKGDAVR-SAVIVCGDGIDHLPRVSPHFIAETRLPYHSDMPSAMPSQCSLSP--P 1845
L PD+ GD + S+ + GDG + P+VS HF+ ETR P H D+PSA Q + P P
Sbjct: 1210 -LGPDYVGDVILDSSAPILGDGSANAPQVSTHFLPETRRPLHFDIPSAR-HQVADHPLAP 1267
Query: 1844 TFSAPVFEPVYPGEDFETLASTFLPAHDPHLREIIFKGERSAQFPYLNQPFDLFLQPQTL 1665
SA EPVYPGE FE+LAS FLP D +E F+GE S QFP+L++PF+L Q +L
Sbjct: 1268 DHSACAIEPVYPGESFESLASLFLPPTDAESKETYFRGEMSNQFPHLDKPFELGAQTSSL 1327
Query: 1664 IAAQHHGQKDSTLLPASIPKRLRFRRNSTPYVISPKDQLLGELLFISLCKAYNRHPSSVE 1485
+A H+ + D TLLPASI KRLRFR + PYVI+P+D++LG LL+ + C+AY+R P VE
Sbjct: 1328 LAPLHNSKHDPTLLPASIGKRLRFRHSEAPYVIAPRDEILGSLLYEAWCRAYHRSPRDVE 1387
Query: 1484 PFDEALFADCINLNEFAQLSSKTQTTIMANASRSDPDWRWSAVRIFSKSQHKTNEASIFG 1305
PFD L+A+CINLNEFAQLSSKTQ TIMANA+RSDPDWRWSAVRIF+K+QHK NE S+FG
Sbjct: 1388 PFDPDLYAECINLNEFAQLSSKTQATIMANANRSDPDWRWSAVRIFAKTQHKVNEGSLFG 1447
Query: 1304 SWKACQTLALMHDAVVLLLGPVKKYQRLFDNRDRPANIYVHASHTPFQMSDWCRENLSSC 1125
SWKACQTLALMHDAVVLLLGPVKKYQR FD RDRP+ +YVHA HTPF+M+DWCR +L+
Sbjct: 1448 SWKACQTLALMHDAVVLLLGPVKKYQRFFDQRDRPSTLYVHAGHTPFEMADWCRAHLTPA 1507
Query: 1124 EHVANDYTAFDQSQHGEAVVLEIKKMRRLSIPEPLIQLHAYLKTNVTTQFGPLTCMRLTG 945
+ANDYTAFDQSQHGEAVV E KM RLSIP L+ LH YLKTNV+TQFGPLTCMRLTG
Sbjct: 1508 VKLANDYTAFDQSQHGEAVVFERYKMNRLSIPAELVDLHVYLKTNVSTQFGPLTCMRLTG 1567
Query: 944 EPGTYDDNTDYNLAVIHSQYLMASIPHMVSGDDSLIDRQPLPNPLWITIGPMLHLRFKLE 765
EPGTYDDNTDYN+AV+H +Y + S P MVSGDDSL+D +P W I PML L FK E
Sbjct: 1568 EPGTYDDNTDYNIAVLHLEYAVGSTPLMVSGDDSLLDSEPPVRDQWSAIAPMLALTFKKE 1627
Query: 764 VTRYPLFCGYLVGPSGAVRSPITLFAKSLMALDDGSLDDKLASYLTEFSVGHSLGQEMWN 585
RY FCGY VG +GAVRSP LFAK ++A+DDGS+ DKL +YLTEF+VGHS G W
Sbjct: 1628 RGRYATFCGYYVGFTGAVRSPPALFAKLMIAVDDGSISDKLIAYLTEFTVGHSSGDAFWT 1687
Query: 584 LIPVEQVHYQAALFDFFCRKASREQKLVLKIGEVPDTIISTILSSARAIARPLYAYLSSS 405
++PVE V YQ+A FDFFCR+A + K++L++GE P++++S + + +YA ++SS
Sbjct: 1688 ILPVEAVPYQSACFDFFCRRAPAQAKVMLRLGEAPESLLSLAFEGLKWASHSVYALMNSS 1747
Query: 404 ARKLLLKGSKTYR--PFDTEESLQFEGVLQH 318
R+ LL S+ R P D E S Q +G L H
Sbjct: 1748 HRRQLLHSSRRPRSLPEDPEVS-QLQGELLH 1777
Score = 440 bits (1132), Expect = e-120
Identities = 248/557 (44%), Positives = 315/557 (56%), Gaps = 6/557 (1%)
Frame = -1
Query: 5948 ESLSNTIHRDTVTSPLVEAVADPLRDSLEKYPYAVSPSLTSFLSKRGINISGYGAKTHPH 5769
ESL+ T HRDT+T+P+VE++A PLR SLE+YP+++ SFL G++ISG+G HPH
Sbjct: 15 ESLTPTTHRDTITAPIVESLATPLRRSLERYPWSIPKEFHSFLHTCGVDISGFGHAAHPH 74
Query: 5768 PAHKNIENYILQDVWPNLIRNQSSVLFMKPSKFRKLEQKDSNFHELINYRLTPQDTTRYP 5589
P HK IE ++L DVWPN R S V+F+KP KF KL+ + NF LINYRL P+DTTRYP
Sbjct: 75 PVHKTIETHLLLDVWPNYARGPSDVMFIKPEKFAKLQSRQPNFAHLINYRLVPKDTTRYP 134
Query: 5588 SSSTTLPAHSTVFMHDALMYYTPGDIADLFLSAPHLTQLYATLVVPPESSFTDTSFFPEL 5409
S+ST LP TVFMHDALMYYTPG IADLF P L ++YA++VVP ESSFT S PE+
Sbjct: 135 STSTNLPDCETVFMHDALMYYTPGQIADLFFLCPQLQKIYASVVVPAESSFTHLSLHPEI 194
Query: 5408 YNFHFHDTDLVYELEGNPSHHYIQPKSALDWLRTSTIRCSDLTLSISILESIGPVHHLLI 5229
Y F F +DLVYE EGNP+ +Y QP+SALDWL+T+ S+++L+S GPVH LLI
Sbjct: 195 YRFRFQGSDLVYEPEGNPAANYTQPRSALDWLQTTGFTVGHEFFSVTLLDSFGPVHSLLI 254
Query: 5228 QRGLAPKHRENTTRDFDTPDCFLLPAPTSLSQNVRDRLVPLAAYHSLRAYVMAVRTLRTT 5049
QRG P + F PD LPAP SL Q++R RLVP Y +L YV AVR LR T
Sbjct: 255 QRGRPPVFQAEDIASFRVPDAVALPAPASLHQDLRHRLVPRKVYDALFNYVRAVR-LRVT 313
Query: 5048 DPAGFVRTQSTKPEFAWVTAEAWDSLQNFALLTCNQRPAVSYLTFASSFARIKHWXXXXX 4869
DPAGFVRTQ KPE++WVT+ AWD+LQ+FAL T RP S+ F S FAR+ HW
Sbjct: 314 DPAGFVRTQVGKPEYSWVTSSAWDNLQHFALQTAAVRPNTSHPLFQSPFARLSHWLRTHT 373
Query: 4868 XXXXXXXXXXXXAVSFTTVKVAHYCSTRQIDSLILFGKQIVR----PSCPLNSPFSLHQY 4701
++ T D L LFG I+ P P + P +
Sbjct: 374 WALWCLASPSASVSAWATASALGRLLPLHTDRLRLFGFDIIGRRFWPRLPFHGPEPRFLW 433
Query: 4700 FSRTAQLPPSLSTQLPRFELVTSPRIITKWSPCLARFLLSTPFFRTLTTQLNFLSKKCFF 4521
+ A PP L FE + + SP +PF+ L + S +
Sbjct: 434 ETHPACRPPVLFAD-SAFECQILAGLANRCSP--------SPFWSRLFPTASPPSWVAYS 484
Query: 4520 AKGFPHSRKLXXXXXXXXXILWAYRRFMGPDAPQAMFDQYNGYFNPKPWKLRIAQGPTKC 4341
A A R F GPD+PQA+ DQY+ F+P PW L + + +
Sbjct: 485 ALAL----------AAVPLAALALRWFYGPDSPQALHDQYHATFHPDPWTLDLPRRLRRF 534
Query: 4340 SRGQFL--PFCPRPHSL 4296
R F+ P P SL
Sbjct: 535 ERESFMRTGSAPLPQSL 551
>ref|YP_004464920.1| polyprotein [Switchgrass mosaic virus] gi|332672309|gb|AEE25899.3|
polyprotein [Switchgrass mosaic virus]
Length = 2061
Score = 1069 bits (2764), Expect = 0.0
Identities = 575/1171 (49%), Positives = 747/1171 (63%), Gaps = 8/1171 (0%)
Frame = -1
Query: 3806 TVNVAIPDDTTPERST--LILDPSGFGEVSTFAQLYPDDYVLGCAEFFCRKRHHGVSTAP 3633
TV IP PE + L +DP+ G + F L P Y+ F R R+ ST
Sbjct: 687 TVFAQIPTPREPESALARLEVDPTASGPIMEFRDLQPGLYLGTTGSFLTRARNSVSSTIQ 746
Query: 3632 FPTMP-CLLDAVGSCLGVTPAELWSTLCHHLPDSLLQNPQITSCGLSTDHLTALSHFYQF 3456
+P CLL AV + + A LW+ L +LPDS+L + + GL+TDH L+ +
Sbjct: 747 YPARAACLLVAVRNATSLPTATLWAALAANLPDSILDDGSLVRLGLTTDHFAVLARIFSL 806
Query: 3455 KAFVTSDQEPIPHPYGVDSAPTTIRFSHTTGNPGHFFITSDPGAPPPPKXXXXXXXXXXX 3276
+ SD I GV A + HT PGHF + +D + P
Sbjct: 807 RCRFVSDH--IDVELGVADATSRFTIRHT---PGHFELVADDYSLPALVGASTIPGADLA 861
Query: 3275 XXXLTTFRLNGELLPFQTVHNYRANVKRAKNLISNMKNGFDGVMATVDPQHPNSAKEKFV 3096
+ +LPF+ VH +R +VKRAKNLISNMKNGFDGVMA +P P SA+E+F+
Sbjct: 862 ESCKRFVASDRTVLPFRDVHIHRTSVKRAKNLISNMKNGFDGVMAQANPLDPKSARERFL 921
Query: 3095 TTDGILDIAKSRSIKLIHIAGFPGCGKSYPIQRLLLTAPRARNFRISVPTAELRHEWKAS 2916
D LDIA R ++LIHIAGF GCGKS+P+ +LL T P R F+++VPT ELR EWK
Sbjct: 922 MLDSCLDIAAPRVVRLIHIAGFAGCGKSWPVAQLLKT-PAFRTFKLAVPTTELRDEWKGL 980
Query: 2915 MDLEPKNNWRIGTWEXXXXXXXXXLVVDEIYKMPRGYLDLAILMDPHLEMVIVLGDPLQG 2736
M+ ++ WR GTWE LV+DE+YKMPRGYLDLAI D ++ VI+LGDP+QG
Sbjct: 981 MEPRDQDKWRFGTWESSLLKSARTLVIDEVYKMPRGYLDLAIHADASIQFVILLGDPIQG 1040
Query: 2735 EYHSTHPQSSNHKLSSEINHLRPYLDFYCAWTRRCPKLIADFFGVPTTSQEPGFCRPVNH 2556
EYHSTHP SSN +LS E +LRPY+DFYC W+RR P+ +A GVP+TS+ G+ R +
Sbjct: 1041 EYHSTHPSSSNARLSPEHVYLRPYIDFYCFWSRRIPQYVATILGVPSTSKVSGYARHSSQ 1100
Query: 2555 LPMNCPILTNSHSAALTLTEAHSRACTISASQGSTYSSPVVIHLDRHSSQLSNSMALVAL 2376
P+N IL ++ ++A +L + +A TI++SQGST + PV IHLD H+ +LS+ +LVA+
Sbjct: 1101 FPLNGKILISAMTSAKSLVDCGYQAITIASSQGSTVNGPVHIHLDNHARRLSHQHSLVAI 1160
Query: 2375 TRSTKGVLFSGDQSILQPGPHSAKLFSQLTQFQSSHSPDDRYPIQTHFIEQLRGVTLIST 2196
TRS G++F+GD S+ S LFS + +PI +L S
Sbjct: 1161 TRSRAGLVFTGDPSVADGTSSSNLLFSAVLM---------NHPISVR--------SLFSA 1203
Query: 2195 PLKSRKLVGACPSEVKHSSTVRDFTHHAIRGSTVRDPSYQPSLAHVVRHTSPAIYHSELN 2016
L V + P+ R +R Y ++P + E
Sbjct: 1204 LLPRCPFVESPPTS---------------RSVLLRGAGYG---------SAPPLRPRESP 1239
Query: 2015 RLHPDFKGDAVRS-AVIVCGDGIDHLPRVSPHFIAETRLPYHSDMPSAMPSQCSLSP--P 1845
+ PDF+GD + + GDG + P+VS HF+ E+R P H D+PSA Q + P P
Sbjct: 1240 PMRPDFQGDVIADLSAPFLGDGSSNAPQVSTHFLPESRRPLHFDVPSAR-HQVADHPLKP 1298
Query: 1844 TFSAPVFEPVYPGEDFETLASTFLPAHDPHLREIIFKGERSAQFPYLNQPFDLFLQPQTL 1665
SA EPVYPGE FE LA+ FLP D +EI F+GE S QFP+L++PF++ QP +L
Sbjct: 1299 DHSACAIEPVYPGESFEQLAALFLPPTDAESKEIRFRGELSNQFPHLDKPFEISAQPSSL 1358
Query: 1664 IAAQHHGQKDSTLLPASIPKRLRFRRNSTPYVISPKDQLLGELLFISLCKAYNRHPSSVE 1485
+A H+ + D TLLPASI KRLRFR N + Y IS +D++LG LL+ + C+AY R P +E
Sbjct: 1359 LAPVHNSKHDPTLLPASIAKRLRFRHNDSAYTISARDEILGGLLYEAWCRAYRRSPLDIE 1418
Query: 1484 PFDEALFADCINLNEFAQLSSKTQTTIMANASRSDPDWRWSAVRIFSKSQHKTNEASIFG 1305
PFD L+A+CINLNEFAQLSSKTQ TIMANA+RSDPDWRWSAVRIF+K+QHK NE S+FG
Sbjct: 1419 PFDPVLYAECINLNEFAQLSSKTQATIMANANRSDPDWRWSAVRIFAKTQHKVNEGSLFG 1478
Query: 1304 SWKACQTLALMHDAVVLLLGPVKKYQRLFDNRDRPANIYVHASHTPFQMSDWCRENLSSC 1125
SWKACQTLALMHDAVVLLLGPVKKYQR+FD RDRP+++YVHA HTPF+M++WC+++L+
Sbjct: 1479 SWKACQTLALMHDAVVLLLGPVKKYQRVFDQRDRPSHLYVHAGHTPFEMAEWCQQHLTPA 1538
Query: 1124 EHVANDYTAFDQSQHGEAVVLEIKKMRRLSIPEPLIQLHAYLKTNVTTQFGPLTCMRLTG 945
+ANDYTAFDQSQHGEAVV E KM RLSIP+ LI LH YLKTNV+TQFGPLTCMRLTG
Sbjct: 1539 IKLANDYTAFDQSQHGEAVVFERFKMSRLSIPQELIDLHVYLKTNVSTQFGPLTCMRLTG 1598
Query: 944 EPGTYDDNTDYNLAVIHSQYLMASIPHMVSGDDSLIDRQPLPNPLWITIGPMLHLRFKLE 765
EPGTYDDNTDYN+AV+H +Y + S P MVSGDDSL+D +P W + PML L FK E
Sbjct: 1599 EPGTYDDNTDYNIAVLHLEYAVGSTPLMVSGDDSLLDSEPPVRDQWAAVEPMLALTFKKE 1658
Query: 764 VTRYPLFCGYLVGPSGAVRSPITLFAKSLMALDDGSLDDKLASYLTEFSVGHSLGQEMWN 585
RY FCGY VG +GAVRSP LFAK ++A+DD S+DDKL +YLTEF+VGHSLG W
Sbjct: 1659 RGRYATFCGYYVGFTGAVRSPPALFAKLMIAVDDESIDDKLIAYLTEFTVGHSLGDAFWT 1718
Query: 584 LIPVEQVHYQAALFDFFCRKASREQKLVLKIGEVPDTIISTILSSARAIARPLYAYLSSS 405
++PVE V YQ+A FDFFCR+A + K++L++GE P++++S + + +YA ++SS
Sbjct: 1719 ILPVETVPYQSACFDFFCRRAPAQAKVMLRLGEAPESLLSMAFQGLKWASHSVYALMNSS 1778
Query: 404 ARKLLLKGSKTYR--PFDTEESLQFEGVLQH 318
R+ LL S+ R P D E S Q +G L H
Sbjct: 1779 HRRQLLHSSRRPRSLPEDPEVS-QLQGELLH 1808
Score = 428 bits (1101), Expect = e-116
Identities = 240/548 (43%), Positives = 310/548 (56%), Gaps = 6/548 (1%)
Frame = -1
Query: 5948 ESLSNTIHRDTVTSPLVEAVADPLRDSLEKYPYAVSPSLTSFLSKRGINISGYGAKTHPH 5769
ESL+ T HRDT+T+P+VE++A PLR SLE+YP+++ FL GI+ISG+G HPH
Sbjct: 15 ESLTPTTHRDTITAPIVESLATPLRRSLERYPWSIPKEFHPFLHTCGIDISGFGHAAHPH 74
Query: 5768 PAHKNIENYILQDVWPNLIRNQSSVLFMKPSKFRKLEQKDSNFHELINYRLTPQDTTRYP 5589
P HK IE ++L DVWPN R S V+F+KP KF KL+ + +NF LINYRL P+DTTRYP
Sbjct: 75 PVHKTIETHLLMDVWPNYARGPSDVMFIKPEKFAKLQTRQANFSHLINYRLVPKDTTRYP 134
Query: 5588 SSSTTLPAHSTVFMHDALMYYTPGDIADLFLSAPHLTQLYATLVVPPESSFTDTSFFPEL 5409
++ST LP TVFMHDALMYY+PG IADLF P L +LYA+LVVP ESSFT S PEL
Sbjct: 135 TTSTDLPDCETVFMHDALMYYSPGQIADLFHQCPQLQKLYASLVVPAESSFTHLSLHPEL 194
Query: 5408 YNFHFHDTDLVYELEGNPSHHYIQPKSALDWLRTSTIRCSDLTLSISILESIGPVHHLLI 5229
Y F F DLVYE EGNP+ +Y QP+ AL+WL+T+ ++++L+S GPVH LLI
Sbjct: 195 YRFRFQGDDLVYEPEGNPAANYTQPRRALEWLQTTGFTSGHEFFTVTLLDSFGPVHSLLI 254
Query: 5228 QRGLAPKHRENTTRDFDTPDCFLLPAPTSLSQNVRDRLVPLAAYHSLRAYVMAVRTLRTT 5049
QRG P + F PD LPAP SL Q++R RLVP Y +L YV AVRTLR T
Sbjct: 255 QRGRPPVFSAEDSVSFRVPDAIALPAPASLHQDLRHRLVPRRVYDALFNYVRAVRTLRVT 314
Query: 5048 DPAGFVRTQSTKPEFAWVTAEAWDSLQNFALLTCNQRPAVSYLTFASSFARIKHWXXXXX 4869
DPA FVRTQ +KPE++WVT+ AWD+LQ+FAL T RP S+ F S AR+ HW
Sbjct: 315 DPADFVRTQVSKPEYSWVTSSAWDNLQHFALQTAAVRPNTSHPLFQSPLARVAHWLRTHT 374
Query: 4868 XXXXXXXXXXXXAVSFTTVKVAHYCSTRQIDSLILFGKQIVR----PSCPLNSPFSLHQY 4701
++ + D L LFG ++ P P SP + +
Sbjct: 375 WALWCLASPAASLTAWLAASRFGRLTVLHTDRLRLFGCDLIGRRFWPILPFQSPEARFLW 434
Query: 4700 FSRTAQLPPSLSTQLPRFELVTSPRIITKWSPCLARFLLSTPFFRTLTTQLNFLSKKCFF 4521
+ +A P +L FE + + SP +P L F
Sbjct: 435 ETHSACKPYTLFAG-SAFECRVLGALAHRCSP--------SPTLSRL------------F 473
Query: 4520 AKGFPHSRKLXXXXXXXXXILWA--YRRFMGPDAPQAMFDQYNGYFNPKPWKLRIAQGPT 4347
+ P + L A R F+GPD+PQA+ DQY+ F+P W L + +
Sbjct: 474 PEAQPARWVVFGSLALAAVPLTALLVRWFLGPDSPQALHDQYHATFHPDSWSLDLPRRLR 533
Query: 4346 KCSRGQFL 4323
C R FL
Sbjct: 534 SCVREPFL 541
>gb|ACV83739.1| replicase-associated polyprotein [Grapevine virus Q]
Length = 2081
Score = 1055 bits (2728), Expect = 0.0
Identities = 569/1199 (47%), Positives = 741/1199 (61%), Gaps = 26/1199 (2%)
Frame = -1
Query: 3788 PDDTTPERSTLILDPSGFGEVSTFAQLYPDDYVLGCAEFFCRKRHHGVSTAPFPTMPCLL 3609
P PE S L D S GEVS F L+P D++ A F R+R +S A +P M CLL
Sbjct: 741 PGLVEPEHSPLAADSSATGEVSEFFNLHPADWIAPTATFLARRRGETISGAKYPAMDCLL 800
Query: 3608 DAVGSCLGVTPAELWSTLCHHLPDSLLQNPQITSCGLSTDHLTALSHFYQFKAFVTSDQE 3429
AV + + LW T+C + PDS+L+ I GLST H AL+ ++ +A S
Sbjct: 801 AAVSAGANIPKDALWKTICSYFPDSMLREEDIAKHGLSTHHFAALAREHRLQATFHSAGN 860
Query: 3428 PIPHPYGVDSAPTTIRFSHTTGN---PGHFFITSDPGAPPPPKXXXXXXXXXXXXXXLTT 3258
GV+ + HT + PGHF + +D P
Sbjct: 861 QFV--LGVEHPSVSFHIDHTPESATAPGHFSLRADERQHSP---RLLGGRAADLVHAALK 915
Query: 3257 FRLNGELLPFQTVHNYRANVKRAKNLISNMKNGFDGVMATVDPQHPNSAKEKFVTTDGIL 3078
F++ +LPFQ H+Y NV RAKNLISNMKNGFDGV+A +DP H N ++++ ++ DG +
Sbjct: 916 FKVGSAVLPFQQAHDYTTNVARAKNLISNMKNGFDGVLANIDPAHTNESRDRLLSLDGAM 975
Query: 3077 DIAKSRSIKLIHIAGFPGCGKSYPIQRLLLTAPRARNFRISVPTAELRHEWKASMDLEPK 2898
DIA R +KLIHIAGFPGCGKSYPI +LL + ++F+I+VPT ELR+EWK + ++P+
Sbjct: 976 DIAAPRDVKLIHIAGFPGCGKSYPIAQLLKSRA-FKHFKIAVPTVELRNEWKGVLKVKPQ 1034
Query: 2897 NNWRIGTWEXXXXXXXXXLVVDEIYKMPRGYLDLAILMDPHLEMVIVLGDPLQGEYHSTH 2718
+NWRI TWE LV+DEIYKMPRGYLDLAI DP +++VI LGDPLQG YHSTH
Sbjct: 1035 DNWRISTWESSLLKSARILVIDEIYKMPRGYLDLAIHADPTIDLVIALGDPLQGVYHSTH 1094
Query: 2717 PQSSNHKLSSEINHLRPYLDFYCAWTRRCPKLIADFFGVPTTSQEPGFCRPVNHLPMNCP 2538
SSNH+LSSE+ HL+PY+D+YC W+ R P+ I FFG+ +TS PGF ++P N
Sbjct: 1095 SDSSNHRLSSEVKHLQPYMDYYCLWSHRVPQDIGTFFGIKSTSTVPGFKSYQANIPGNLR 1154
Query: 2537 ILTNSHSAALTLTEAHSRACTISASQGSTYSSPVVIHLDRHSSQLSNSMALVALTRSTKG 2358
L NS SAA L + + TI++SQGSTYS+P IHLDRHS LS++ +LVALTRS G
Sbjct: 1155 QLANSQSAAKVLNQCGFSSVTIASSQGSTYSAPACIHLDRHSMSLSHAHSLVALTRSKSG 1214
Query: 2357 VLFSGDQSILQPGPHSAKLFSQLTQFQSSHSPDDRYPIQTHFIEQLRGVTLISTPLKSRK 2178
V+F+GD+ +L+ P LFS S+ + + ++ F + ++ PLK R
Sbjct: 1215 VIFTGDKRVLE-APGGNLLFS-------SYFQEKKVDLRALFPTEFPCRPILLEPLKRRP 1266
Query: 2177 LVGACPSEVKHSSTVRDFTHHAIRGSTVRDPSYQPSLAHVVRHTSPAIYHSELNRLHPDF 1998
D T A P + E +P+
Sbjct: 1267 T---------------DLTGGA-----------------------PFPFRDEARVFNPER 1288
Query: 1997 KGDAVRSAVIVCGDGIDHLPRVSPHFIAETRLPYHSDMPSAMPSQCSLSPPTFSAPVF-E 1821
+ D A +VCGDG + P+VS HF+ ETR P H D+PSA P + P F E
Sbjct: 1289 RDDVFVEAAVVCGDGSSNAPQVSTHFLPETRRPLHFDLPSAKPEFAAHEAPAPLTDTFIE 1348
Query: 1820 PVYPGEDFETLASTFLPAHDPHLREIIFKGERSAQFPYLNQPFDLFLQPQTLIAAQHHGQ 1641
PVYPGE FE +A+ FLPAHDP ++EI+FK +RS QFP+++QPF + QP +L AA HH +
Sbjct: 1349 PVYPGETFENIAAHFLPAHDPEVKEILFKDQRSNQFPFIDQPFHVGAQPASLCAAVHHSK 1408
Query: 1640 KDSTLLPASIPKRLRFRRNSTPYVISPKDQLLGELLFISLCKAYNRHPSSVEPFDEALFA 1461
KD TLL ASI KRLRFR + PY I+ KD++LG +LF + C+A R P+ PFDEALFA
Sbjct: 1409 KDPTLLAASIEKRLRFRASDAPYQITAKDEILGSILFEAHCRAMRRDPNVRVPFDEALFA 1468
Query: 1460 DCINLNEFAQLSSKTQTTIMANASRSDPDWRWSAVRIFSKSQHKTNEASIFGSWKACQTL 1281
+CI LNEFAQL+SKTQ IMAN RSDPDWR++AVRIF+K+QHK N S+FG WKACQTL
Sbjct: 1469 ECIALNEFAQLTSKTQAVIMANHERSDPDWRYTAVRIFAKNQHKVNSGSLFGPWKACQTL 1528
Query: 1280 ALMHDAVVLLLGPVKKYQRLFDNRDRPANIYVHASHTPFQMSDWCR-------------- 1143
ALMHDAV+LL GPVKKYQ + D RDRP +I+++A TP +MS+WC+
Sbjct: 1529 ALMHDAVILLFGPVKKYQLIHDERDRPEHIFIYAGRTPQEMSEWCQKFLTPRSASSPVPV 1588
Query: 1142 -----ENLSSC--EHVANDYTAFDQSQHGEAVVLEIKKMRRLSIPEPLIQLHAYLKTNVT 984
++L C VANDYTAFDQSQHGEA VLE KM R++IPE LI LH +KT++T
Sbjct: 1589 MVSGDDSLIGCHPHFVANDYTAFDQSQHGEAAVLERLKMERVNIPEWLITLHIMIKTHIT 1648
Query: 983 TQFGPLTCMRLTGEPGTYDDNTDYNLAVIHSQYLMASIPHMVSGDDSLIDRQPLPNPLWI 804
TQFGPLTCMRLTGEPGTY DN+DYNLAVI +Y M+ + NPLW
Sbjct: 1649 TQFGPLTCMRLTGEPGTYFDNSDYNLAVIFLEYSMSG-------------QWLSENPLWP 1695
Query: 803 TIGPMLHLRFKLEVTRYPLFCGYLVGPSGAVRSPITLFAKSLMALDDGSLDDKLASYLTE 624
I P+L LRFK E TRY FCGY VG +GAVR P LFAK L+A++D S+ DK+ASY TE
Sbjct: 1696 AIKPLLALRFKKEKTRYGNFCGYYVGAAGAVRMPRALFAKILIAVEDASIADKMASYATE 1755
Query: 623 FSVGHSLGQEMWNLIPVEQVHYQAALFDFFCRKASREQKLVLKIGEVPDTIISTILSSAR 444
F++GHSLG +W+L+PVE+V YQ+A+FDFFCR A RE KL+ K+G V +++ + A
Sbjct: 1756 FAIGHSLGDALWSLLPVEEVVYQSAVFDFFCRNAPRELKLLFKLGPVERSVVEAVQEFAT 1815
Query: 443 AIARPLYAYLSSSARKLLL-KGSKTYRPFDTEESLQFEGVLQHAVSIATPPPRLTGGSL 270
+ Y +L+S+ RK+LL + + + P D E Q +G L + S+ P LTGG L
Sbjct: 1816 WASYAFYRFLNSAQRKVLLTRSPQLHFPGDAPEVSQLQGELLQSFSMMQPTFPLTGGLL 1874
Score = 402 bits (1032), Expect = e-108
Identities = 232/556 (41%), Positives = 314/556 (56%), Gaps = 4/556 (0%)
Frame = -1
Query: 5954 LFESLSNTIHRDTVTSPLVEAVADPLRDSLEKYPYAVSPSLTSFLSKRGINISGYGAKTH 5775
L E L+ T HRDTV SP++EAVA PLR S+++YPY V L + GI SG+G K H
Sbjct: 84 LVEMLAPTTHRDTVASPILEAVAGPLRTSIQRYPYEVPAHAVPVLQRFGIEASGFGFKAH 143
Query: 5774 PHPAHKNIENYILQDVWPNLIRNQSSVLFMKPSKFRKLEQKDSNFHELINYRLTPQDTTR 5595
PHP HK IE ++L + W NL R+ S+VLFMK SKF KL+ +++NF L NY LT +DTTR
Sbjct: 144 PHPVHKTIEIHLLFEHWLNLCRSPSAVLFMKQSKFEKLQHENANFEALANYNLTARDTTR 203
Query: 5594 YPSSSTTLPAHSTVFMHDALMYYTPGDIADLFLSAPHLTQLYATLVVPPESSFTDTSFFP 5415
Y + P + FMHDAL Y++ +A F PHL +L+A+LVVPPES FT+ S FP
Sbjct: 204 YEQVAVAPPTQAVWFMHDALQYFSLSQVAAFFADCPHLEKLFASLVVPPESDFTNLSLFP 263
Query: 5414 ELYNFHFHDTDLVYELEGNPSHHYIQPKSALDWLRTSTIRCSDLTLSISILESIGPVHHL 5235
E+Y + F + L Y+LEGNP H Y QP+ AL+WL+T+TIRC +L L+++ LES GPVH L
Sbjct: 264 EIYRYSFAGSRLNYQLEGNPGHSYSQPREALEWLKTTTIRCGNLYLTVTKLESWGPVHSL 323
Query: 5234 LIQRGLAPKHRENTTRDFDTPDCFLLPAPTSLSQNVRDRLVPLAAYHSLRAYVMAVRTLR 5055
LIQRG H E+ F PD LP +L Q++R RLVP Y +L YV AVRTLR
Sbjct: 324 LIQRGKPSVHLEHDEVSFVGPDAVALPEAAALRQDLRHRLVPRTVYDALFVYVRAVRTLR 383
Query: 5054 TTDPAGFVRTQSTKPEFAWVTAEAWDSLQNFALLTCNQRPAVSYLTFASSFARIKHWXXX 4875
TTDP GFVRTQS K E++WVT+ AWD+LQ+F T R + F S+FA+ ++W
Sbjct: 384 TTDPVGFVRTQSNKAEYSWVTSAAWDNLQHFVTETAAHRVPNRHFFFNSTFAKCRYWCSQ 443
Query: 4874 XXXXXXXXXXXXXXAVS-FTTVKVAHYCSTRQIDSLILFGKQIVRPSCPLNSPFSLHQYF 4698
++ FT K+A S+R + +L +F +V P +P +
Sbjct: 444 HKLGLLTVTTPPACGLTLFTGAKLASAMSSR-LTALAVFHHWVVPPPTLFFTPKA----- 497
Query: 4697 SRTAQLPPSLSTQLPRFELVTSPRIITKWSPCLARFLLSTPFFRTLTTQLNFLS--KKCF 4524
P L+ QL R P+ + P L P + LNF S ++ F
Sbjct: 498 -------PLLAIQLTRL-----PQPLFSSVP-----FLHKPLGKLSLRLLNFDSFLRRFF 540
Query: 4523 FAKGFPHSRKLXXXXXXXXXILW-AYRRFMGPDAPQAMFDQYNGYFNPKPWKLRIAQGPT 4347
P +L +W A R F+GPDAPQA+ D Y +F+P W+L + P
Sbjct: 541 PDAPIPTWARLLTVAIALSPAVWLAIRHFIGPDAPQALNDHYVRFFHPDRWQLTFERQPR 600
Query: 4346 KCSRGQFLPFCPRPHS 4299
+ + P+ P P +
Sbjct: 601 FVALDRTFPW-PLPQA 615
>ref|YP_002756536.1| putative 230 kDa polyprotein [Grapevine Syrah virus 1]
gi|225691150|gb|ACO06249.1| putative 230 kDa polyprotein
[Grapevine Syrah virus 1]
Length = 2081
Score = 1053 bits (2723), Expect = 0.0
Identities = 567/1199 (47%), Positives = 739/1199 (61%), Gaps = 26/1199 (2%)
Frame = -1
Query: 3788 PDDTTPERSTLILDPSGFGEVSTFAQLYPDDYVLGCAEFFCRKRHHGVSTAPFPTMPCLL 3609
P PE S L D S GEVS F L+P D++ A F R+R +S A +P M CLL
Sbjct: 741 PGLVEPEHSPLAADSSATGEVSEFFNLHPADWIAPTATFLARRRGETISGAKYPAMDCLL 800
Query: 3608 DAVGSCLGVTPAELWSTLCHHLPDSLLQNPQITSCGLSTDHLTALSHFYQFKAFVTSDQE 3429
AV + + LW T+C + PDS+L+ I GLST H AL+ ++ +A S
Sbjct: 801 AAVSAGANIPKDALWKTICSYFPDSMLREEDIAKHGLSTHHFAALAREHRLQATFHSAGN 860
Query: 3428 PIPHPYGVDSAPTTIRFSHTTGN---PGHFFITSDPGAPPPPKXXXXXXXXXXXXXXLTT 3258
GV+ + HT + PGHF + +D P
Sbjct: 861 QFV--LGVEHPSVSFHIDHTPESATAPGHFSLRADERQHSP---RLLGGRAADLVHAALK 915
Query: 3257 FRLNGELLPFQTVHNYRANVKRAKNLISNMKNGFDGVMATVDPQHPNSAKEKFVTTDGIL 3078
F++ +LPFQ H+Y NV RAKNLISNMKNGFDGV+A +DP H N ++++ ++ DG +
Sbjct: 916 FKVGSAVLPFQQAHDYTTNVARAKNLISNMKNGFDGVLANIDPAHTNESRDRLLSLDGAM 975
Query: 3077 DIAKSRSIKLIHIAGFPGCGKSYPIQRLLLTAPRARNFRISVPTAELRHEWKASMDLEPK 2898
DIA R +KLIHIAGFPGCGKSYPI +LL + ++F+I+VPT ELR+EWK + ++P+
Sbjct: 976 DIAAPRDVKLIHIAGFPGCGKSYPIAQLLKSRA-FKHFKIAVPTVELRNEWKGVLKVKPQ 1034
Query: 2897 NNWRIGTWEXXXXXXXXXLVVDEIYKMPRGYLDLAILMDPHLEMVIVLGDPLQGEYHSTH 2718
+NWRI TWE LV+DEIYKMPRGYLDLAI DP +++VI LGDPLQG YHSTH
Sbjct: 1035 DNWRISTWESSLLKSARILVIDEIYKMPRGYLDLAIHADPTIDLVIALGDPLQGVYHSTH 1094
Query: 2717 PQSSNHKLSSEINHLRPYLDFYCAWTRRCPKLIADFFGVPTTSQEPGFCRPVNHLPMNCP 2538
SSNH+LSSE+ HL+PY+D+YC W+ R P+ I FFG+ +TS PGF ++P N
Sbjct: 1095 SDSSNHRLSSEVKHLQPYMDYYCLWSHRVPQDIGTFFGIKSTSTVPGFKSYQANIPSNLR 1154
Query: 2537 ILTNSHSAALTLTEAHSRACTISASQGSTYSSPVVIHLDRHSSQLSNSMALVALTRSTKG 2358
L NS SAA L + + TI++SQGSTYS+P IHLDRHS LS++ +LVALTRS G
Sbjct: 1155 QLANSQSAAKVLNQCGFSSVTIASSQGSTYSAPACIHLDRHSMSLSHAHSLVALTRSKSG 1214
Query: 2357 VLFSGDQSILQPGPHSAKLFSQLTQFQSSHSPDDRYPIQTHFIEQLRGVTLISTPLKSRK 2178
V+F+GD+ +L+ P LFS S+ + + ++ F + ++ PLK R
Sbjct: 1215 VIFTGDKRVLE-APGGNLLFS-------SYFQEKKVDLRALFPTEFPCCPILLEPLKRRP 1266
Query: 2177 LVGACPSEVKHSSTVRDFTHHAIRGSTVRDPSYQPSLAHVVRHTSPAIYHSELNRLHPDF 1998
D T A P + E +P+
Sbjct: 1267 T---------------DLTGGA-----------------------PFPFRDEARVFNPER 1288
Query: 1997 KGDAVRSAVIVCGDGIDHLPRVSPHFIAETRLPYHSDMPSAMPSQCSLSPPTFSAPVF-E 1821
+ D A +VCGDG + P+VS HF+ ETR P H D+PSA P + P F E
Sbjct: 1289 RDDVFVEAAVVCGDGSSNAPQVSTHFLPETRRPLHFDLPSAKPEFAAHEAPAPLTDTFIE 1348
Query: 1820 PVYPGEDFETLASTFLPAHDPHLREIIFKGERSAQFPYLNQPFDLFLQPQTLIAAQHHGQ 1641
PVYPGE FE +A+ FLPAHDP ++EI+FK +RS QFP+++QPF + QP +L AA HH +
Sbjct: 1349 PVYPGETFENIAAHFLPAHDPEVKEILFKDQRSNQFPFIDQPFHVGAQPASLCAAVHHSK 1408
Query: 1640 KDSTLLPASIPKRLRFRRNSTPYVISPKDQLLGELLFISLCKAYNRHPSSVEPFDEALFA 1461
KD TLL ASI KRLRFR + PY I+ KD++LG +LF + C+A R P+ PFDEALFA
Sbjct: 1409 KDPTLLAASIEKRLRFRASDAPYQITAKDEILGSMLFEAHCRAMRRDPNVRVPFDEALFA 1468
Query: 1460 DCINLNEFAQLSSKTQTTIMANASRSDPDWRWSAVRIFSKSQHKTNEASIFGSWKACQTL 1281
+CI LNEFAQL+SKTQ IMAN RSDPDWR++AVRIF+K+QHK N S+FG WKACQTL
Sbjct: 1469 ECIALNEFAQLTSKTQAVIMANHERSDPDWRYTAVRIFAKNQHKVNSGSLFGPWKACQTL 1528
Query: 1280 ALMHDAVVLLLGPVKKYQRLFDNRDRPANIYVHASHTPFQMSDWCR-------------- 1143
ALMHDAV+LL GPVKKYQ + D RDRP +I+++A TP +MS+WC+
Sbjct: 1529 ALMHDAVILLFGPVKKYQLIHDERDRPEHIFIYAGRTPQEMSEWCQKFLTPRSASSPVPV 1588
Query: 1142 -----ENLSSC--EHVANDYTAFDQSQHGEAVVLEIKKMRRLSIPEPLIQLHAYLKTNVT 984
++L C VANDYTAFDQSQHGEA VLE KM R++IPE LI LH +KT++T
Sbjct: 1589 MVSGDDSLIGCHPHFVANDYTAFDQSQHGEAAVLERLKMERVNIPEWLIALHIMIKTHIT 1648
Query: 983 TQFGPLTCMRLTGEPGTYDDNTDYNLAVIHSQYLMASIPHMVSGDDSLIDRQPLPNPLWI 804
TQFGPLTCMRLTGEPGTY DN+DYNLAVI +Y M+ + NPLW
Sbjct: 1649 TQFGPLTCMRLTGEPGTYFDNSDYNLAVIFLEYSMSG-------------QWLSENPLWP 1695
Query: 803 TIGPMLHLRFKLEVTRYPLFCGYLVGPSGAVRSPITLFAKSLMALDDGSLDDKLASYLTE 624
I P+L LRFK E TRY FCGY VG +GAVR P LFAK +A++D S+ DK+ASY TE
Sbjct: 1696 AIKPLLALRFKKEKTRYGNFCGYYVGAAGAVRMPRALFAKIFIAVEDASIADKMASYATE 1755
Query: 623 FSVGHSLGQEMWNLIPVEQVHYQAALFDFFCRKASREQKLVLKIGEVPDTIISTILSSAR 444
F++GHSLG +W+L+PVE+V YQ+A+FDF CR A RE KL+ K+G V +++ + A
Sbjct: 1756 FAIGHSLGDALWSLLPVEEVVYQSAVFDFLCRNAPRELKLLFKLGPVERSVVEAVQEFAT 1815
Query: 443 AIARPLYAYLSSSARKLLL-KGSKTYRPFDTEESLQFEGVLQHAVSIATPPPRLTGGSL 270
+ Y +L+S+ RK+LL + + + P D E Q +G L + S+ P LTGG L
Sbjct: 1816 WASYAFYRFLNSAQRKVLLTRSPQLHFPGDAPEVSQLQGELLQSFSMMQPTLPLTGGLL 1874
Score = 403 bits (1035), Expect = e-109
Identities = 230/554 (41%), Positives = 311/554 (56%), Gaps = 2/554 (0%)
Frame = -1
Query: 5954 LFESLSNTIHRDTVTSPLVEAVADPLRDSLEKYPYAVSPSLTSFLSKRGINISGYGAKTH 5775
L E L+ T HRDTV SP++EAVA PLR S+++YPY V L + GI SG+G K H
Sbjct: 84 LVEMLAPTTHRDTVASPILEAVAGPLRTSIQRYPYEVPAHAVPVLQRFGIEASGFGFKAH 143
Query: 5774 PHPAHKNIENYILQDVWPNLIRNQSSVLFMKPSKFRKLEQKDSNFHELINYRLTPQDTTR 5595
PHP HK IE ++L + W NL R+ S+VLFMK SKF KL+ +++NF L NY LT +DTTR
Sbjct: 144 PHPVHKTIEIHLLFEHWLNLCRSPSAVLFMKQSKFEKLQHENANFEALANYNLTARDTTR 203
Query: 5594 YPSSSTTLPAHSTVFMHDALMYYTPGDIADLFLSAPHLTQLYATLVVPPESSFTDTSFFP 5415
Y + P + FMHDAL Y++ +A F PHL +L+A+LVVPPES FT+ S FP
Sbjct: 204 YEQVAVAPPTQAVWFMHDALQYFSLSQVAAFFADCPHLEKLFASLVVPPESDFTNLSLFP 263
Query: 5414 ELYNFHFHDTDLVYELEGNPSHHYIQPKSALDWLRTSTIRCSDLTLSISILESIGPVHHL 5235
E+Y + F + L Y+LEGNP H Y QP+ AL+WL+T+TIRC +L L+++ LES GPVH L
Sbjct: 264 EIYRYSFAGSRLNYQLEGNPGHSYSQPREALEWLKTTTIRCGNLYLTVTKLESWGPVHSL 323
Query: 5234 LIQRGLAPKHRENTTRDFDTPDCFLLPAPTSLSQNVRDRLVPLAAYHSLRAYVMAVRTLR 5055
LIQRG H E+ F PD LP +L Q++R RLVP Y +L YV AVRTLR
Sbjct: 324 LIQRGKPSVHLEHDEVSFVGPDAVALPEAAALRQDLRHRLVPRTVYDALFVYVRAVRTLR 383
Query: 5054 TTDPAGFVRTQSTKPEFAWVTAEAWDSLQNFALLTCNQRPAVSYLTFASSFARIKHWXXX 4875
TTDP GFVRTQS K E++WVT+ AWD+LQ+F T R + F S+FA+ ++W
Sbjct: 384 TTDPVGFVRTQSNKAEYSWVTSAAWDNLQHFVTETAAHRVPNRHFFFNSTFAKCRYWCSQ 443
Query: 4874 XXXXXXXXXXXXXXAVS-FTTVKVAHYCSTRQIDSLILFGKQIVRPSCPLNSPFSLHQYF 4698
++ FT K+A S+R + +L +F +V P +F
Sbjct: 444 HKLGLLTVTTPPACGLTLFTGAKLASAMSSR-LTALAVFHHWVVPPPT---------LFF 493
Query: 4697 SRTAQLPPSLSTQLPRFELVTSPRIITKWSPCLARFLLSTPFFRTLTTQLNFLSKKCFFA 4518
+ A L T+LP+ + P + R L PF R + F
Sbjct: 494 TPKAPLLAIQLTRLPQPLFSSVPFLHKPLGKLSLRLLNRFPFLR-----------RFFPD 542
Query: 4517 KGFPHSRKLXXXXXXXXXILW-AYRRFMGPDAPQAMFDQYNGYFNPKPWKLRIAQGPTKC 4341
P +L +W A R F+GPDAPQA+ D Y +F+P W+L + P
Sbjct: 543 APIPTWARLLTVAIALSPAVWLAIRHFIGPDAPQALNDHYVRFFHPDRWQLTFERQPRFV 602
Query: 4340 SRGQFLPFCPRPHS 4299
+ + P+ P P +
Sbjct: 603 ALDRTFPW-PLPQA 615
>gb|AFV34757.1| polyprotein [Grapevine Syrah virus 1]
Length = 2081
Score = 1051 bits (2717), Expect = 0.0
Identities = 566/1197 (47%), Positives = 737/1197 (61%), Gaps = 26/1197 (2%)
Frame = -1
Query: 3788 PDDTTPERSTLILDPSGFGEVSTFAQLYPDDYVLGCAEFFCRKRHHGVSTAPFPTMPCLL 3609
P PE S L D S GEVS F L+P D++ A F R+R +S A +P M CLL
Sbjct: 741 PGLVEPEHSPLAADSSATGEVSEFFNLHPADWIAPTATFLARRRGETISGAKYPAMDCLL 800
Query: 3608 DAVGSCLGVTPAELWSTLCHHLPDSLLQNPQITSCGLSTDHLTALSHFYQFKAFVTSDQE 3429
AV + + LW T+C + PDS+L+ I GLST H AL+ ++ +A S
Sbjct: 801 AAVSAGANIPKDALWKTICSYFPDSMLREEDIAKHGLSTHHFAALAREHRLQATFHSAGN 860
Query: 3428 PIPHPYGVDSAPTTIRFSHTTGN---PGHFFITSDPGAPPPPKXXXXXXXXXXXXXXLTT 3258
GV+ + HT + PGHF + +D P
Sbjct: 861 QFV--LGVEHPSVSFHIDHTPESATAPGHFSLRADERQHSP---RLLGGRAADLVHAALK 915
Query: 3257 FRLNGELLPFQTVHNYRANVKRAKNLISNMKNGFDGVMATVDPQHPNSAKEKFVTTDGIL 3078
F++ +LPFQ H+Y NV RAKNLISNMKNGFDGV+A +DP H N ++++ ++ DG +
Sbjct: 916 FKVGSAVLPFQQAHDYTTNVARAKNLISNMKNGFDGVLANIDPAHTNESRDRLLSLDGAM 975
Query: 3077 DIAKSRSIKLIHIAGFPGCGKSYPIQRLLLTAPRARNFRISVPTAELRHEWKASMDLEPK 2898
DIA R +KLIHIAGFPGCGKSYPI +LL + ++F+I+VPT ELR+EWK + ++P+
Sbjct: 976 DIAAPRDVKLIHIAGFPGCGKSYPIAQLLKSRA-FKHFKIAVPTVELRNEWKGVLKVKPQ 1034
Query: 2897 NNWRIGTWEXXXXXXXXXLVVDEIYKMPRGYLDLAILMDPHLEMVIVLGDPLQGEYHSTH 2718
+NWRI TWE LV+DEIYKMPRGYLDLAI DP +++VI LGDPLQG YHSTH
Sbjct: 1035 DNWRISTWESSLLKSARILVIDEIYKMPRGYLDLAIHADPTIDLVIALGDPLQGVYHSTH 1094
Query: 2717 PQSSNHKLSSEINHLRPYLDFYCAWTRRCPKLIADFFGVPTTSQEPGFCRPVNHLPMNCP 2538
SSNH+LSSE+ HL+PY+D+YC W+ R P+ I FFG+ +TS PGF ++P N
Sbjct: 1095 SDSSNHRLSSEVKHLQPYMDYYCLWSHRVPQDIGTFFGIKSTSTVPGFKSYQANIPSNLR 1154
Query: 2537 ILTNSHSAALTLTEAHSRACTISASQGSTYSSPVVIHLDRHSSQLSNSMALVALTRSTKG 2358
L NS SAA L + + TI++SQGSTYS+P IHLDRHS LS++ +LVALTRS G
Sbjct: 1155 QLANSQSAAKVLNQCGFSSVTIASSQGSTYSAPACIHLDRHSMSLSHAHSLVALTRSKSG 1214
Query: 2357 VLFSGDQSILQPGPHSAKLFSQLTQFQSSHSPDDRYPIQTHFIEQLRGVTLISTPLKSRK 2178
V+F+GD+ +L+ P LFS S+ + + ++ F + ++ PLK R
Sbjct: 1215 VIFTGDKRVLE-APGGNLLFS-------SYFQEKKVDLRALFPTEFPCCPILLEPLKRRP 1266
Query: 2177 LVGACPSEVKHSSTVRDFTHHAIRGSTVRDPSYQPSLAHVVRHTSPAIYHSELNRLHPDF 1998
D T A P + E +P+
Sbjct: 1267 T---------------DLTGGA-----------------------PFPFRDEARVFNPER 1288
Query: 1997 KGDAVRSAVIVCGDGIDHLPRVSPHFIAETRLPYHSDMPSAMPSQCSLSPPTFSAPVF-E 1821
+ D A +VCGDG + P+VS HF+ ETR P H D+PSA P + P F E
Sbjct: 1289 RDDVFVEAAVVCGDGSSNAPQVSTHFLPETRRPLHFDLPSAKPEFAAHEAPAPLTDTFIE 1348
Query: 1820 PVYPGEDFETLASTFLPAHDPHLREIIFKGERSAQFPYLNQPFDLFLQPQTLIAAQHHGQ 1641
PVYPGE FE +A+ FLPAHDP ++EI+FK +RS QFP+++QPF + QP +L AA HH +
Sbjct: 1349 PVYPGETFENIAAHFLPAHDPEVKEILFKDQRSNQFPFIDQPFHVGAQPASLCAAVHHSK 1408
Query: 1640 KDSTLLPASIPKRLRFRRNSTPYVISPKDQLLGELLFISLCKAYNRHPSSVEPFDEALFA 1461
KD TLL ASI KRLRFR + PY I+ KD++LG +LF + C+A R P+ PFDEALFA
Sbjct: 1409 KDPTLLAASIEKRLRFRASDAPYQITAKDEILGSMLFEAHCRAMRRDPNVRVPFDEALFA 1468
Query: 1460 DCINLNEFAQLSSKTQTTIMANASRSDPDWRWSAVRIFSKSQHKTNEASIFGSWKACQTL 1281
+CI LNEFAQL+SKTQ IMAN RSDPDWR +AVRIF+K+QHK N S+FG WKACQTL
Sbjct: 1469 ECIALNEFAQLTSKTQAVIMANHERSDPDWRHTAVRIFAKNQHKVNSGSLFGPWKACQTL 1528
Query: 1280 ALMHDAVVLLLGPVKKYQRLFDNRDRPANIYVHASHTPFQMSDWCR-------------- 1143
ALMHDAV+LL GPVKKYQ + D RDRP +I+++A TP +MS+WC+
Sbjct: 1529 ALMHDAVILLFGPVKKYQLIHDERDRPEHIFIYAGRTPQEMSEWCQKFLTPRSASSPVPV 1588
Query: 1142 -----ENLSSC--EHVANDYTAFDQSQHGEAVVLEIKKMRRLSIPEPLIQLHAYLKTNVT 984
++L C VANDYTAFDQSQHGEA VLE KM R++IPE LI LH +KT++T
Sbjct: 1589 MVSGDDSLIGCHPHFVANDYTAFDQSQHGEAAVLERLKMERVNIPEWLIALHIMIKTHIT 1648
Query: 983 TQFGPLTCMRLTGEPGTYDDNTDYNLAVIHSQYLMASIPHMVSGDDSLIDRQPLPNPLWI 804
TQFGPLTCMRLTGEPGTY DN+DYNLAVI +Y M+ + NPLW
Sbjct: 1649 TQFGPLTCMRLTGEPGTYFDNSDYNLAVIFLEYSMSG-------------QWLSENPLWP 1695
Query: 803 TIGPMLHLRFKLEVTRYPLFCGYLVGPSGAVRSPITLFAKSLMALDDGSLDDKLASYLTE 624
I P+L LRFK E TRY FCGY VG +GAVR P LFAK +A++D S+ DK+ASY TE
Sbjct: 1696 AIKPLLALRFKKEKTRYGNFCGYYVGAAGAVRMPRALFAKIFIAVEDASIADKMASYATE 1755
Query: 623 FSVGHSLGQEMWNLIPVEQVHYQAALFDFFCRKASREQKLVLKIGEVPDTIISTILSSAR 444
F++GHSLG +W+L+PVE+V YQ+A+FDF CR A RE KL+ K+G V +++ + A
Sbjct: 1756 FAIGHSLGDALWSLLPVEEVVYQSAVFDFLCRNAPRELKLLFKLGPVERSVVEAVQEFAT 1815
Query: 443 AIARPLYAYLSSSARKLLL-KGSKTYRPFDTEESLQFEGVLQHAVSIATPPPRLTGG 276
+ Y +L+S+ RK+LL + + + P D E Q +G L + S+ P LTGG
Sbjct: 1816 WASYAFYRFLNSAQRKVLLTRSPQLHFPGDAPEVSQLQGELLQSFSMMQPTLPLTGG 1872
Score = 403 bits (1035), Expect = e-109
Identities = 230/554 (41%), Positives = 311/554 (56%), Gaps = 2/554 (0%)
Frame = -1
Query: 5954 LFESLSNTIHRDTVTSPLVEAVADPLRDSLEKYPYAVSPSLTSFLSKRGINISGYGAKTH 5775
L E L+ T HRDTV SP++EAVA PLR S+++YPY V L + GI SG+G K H
Sbjct: 84 LVEMLAPTTHRDTVASPILEAVAGPLRTSIQRYPYEVPAHAVPVLQRFGIEASGFGFKAH 143
Query: 5774 PHPAHKNIENYILQDVWPNLIRNQSSVLFMKPSKFRKLEQKDSNFHELINYRLTPQDTTR 5595
PHP HK IE ++L + W NL R+ S+VLFMK SKF KL+ +++NF L NY LT +DTTR
Sbjct: 144 PHPVHKTIEIHLLFEHWLNLCRSPSAVLFMKQSKFEKLQHENANFEALANYNLTARDTTR 203
Query: 5594 YPSSSTTLPAHSTVFMHDALMYYTPGDIADLFLSAPHLTQLYATLVVPPESSFTDTSFFP 5415
Y + P + FMHDAL Y++ +A F PHL +L+A+LVVPPES FT+ S FP
Sbjct: 204 YEQVAVAPPTQAVWFMHDALQYFSLSQVAAFFADCPHLEKLFASLVVPPESDFTNLSLFP 263
Query: 5414 ELYNFHFHDTDLVYELEGNPSHHYIQPKSALDWLRTSTIRCSDLTLSISILESIGPVHHL 5235
E+Y + F + L Y+LEGNP H Y QP+ AL+WL+T+TIRC +L L+++ LES GPVH L
Sbjct: 264 EIYRYSFAGSRLNYQLEGNPGHSYSQPREALEWLKTTTIRCGNLYLTVTKLESWGPVHSL 323
Query: 5234 LIQRGLAPKHRENTTRDFDTPDCFLLPAPTSLSQNVRDRLVPLAAYHSLRAYVMAVRTLR 5055
LIQRG H E+ F PD LP +L Q++R RLVP Y +L YV AVRTLR
Sbjct: 324 LIQRGKPSVHLEHDEVSFVGPDAVALPEAAALRQDLRHRLVPRTVYDALFVYVRAVRTLR 383
Query: 5054 TTDPAGFVRTQSTKPEFAWVTAEAWDSLQNFALLTCNQRPAVSYLTFASSFARIKHWXXX 4875
TTDP GFVRTQS K E++WVT+ AWD+LQ+F T R + F S+FA+ ++W
Sbjct: 384 TTDPVGFVRTQSNKAEYSWVTSAAWDNLQHFVTETAAHRVPNRHFFFNSTFAKCRYWCSQ 443
Query: 4874 XXXXXXXXXXXXXXAVS-FTTVKVAHYCSTRQIDSLILFGKQIVRPSCPLNSPFSLHQYF 4698
++ FT K+A S+R + +L +F +V P +F
Sbjct: 444 HKLGLLTVTTPPACGLTLFTGAKLASAMSSR-LTALAVFHHWVVPPPT---------LFF 493
Query: 4697 SRTAQLPPSLSTQLPRFELVTSPRIITKWSPCLARFLLSTPFFRTLTTQLNFLSKKCFFA 4518
+ A L T+LP+ + P + R L PF R + F
Sbjct: 494 TPKAPLLAIQLTRLPQPLFSSVPFLHKPLGKLSLRLLNRFPFLR-----------RFFPD 542
Query: 4517 KGFPHSRKLXXXXXXXXXILW-AYRRFMGPDAPQAMFDQYNGYFNPKPWKLRIAQGPTKC 4341
P +L +W A R F+GPDAPQA+ D Y +F+P W+L + P
Sbjct: 543 APIPTWARLLTVAIALSPAVWLAIRHFIGPDAPQALNDHYVRFFHPDRWQLTFERQPRFV 602
Query: 4340 SRGQFLPFCPRPHS 4299
+ + P+ P P +
Sbjct: 603 ALDRTFPW-PLPQA 615
>ref|YP_004300278.1| replication-associated polyprotein [Fig fleck-associated virus]
gi|326380895|emb|CAQ86912.3| replication-associated
polyprotein [Fig fleck-associated virus]
Length = 2161
Score = 1012 bits (2616), Expect = 0.0
Identities = 567/1173 (48%), Positives = 727/1173 (61%), Gaps = 27/1173 (2%)
Frame = -1
Query: 3770 ERSTLILDPSGFGEVSTFAQLYPDDYVLGCAEFFCRKRHHGVSTAPFP-----TMP---C 3615
E S LILDP+ G V+TF+ ++ GCA+F R+R+ G P+P + P C
Sbjct: 698 ENSRLILDPTAIGPVTTFSSTLSRSWLPGCADFPFRRRNPGSPHLPYPPPLASSSPHPCC 757
Query: 3614 LLDAVGSCLGVTPAELWSTLCHHLPDSLLQNPQITSCGLSTDHLTALSHFYQFKAFVTSD 3435
LL A + GV LW+ LC PDSLL T+ GLST+HLTAL +Y A V S+
Sbjct: 758 LLVAFSNATGVFKETLWTLLCETFPDSLLD----TTLGLSTEHLTALCGYYFAAATVHSE 813
Query: 3434 QEPIPHPYGVDSAPTTIRFSHTTGNPGHFFITSDPGAPPPPKXXXXXXXXXXXXXXLTTF 3255
YGV + HTTG PGHF + G P + F
Sbjct: 814 HASCV--YGVTDPVIKLTIRHTTGFPGHFELILLGGTP------NAFSMVSPLSQSILNF 865
Query: 3254 RLNGELLPFQTVHNYRANVKRAKNLISNMKNGFDGVMATVDPQHPNSAKEKFVTTDGILD 3075
+ + LP + VHNY A RAKNL SN+KN FDG+MA+ +P P++A FV+ D LD
Sbjct: 866 TYSKKPLPIKQVHNYVALPHRAKNLSSNLKNSFDGIMASANPLSPSTAAAAFVSLDNRLD 925
Query: 3074 IAKSRSIKLIHIAGFPGCGKSYPIQRLLLTAPRARNFRISVPTAELRHEWKASMDLEPKN 2895
R ++L+H+AGF GCGKS PIQ LL RNFR+SVPT ELR+EWK + L+
Sbjct: 926 FQPPRCVQLVHLAGFAGCGKSLPIQNLLRHNQDFRNFRVSVPTTELRNEWKKDLQLKSTE 985
Query: 2894 NWRIGTWEXXXXXXXXXLVVDEIYKMPRGYLDLAILMDPHLEMVIVLGDPLQGEYHSTHP 2715
+WRI TWE LV+DEIYKMPRGYLDL IL DP ++ VI+LGDPLQGEYHS +P
Sbjct: 986 SWRINTWESSLLKTSPILVIDEIYKMPRGYLDLTILADPTIQFVIILGDPLQGEYHSLNP 1045
Query: 2714 QSSNHKLSSEINHLRPYLDFYCAWTRRCPKLIADFFGVPTTSQEPGFCRPVNHLPMN--C 2541
SSNH LSSEI HL PY+D+YC W+ R P+ +A+FF + ++++ PGFC HLP +
Sbjct: 1046 SSSNHHLSSEITHLLPYIDYYCMWSYRVPRKLANFFNISSSNKNPGFCSFSLHLPTDPSS 1105
Query: 2540 PILTNSHSAALTLTEAHSRACTISASQGSTYSSPVVIHLDRHSSQLSNSMALVALTRSTK 2361
PILT S S A L + RA TIS+SQG T P I+LDR+ LS S +VALTRS
Sbjct: 1106 PILTCSQSQAKILNDTGHRALTISSSQGLTLDKPAHIYLDRNIPLLSPSNVIVALTRSRV 1165
Query: 2360 GVLFSGDQSILQPGPHSAKLFSQLTQFQSSHSPDDRYPIQTHFIEQLRGVTLISTPLKSR 2181
G+ F+GD + S + L + + + HF L V +I++PL +R
Sbjct: 1166 GLCFTGDSDMFNCIRRSTPILEALFSGR-------QIDLAHHFPSILSRVNIITSPLPAR 1218
Query: 2180 K-LVGACPSEVKHSSTVRDFTHHAIRGSTVR------DPSYQPSLAHVVRHTSPAIYHSE 2022
+ L G PS SS R A+ R P P++A+ P++ S+
Sbjct: 1219 RTLFGGAPSHSSLSSGPRPRLVPALVPGLNRFTSLPSAPRPGPAVAN-----PPSLPLSQ 1273
Query: 2021 LNRLHPDFKGDAVRSAVIVCGDGIDHLPR--VSPHFIAETRLPYHSDMPSAMPSQCSLSP 1848
+ + PD + D V +V I+ P+ + ETR P H ++P S + SP
Sbjct: 1274 MQSVDPDSQHDVV----LVYPQPIECEPQRAADATILPETRRPLHHELPFVELSSPNPSP 1329
Query: 1847 PTFSAPVFEPVYPGEDFETLASTFLPAHDPHLREIIFKGERSAQFPYLNQPFDLFLQPQT 1668
FS F YPG D++ +A FL P +EI+++G S+QFP+LN L QP T
Sbjct: 1330 ALFSETAFSHSYPGVDWQLIAGHFLSPFTPEEKEIMYRGTLSSQFPHLNIESRLGPQPLT 1389
Query: 1667 LIAAQHHGQKDSTLLPASIPKRLRFRRNSTPYVISPKDQLLGELLFISLCKAYNRHPSSV 1488
L AA H+ ++DSTLLPASI KRLRFR ++ PY ISP DQLLG LLF+SLCKAY+R P +
Sbjct: 1390 LSAANHNSKRDSTLLPASIKKRLRFRPSARPYSISPSDQLLGHLLFLSLCKAYHRSPDPI 1449
Query: 1487 EPFDEALFADCINLNEFAQLSSKTQTTIMANASRSDPDWRWSAVRIFSKSQHKTNEASIF 1308
E F+ LF DCI LN+++QL+SKTQ TI ANA RSDPDWRWSA RIF+K+QHK NE SIF
Sbjct: 1450 E-FNFPLFVDCIELNDYSQLTSKTQKTIQANAYRSDPDWRWSAARIFAKTQHKVNEGSIF 1508
Query: 1307 GSWKACQTLALMHDAVVLLLGPVKKYQRLFDNRDRPANIYVHASHTPFQMSDWCRENLSS 1128
G WKACQTLAL+HDAV+L+ GP+KKYQR FD++DRP ++YVHA TP Q+S WC++ L+
Sbjct: 1509 GPWKACQTLALLHDAVILIFGPIKKYQRHFDDKDRPPHLYVHAGKTPHQLSSWCQQFLTP 1568
Query: 1127 CEHVANDYTAFDQSQHGEAVVLEIKKMRRLSIPEPLIQLHAYLKTNVTTQFGPLTCMRLT 948
+ANDYTAFDQSQ GEA VLE+ KMRR+SIPE LIQLH +KT++TTQFGPLTCMRLT
Sbjct: 1569 GPRLANDYTAFDQSQGGEAAVLEVLKMRRVSIPEHLIQLHKTIKTSITTQFGPLTCMRLT 1628
Query: 947 GEPGTYDDNTDYNLAVIHSQYLMASIPHMVSGDDSLIDRQPLPNPLWITIGPMLHLRFKL 768
GEPGTYDDNTDYN A+++SQ+ + P +VSGDDSLIDR PLP+P W TI +L LR K
Sbjct: 1629 GEPGTYDDNTDYNTAILYSQFQLGDTPVLVSGDDSLIDRVPLPHPHWPTISNLLLLRPKP 1688
Query: 767 EVTRYPLFCGYLVGPSGAVRSPITLFAKSLMALDDGSLDDKLASYLTEFSVGHSLGQEMW 588
E++ + LFCGY VGP GAVR+P LFAK +A D G LD LAS+L EF+VGHSLG +W
Sbjct: 1689 EISNFSLFCGYFVGPEGAVRAPRALFAKLAIAFDLGELDKCLASFLAEFTVGHSLGDLVW 1748
Query: 587 NLIPVEQVHYQAALFDFFCRKASREQKLVLKIGEVPDTIISTILSSARAIARPLYAYLSS 408
NLIP + + YQ ALFD FCR+ SREQKL L++GE+PD ++ L S
Sbjct: 1749 NLIPPDLLIYQFALFDAFCRECSREQKLALRLGEIPDYSRLLRFDQFHQFTFASFSLLKS 1808
Query: 407 SARKL---LLKGSK-----TYRPFDTEESLQFE 333
SAR+L L +G K T+ F E + F+
Sbjct: 1809 SARRLYLRLFRGKKLRNVNTFPAFHPEGAASFD 1841
Score = 362 bits (930), Expect = 9e-97
Identities = 219/568 (38%), Positives = 301/568 (52%), Gaps = 23/568 (4%)
Frame = -1
Query: 5954 LFESLSNTIHRDTVTSPLVEAVADPLRDSLEKYPYAVSPSLTSFLSKRGINISGYGAKTH 5775
+ E LS T H+D TSPL+E+++ PLR SL+ Y +A+S TS L GIN+SG G+ H
Sbjct: 6 ILEQLSFTSHKDASTSPLMESISLPLRKSLDLYKFALSKEHTSMLQAYGINVSGLGSTPH 65
Query: 5774 PHPAHKNIENYILQDVWPNLIRNQSSVLFMKPSKFRKLEQKDSNFHELINYRLTPQDTTR 5595
PHPAHK IE ++L D W L + S+V+FMK SKF KL + NF L+N+ L P+D R
Sbjct: 66 PHPAHKTIETHLLFDHWSFLATSPSTVMFMKESKFNKLSKLQPNFQTLLNFHLHPKDFAR 125
Query: 5594 YPSSSTTL--PAHSTVFMHDALMYYTPGDIADLFLSAPHLTQLYATLVVPPESSFTDTSF 5421
Y L P VFMHDALMYY+ I DLF +P ++ LYA+L++PPE+ FTD S
Sbjct: 126 YGPDPLPLAFPETPLVFMHDALMYYSRAQILDLFFRSPKVSHLYASLIIPPEADFTDLSL 185
Query: 5420 FPELYNFHFHDTDLVYELEGNPSHHYIQPKSALDWLRTSTIRCS---DLTLSISILESIG 5250
P LY F F DL+Y LE NPS Y QP+S+L+WL+T+ I S L+LS+++LES G
Sbjct: 186 NPSLYQFQFLGQDLLYSLESNPSAQYTQPQSSLEWLKTTVIHSSTHPGLSLSVTVLESWG 245
Query: 5249 PVHHLLIQRGLAPKHRENTTRD---FDTPDCFLLPAPTSLSQNVRDRLVPLAAYHSLRAY 5079
P+H LLI R L + + D F TPDC LLP P SL+ RD LVP YH+L Y
Sbjct: 246 PIHSLLISR-LTKESPIPASEDRLLFKTPDCVLLPPPLSLNVPSRDLLVPAQVYHNLFLY 304
Query: 5078 VMAVRTLRTTDPAGFVRTQSTKPEFAWVTAEAWDSLQNFALLTCNQRPAVSYLTFASSFA 4899
V AVRTLR TDP+GF+RTQ++KPE+AWVT+ AWD L F LLTC RP + +
Sbjct: 305 VRAVRTLRVTDPSGFIRTQNSKPEYAWVTSNAWDHLAQFMLLTCPIRPNSHFAYLVTPLL 364
Query: 4898 RIKHWXXXXXXXXXXXXXXXXXAVSFTTVKVAHYCSTRQIDSLILFGKQIVRPSC-PLN- 4725
R++H + +A + I + LF ++ + PLN
Sbjct: 365 RLRHQLKTLSRSSLNSLILAVPSSFLCLGLLARRLFSSTITQIFLFRNPLLASTTPPLNN 424
Query: 4724 ---------SPFSLHQYFSRTAQLPPSLSTQLPRFELVTSPRIITKWSP--CLARFLLST 4578
+ + L+Q S + S +LP F++V +P+ + P FL
Sbjct: 425 ARQPVLTRLADWFLNQLPSFVQRKLSPPSPRLPIFKVVLTPKPVQYTYPPDVPPLFLKFA 484
Query: 4577 P--FFRTLTTQLNFLSKKCFFAKGFPHSRKLXXXXXXXXXILWAYRRFMGPDAPQAMFDQ 4404
P ++N + + F + + + R P +PQ + D
Sbjct: 485 PPRILHLFRQEVNHVPRWLF---------PITLSASALSALYLLFVRLSSPSSPQELSDS 535
Query: 4403 YNGYFNPKPWKLRIAQGPTKCSRGQFLP 4320
Y YF+PKPWKL + + F P
Sbjct: 536 YRRYFHPKPWKLFLERKEHFTPEAPFFP 563
>ref|NP_044328.1| replicase [Kennedya yellow mosaic virus]
gi|548564|sp|P36304.1|POLR_KYMVJ RecName: Full=RNA
replicase polyprotein gi|221971|dbj|BAA00532.1| unnamed
protein product [Kennedya yellow mosaic virus]
Length = 1874
Score = 997 bits (2578), Expect = 0.0
Identities = 551/1169 (47%), Positives = 725/1169 (62%), Gaps = 17/1169 (1%)
Frame = -1
Query: 3788 PDDTTPERSTLILDPSGFGEVSTFAQLYPDDYVLGCAEFFCRKRHHGVSTAPFPTMPCLL 3609
P T +S L+ DP+ G +F+ LYP D+ A F R R + P P CLL
Sbjct: 753 PKPPTEVQSPLMADPTCVGPAVSFSSLYPRDFFPNTASFLTRLRLSPPTPLPMPKNNCLL 812
Query: 3608 DAVGSCLGVTPAELWSTLCHHLPDSLLQNPQITSCGLSTDHLTALSHFYQFKAFVTSDQE 3429
AV L + P LW++L LPDSLL N +I S G+STD LTALSH + F+A V S++
Sbjct: 813 TAVAPSLHINPHRLWTSLQEVLPDSLLSNSEIDSVGMSTDLLTALSHLFNFQAVVHSERG 872
Query: 3428 PIPHPYGVDSAPTTIRFSHTTGNPGHFFITSDPGAPPPPKXXXXXXXXXXXXXXLTT--- 3258
I +G+ SA T I HT G P H+ PPPK L
Sbjct: 873 DIL--FGLQSAKTVIHIYHTNGPPAHY--------SPPPKIIGSNSPPSSQQHPLEQAAL 922
Query: 3257 -FRLNGELLPFQTVHNYRANVKRAKNLISNMKNGFDGVMATVDP----QHPNSAKEKFVT 3093
F+ G LPF + H++ +V+ AKNLISNMKNGFDGVM+T++P Q +S +EKF+
Sbjct: 923 RFKYQGSHLPFSSFHSFTTSVQHAKNLISNMKNGFDGVMSTIEPSIRHQPGHSPREKFIA 982
Query: 3092 TDGILDIAKSRSIKLIHIAGFPGCGKSYPIQRLLLTAPRARNFRISVPTAELRHEWKASM 2913
D ++D+A+ +++ + H+AGF GCGK+ P+Q LL T P +FR+S PT ELR+EWK M
Sbjct: 983 LDAMIDLARPKTVSMFHLAGFAGCGKTKPLQSLLSTRP-FHSFRVSTPTTELRNEWKKDM 1041
Query: 2912 DLEPKNNWRIGTWEXXXXXXXXXLVVDEIYKMPRGYLDLAILMDPHLEMVIVLGDPLQGE 2733
+L +R TWE LV+DEIYK+PRGYLDL IL DP LE+VI+LGDPLQGE
Sbjct: 1042 NLPASQAFRFCTWESSLLKQTKILVIDEIYKLPRGYLDLCILADPCLELVIILGDPLQGE 1101
Query: 2732 YHSTHPQSSNHKLSSEINHLRPYLDFYCAWTRRCPKLIADFFGVPTTSQEPGF----CRP 2565
YHST P SSNH+L SE L P++D YC WT R P IAD F VP+ ++ G R
Sbjct: 1102 YHSTSPHSSNHQLQSETTRLLPFIDHYCWWTYRVPSHIADLFSVPSFNRSEGHYQMAVRT 1161
Query: 2564 VNHLPMNCPILTNSHSAALTLTEAHSRACTISASQGSTYSSPVVIHLDRHSSQLSNSMAL 2385
+ L NS + A + + A TISASQG T+ + V I LD+HS LS S L
Sbjct: 1162 ADSYTPGHFNLVNSVATANAVIQLGFPATTISASQGVTHHNRVTILLDKHSRLLSPSNTL 1221
Query: 2384 VALTRSTKGVLFSGDQSILQPGPHSAKLFSQLTQFQSSHSPDDRYPIQTHFIEQLRGVTL 2205
VALTRST GV F GD L +S+ +FS+ Q + + + F + L
Sbjct: 1222 VALTRSTVGVEFLGDIGSLSGTNNSSDMFSRAIYRQPIN-------LSSSFPRIFHLLPL 1274
Query: 2204 ISTPL--KSRKLVGACPSEVKHSSTVRDFTHHAIRGSTVRDPSYQPSLAHVVRHTSPAIY 2031
++ P+ +S +L+G+ S + H+ + + H+ H P Y
Sbjct: 1275 LNKPISRRSTRLIGS-HSPIFHNPRLTNI--------------------HLPPHI-PTSY 1312
Query: 2030 HSELNRLHPDFKGDAVRSAVIVCGDGIDHLPRVSPHFIAETRLPYHSDMPSAMPSQCSLS 1851
+ +P F+G A PR+ HF+ TRLP S++ A SQ +
Sbjct: 1313 SQDFVVSNPIFQGQAD--------------PRLDTHFLPPTRLPLQSELLPAQLSQTTKP 1358
Query: 1850 PPTFSAPV-FEPVYPGEDFETLASTFLPAHDPHLREIIFKGERSAQFPYLNQPFDLFLQP 1674
+F+ F PVYPGE+FE LA+ FLPAHDP L+E+ + + SAQFP+ ++PF L QP
Sbjct: 1359 TDSFTNNTPFTPVYPGENFENLAAFFLPAHDPELKEVTRRDQTSAQFPWFDRPFSLSCQP 1418
Query: 1673 QTLIAAQHHGQKDSTLLPASIPKRLRFRRNSTPYVISPKDQLLGELLFISLCKAYNRHPS 1494
+LIAA+H +D TLLP SIPKRLRFR++ P+V+S D LLG LF +LCKAY R+P+
Sbjct: 1419 SSLIAAKHSPSQDPTLLPFSIPKRLRFRKSDNPHVLSAIDVLLGNQLFFNLCKAYRRNPT 1478
Query: 1493 SVEPFDEALFADCINLNEFAQLSSKTQTTIMANASRSDPDWRWSAVRIFSKSQHKTNEAS 1314
V PF+ ALFA+CI LN++AQLSSKTQ T++AN SRSDPDWR +AV+IF+KSQHK N+AS
Sbjct: 1479 HVGPFNPALFAECIALNDYAQLSSKTQATLVANHSRSDPDWRHTAVKIFAKSQHKVNDAS 1538
Query: 1313 IFGSWKACQTLALMHDAVVLLLGPVKKYQRLFDNRDRPANIYVHASHTPFQMSDWCRENL 1134
IFG+WKACQTLALMHD V+L LGPVKKYQR+FD DRP ++Y H +P +S WC+ +L
Sbjct: 1539 IFGNWKACQTLALMHDFVILSLGPVKKYQRIFDALDRPPHLYTHCGKSPADLSAWCQTHL 1598
Query: 1133 SSCEHVANDYTAFDQSQHGEAVVLEIKKMRRLSIPEPLIQLHAYLKTNVTTQFGPLTCMR 954
+ + NDYTAFDQSQHGE+V+LE KM+RLSIP LIQLH +LKTNV TQFGPLTCMR
Sbjct: 1599 TGQIKLTNDYTAFDQSQHGESVILEALKMKRLSIPSHLIQLHVHLKTNVATQFGPLTCMR 1658
Query: 953 LTGEPGTYDDNTDYNLAVIHSQYLMASIPHMVSGDDSLIDRQPLPNPLWITIGPMLHLRF 774
LTGEPGTYDDN+DYNLAVIHSQ+ M IP MVSGDDSLIDRQP W +LHLRF
Sbjct: 1659 LTGEPGTYDDNSDYNLAVIHSQFDMKDIPVMVSGDDSLIDRQPPLAQSWEATKRLLHLRF 1718
Query: 773 KLEVTRYPLFCGYLVGPSGAVRSPITLFAKSLMALDDGSLDDKLASYLTEFSVGHSLGQE 594
K E T +PLFCGY G +GA+R+P+ LF+K ++A+DD ++ D+ SYLTEFS GH LG
Sbjct: 1719 KTEKTTHPLFCGYYTGSAGAIRNPLALFSKLMIAIDDEAIHDRRLSYLTEFSTGHQLGDA 1778
Query: 593 MWNLIPVEQVHYQAALFDFFCRKASREQKLVLKIGEVPDTIISTILSSARAIARPLYAYL 414
+W L+P YQ+A FD+FCR + +K +L E+PD++IS I SS + +++ + L
Sbjct: 1779 LWTLLPESTQIYQSACFDYFCRHSPPHEKALLSSFELPDSVISKISSSTKWLSKNAFYAL 1838
Query: 413 SSSARKLLL--KGSKTYRPFDTEESLQFE 333
S RK ++ + S ++ L+FE
Sbjct: 1839 PSKIRKAVIASRHSSSFPENPDVSQLEFE 1867
Score = 328 bits (842), Expect = 1e-86
Identities = 180/376 (47%), Positives = 225/376 (59%), Gaps = 21/376 (5%)
Frame = -1
Query: 5948 ESLSNTIHRDTVTSPLVEAVADPLRDSLEKYPYAVSPSLTSFLSKRGINISGYGAKTHPH 5769
++L++T H+D P++E+V D L DSL+ YP+ V L FL K GI I+ +G+ HPH
Sbjct: 8 DALASTSHKDPSLHPVLESVHDSLTDSLQTYPWMVPQDLQPFLLKSGIPINSFGSSPHPH 67
Query: 5768 PAHKNIENYILQDVWPNLIRNQSSVLFMKPSKFRKLEQKDSNFHELINYRLTPQDTTRYP 5589
PAHK +E ++L W +L SSVLFMKP KF KL++K+ F L NYRLTP D+ R+P
Sbjct: 68 PAHKTLETHLLFTHWMHLCTQPSSVLFMKPQKFMKLQRKNKFFQHLHNYRLTPTDSVRFP 127
Query: 5588 SSSTTLPAHSTVFMHDALMYYTPGDIADLFLSAPHLTQLYATLVVPPESSFTDTSFFPEL 5409
S+S LP VFMHDALMYY P I LF P LT L+ +LV PPES FT S P+L
Sbjct: 128 STSPHLPNTPFVFMHDALMYYQPEQILHLFHQVPQLTNLFCSLVTPPESHFTHLSLMPDL 187
Query: 5408 YNFHFHDTDLVYELEGNPSHHYIQPKSALDWLRTSTIRCSDLTLSISILESIGPVHHLLI 5229
Y F L Y EG+ + Y QP +AL WL+ ++I +L LSI+ILES GP+H +LI
Sbjct: 188 YTFTLKGQTLHYTPEGHSAGSYNQPITALSWLKINSILSPNLNLSITILESWGPLHSILI 247
Query: 5228 QRGLA---PK-------------HRENTTRDFDTPDCFLLPAPTSLSQNVRDRLVPLAAY 5097
QRGL PK E F P LP T LSQ +R RLVP + Y
Sbjct: 248 QRGLPLPDPKLLVRSLPPFSRSPDPETDLVSFQVPKSVELPQATFLSQPLRHRLVPESVY 307
Query: 5096 HSLRAYVMAVRTLRTTDPAGFVRTQSTKPEFAWVTAEAWDSLQNFALLTCNQRPAVSYLT 4917
++L Y AVRTLR +DPAGFVRTQS KPE WVT AWD+LQ FALL C RP V Y
Sbjct: 308 NALFTYTRAVRTLRVSDPAGFVRTQSNKPEHKWVTPSAWDNLQTFALLNCPLRPNVVYHV 367
Query: 4916 FASSFARIK-----HW 4884
+ ++K HW
Sbjct: 368 LLNPLQKMKLYFSQHW 383
>sp|P10358.2|POLR_TYMV RecName: Full=RNA replicase polyprotein; AltName: Full=206 kDa
polyprotein; Contains: RecName:
Full=Methyltransferase/Protease; AltName: Full=98 kDa
protein; AltName: Full=MET/PRO; Contains: RecName:
Full=Putative helicase; AltName: Full=42 kDa protein;
AltName: Full=HEL; Contains: RecName: Full=RNA-directed
RNA polymerase; AltName: Full=66 kDa protein; AltName:
Full=POL
Length = 1844
Score = 991 bits (2563), Expect = 0.0
Identities = 554/1162 (47%), Positives = 718/1162 (61%), Gaps = 16/1162 (1%)
Frame = -1
Query: 3749 DPSGFGEVSTFAQLYPDDYVLGCAEFFCRKRHHGVSTAPFPTMPCLLDAVGSCLGVTPAE 3570
DP+ G V F +L+P Y A F R R + P PT+ CLL AV V+
Sbjct: 739 DPTAIGPVLPFEELHPRRYPENTATFLTRLRSLPSNHLPQPTLNCLLSAVSDQTKVSEEH 798
Query: 3569 LWSTLCHHLPDSLLQNPQITSCGLSTDHLTALSHFYQFKAFVTSDQEPIPHPYGVDSAPT 3390
LW +L LPDS L N + + GLST+HLTAL+H Y F+A V SD+ PI +G
Sbjct: 799 LWESLQTILPDSQLSNEETNTLGLSTEHLTALAHLYNFQATVYSDRGPIL--FGPSDTIK 856
Query: 3389 TIRFSHTTGNPGHF-----FITSDPGAPPPPKXXXXXXXXXXXXXXLTTFRLNGELLPFQ 3225
I +HTTG P HF + S P A P +F+++G LPF
Sbjct: 857 RIDITHTTGPPSHFSPGKRLLGSQPSAKGHPSDPLIRAMK--------SFKVSGNYLPFS 908
Query: 3224 TVHNYRANVKRAKNLISNMKNGFDGVMATVDPQHPN----SAKEKFVTTDGILDIAKSRS 3057
HN+ ++ AKNLISNMKNGFDGV++ +D + KE+ + D LD ++
Sbjct: 909 EAHNHPTSISHAKNLISNMKNGFDGVLSLLDVSTGQRTGPTPKERIIQIDHYLDTNPGKT 968
Query: 3056 IKLIHIAGFPGCGKSYPIQRLLLTAPRARNFRISVPTAELRHEWKASMDLEPKNNWRIGT 2877
++H AGF GCGK+YPIQ+LL T ++FR+S PT ELR EWK +M+L +WR T
Sbjct: 969 TPVVHFAGFAGCGKTYPIQQLLKTK-LFKDFRVSCPTTELRTEWKTAMELHGSQSWRFNT 1027
Query: 2876 WEXXXXXXXXXLVVDEIYKMPRGYLDLAILMDPHLEMVIVLGDPLQGEYHSTHPQSSNHK 2697
WE LV+DEIYKMPRGYLDL+IL DP LE+VI+LGDPLQGEYHS SSNH+
Sbjct: 1028 WESSILKSSRILVIDEIYKMPRGYLDLSILADPALELVIILGDPLQGEYHSQSKDSSNHR 1087
Query: 2696 LSSEINHLRPYLDFYCAWTRRCPKLIADFFGVPTTSQEPGFCRPVNHLPMNCPILTNSHS 2517
L SE L PY+D YC W+ R P+ IA F + + + G V+ P+LTNSH+
Sbjct: 1088 LPSETLRLLPYIDMYCWWSYRIPQCIARLFQIHSFNAWQGVIGSVSTPHDQSPVLTNSHA 1147
Query: 2516 AALTLTEAHSRACTISASQGSTYSSPVVIHLDRHSSQLSNSMALVALTRSTKGVLFSGDQ 2337
++LT R+CTIS+SQG T+ P +I LD ++ LS++ LVALTRS GV F G
Sbjct: 1148 SSLTFNSLGYRSCTISSSQGLTFCDPAIIVLDNYTKWLSSANGLVALTRSRSGVQFMGPS 1207
Query: 2336 SILQPGPHSAKLFSQLTQFQSSHSPDDRYPIQTHFIEQLRGVTLISTPLKSR--KLVGAC 2163
S + S+ +FS F +S DRY F + LI++PL +R KL GA
Sbjct: 1208 SYVGGTNGSSAMFSD--AFNNSLIIMDRY-----FPSLFPQLKLITSPLTTRGPKLNGAT 1260
Query: 2162 PSEVKHSSTVRDFTHHAIRGSTVRDPSYQPSLAHVVRHTSPAIYHSELNRLHPDFKGDAV 1983
PS T R P++ H+ H P Y + ++P
Sbjct: 1261 PS----------------ASPTHRSPNF-----HLPPHI-PLSYDRDFVTVNPTLPDQGP 1298
Query: 1982 RSAVIVCGDGIDHLPRVSPHFIAETRLPYHSDMPSAM---PSQCSLSPPTFSAPVFEPVY 1812
+ R+ HF+ +RLP H D+P A+ P S+ PP A PVY
Sbjct: 1299 ET-------------RLDTHFLPPSRLPLHFDLPPAITPPPVSTSVDPPQAKA---SPVY 1342
Query: 1811 PGEDFETLASTFLPAHDPHLREIIFKGERSAQFPYLNQPFDLFLQPQTLIAAQHHGQKDS 1632
PGE F++LA+ FLPAHDP REI+ K + S QFP+ ++PF L QP +LI+A+H D
Sbjct: 1343 PGEFFDSLAAFFLPAHDPSTREILHKDQSSNQFPWFDRPFSLSCQPSSLISAKHAPNHDP 1402
Query: 1631 TLLPASIPKRLRFRRNSTPYVISPKDQLLGELLFISLCKAYNRHPSSVEPFDEALFADCI 1452
TLLPASI KRLRFR + +P+ I+ D +LG LF SLC+AY+R P+S PF+ LFA+CI
Sbjct: 1403 TLLPASINKRLRFRPSDSPHQITADDVVLGLQLFHSLCRAYSRQPNSTVPFNPELFAECI 1462
Query: 1451 NLNEFAQLSSKTQTTIMANASRSDPDWRWSAVRIFSKSQHKTNEASIFGSWKACQTLALM 1272
+LNE+AQLSSKTQ+TI+ANASRSDPDWR + V+IF+K+QHK N+ SIFGSWKACQTLALM
Sbjct: 1463 SLNEYAQLSSKTQSTIVANASRSDPDWRHTTVKIFAKAQHKVNDGSIFGSWKACQTLALM 1522
Query: 1271 HDAVVLLLGPVKKYQRLFDNRDRPANIYVHASHTPFQMSDWCRENLS-SCEHVANDYTAF 1095
HD V+L+LGPVKKYQR+FDN DRP NIY H TP Q+ DWC+E+L+ S +ANDYTAF
Sbjct: 1523 HDYVILVLGPVKKYQRIFDNADRPPNIYSHCGKTPNQLRDWCQEHLTHSTPKIANDYTAF 1582
Query: 1094 DQSQHGEAVVLEIKKMRRLSIPEPLIQLHAYLKTNVTTQFGPLTCMRLTGEPGTYDDNTD 915
DQSQHGE+VVLE KM+RL+IP LIQLH +LKTNV+TQFGPLTCMRLTGEPGTYDDNTD
Sbjct: 1583 DQSQHGESVVLEALKMKRLNIPSHLIQLHVHLKTNVSTQFGPLTCMRLTGEPGTYDDNTD 1642
Query: 914 YNLAVIHSQYLMASIPHMVSGDDSLIDRQPLPNPL-WITIGPMLHLRFKLEVTRYPLFCG 738
YNLAVI+SQY + S P MVSGDDSLID PLP W ++ LHLRFKLE+T +PLFCG
Sbjct: 1643 YNLAVIYSQYDVGSCPIMVSGDDSLID-HPLPTRHDWPSVLKRLHLRFKLELTSHPLFCG 1701
Query: 737 YLVGPSGAVRSPITLFAKSLMALDDGSLDDKLASYLTEFSVGHSLGQEMWNLIPVEQVHY 558
Y VGP+G +R+P+ LF K ++A+DD +LDD+ SYLTEF+ GH LG+ +W+L+P V Y
Sbjct: 1702 YYVGPAGCIRNPLALFCKLMIAVDDDALDDRRLSYLTEFTTGHLLGESLWHLLPETHVQY 1761
Query: 557 QAALFDFFCRKASREQKLVLKIGEVPDTIISTILSSARAIARPLYAYLSSSARKLLLKGS 378
Q+A FDFFCR+ R +K++L +++ I SS R + + L + R + S
Sbjct: 1762 QSACFDFFCRRCPRHEKMLLDDSTPALSLLERITSSPRWLTKNAMYLLPAKLRLAITSLS 1821
Query: 377 KTYRPFDTEESLQFEGVLQHAV 312
+T ++ E E L H V
Sbjct: 1822 QTQSFPESIEVSHAESELLHYV 1843
Score = 333 bits (855), Expect = 5e-88
Identities = 215/582 (36%), Positives = 291/582 (50%), Gaps = 36/582 (6%)
Frame = -1
Query: 5948 ESLSNTIHRDTVTSPLVEAVADPLRDSLEKYPYAVSPSLTSFLSKRGINISGYGAKTHPH 5769
++L+ T HRD P++E+ D +R S++ YP+++ L L+ GI SG G HPH
Sbjct: 8 DALAPTTHRDPSLHPILESTVDSIRSSIQTYPWSIPKELLPLLNSYGIPTSGLGTSHHPH 67
Query: 5768 PAHKNIENYILQDVWPNLIRNQSSVLFMKPSKFRKLEQKDSNFHELINYRLTPQDTTRYP 5589
AHK IE ++L W SSV+FMKPSKF KL Q +SNF EL NYRL P D+TRYP
Sbjct: 68 AAHKTIETFLLCTHWSFQATTPSSVMFMKPSKFNKLAQVNSNFRELKNYRLHPNDSTRYP 127
Query: 5588 SSSTTLPAHSTVFMHDALMYYTPGDIADLFLSAPHLTQLYATLVVPPESSFTDTSFFPEL 5409
+S LP T+FMHDALMYY P I DLFL P+L +LYA+LVVPPE+ +D SF+P+L
Sbjct: 128 FTSPDLPVFPTIFMHDALMYYHPSQIMDLFLRKPNLERLYASLVVPPEAHLSDQSFYPKL 187
Query: 5408 YNFHFHDTDLVYELEGNPSHHYIQPKSALDWLRTSTIRCSDLTLSISILESIGPVHHLLI 5229
Y + L Y EG+ + Y QP A WLR ++IR + LS++ILES GPVH LLI
Sbjct: 188 YTYTTTRHTLHYVPEGHEAGSYNQPSDAHSWLRINSIRLGNHHLSVTILESWGPVHSLLI 247
Query: 5228 QRGLAP--------------------KHRENTTRDFDTPDCFLLPAPTSLSQNVRDRLVP 5109
QRG P + F PD LP T L Q +RDRLVP
Sbjct: 248 QRGTPPPDPSLQAPPTLMTSDLFRSYQEPRLDVVSFRIPDAIELPQATFLQQPLRDRLVP 307
Query: 5108 LAAYHSLRAYVMAVRTLRTTDPAGFVRTQSTKPEFAWVTAEAWDSLQNFALLTCNQRPAV 4929
A Y++L Y AVRTLRT+DPA FVR S+KP+ WVT+ AWD+LQ FALL RP V
Sbjct: 308 RAVYNALFTYTRAVRTLRTSDPAAFVRMHSSKPDHDWVTSNAWDNLQTFALLNVPLRPNV 367
Query: 4928 SYLTFASSFARI-----KHWXXXXXXXXXXXXXXXXXAVSFTTVKVAHY---CSTRQIDS 4773
Y S A + +HW +SF T+ ++ S
Sbjct: 368 VYHVLQSPIASLSLYLRQHW--------RRLTATAVPILSFLTLLQRFLPLPIPLAEVKS 419
Query: 4772 LILFGKQIVR---PSCPLNSPFSLHQYFSRTAQLPPSLSTQLPRFELVTSPRIITKWSPC 4602
+ F +++ R P PL+ H+ + + + P +L P + K +
Sbjct: 420 ITAFRRELYRKKEPHHPLDVFHLQHRVRNYHSAISAVRPASPPHQKL---PHALQKAALL 476
Query: 4601 LAR----FLLSTPFFRTLTTQLNFLSKKCFFAKGFPHSRKLXXXXXXXXXILWAYRRFMG 4434
L R L +TPFFR+ + ++ + K F + +
Sbjct: 477 LLRPISPLLTATPFFRSEQKSMLPNAELSWTLKRFALPWQASLVLLALSESSILLHKLFS 536
Query: 4433 PDAPQAMFDQYNGYFNPKPWKLRIAQGPTKCSR-GQFLPFCP 4311
P QA D Y+ + +P + L+ + P R FLPF P
Sbjct: 537 PPTLQAQHDTYHRHLHPGSYSLQWERTPLSIPRTTAFLPFTP 578
>gb|AAB92649.1| replicase protein [Turnip yellow mosaic virus]
Length = 1844
Score = 991 bits (2562), Expect = 0.0
Identities = 552/1162 (47%), Positives = 721/1162 (62%), Gaps = 16/1162 (1%)
Frame = -1
Query: 3749 DPSGFGEVSTFAQLYPDDYVLGCAEFFCRKRHHGVSTAPFPTMPCLLDAVGSCLGVTPAE 3570
DP+ G V F +L+P Y A F R R + P PT+ CLL AV V+
Sbjct: 739 DPTAIGPVLPFEELHPRKYPENTATFLTRLRSLPSNHLPQPTLNCLLSAVSDQTKVSEDH 798
Query: 3569 LWSTLCHHLPDSLLQNPQITSCGLSTDHLTALSHFYQFKAFVTSDQEPIPHPYGVDSAPT 3390
LW +L LPDS L+N +I S GLST+HLTAL+H Y F+A V SD+ PI +G
Sbjct: 799 LWESLQTILPDSQLRNEEINSLGLSTEHLTALAHLYNFQATVYSDRGPIL--FGPSDTIK 856
Query: 3389 TIRFSHTTGNPGHF-----FITSDPGAPPPPKXXXXXXXXXXXXXXLTTFRLNGELLPFQ 3225
I +HTTG P HF + S P A P +F+++G LPF
Sbjct: 857 RIDITHTTGPPSHFSPGKRLLGSQPSAKRHPSDSLIRAMK--------SFKVSGNYLPFS 908
Query: 3224 TVHNYRANVKRAKNLISNMKNGFDGVMATVDPQHPN----SAKEKFVTTDGILDIAKSRS 3057
HN+ ++ AKNL+SNMKNGFDGV++ +D + K+ + D LD ++
Sbjct: 909 EAHNHPTSISHAKNLVSNMKNGFDGVLSLLDVSTGQRTGPTPKDAIIQIDHYLDTNPGKT 968
Query: 3056 IKLIHIAGFPGCGKSYPIQRLLLTAPRARNFRISVPTAELRHEWKASMDLEPKNNWRIGT 2877
++H AGF GCGK+YPIQ+LL T ++FR+S PT ELR EWK +M+L +WR T
Sbjct: 969 TPVVHFAGFAGCGKTYPIQQLLKTK-LFKDFRVSCPTTELRTEWKTAMELHGSQSWRFNT 1027
Query: 2876 WEXXXXXXXXXLVVDEIYKMPRGYLDLAILMDPHLEMVIVLGDPLQGEYHSTHPQSSNHK 2697
WE LV+DEIYKMPRGYLDL+IL DP LE+VI+LGDPLQGEYHS SSNH+
Sbjct: 1028 WESSILKSSRILVIDEIYKMPRGYLDLSILADPALELVIILGDPLQGEYHSQSKDSSNHR 1087
Query: 2696 LSSEINHLRPYLDFYCAWTRRCPKLIADFFGVPTTSQEPGFCRPVNHLPMNCPILTNSHS 2517
L SE L PY+D YC W+ R P+ IA F + + + G V+ P+LTNSH+
Sbjct: 1088 LPSETLRLLPYIDMYCWWSYRIPQCIARLFRIHSFNAWQGVIGSVSTPHDQSPVLTNSHA 1147
Query: 2516 AALTLTEAHSRACTISASQGSTYSSPVVIHLDRHSSQLSNSMALVALTRSTKGVLFSGDQ 2337
++LT R+CTIS+SQG T+ P +I LD ++ LS++ LVALTRS GV F G
Sbjct: 1148 SSLTFNSLGYRSCTISSSQGLTFCDPAIIVLDNYTKWLSSANGLVALTRSRSGVQFMGPS 1207
Query: 2336 SILQPGPHSAKLFSQLTQFQSSHSPDDRYPIQTHFIEQLRGVTLISTPLKSR--KLVGAC 2163
S + S+ +FS F +S DRY F + LI++PL +R KL GA
Sbjct: 1208 SYVGGTNGSSAMFSD--AFNNSLIIMDRY-----FPSLFPQLKLITSPLTTRSPKLNGAA 1260
Query: 2162 PSEVKHSSTVRDFTHHAIRGSTVRDPSYQPSLAHVVRHTSPAIYHSELNRLHPDFKGDAV 1983
PS T R P++ H+ H P Y + ++P
Sbjct: 1261 PS----------------ASPTHRSPNF-----HLPPHI-PLSYDRDFVTVNPTLPDQGP 1298
Query: 1982 RSAVIVCGDGIDHLPRVSPHFIAETRLPYHSDMPSAM---PSQCSLSPPTFSAPVFEPVY 1812
+ R+ HF+ +RLP H D+P A+ P S+ PP A PVY
Sbjct: 1299 ET-------------RLDTHFLPPSRLPLHFDLPPAITPPPVSTSVDPPQAKA---SPVY 1342
Query: 1811 PGEDFETLASTFLPAHDPHLREIIFKGERSAQFPYLNQPFDLFLQPQTLIAAQHHGQKDS 1632
PGE F++LA+ FLPAHDP REI+ K + S QFP+ ++PF L QP +LI+A+H D
Sbjct: 1343 PGEFFDSLAAFFLPAHDPSTREILHKDQSSNQFPWFDRPFSLSCQPSSLISAKHAPNHDP 1402
Query: 1631 TLLPASIPKRLRFRRNSTPYVISPKDQLLGELLFISLCKAYNRHPSSVEPFDEALFADCI 1452
TLLPASI KRLRFR + P+ I+ D +LG LF SLC+AY+R P+S PF+ LFA+CI
Sbjct: 1403 TLLPASINKRLRFRPSEAPHQITADDVVLGLQLFHSLCRAYSRQPNSTVPFNPELFAECI 1462
Query: 1451 NLNEFAQLSSKTQTTIMANASRSDPDWRWSAVRIFSKSQHKTNEASIFGSWKACQTLALM 1272
+LNE+AQLSSKTQ+TI+ANASRSDPDWR + V+IF+K+QHK N+ SIFGSWKACQTLALM
Sbjct: 1463 SLNEYAQLSSKTQSTIVANASRSDPDWRHTTVKIFAKAQHKVNDGSIFGSWKACQTLALM 1522
Query: 1271 HDAVVLLLGPVKKYQRLFDNRDRPANIYVHASHTPFQMSDWCRENLS-SCEHVANDYTAF 1095
HD V+L+LGPVKKYQR+FDN DRP++IY H TP Q+ DWC+E+L+ S +ANDYTAF
Sbjct: 1523 HDYVILVLGPVKKYQRIFDNADRPSHIYSHCGKTPNQLRDWCQEHLTHSTPKIANDYTAF 1582
Query: 1094 DQSQHGEAVVLEIKKMRRLSIPEPLIQLHAYLKTNVTTQFGPLTCMRLTGEPGTYDDNTD 915
DQSQHGE+VVLE KM+RL+IP LIQLH +LKTNV+TQFGPLTCMRLTGEPGTYDDNTD
Sbjct: 1583 DQSQHGESVVLEALKMKRLNIPSHLIQLHVHLKTNVSTQFGPLTCMRLTGEPGTYDDNTD 1642
Query: 914 YNLAVIHSQYLMASIPHMVSGDDSLIDRQPLPNPL-WITIGPMLHLRFKLEVTRYPLFCG 738
YNLAVI+SQY + S P MVSGDDSLID PLP W ++ LHLRFKLE+T +PLFCG
Sbjct: 1643 YNLAVIYSQYDVGSCPIMVSGDDSLID-HPLPTRHDWPSVLKRLHLRFKLELTSHPLFCG 1701
Query: 737 YLVGPSGAVRSPITLFAKSLMALDDGSLDDKLASYLTEFSVGHSLGQEMWNLIPVEQVHY 558
Y VGP+G +R+P+ LF K ++A+DD +LDD+ SYLTEF+ GH LG+ +W+L+P V Y
Sbjct: 1702 YYVGPAGCIRNPLALFCKLMIAVDDDALDDRRLSYLTEFTTGHLLGESLWHLLPETHVQY 1761
Query: 557 QAALFDFFCRKASREQKLVLKIGEVPDTIISTILSSARAIARPLYAYLSSSARKLLLKGS 378
Q+A FDFFCR+ + +K++L +++ I SS R + + + L + R + S
Sbjct: 1762 QSACFDFFCRRCPKHEKMLLDDSTPTLSLLERITSSPRWLTKNVMYLLPAKLRLAITSLS 1821
Query: 377 KTYRPFDTEESLQFEGVLQHAV 312
+T ++ E + E L H V
Sbjct: 1822 QTQSFPESIEVSRAESELLHYV 1843
Score = 337 bits (863), Expect = 5e-89
Identities = 215/581 (37%), Positives = 290/581 (49%), Gaps = 35/581 (6%)
Frame = -1
Query: 5948 ESLSNTIHRDTVTSPLVEAVADPLRDSLEKYPYAVSPSLTSFLSKRGINISGYGAKTHPH 5769
++L+ T HRD P++E+ D +R S++ YP+++ L L+ GI SG G HPH
Sbjct: 8 DALAPTTHRDPSLHPILESTVDSIRSSIQTYPWSIPKELLPLLNSYGIPTSGLGTSHHPH 67
Query: 5768 PAHKNIENYILQDVWPNLIRNQSSVLFMKPSKFRKLEQKDSNFHELINYRLTPQDTTRYP 5589
AHK IE ++L W SSV+FMKPSKF KL Q +SNF EL NYRL P D+TRYP
Sbjct: 68 AAHKTIETFLLCTHWSFQATTPSSVMFMKPSKFSKLAQVNSNFRELKNYRLHPNDSTRYP 127
Query: 5588 SSSTTLPAHSTVFMHDALMYYTPGDIADLFLSAPHLTQLYATLVVPPESSFTDTSFFPEL 5409
+S LP T+FMHDALMYY P I DLFL P+L +LYA+LVVPPE+ +D SFFP+L
Sbjct: 128 FTSPDLPVFPTIFMHDALMYYHPSQIMDLFLQKPNLERLYASLVVPPEAHLSDQSFFPKL 187
Query: 5408 YNFHFHDTDLVYELEGNPSHHYIQPKSALDWLRTSTIRCSDLTLSISILESIGPVHHLLI 5229
Y + L Y EG+ + Y QP A WLR ++IR + LS++ILES GPVH LLI
Sbjct: 188 YTYTTTRHTLHYVPEGHEAGSYNQPSDAHSWLRINSIRLGNHHLSVTILESWGPVHSLLI 247
Query: 5228 QRGLAP--------------------KHRENTTRDFDTPDCFLLPAPTSLSQNVRDRLVP 5109
QRG P + F PD LP T L Q +RDRLVP
Sbjct: 248 QRGTPPPDPSLQAPSTLMASDLFRSYQEPRLDVVSFRIPDAIELPQATFLQQPLRDRLVP 307
Query: 5108 LAAYHSLRAYVMAVRTLRTTDPAGFVRTQSTKPEFAWVTAEAWDSLQNFALLTCNQRPAV 4929
A Y++L Y AVRTLRT+DPA FVR S+KP+ WVT+ AWD+LQ FALL RP V
Sbjct: 308 RAVYNALFTYTRAVRTLRTSDPAAFVRMHSSKPDHDWVTSNAWDNLQTFALLNVPLRPNV 367
Query: 4928 SYLTFASSFARI-----KHWXXXXXXXXXXXXXXXXXAVSFTTVKVAHY---CSTRQIDS 4773
Y S A + +HW +SF T+ ++ S
Sbjct: 368 VYHVLQSPIASLALYLRQHW--------RRLTATAVPILSFLTLLQRFLPLPIPLAEVKS 419
Query: 4772 LILFGKQIVRPSCPLN--SPFSLHQYFSRTAQLPPSLSTQLPRFELVTSPRIITKWSPCL 4599
+ F +++ R P + F L Q+ ++ P + + P + K + L
Sbjct: 420 ITAFRRELYRKKAPHHPLDVFHLQQHLRNYHSAISAVRPASPPHQRL--PHALQKAALLL 477
Query: 4598 AR----FLLSTPFFRTLTTQLNFLSKKCFFAKGFPHSRKLXXXXXXXXXILWAYRRFMGP 4431
R L +TPFFR+ + ++ + K F + + P
Sbjct: 478 LRPISPLLTATPFFRSEQKSMLPNAELSWTLKRFALPWQASLVLLALSESSILLHKLFSP 537
Query: 4430 DAPQAMFDQYNGYFNPKPWKLRIAQGPTKCSR-GQFLPFCP 4311
QA D Y+ + +P + L+ + P R FLPF P
Sbjct: 538 PTLQAQHDTYHRHLHPGSYSLQWERTPLSIPRTTAFLPFTP 578
>ref|NP_663297.1| replicase/papain-like protease [Turnip yellow mosaic virus]
gi|62224|emb|CAA30322.1| unnamed protein product [Turnip
yellow mosaic virus]
Length = 1844
Score = 988 bits (2555), Expect = 0.0
Identities = 553/1162 (47%), Positives = 716/1162 (61%), Gaps = 16/1162 (1%)
Frame = -1
Query: 3749 DPSGFGEVSTFAQLYPDDYVLGCAEFFCRKRHHGVSTAPFPTMPCLLDAVGSCLGVTPAE 3570
DP+ G V F +L+P Y A F R R + P PT+ CLL AV V+
Sbjct: 739 DPTAIGPVLPFEELHPRRYPENTATFLTRLRSLPSNHLPQPTLNCLLSAVSDQTKVSEEH 798
Query: 3569 LWSTLCHHLPDSLLQNPQITSCGLSTDHLTALSHFYQFKAFVTSDQEPIPHPYGVDSAPT 3390
LW +L LPDS L N + + GLST+HLTAL+H Y F+A V SD+ PI +G
Sbjct: 799 LWESLQTILPDSQLSNEETNTLGLSTEHLTALAHLYNFQATVYSDRGPIL--FGPSDTIK 856
Query: 3389 TIRFSHTTGNPGHF-----FITSDPGAPPPPKXXXXXXXXXXXXXXLTTFRLNGELLPFQ 3225
I +HTTG P HF + S P A P +F+++G LPF
Sbjct: 857 RIDITHTTGPPSHFSPGKRLLGSQPSAKGHPSDPLIRAMK--------SFKVSGNYLPFS 908
Query: 3224 TVHNYRANVKRAKNLISNMKNGFDGVMATVDPQHPNSA----KEKFVTTDGILDIAKSRS 3057
HN+ ++ AKNLISNMKNGFDGV++ +D KE+ + D LD ++
Sbjct: 909 EAHNHPTSISHAKNLISNMKNGFDGVLSLLDVSTGQRTGPXPKERIIQIDHYLDTNPGKT 968
Query: 3056 IKLIHIAGFPGCGKSYPIQRLLLTAPRARNFRISVPTAELRHEWKASMDLEPKNNWRIGT 2877
++H AGF GCGK+YPIQ+LL T ++FR+S PT ELR EWK +M+L +WR T
Sbjct: 969 TPVVHFAGFAGCGKTYPIQQLLKTK-LFKDFRVSCPTTELRTEWKTAMELHGSQSWRFNT 1027
Query: 2876 WEXXXXXXXXXLVVDEIYKMPRGYLDLAILMDPHLEMVIVLGDPLQGEYHSTHPQSSNHK 2697
WE LV+DEIYKMPRGYLDL+IL DP LE+VI+LGDPLQGEYHS SSNH+
Sbjct: 1028 WESSILKSSRILVIDEIYKMPRGYLDLSILADPALELVIILGDPLQGEYHSQSKDSSNHR 1087
Query: 2696 LSSEINHLRPYLDFYCAWTRRCPKLIADFFGVPTTSQEPGFCRPVNHLPMNCPILTNSHS 2517
L SE L PY+D YC W+ R P+ IA F + + + G V+ P+LTNSH+
Sbjct: 1088 LPSETLRLLPYIDMYCWWSYRIPQCIARLFQIHSFNAWQGVIGSVSTPHDQSPVLTNSHA 1147
Query: 2516 AALTLTEAHSRACTISASQGSTYSSPVVIHLDRHSSQLSNSMALVALTRSTKGVLFSGDQ 2337
++LT R+CTIS+SQG T+ P +I LD ++ LS++ LVALTRS GV F
Sbjct: 1148 SSLTFNSLGYRSCTISSSQGLTFCDPAIIVLDNYTKWLSSANGLVALTRSRSGVQFMXPS 1207
Query: 2336 SILQPGPHSAKLFSQLTQFQSSHSPDDRYPIQTHFIEQLRGVTLISTPLKSR--KLVGAC 2163
S + S+ +FS F +S DRY F + LI++PL +R KL GA
Sbjct: 1208 SYVGGTNGSSAMFSD--AFNNSLIIMDRY-----FPSLFPQLKLITSPLTTRGPKLNGAT 1260
Query: 2162 PSEVKHSSTVRDFTHHAIRGSTVRDPSYQPSLAHVVRHTSPAIYHSELNRLHPDFKGDAV 1983
PS T R P++ H+ H P Y + ++P
Sbjct: 1261 PS----------------ASPTHRSPNF-----HLPPHI-PLSYDRDFVTVNPTLPDQGP 1298
Query: 1982 RSAVIVCGDGIDHLPRVSPHFIAETRLPYHSDMPSAM---PSQCSLSPPTFSAPVFEPVY 1812
+ R+ HF+ +RLP H D+P A+ P S+ PP A PVY
Sbjct: 1299 ET-------------RLDTHFLPPSRLPLHFDLPPAITPPPVSTSVDPPQAKA---SPVY 1342
Query: 1811 PGEDFETLASTFLPAHDPHLREIIFKGERSAQFPYLNQPFDLFLQPQTLIAAQHHGQKDS 1632
PGE F++LA+ FLPAHDP REI+ K + S QFP+ ++PF L QP +LI+A+H D
Sbjct: 1343 PGEFFDSLAAFFLPAHDPSTREILHKDQSSNQFPWFDRPFSLSCQPSSLISAKHAPNHDP 1402
Query: 1631 TLLPASIPKRLRFRRNSTPYVISPKDQLLGELLFISLCKAYNRHPSSVEPFDEALFADCI 1452
TLLPASI KRLRFR + +P+ I+ D +LG LF SLC+AY+R P+S PF+ LFA+CI
Sbjct: 1403 TLLPASINKRLRFRPSDSPHQITADDVVLGLQLFHSLCRAYSRQPNSTVPFNPELFAECI 1462
Query: 1451 NLNEFAQLSSKTQTTIMANASRSDPDWRWSAVRIFSKSQHKTNEASIFGSWKACQTLALM 1272
+LNE+AQLSSKTQ+TI+ANASRSDPDWR + V+IF+K+QHK N+ SIFGSWKACQTLALM
Sbjct: 1463 SLNEYAQLSSKTQSTIVANASRSDPDWRHTTVKIFAKAQHKVNDGSIFGSWKACQTLALM 1522
Query: 1271 HDAVVLLLGPVKKYQRLFDNRDRPANIYVHASHTPFQMSDWCRENLS-SCEHVANDYTAF 1095
HD V+L+LGPVKKYQR+FDN DRP NIY H TP Q+ DWC+E+L+ S +ANDYTAF
Sbjct: 1523 HDYVILVLGPVKKYQRIFDNADRPPNIYSHCGKTPNQLRDWCQEHLTHSTPKIANDYTAF 1582
Query: 1094 DQSQHGEAVVLEIKKMRRLSIPEPLIQLHAYLKTNVTTQFGPLTCMRLTGEPGTYDDNTD 915
DQSQHGE+VVLE KM+RL+IP LIQLH +LKTNV+TQFGPLTCMRLTGEPGTYDDNTD
Sbjct: 1583 DQSQHGESVVLEALKMKRLNIPSHLIQLHVHLKTNVSTQFGPLTCMRLTGEPGTYDDNTD 1642
Query: 914 YNLAVIHSQYLMASIPHMVSGDDSLIDRQPLPNPL-WITIGPMLHLRFKLEVTRYPLFCG 738
YNLAVI+SQY + S P MVSGDDSLID PLP W ++ LHLRFKLE+T +PLFCG
Sbjct: 1643 YNLAVIYSQYDVGSCPIMVSGDDSLID-HPLPTRHDWPSVLKRLHLRFKLELTSHPLFCG 1701
Query: 737 YLVGPSGAVRSPITLFAKSLMALDDGSLDDKLASYLTEFSVGHSLGQEMWNLIPVEQVHY 558
Y VGP+G +R+P+ LF K ++A+DD +LDD+ SYLTEF+ GH LG+ +W+L+P V Y
Sbjct: 1702 YYVGPAGCIRNPLALFCKLMIAVDDDALDDRRLSYLTEFTTGHLLGESLWHLLPETHVQY 1761
Query: 557 QAALFDFFCRKASREQKLVLKIGEVPDTIISTILSSARAIARPLYAYLSSSARKLLLKGS 378
Q+A FDFFCR+ R +K++L +++ I SS R + + L + R + S
Sbjct: 1762 QSACFDFFCRRCPRHEKMLLDDSTPALSLLERITSSPRWLTKNAMYLLPAKLRLAITSLS 1821
Query: 377 KTYRPFDTEESLQFEGVLQHAV 312
+T ++ E E L H V
Sbjct: 1822 QTQSFPESIEVSHAESELLHYV 1843
Score = 333 bits (855), Expect = 5e-88
Identities = 215/582 (36%), Positives = 291/582 (50%), Gaps = 36/582 (6%)
Frame = -1
Query: 5948 ESLSNTIHRDTVTSPLVEAVADPLRDSLEKYPYAVSPSLTSFLSKRGINISGYGAKTHPH 5769
++L+ T HRD P++E+ D +R S++ YP+++ L L+ GI SG G HPH
Sbjct: 8 DALAPTTHRDPSLHPILESTVDSIRSSIQTYPWSIPKELLPLLNSYGIPTSGLGTSHHPH 67
Query: 5768 PAHKNIENYILQDVWPNLIRNQSSVLFMKPSKFRKLEQKDSNFHELINYRLTPQDTTRYP 5589
AHK IE ++L W SSV+FMKPSKF KL Q +SNF EL NYRL P D+TRYP
Sbjct: 68 AAHKTIETFLLCTHWSFQATTPSSVMFMKPSKFNKLAQVNSNFRELKNYRLHPNDSTRYP 127
Query: 5588 SSSTTLPAHSTVFMHDALMYYTPGDIADLFLSAPHLTQLYATLVVPPESSFTDTSFFPEL 5409
+S LP T+FMHDALMYY P I DLFL P+L +LYA+LVVPPE+ +D SF+P+L
Sbjct: 128 FTSPDLPVFPTIFMHDALMYYHPSQIMDLFLRKPNLERLYASLVVPPEAHLSDQSFYPKL 187
Query: 5408 YNFHFHDTDLVYELEGNPSHHYIQPKSALDWLRTSTIRCSDLTLSISILESIGPVHHLLI 5229
Y + L Y EG+ + Y QP A WLR ++IR + LS++ILES GPVH LLI
Sbjct: 188 YTYTTTRHTLHYVPEGHEAGSYNQPSDAHSWLRINSIRLGNHHLSVTILESWGPVHSLLI 247
Query: 5228 QRGLAP--------------------KHRENTTRDFDTPDCFLLPAPTSLSQNVRDRLVP 5109
QRG P + F PD LP T L Q +RDRLVP
Sbjct: 248 QRGTPPPDPSLQAPPTLMXSDLFRSYQEPRLDVVSFRIPDAIELPQATFLQQPLRDRLVP 307
Query: 5108 LAAYHSLRAYVMAVRTLRTTDPAGFVRTQSTKPEFAWVTAEAWDSLQNFALLTCNQRPAV 4929
A Y++L Y AVRTLRT+DPA FVR S+KP+ WVT+ AWD+LQ FALL RP V
Sbjct: 308 RAVYNALFTYTRAVRTLRTSDPAAFVRMHSSKPDHDWVTSNAWDNLQTFALLNVPLRPNV 367
Query: 4928 SYLTFASSFARI-----KHWXXXXXXXXXXXXXXXXXAVSFTTVKVAHY---CSTRQIDS 4773
Y S A + +HW +SF T+ ++ S
Sbjct: 368 VYHVLQSPIASLSLYLRQHW--------RRLTATAVPILSFLTLLQRFLPLPIPLAEVKS 419
Query: 4772 LILFGKQIVR---PSCPLNSPFSLHQYFSRTAQLPPSLSTQLPRFELVTSPRIITKWSPC 4602
+ F +++ R P PL+ H+ + + + P +L P + K +
Sbjct: 420 ITAFRRELYRKKEPHHPLDVFHLQHRVRNYHSAISAVRPASPPHQKL---PHALQKAALL 476
Query: 4601 LAR----FLLSTPFFRTLTTQLNFLSKKCFFAKGFPHSRKLXXXXXXXXXILWAYRRFMG 4434
L R L +TPFFR+ + ++ + K F + +
Sbjct: 477 LLRPISPLLTATPFFRSEQKSMLPNAELSWTLKRFALPWQASLVLLALSESSILLHKLFS 536
Query: 4433 PDAPQAMFDQYNGYFNPKPWKLRIAQGPTKCSR-GQFLPFCP 4311
P QA D Y+ + +P + L+ + P R FLPF P
Sbjct: 537 PPTLQAQHDTYHRHLHPGSYSLQWERTPLSIPRTTAFLPFTP 578
>ref|YP_002048673.1| replicase-associated protein RP [Diascia yellow mottle virus]
gi|194295001|gb|ACF40325.1| replicase-associated protein
RP [Diascia yellow mottle virus]
Length = 1790
Score = 988 bits (2554), Expect = 0.0
Identities = 550/1141 (48%), Positives = 701/1141 (61%), Gaps = 12/1141 (1%)
Frame = -1
Query: 3764 STLILDPSGFGEVSTFAQLYPDDYVLGCAEFFCRKRHHGVSTAPFPTMPCLLDAVGSCLG 3585
S L+ DPS G V F L+P Y F R+R S+AP P CLL ++ LG
Sbjct: 684 SDLLSDPSCVGPVVEFECLFPGVYHNSNGTFLTRQRAQASSSAPLPAKRCLLTSISPQLG 743
Query: 3584 VTPAELWSTLCHHLPDSLLQNPQITSCGLSTDHLTALSHFYQFKAFVTSDQEPIPHPYGV 3405
V A LW+ LC LPDSLL NP+I + GLSTDHLTAL+ F+ + + +P Y
Sbjct: 744 VPEATLWNYLCEMLPDSLLDNPEIRNYGLSTDHLTALASRLNFECVIHTGHTTLP--YSC 801
Query: 3404 DSAPTTIRFSHTTGNPGHF-----FITSDPGAPPPPKXXXXXXXXXXXXXXLTTFRLNGE 3240
A T ++ + G P HF S PG+ P F+LNG+
Sbjct: 802 VGASTRVQITFHPGPPKHFSPNIRLSASAPGSNPSKSPLVRAALR---------FQLNGD 852
Query: 3239 LLPFQTVHNYRANVKRAKNLISNMKNGFDGVMATVDPQHPNSAKEKFVTTDGILDIAKSR 3060
LPF H ++ +V AKNL+SNMKNGFDG+ + + S K+K + D +D+A R
Sbjct: 853 FLPFMNSHKHKVSVPHAKNLVSNMKNGFDGITSQLSESSGRSPKQKLLELDATIDVAFPR 912
Query: 3059 SIKLIHIAGFPGCGKSYPIQRLLLTAPRARNFRISVPTAELRHEWKASMDLEPKNNWRIG 2880
+ +IHIAGFPGCGKS+P+Q+LL T R+FR+SVPT ELR EWK+ M L WR+
Sbjct: 913 EVDVIHIAGFPGCGKSHPVQKLLQTKA-FRHFRLSVPTNELRTEWKSDMSLPESEIWRLC 971
Query: 2879 TWEXXXXXXXXXLVVDEIYKMPRGYLDLAILMDPHLEMVIVLGDPLQGEYHSTHPQSSNH 2700
TWE LV+DEIYK+PRGYLDLA+L DP +VI+LGDPLQGEYHS+HP SSN+
Sbjct: 972 TWETSLFKSSSILVIDEIYKLPRGYLDLALLADPSTSLVILLGDPLQGEYHSSHPSSSNN 1031
Query: 2699 KLSSEINHLRPYLDFYCAWTRRCPKLIADFFGVPTTSQEPGFCRPVNHLPMNCPILTNSH 2520
+L SE + L Y+D YC WT RCP+ +AD FGV T + E GF R P P L NS
Sbjct: 1032 RLESETSRLSKYIDCYCWWTYRCPRAVADLFGVKTFNTEQGFIRGELSHPQGLPNLVNSI 1091
Query: 2519 SAALTLTEAHSRACTISASQGSTYSSPVVIHLDRHSSQLSNSMALVALTRSTKGVLFSGD 2340
+ A T+ A TIS+SQG TYSSP I LDRHS+ LS VALTRS KG++F G+
Sbjct: 1092 ATATTMQNLGHHALTISSSQGMTYSSPTTILLDRHSTLLSPQNCFVALTRSRKGIIFIGN 1151
Query: 2339 QSILQPGPHSAKLFSQLTQFQSSHSPDD---RYPIQTHFIEQLRGVTLISTPLKSRK--L 2175
++ +F+Q + SP D +P+ + LI P+KSR+ L
Sbjct: 1152 MYQASGYFGTSYMFTQAL----TGSPVDLMCAFPLY-------HTLPLIFDPIKSRRQRL 1200
Query: 2174 VGACPSEVKHS-STVRDFTHHAIRGSTVRDPSYQPSLAHVVRHTSPAIYHSELNRLHPDF 1998
V P + S S +R++ R P + P+ D+
Sbjct: 1201 VAGDPLPISTSESAIRNYG---------RLPPHIPT----------------------DY 1229
Query: 1997 KGDAVRSAVIVCGDGIDH-LPRVSPHFIAETRLPYHSDMPSAMPSQCSLSPPTFSAPVFE 1821
D S+ +V +G D LP + + +RLP H A PS+ LS S
Sbjct: 1230 AKDCFVSSQVVFSEGEDRTLPTLH---LPPSRLPLHLLTEPAAPSEVLLSETEPSKSPIT 1286
Query: 1820 PVYPGEDFETLASTFLPAHDPHLREIIFKGERSAQFPYLNQPFDLFLQPQTLIAAQHHGQ 1641
GE FE LA+ FLPAHDP L+EIIF + S+QFP+L+ PF+L QP +L+AA H
Sbjct: 1287 LALLGESFEELAAHFLPAHDPELKEIIFADQSSSQFPFLDVPFELSCQPSSLLAASHRPA 1346
Query: 1640 KDSTLLPASIPKRLRFRRNSTPYVISPKDQLLGELLFISLCKAYNRHPSSVEPFDEALFA 1461
D TLL +SI KRLRFR + PY IS D LLG+ LF SLC+A+NR P V PFD LFA
Sbjct: 1347 SDPTLLVSSIKKRLRFRPSDCPYFISSNDILLGQHLFNSLCRAFNRSPLEVIPFDPVLFA 1406
Query: 1460 DCINLNEFAQLSSKTQTTIMANASRSDPDWRWSAVRIFSKSQHKTNEASIFGSWKACQTL 1281
+CI LNE+AQLSSKT+ TI+ANASRSDPDWR++AVRIF+K+QHK N+ SIFGSWKACQTL
Sbjct: 1407 ECIALNEYAQLSSKTKATIVANASRSDPDWRFTAVRIFAKAQHKVNDGSIFGSWKACQTL 1466
Query: 1280 ALMHDAVVLLLGPVKKYQRLFDNRDRPANIYVHASHTPFQMSDWCRENLSSCEHVANDYT 1101
ALMHD V++ LGPVKKYQR+ D++DRP++IY H TP Q+S WC++ + NDYT
Sbjct: 1467 ALMHDYVIMTLGPVKKYQRILDHQDRPSHIYTHCGKTPAQLSSWCQKFSLDGPSLCNDYT 1526
Query: 1100 AFDQSQHGEAVVLEIKKMRRLSIPEPLIQLHAYLKTNVTTQFGPLTCMRLTGEPGTYDDN 921
+FDQSQHGEAVVLE KMRR SIP+ LIQLH +LKTN++TQFGPLTCMRLTGEPGTYDDN
Sbjct: 1527 SFDQSQHGEAVVLECLKMRRCSIPDNLIQLHLHLKTNISTQFGPLTCMRLTGEPGTYDDN 1586
Query: 920 TDYNLAVIHSQYLMASIPHMVSGDDSLIDRQPLPNPLWITIGPMLHLRFKLEVTRYPLFC 741
TDYNLAVI+SQY M + P MVSGDDS+I P +P W + +LHLRFK E T PLFC
Sbjct: 1587 TDYNLAVIYSQYQMGATPCMVSGDDSVIFANPPIHPTWPAVENLLHLRFKTESTTQPLFC 1646
Query: 740 GYLVGPSGAVRSPITLFAKSLMALDDGSLDDKLASYLTEFSVGHSLGQEMWNLIPVEQVH 561
GY VGPSG R+P+ LFAK ++ D G+LDD L+SYL E+S+GH LG +L+P
Sbjct: 1647 GYYVGPSGCCRNPLALFAKLMITTDKGNLDDTLSSYLYEYSIGHRLGDACLSLLPSHLHS 1706
Query: 560 YQAALFDFFCRKASREQKLVLKIGEVPDTIISTILSSARAIARPLYAYLSSSARKLLLKG 381
YQ+A FDFFCRKAS QK +L E +++ + SS+ + PL A L + + + LL+
Sbjct: 1707 YQSACFDFFCRKASPLQKTLLSFEEPSPSLLKKLASSSAWASGPLLAQLDNDSLQSLLER 1766
Query: 380 S 378
S
Sbjct: 1767 S 1767
Score = 336 bits (862), Expect = 7e-89
Identities = 175/353 (49%), Positives = 225/353 (63%), Gaps = 6/353 (1%)
Frame = -1
Query: 5948 ESLSNTIHRDTVTSPLVEAVADPLRDSLEKYPYAVSPSLTSFLSKRGINISGYGAKTHPH 5769
E+LS T HRD+ +P++ PL+ SL+ +P+ ++ FL+ GI +SG+G HPH
Sbjct: 8 EALSTTSHRDSSLNPVLYHSVSPLQRSLDLFPWIITRDALPFLNSCGIPVSGFGTTPHPH 67
Query: 5768 PAHKNIENYILQDVWPNLIRNQSSVLFMKPSKFRKLEQKDSNFHELINYRLTPQDTTRYP 5589
HK IE ++L W +L SSV+FMKPSKFRKL + NF EL N+RLTP DT RYP
Sbjct: 68 AVHKAIETFLLFSHWSSLASTLSSVMFMKPSKFRKLAAINPNFDELTNFRLTPADTVRYP 127
Query: 5588 SSSTTLPAHSTVFMHDALMYYTPGDIADLFLSAPHLTQLYATLVVPPESSFTDTSFFPEL 5409
++S++LP H VFMHDALMY+TP I DLF P L +L+ +LVVPPESSFTD S FP +
Sbjct: 128 TTSSSLPQHEIVFMHDALMYFTPHQIVDLFERCPLLNRLHCSLVVPPESSFTDLSLFPTI 187
Query: 5408 YNFHFHDTDLVYELEGNPSHHYIQPKSALDWLRTSTIRCSDLTLSISILESIGPVHHLLI 5229
Y + + +L Y EG+ + Y QP+SA+ WL+ I LS++ILES GPVH +LI
Sbjct: 188 YTYQLNSNNLHYTPEGHHAGSYDQPRSAIRWLKLRRITSPFFNLSVTILESWGPVHSILI 247
Query: 5228 QRG------LAPKHRENTTRDFDTPDCFLLPAPTSLSQNVRDRLVPLAAYHSLRAYVMAV 5067
QRG LAP H F P +LP T L+Q +R R+VP Y +L Y AV
Sbjct: 248 QRGLPISDSLAPPH-----ASFKVPQARVLPEATFLNQPLRHRMVPSEVYDALFTYTRAV 302
Query: 5066 RTLRTTDPAGFVRTQSTKPEFAWVTAEAWDSLQNFALLTCNQRPAVSYLTFAS 4908
RTLRT+DPAGFVRT S KP+ AWVT +AWD+LQ +ALL RP V Y F S
Sbjct: 303 RTLRTSDPAGFVRTHSNKPKHAWVTPQAWDNLQTYALLNAPVRPRVVYNFFLS 355
>sp|P20128.1|POLR_TYMVA RecName: Full=RNA replicase polyprotein gi|332246|gb|AAA46592.1|
replicase polyprotein [Turnip yellow mosaic virus]
Length = 1844
Score = 986 bits (2548), Expect = 0.0
Identities = 548/1162 (47%), Positives = 718/1162 (61%), Gaps = 16/1162 (1%)
Frame = -1
Query: 3749 DPSGFGEVSTFAQLYPDDYVLGCAEFFCRKRHHGVSTAPFPTMPCLLDAVGSCLGVTPAE 3570
DP+ G V F +L+P Y A F R R + P PT+ CLL AV V+
Sbjct: 739 DPTAIGPVLPFEELHPRRYPENTATFLTRLRSLPSNHLPQPTLNCLLSAVSDQTKVSEDH 798
Query: 3569 LWSTLCHHLPDSLLQNPQITSCGLSTDHLTALSHFYQFKAFVTSDQEPIPHPYGVDSAPT 3390
LW +L LPDS L+N +I S GLST+HLTAL+H Y F+A + SD+ PI +G
Sbjct: 799 LWESLQTILPDSQLRNEEINSLGLSTEHLTALAHLYNFQATIYSDRGPIL--FGPSDTIK 856
Query: 3389 TIRFSHTTGNPGHF-----FITSDPGAPPPPKXXXXXXXXXXXXXXLTTFRLNGELLPFQ 3225
I +HTTG P HF + S P A P +F+++G LPF
Sbjct: 857 RIDITHTTGPPSHFSPGKRLLGSQPSAKGHPSDSLIRAMK--------SFKVSGNYLPFS 908
Query: 3224 TVHNYRANVKRAKNLISNMKNGFDGVMATVDPQHPN----SAKEKFVTTDGILDIAKSRS 3057
HN+ ++ AKNL+SNMKNGFDG+++ +D + K+ + D LD ++
Sbjct: 909 EAHNHPTSISHAKNLVSNMKNGFDGILSLLDVSTGQRTGPTPKDAIIQIDHYLDTNPGKT 968
Query: 3056 IKLIHIAGFPGCGKSYPIQRLLLTAPRARNFRISVPTAELRHEWKASMDLEPKNNWRIGT 2877
++H AGF GCGK+YPIQ+LL T ++FR+S PT ELR EWK +M+L +WR T
Sbjct: 969 TPVVHFAGFAGCGKTYPIQQLLKTK-LFKDFRVSCPTTELRTEWKTAMELHGSQSWRFNT 1027
Query: 2876 WEXXXXXXXXXLVVDEIYKMPRGYLDLAILMDPHLEMVIVLGDPLQGEYHSTHPQSSNHK 2697
WE LV+DEIYKMPRGYLDL+IL DP LE+VI+LGDPLQGEYHS SSNH+
Sbjct: 1028 WESSILKSSRILVIDEIYKMPRGYLDLSILADPALELVIILGDPLQGEYHSQSKDSSNHR 1087
Query: 2696 LSSEINHLRPYLDFYCAWTRRCPKLIADFFGVPTTSQEPGFCRPVNHLPMNCPILTNSHS 2517
L SE L PY+D YC W+ R P+ IA F + + + G V+ P+LTNSH+
Sbjct: 1088 LPSETLRLLPYIDMYCWWSYRIPQCIARLFQIHSFNAWQGIIGSVSTPQDQSPVLTNSHA 1147
Query: 2516 AALTLTEAHSRACTISASQGSTYSSPVVIHLDRHSSQLSNSMALVALTRSTKGVLFSGDQ 2337
++LT R+CTIS+SQG T+ P +I LD ++ LS++ LVALTRS GV F G
Sbjct: 1148 SSLTFNSLGYRSCTISSSQGLTFCDPAIIVLDNYTKWLSSANGLVALTRSRSGVQFMGPS 1207
Query: 2336 SILQPGPHSAKLFSQLTQFQSSHSPDDRYPIQTHFIEQLRGVTLISTPLKSR--KLVGAC 2163
S + S+ +FS F +S DRY F + LI++PL +R KL GA
Sbjct: 1208 SYVGGTNGSSAMFSD--AFNNSLIIMDRY-----FPSLFPQLKLITSPLTTRSPKLNGAT 1260
Query: 2162 PSEVKHSSTVRDFTHHAIRGSTVRDPSYQPSLAHVVRHTSPAIYHSELNRLHPDFKGDAV 1983
PS T R P++ H+ H P Y + ++P
Sbjct: 1261 PS----------------ASPTHRSPNF-----HLPPHI-PLSYDRDFVTVNPTLPDQGP 1298
Query: 1982 RSAVIVCGDGIDHLPRVSPHFIAETRLPYHSDMPSAM---PSQCSLSPPTFSAPVFEPVY 1812
+ R+ HF+ +RLP H D+P A+ P S+ PP A PVY
Sbjct: 1299 ET-------------RLDTHFLPPSRLPLHFDLPPAITPPPISTSVDPPQAKA---SPVY 1342
Query: 1811 PGEDFETLASTFLPAHDPHLREIIFKGERSAQFPYLNQPFDLFLQPQTLIAAQHHGQKDS 1632
PGE F++LA+ FLPAHDP RE++ K + S QFP+ ++PF L QP +LI+A+H D
Sbjct: 1343 PGEFFDSLAAFFLPAHDPSTREVLHKDQSSNQFPWFDRPFSLSCQPSSLISAKHAPNHDP 1402
Query: 1631 TLLPASIPKRLRFRRNSTPYVISPKDQLLGELLFISLCKAYNRHPSSVEPFDEALFADCI 1452
TLLPASI KRLRFR + P+ I+ D +LG LF SLC+AY+R P+ PF+ LFA+CI
Sbjct: 1403 TLLPASINKRLRFRPSEAPHQITADDVVLGLQLFHSLCRAYSRQPNITVPFNPELFAECI 1462
Query: 1451 NLNEFAQLSSKTQTTIMANASRSDPDWRWSAVRIFSKSQHKTNEASIFGSWKACQTLALM 1272
+LNE+AQLSSKTQ+TI+ANASRSDPDWR + V+IF+K+QHK N+ SIFGSWKACQTLALM
Sbjct: 1463 SLNEYAQLSSKTQSTIVANASRSDPDWRHTTVKIFAKAQHKVNDGSIFGSWKACQTLALM 1522
Query: 1271 HDAVVLLLGPVKKYQRLFDNRDRPANIYVHASHTPFQMSDWCRENLS-SCEHVANDYTAF 1095
HD V+L+LGPVKKYQR+FDN DRP++IY H TP Q+ DWC+E+L+ S +ANDYTAF
Sbjct: 1523 HDYVILVLGPVKKYQRIFDNVDRPSHIYSHCGKTPNQLRDWCQEHLTHSTPKIANDYTAF 1582
Query: 1094 DQSQHGEAVVLEIKKMRRLSIPEPLIQLHAYLKTNVTTQFGPLTCMRLTGEPGTYDDNTD 915
DQSQHGE+VVLE KM+RL+IP LIQLH +LKTNV+TQFGPLTCMRLTGEPGTYDDNTD
Sbjct: 1583 DQSQHGESVVLEALKMKRLNIPSHLIQLHVHLKTNVSTQFGPLTCMRLTGEPGTYDDNTD 1642
Query: 914 YNLAVIHSQYLMASIPHMVSGDDSLIDRQPLPNPL-WITIGPMLHLRFKLEVTRYPLFCG 738
YNLAVI+SQY + S P MVSGDDSLID PLP W ++ LHLRFKLE+T +PLFCG
Sbjct: 1643 YNLAVIYSQYDVGSCPIMVSGDDSLID-HPLPTRHDWPSVLKRLHLRFKLELTSHPLFCG 1701
Query: 737 YLVGPSGAVRSPITLFAKSLMALDDGSLDDKLASYLTEFSVGHSLGQEMWNLIPVEQVHY 558
Y VGP+G +R+P+ LF K ++A+DD +LDD+ SYLTEF+ GH LG+ +W+L+P V Y
Sbjct: 1702 YYVGPAGCIRNPLALFCKLMIAVDDDALDDRRLSYLTEFTTGHLLGESLWHLLPETHVQY 1761
Query: 557 QAALFDFFCRKASREQKLVLKIGEVPDTIISTILSSARAIARPLYAYLSSSARKLLLKGS 378
Q+A FDFFCR+ + +K++L +++ I SS R + + L + R + S
Sbjct: 1762 QSACFDFFCRRCPKHEKMLLDDSTPTLSLLERITSSPRWLTKNAMYLLPAKLRLAITSLS 1821
Query: 377 KTYRPFDTEESLQFEGVLQHAV 312
+T ++ E E L H V
Sbjct: 1822 QTQSFPESIEVSHAESELLHYV 1843
Score = 337 bits (864), Expect = 4e-89
Identities = 215/581 (37%), Positives = 290/581 (49%), Gaps = 35/581 (6%)
Frame = -1
Query: 5948 ESLSNTIHRDTVTSPLVEAVADPLRDSLEKYPYAVSPSLTSFLSKRGINISGYGAKTHPH 5769
++L+ T HRD P++E+ D +R S++ YP+++ L L+ GI SG G HPH
Sbjct: 8 DALAPTTHRDPSLHPILESTVDSIRSSIQTYPWSIPKELLPLLNSYGIPTSGLGTSHHPH 67
Query: 5768 PAHKNIENYILQDVWPNLIRNQSSVLFMKPSKFRKLEQKDSNFHELINYRLTPQDTTRYP 5589
AHK IE ++L W SSV+FMKPSKF KL Q +SNF EL NYRL P D+TRYP
Sbjct: 68 AAHKTIETFLLCTHWSFQATTPSSVMFMKPSKFNKLAQVNSNFRELKNYRLHPNDSTRYP 127
Query: 5588 SSSTTLPAHSTVFMHDALMYYTPGDIADLFLSAPHLTQLYATLVVPPESSFTDTSFFPEL 5409
+S LP T+FMHDALMYY P I DLFL P+L +LYA+LVVPPE+ +D SFFP+L
Sbjct: 128 FTSPDLPVFPTIFMHDALMYYHPSQIMDLFLQKPNLERLYASLVVPPEAHLSDQSFFPKL 187
Query: 5408 YNFHFHDTDLVYELEGNPSHHYIQPKSALDWLRTSTIRCSDLTLSISILESIGPVHHLLI 5229
Y + L Y EG+ + Y QP A WLR ++IR + LS++ILES GPVH LLI
Sbjct: 188 YTYTTTRHTLHYVPEGHEAGSYNQPSDAHSWLRINSIRLGNHHLSVTILESWGPVHSLLI 247
Query: 5228 QRGLAP--------------------KHRENTTRDFDTPDCFLLPAPTSLSQNVRDRLVP 5109
QRG P + F PD LP T L Q +RDRLVP
Sbjct: 248 QRGTPPPDPSLQAPSTPMASDLFRSYQEPRLDVVSFRIPDAIELPQATFLQQPLRDRLVP 307
Query: 5108 LAAYHSLRAYVMAVRTLRTTDPAGFVRTQSTKPEFAWVTAEAWDSLQNFALLTCNQRPAV 4929
A Y++L Y AVRTLRT+DPA FVR S+KP+ WVT+ AWD+LQ FALL RP V
Sbjct: 308 RAVYNALFTYTRAVRTLRTSDPAAFVRMHSSKPDHDWVTSNAWDNLQTFALLNVPLRPNV 367
Query: 4928 SYLTFASSFARI-----KHWXXXXXXXXXXXXXXXXXAVSFTTVKVAHY---CSTRQIDS 4773
Y S A + +HW +SF T+ ++ S
Sbjct: 368 VYHVLQSPIASLALYLRQHW--------RRLTATAVPILSFLTLLQRFLPLPIPLAEVKS 419
Query: 4772 LILFGKQIVRPSCPLN--SPFSLHQYFSRTAQLPPSLSTQLPRFELVTSPRIITKWSPCL 4599
+ F +++ R P + F L Q+ ++ P + + P + K + L
Sbjct: 420 ITAFRRELYRKKAPHHPLDVFHLQQHLRNHHSAISAVRPASPPHQRL--PHALQKAALLL 477
Query: 4598 AR----FLLSTPFFRTLTTQLNFLSKKCFFAKGFPHSRKLXXXXXXXXXILWAYRRFMGP 4431
R L +TPFFR+ + ++ + K F + + P
Sbjct: 478 LRPISPLLTATPFFRSEQKSMLPNAELSWTLKRFALPWQASLVLLSLSESSVLLHKLFSP 537
Query: 4430 DAPQAMFDQYNGYFNPKPWKLRIAQGPTKCSR-GQFLPFCP 4311
QA D Y+ + +P + L+ + P R FLPF P
Sbjct: 538 PTLQAQHDTYHRHLHPGSYSLQWERTPLSIPRTTAFLPFTP 578
>ref|YP_007517180.1| viral replication protein [Andean potato latent virus]
gi|452883301|gb|AGG15964.1| viral replication protein
[Andean potato latent virus]
Length = 1831
Score = 982 bits (2538), Expect = 0.0
Identities = 538/1145 (46%), Positives = 710/1145 (62%), Gaps = 11/1145 (0%)
Frame = -1
Query: 3758 LILDPSGFGEVSTFAQLYPDDYVLGCAEFFCRKRHHGVSTAPFPTMPCLLDAVGSCLGVT 3579
L+ DP+ G+V F +P Y A F R R S P P + CLL+
Sbjct: 717 LMADPTCAGDVIPFHNAFPGLYFSNTASFPTRIRILPSSNLPVPALNCLLETFSQLTHYP 776
Query: 3578 PAELWSTLCHHLPDSLLQNPQITSCGLSTDHLTALSHFYQFKAFVTSDQEPIPHPYGVDS 3399
LW +LC LPD LL N +I + GLSTD LTAL Y + + + HPYG+ +
Sbjct: 777 VLSLWQSLCSMLPDCLLDNEEIRTVGLSTDLLTALCFTYHIQCILHTPSGN--HPYGMPA 834
Query: 3398 APTTIRFSHTTGNPGHF-----FITSDPGAPPPPKXXXXXXXXXXXXXXLTTFRLNGELL 3234
+ T+I + G P HF FI S PG+ P + F+ NG L
Sbjct: 835 SSTSIEIDYLPGPPRHFSPHNRFIASAPGSNPSSEPLVREALR---------FKHNGHFL 885
Query: 3233 PFQTVHNYRANVKRAKNLISNMKNGFDGVMATVDPQHPNSA--KEKFVTTDGILDIAKSR 3060
PF H + +++ AKNLISNMKNGFDG+M ++ +S K++ +T D I D+A+ R
Sbjct: 886 PFHQAHLHSVSLQHAKNLISNMKNGFDGIMHSISTSSSSSPSPKQQILTLDSICDVAQPR 945
Query: 3059 SIKLIHIAGFPGCGKSYPIQRLLLTAPRARNFRISVPTAELRHEWKASMDLEPKNNWRIG 2880
++ +IHIAGF GCGK++PIQ+LL + P ++FRIS PT ELR EWK MD P N WR
Sbjct: 946 TVPVIHIAGFAGCGKTHPIQKLLASKP-FKDFRISTPTNELRSEWKRDMDPSPSNLWRFS 1004
Query: 2879 TWEXXXXXXXXXLVVDEIYKMPRGYLDLAILMDPHLEMVIVLGDPLQGEYHSTHPQSSNH 2700
TWE L++DE+YK+PRGYLDL+IL DP+L++V +LGDPLQGEYHST+P SSN
Sbjct: 1005 TWESSLFKHSSVLIIDEVYKLPRGYLDLSILADPNLKLVFILGDPLQGEYHSTNPHSSNI 1064
Query: 2699 KLSSEINHLRPYLDFYCAWTRRCPKLIADFFGVPTTSQEPGFCRPVNHLPMNCPILTNSH 2520
+L SEI+ R Y+D YC WT R PKL+A+ F +PT S E G V+ P L NS
Sbjct: 1065 RLPSEIDRFRRYIDCYCWWTYRLPKLVAELFQIPTFSSEQGSIIAVSSHPPGSKNLVNST 1124
Query: 2519 SAALTLTEAHSRACTISASQGSTYSSPVVIHLDRHSSQLSNSMALVALTRSTKGVLFSGD 2340
S A +L + A TIS+SQG T+ I LDRH++ LS + LVA+TRS KG F G+
Sbjct: 1125 STATSLQQMGHHAITISSSQGITFPEINTILLDRHTNLLSPNNCLVAMTRSRKGFAFVGN 1184
Query: 2339 QSILQPGPHSAKLFSQLTQFQSSHSPDDRYPI-QTHFIEQLRGVTLISTPLKSRKLVGAC 2163
+ ++ +FSQ R PI + + L+ P+ +R L
Sbjct: 1185 LHLASNSFGTSYMFSQALA---------RQPINMANCFHSFHQLLLLHHPITTRNL---- 1231
Query: 2162 PSEVKHSSTVRDFTHHAIRGSTVRDPSYQPSLAHVVRHTSPAIYHSELNRLHPDFKGDAV 1983
H ST+ + + ST S P + I H+E D +
Sbjct: 1232 RFVAGHQSTLPNVHKAHQKLSTSGKLSLPPHI---------PIDHAE----------DFI 1272
Query: 1982 RSAVIVCGDGIDHLPRVSPHFIAETRLPYHSDMPSAMPSQCSLSPP--TFSAPVFEPVYP 1809
+ +V GD ID PR+ + + TRLP H+++ PS S P F+ P F
Sbjct: 1273 ITNPVVFGDAID--PRLPTNHLPPTRLPLHTELLGTNPSSTDSSSPDLLFNTP-FSLGLS 1329
Query: 1808 GEDFETLASTFLPAHDPHLREIIFKGERSAQFPYLNQPFDLFLQPQTLIAAQHHGQKDST 1629
GE FE LA+ FLPAHDP L+EI++ + S QFP+L++PF L QP +LIAA H +DST
Sbjct: 1330 GETFENLAAHFLPAHDPSLKEILYHDQSSLQFPWLDRPFSLSCQPSSLIAATHSPSQDST 1389
Query: 1628 LLPASIPKRLRFRRNSTPYVISPKDQLLGELLFISLCKAYNRHPSSVEPFDEALFADCIN 1449
LLPASI KRLRFR + PY I+ DQLLG+ LF SLCKAY R P S PF+ LFA+CI+
Sbjct: 1390 LLPASIKKRLRFRESDQPYQITANDQLLGQHLFSSLCKAYGRSPLSSVPFNPVLFAECIS 1449
Query: 1448 LNEFAQLSSKTQTTIMANASRSDPDWRWSAVRIFSKSQHKTNEASIFGSWKACQTLALMH 1269
LNE+AQLSSKT+ TI+ANA RSDPDWR + V+IF+K+QHK N+ SIFGSWKACQTLALMH
Sbjct: 1450 LNEYAQLSSKTRATIVANAQRSDPDWRHTTVKIFAKAQHKVNDGSIFGSWKACQTLALMH 1509
Query: 1268 DAVVLLLGPVKKYQRLFDNRDRPANIYVHASHTPFQMSDWCRENLSSCEHVANDYTAFDQ 1089
D ++L+LGPVKKYQR+ D++DRP +Y+H HTP Q+S WC+ +LS ++ANDYT+FDQ
Sbjct: 1510 DYIILILGPVKKYQRVIDSKDRPPQLYIHCGHTPHQLSSWCQTHLSGQTYLANDYTSFDQ 1569
Query: 1088 SQHGEAVVLEIKKMRRLSIPEPLIQLHAYLKTNVTTQFGPLTCMRLTGEPGTYDDNTDYN 909
SQHGEAVVLE+ KM+RL+ P + LH +LKTNV TQFGPLTCMRLTGEPGTYDDN+DYN
Sbjct: 1570 SQHGEAVVLELLKMQRLNFPSFFLDLHLHLKTNVQTQFGPLTCMRLTGEPGTYDDNSDYN 1629
Query: 908 LAVIHSQYLMASIPHMVSGDDSLIDRQPLPNPLWITIGPMLHLRFKLEVTRYPLFCGYLV 729
LAVI S+YL+ S P M+SGDDS+I P +P W +I P+LHL+FK E +PLFCGY V
Sbjct: 1630 LAVIFSKYLIHSHPIMISGDDSVICGNPSIHPSWSSIEPILHLKFKTETNSHPLFCGYYV 1689
Query: 728 GPSGAVRSPITLFAKSLMALDDGSLDDKLASYLTEFSVGHSLGQEMWNLIPVEQVHYQAA 549
P GAVR+P LFAK ++ +DD +LDDK+ SYL+EFSVGH+LG + ++IP + YQ+A
Sbjct: 1690 SPLGAVRNPFALFAKLMICIDDCTLDDKILSYLSEFSVGHTLGDSLIHVIPSAILPYQSA 1749
Query: 548 LFDFFCRKASREQKLVLKIGEVPDTIISTILSSARAIARPLYAYLSSSARKLLL-KGSKT 372
DFFCR + QKL+L + +P++ I ++ + ++ ++ L S AR LL+ KGS
Sbjct: 1750 CHDFFCRNCTPSQKLLLSLDPLPESTILRLILKIKWASKAFFSLLPSKARDLLVSKGSLQ 1809
Query: 371 YRPFD 357
PFD
Sbjct: 1810 SMPFD 1814
Score = 332 bits (852), Expect = 1e-87
Identities = 177/407 (43%), Positives = 232/407 (57%), Gaps = 52/407 (12%)
Frame = -1
Query: 5948 ESLSNTIHRDTVTSPLVEAVADPLRDSLEKYPYAVSPSLTSFLSKRGINISGYGAKTHPH 5769
E+L++T+HRD T+P++ +V +PL+ SL +YP+ + + FL GI SG G HPH
Sbjct: 8 EALNSTVHRDAATNPILNSVVEPLQQSLVQYPWLLPKEVLPFLLSSGIPNSGLGTTPHPH 67
Query: 5768 PAHKNIENYILQDVWPNLIRNQSSVLFMKPSKFRKLEQKDSNFHELINYRLTPQDTTRYP 5589
P HK IE ++L + W L S+++FMKP KF+KL ++NF L NYRLTP DTTRYP
Sbjct: 68 PTHKVIETFLLYNHWSCLANQPSTIMFMKPQKFQKLRNLNNNFTHLCNYRLTPADTTRYP 127
Query: 5588 SSSTTLPAHSTVFMHDALMYYTPGDIADLFLSAPHLTQLYATLVVPPESSFTDTSFFPEL 5409
++S LP VFMHDALMY+ P I DLFL++P + LY +L+VPPES FTD S P L
Sbjct: 128 TTSLHLPNTPVVFMHDALMYFNPAQILDLFLNSPIINSLYCSLIVPPESDFTDLSLQPIL 187
Query: 5408 YNFHFHDTDLVYELEGNPSHHYIQPKSALDWLRTSTIRCSDLTLSISILESIGPVHHLLI 5229
Y F L Y EG+ + Y QP ALDWL+ +I +L LS++ L+S GPVH +LI
Sbjct: 188 YQFSISGQTLHYVPEGHNAGSYNQPLHALDWLKIHSILSRELNLSVTKLDSWGPVHSILI 247
Query: 5228 QRGLAPKH-----------------------------------------------RENTT 5190
QR L P H +
Sbjct: 248 QRNLPPLHPARQSPINHSLSSLFPQHNRAPRALRSQRDSSQHLQSALQALFPPPQAAHAL 307
Query: 5189 RDFDTPDCFLLPAPTSLSQNVRDRLVPLAAYHSLRAYVMAVRTLRTTDPAGFVRTQSTKP 5010
F P+C LP+ T L+Q +R RLVPL Y++L Y AVRTLRT+DPAGFVRTQS K
Sbjct: 308 ASFKIPECLELPSATFLNQPLRHRLVPLQVYNALFTYTRAVRTLRTSDPAGFVRTQSNKA 367
Query: 5009 EFAWVTAEAWDSLQNFALLTCNQRPAVSYLTFASSFARIK-----HW 4884
E++WVT AWD+LQ FAL+ RP V Y F + F ++K HW
Sbjct: 368 EYSWVTPNAWDNLQTFALMNAPIRPRVFYEFFLNPFQKLKLHFRQHW 414
>ref|NP_041257.1| replicase [Ononis yellow mosaic virus]
gi|130553|sp|P20127.1|POLR_OYMV RecName: Full=RNA
replicase polyprotein gi|332574|gb|AAA46796.1| replicase
protein (RP) [Ononis yellow mosaic virus]
Length = 1776
Score = 971 bits (2510), Expect = 0.0
Identities = 539/1164 (46%), Positives = 691/1164 (59%), Gaps = 16/1164 (1%)
Frame = -1
Query: 3818 GSLDTVNVAIP----DDTTPE----RSTLILDPSGFGEVSTFAQLYPDDYVLGCAEFFCR 3663
G+L+ + + +P + T P+ S L+ D S G V F ++P +Y + F R
Sbjct: 636 GALNQLPLPVPSPLQNSTNPKPPFPSSDLLSDMSCTGPVVEFETIFPAEYHMSNGSFPTR 695
Query: 3662 KRHHGVSTAPFPTMPCLLDAVGSCLGVTPAELWSTLCHHLPDSLLQNPQITSCGLSTDHL 3483
R H S+APFP CLL AV S L T +LW LC LPDSLL N ++ + GLSTDHL
Sbjct: 696 LRGHPRSSAPFPQKHCLLTAVASQLSYTEHQLWEFLCDMLPDSLLTNSEVENFGLSTDHL 755
Query: 3482 TALSHFYQFKAFVTSDQEPIPHPYGVDSAPTTIRFSHTTGNPGHF-----FITSDPGAPP 3318
T LS+ F+ + + IP YG+ A T I+ S+ G P HF + PG+ P
Sbjct: 756 TCLSYRLHFECIIHTSHSTIP--YGIKKASTVIQISYIDGPPKHFKAFIKLAAAAPGSNP 813
Query: 3317 PPKXXXXXXXXXXXXXXLTTFRLNGELLPFQTVHNYRANVKRAKNLISNMKNGFDGVMAT 3138
F+ N LPF H + +V AKNLISNMKNGFDG+ +
Sbjct: 814 SKSNLVRAALR---------FKYNDAFLPFWDAHQHTISVPHAKNLISNMKNGFDGITSQ 864
Query: 3137 VDPQHPNSAKEKFVTTDGILDIAKSRSIKLIHIAGFPGCGKSYPIQRLLLTAPRARNFRI 2958
+ S K K + D +D++ R +IHIAGFPGCGKS+PIQ+LL T P R+FR+
Sbjct: 865 LSGPSNKSPKMKLLELDATIDVSFPRKCDVIHIAGFPGCGKSHPIQKLLQT-PAFRHFRL 923
Query: 2957 SVPTAELRHEWKASMDLEPKNNWRIGTWEXXXXXXXXXLVVDEIYKMPRGYLDLAILMDP 2778
SVPT ELR EWK ++L WR+ TWE LVVDEIYK+PRGYLDL +L DP
Sbjct: 924 SVPTNELRSEWKRDLNLPESEVWRLCTWETALFKSSNILVVDEIYKLPRGYLDLILLADP 983
Query: 2777 HLEMVIVLGDPLQGEYHSTHPQSSNHKLSSEINHLRPYLDFYCAWTRRCPKLIADFFGVP 2598
+++VI+LGDPLQGEYHS+HP SSN +L SE L Y+D YC WT RCPK +AD FGV
Sbjct: 984 SIQLVIMLGDPLQGEYHSSHPSSSNSRLESETTRLSKYIDCYCWWTYRCPKAVADLFGVK 1043
Query: 2597 TTSQEPGFCRPVNHLPMNCPILTNSHSAALTLTEAHSRACTISASQGSTYSSPVVIHLDR 2418
T + GF R V P N P L NS + A T+ A TIS+SQG TYS PV + LDR
Sbjct: 1044 TFNSNEGFIRAVLSHPPNLPNLVNSIATANTMQSLGHHALTISSSQGMTYSDPVTVLLDR 1103
Query: 2417 HSSQLSNSMALVALTRSTKGVLFSGDQSILQPGPHSAKLFS-QLTQFQSSHSPDDRYPIQ 2241
HS ++ ALVALTRS G+ F G ++ +FS LT +P+
Sbjct: 1104 HSLLITPQTALVALTRSRSGIYFIGSMYTASGSAGTSYMFSCALTGLPVDMM--SAFPL- 1160
Query: 2240 THFIEQLRGVTLISTPLKSRKLVGACPSEVKHSSTVRDFTHHAIRGSTVRDPSYQPSLAH 2061
+ LI P++SR+ H + G T PSL
Sbjct: 1161 ------FHTLPLIHEPIRSRR-------------------HRLVAGHT-------PSL-- 1186
Query: 2060 VVRHTSPAIYHSELNRLHPDFKGDAVRSAVIVCGDGIDHLP--RVSPHFIAETRLPYHSD 1887
H P+ L P + ++ G + P R++ + TRLP H D
Sbjct: 1187 ---HVPPSNKWPHRLHLPPHIPTSHSKDVILAHGIVASNAPERRLTTLHLPPTRLPLHFD 1243
Query: 1886 MPSAMPSQCSLSPPTFSAPVFEPVYPGEDFETLASTFLPAHDPHLREIIFKGERSAQFPY 1707
+ S PS S S + S F + GE FE LA+ FLPAHDP L+E+ + S QFPY
Sbjct: 1244 LESCNPSTVSTSSTSNSEVPFTHAFLGESFEELAAHFLPAHDPDLKEVTVGDQTSQQFPY 1303
Query: 1706 LNQPFDLFLQPQTLIAAQHHGQKDSTLLPASIPKRLRFRRNSTPYVISPKDQLLGELLFI 1527
L+QP+ L QP +L+AA H D TLL SI KRLRFR +S+PY +P D +LG LL+
Sbjct: 1304 LDQPYTLSCQPSSLLAASHKPASDPTLLIFSISKRLRFRASSSPYAFTPNDLILGHLLYT 1363
Query: 1526 SLCKAYNRHPSSVEPFDEALFADCINLNEFAQLSSKTQTTIMANASRSDPDWRWSAVRIF 1347
+ CKA+ R P+S PF+ ALFA+CI LNE+AQLSSKTQ TI++NASRSDPDWR++ VRIF
Sbjct: 1364 NWCKAFGRCPNSTIPFNPALFAECICLNEYAQLSSKTQATIVSNASRSDPDWRYTVVRIF 1423
Query: 1346 SKSQHKTNEASIFGSWKACQTLALMHDAVVLLLGPVKKYQRLFDNRDRPANIYVHASHTP 1167
+KSQHK N+ SIFGSWKACQTLALMHD V+L LGPVKKYQR+ D+ DRP IY H TP
Sbjct: 1424 AKSQHKVNDGSIFGSWKACQTLALMHDFVILTLGPVKKYQRIIDHYDRPNFIYTHCGKTP 1483
Query: 1166 FQMSDWCRENLSSCEHVANDYTAFDQSQHGEAVVLEIKKMRRLSIPEPLIQLHAYLKTNV 987
++S W L ++ NDYT+FDQSQHGEAV+ E KM R+ IP LI LH YLKTNV
Sbjct: 1484 SELSAWSHSFLKGDAYICNDYTSFDQSQHGEAVIFESLKMHRVGIPRHLIDLHIYLKTNV 1543
Query: 986 TTQFGPLTCMRLTGEPGTYDDNTDYNLAVIHSQYLMASIPHMVSGDDSLIDRQPLPNPLW 807
+TQFGPLTCMRLTGEPGTYDDNTDYNLAVI SQY+++ P MVSGDDS+I P NP W
Sbjct: 1544 STQFGPLTCMRLTGEPGTYDDNTDYNLAVIFSQYVISDHPIMVSGDDSVICGHPPINPNW 1603
Query: 806 ITIGPMLHLRFKLEVTRYPLFCGYLVGPSGAVRSPITLFAKSLMALDDGSLDDKLASYLT 627
+ +LHLRFK E T PLFCGY VGP+G R+P LFAK +++ D G+L + L SYL
Sbjct: 1604 PAVEKLLHLRFKTEETSLPLFCGYYVGPTGCCRNPFALFAKLMISYDKGNLFETLPSYLY 1663
Query: 626 EFSVGHSLGQEMWNLIPVEQVHYQAALFDFFCRKASREQKLVLKIGEVPDTIISTILSSA 447
EFS+GH LG + L P + Y +A +D FCRK + QKL+L +P + S + S++
Sbjct: 1664 EFSIGHRLGDVVRLLFPDHLLKYYSACWDLFCRKCTASQKLILSFEPIPPSFFSKLASTS 1723
Query: 446 RAIARPLYAYLSSSARKLLLKGSK 375
R +++ L++ L + R +L+ SK
Sbjct: 1724 RWVSKVLFSDLPTKIRDMLISSSK 1747
Score = 327 bits (837), Expect = 6e-86
Identities = 166/353 (47%), Positives = 221/353 (62%), Gaps = 1/353 (0%)
Frame = -1
Query: 5945 SLSNTIHRDTVTSPLVEAVADPLRDSLEKYPYAVSPSLTSFLSKRGINISGYGAKTHPHP 5766
+L+++ H+D+ +P++ + PL+ SL+ +P+ + FL GI SG+G HPH
Sbjct: 9 ALASSTHKDSSLNPVLNSAVQPLQTSLQNFPWIIGKEHLPFLLAAGIPTSGFGCNPHPHA 68
Query: 5765 AHKNIENYILQDVWPNLIRNQSSVLFMKPSKFRKLEQKDSNFHELINYRLTPQDTTRYPS 5586
HK IE ++L + W + Q+SV+FMKPSKF+KL + NF EL+NYRLT D+ RYPS
Sbjct: 69 VHKVIETFLLFNHWSFMATVQASVMFMKPSKFKKLASVNPNFSELVNYRLTAADSVRYPS 128
Query: 5585 SSTTLPAHSTVFMHDALMYYTPGDIADLFLSAPHLTQLYATLVVPPESSFTDTSFFPELY 5406
+ST+LP + VFMHDALMY+ P I DLF+ P L +L+ +LVVPPESSFTD S P LY
Sbjct: 129 TSTSLPKYEIVFMHDALMYFNPSQILDLFIQCPSLQRLHCSLVVPPESSFTDLSLHPNLY 188
Query: 5405 NFHFHDTDLVYELEGNPSHHYIQPKSALDWLRTSTIRCSDLTLSISILESIGPVHHLLIQ 5226
+ L Y EG+ + Y QP A+ WL+ ++I L LS+S LES GPVH LLI
Sbjct: 189 TYTISGNTLHYVPEGHHAGSYDQPLDAISWLKLNSIHSPHLNLSVSKLESWGPVHSLLIT 248
Query: 5225 RGLAP-KHRENTTRDFDTPDCFLLPAPTSLSQNVRDRLVPLAAYHSLRAYVMAVRTLRTT 5049
RGL E F P+C LP T L Q +R RLVP Y +L Y AVRTLRT+
Sbjct: 249 RGLPHLPSSEKQQVSFHIPNCLPLPEATFLHQPLRHRLVPTEVYDALFTYTRAVRTLRTS 308
Query: 5048 DPAGFVRTQSTKPEFAWVTAEAWDSLQNFALLTCNQRPAVSYLTFASSFARIK 4890
DPAGFVRT S KP+++WVT+ AWD+LQ +ALL RP V + F S + +
Sbjct: 309 DPAGFVRTHSNKPQYSWVTSRAWDNLQTYALLNAPVRPVVLFDFFLSPLKKFQ 361