BLASTX nr result
ID: Akebia23_contig00003030
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Akebia23_contig00003030 (5954 letters) Database: ./nr 38,876,450 sequences; 13,856,398,315 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_224218.1| replicase-associated polyprotein [Citrus sudden... 1118 0.0 gb|ABA54133.1| polyprotein [Citrus sudden death-associated virus] 1112 0.0 gb|ADD13602.1| replicase-associated polyprotein [Oat blue dwarf ... 1084 0.0 ref|YP_003475889.1| replicase-associated polyprotein [Olive late... 1083 0.0 ref|NP_044447.1| replicase-associated polyprotein [Oat blue dwar... 1077 0.0 gb|ACV53023.1| polyprotein [Blackberry virus S] 1076 0.0 ref|NP_115454.1| polyprotein [Maize rayado fino virus] gi|819647... 1075 0.0 ref|YP_004464920.1| polyprotein [Switchgrass mosaic virus] gi|33... 1069 0.0 gb|ACV83739.1| replicase-associated polyprotein [Grapevine virus Q] 1055 0.0 ref|YP_002756536.1| putative 230 kDa polyprotein [Grapevine Syra... 1053 0.0 gb|AFV34757.1| polyprotein [Grapevine Syrah virus 1] 1051 0.0 ref|YP_004300278.1| replication-associated polyprotein [Fig flec... 1012 0.0 ref|NP_044328.1| replicase [Kennedya yellow mosaic virus] gi|548... 997 0.0 sp|P10358.2|POLR_TYMV RecName: Full=RNA replicase polyprotein; A... 991 0.0 gb|AAB92649.1| replicase protein [Turnip yellow mosaic virus] 991 0.0 ref|NP_663297.1| replicase/papain-like protease [Turnip yellow m... 988 0.0 ref|YP_002048673.1| replicase-associated protein RP [Diascia yel... 988 0.0 sp|P20128.1|POLR_TYMVA RecName: Full=RNA replicase polyprotein g... 986 0.0 ref|YP_007517180.1| viral replication protein [Andean potato lat... 982 0.0 ref|NP_041257.1| replicase [Ononis yellow mosaic virus] gi|13055... 971 0.0 >ref|YP_224218.1| replicase-associated polyprotein [Citrus sudden death-associated virus] gi|59609791|gb|AAW88343.1| replicase-associated polyprotein [Citrus sudden death-associated virus] Length = 2188 Score = 1118 bits (2893), Expect = 0.0 Identities = 601/1156 (51%), Positives = 756/1156 (65%), Gaps = 7/1156 (0%) Frame = -1 Query: 3764 STLILDPSGFGEVSTFAQLYPDDYVLGCAEFFCRKRHHGVSTAPFPTMPCLLDAVGSCLG 3585 S L D S G ++ L+P Y+ G +F R R +G + P+P M CLL ++ Sbjct: 854 SPLARDSSASGPPGMYSDLFPAPYLPGTGQFIFRSRANGRANIPYPDMDCLLLSIEQATR 913 Query: 3584 VTPAELWSTLCHHLPDSLLQNPQITSCGLSTDHLTALSHFYQFKAFVTSDQEPIPHPYGV 3405 + LW TLC PDSLL I GLSTDH L+H Y + + I G+ Sbjct: 914 LPKEALWDTLCATCPDSLLDPDTIRRVGLSTDHFAILAHHYSLRCRFHTAHGVIE--LGM 971 Query: 3404 DSAPTTIRFSHTTGNPGHFFITSDPGAPPPPKXXXXXXXXXXXXXXLTTFRLNGELLPFQ 3225 A ++ HT GNPGHF + A P F ++G LLP + Sbjct: 972 ADATSSFDIDHTAGNPGHFSLRQS--ATP----RLNGGIAQDLAVAALRFNIDGTLLPIR 1025 Query: 3224 TVHNYRANVKRAKNLISNMKNGFDGVMATVDPQHPNSAKEKFVTTDGILDIAKSRSIKLI 3045 +VH Y KRAKNL SNMKNGFDG+MA + P N ++EK + D LDIA RS++LI Sbjct: 1026 SVHVYSTWPKRAKNLSSNMKNGFDGIMANIHPTKTNESREKILALDSQLDIAVRRSVRLI 1085 Query: 3044 HIAGFPGCGKSYPIQRLLLTAPRARNFRISVPTAELRHEWKASMDLEPKNNWRIGTWEXX 2865 HIAGFPGCGKS+PI RLL T P RNF+++VPT ELR EWK L WRIGTWE Sbjct: 1086 HIAGFPGCGKSFPISRLLRT-PTFRNFKVAVPTVELRAEWKTITGLPASEAWRIGTWESS 1144 Query: 2864 XXXXXXXLVVDEIYKMPRGYLDLAILMDPHLEMVIVLGDPLQGEYHSTHPQSSNHKLSSE 2685 LV+DEIYKMPRGY+DLAI DP +EMVI LGDPLQGEYHSTHP S+N +L SE Sbjct: 1145 LLKSARVLVIDEIYKMPRGYIDLAIHSDPTIEMVIALGDPLQGEYHSTHPSSTNSRLLSE 1204 Query: 2684 INHLRPYLDFYCAWTRRCPKLIADFFGVPTTSQEPGFCRPVNHLPMNCPILTNSHSAALT 2505 HL YLDFYC W+ R P+ +A FF V TTS++PGFCR LP N IL NS +A T Sbjct: 1205 PQHLSMYLDFYCLWSHRVPQNVAAFFHVKTTSKQPGFCRYQRELP-NSRILANSQNAGHT 1263 Query: 2504 LTEAHSRACTISASQGSTYSSPVVIHLDRHSSQLSNSMALVALTRSTKGVLFSGDQSILQ 2325 L + A TI++SQGSTY + IHLDR+SS LS + ++VALTRS GV+F+GD + L Sbjct: 1264 LQQCGYAAVTIASSQGSTYENAACIHLDRNSSLLSPAHSMVALTRSKVGVIFTGDPAQLS 1323 Query: 2324 PGPHSAKLFSQLTQFQSSHSPDDRYPIQTHFIEQLRGVTLISTPLKSR--KLVGACPSEV 2151 P S ++FS+ ++ P+ F + T+++ PLK+R +L GA Sbjct: 1324 NAPSSNRMFSEFFSGRTR-------PLHDWFHNEFPKATVLTEPLKTRGPRLTGAASP-- 1374 Query: 2150 KHSSTVRDFTHHAIRGSTVRDPSYQPSLAHVVRHTSPAIYHSELNRLHPDFKGDAVRSAV 1971 +S V P Q S +PA L PDF+GD + SA Sbjct: 1375 -YSKAV---------------PIRQAS--------TPA--------LKPDFQGDVIISAP 1402 Query: 1970 IVCGDGIDHLPRVSPHFIAETRLPYHSDMPSAMPSQCSL---SPPTFSAPVFEPVYPGED 1800 IV G G + P+VS HF+ ETR P H D+PSA+P + + PT S P EPVYPGE Sbjct: 1403 IVLGSGELNAPQVSSHFLPETRRPLHWDIPSAIPESATRPDSTEPTTSHP--EPVYPGET 1460 Query: 1799 FETLASTFLPAHDPHLREIIFKGERSAQFPYLNQPFDLFLQPQTLIAAQHHGQKDSTLLP 1620 FE LA+ FLPAHDP REI ++G+ S QFP++++ F L QP +L+AA H ++D TLLP Sbjct: 1461 FENLAAHFLPAHDPTDREIYWQGQLSNQFPHMDKEFHLAAQPMSLLAAVHQEKQDPTLLP 1520 Query: 1619 ASIPKRLRFRRNSTPYVISPKDQLLGELLFISLCKAYNRHPSSVEPFDEALFADCINLNE 1440 ASI KRLRFR + PY I+PKD++LG+LLF LC+AY+R P E FD LFA+CINLNE Sbjct: 1521 ASIQKRLRFRPSDKPYQITPKDEILGQLLFEGLCRAYHRSPFHTEAFDPVLFAECINLNE 1580 Query: 1439 FAQLSSKTQTTIMANASRSDPDWRWSAVRIFSKSQHKTNEASIFGSWKACQTLALMHDAV 1260 FAQLSSKTQ TIM NA RSDPDWRWSAVRIFSK+QHK NE SIF SWKACQTLALMHDAV Sbjct: 1581 FAQLSSKTQATIMGNARRSDPDWRWSAVRIFSKTQHKVNEGSIFRSWKACQTLALMHDAV 1640 Query: 1259 VLLLGPVKKYQRLFDNRDRPANIYVHASHTPFQMSDWCRENLSSCEHVANDYTAFDQSQH 1080 VL+LGPVKKYQR+FD RDRP ++Y+HA +TP QMS+WC+++L++ +ANDYTAFDQSQH Sbjct: 1641 VLILGPVKKYQRVFDQRDRPRHLYIHAGNTPSQMSNWCQQHLTTAVKLANDYTAFDQSQH 1700 Query: 1079 GEAVVLEIKKMRRLSIPEPLIQLHAYLKTNVTTQFGPLTCMRLTGEPGTYDDNTDYNLAV 900 GEAVVLE KKM RLSIP+ LI LH +LKT+V+TQFGPLTCMRLTGEPGTYDDN+DYNLAV Sbjct: 1701 GEAVVLERKKMERLSIPQALIDLHIHLKTHVSTQFGPLTCMRLTGEPGTYDDNSDYNLAV 1760 Query: 899 IHSQYLMASIPHMVSGDDSLIDRQPLPNPLWITIGPMLHLRFKLEVTRYPLFCGYLVGPS 720 ++ +Y+ A+ P MVSGDDSL+DR+P P W+ + P+L LRFK E RY FCGY Sbjct: 1761 VNCEYMAANTPTMVSGDDSLLDREPPTRPEWVILQPLLSLRFKKERGRYATFCGYYASHV 1820 Query: 719 GAVRSPITLFAKSLMALDDGSLDDKLASYLTEFSVGHSLGQEMWNLIPVEQVHYQAALFD 540 G VRSP+ LFAK +A+DDGS+ DK+ASYL+EF++GHSLG +W +P+E V +Q+A FD Sbjct: 1821 GCVRSPVALFAKLAIAVDDGSISDKMASYLSEFALGHSLGDHLWEALPLEAVPFQSACFD 1880 Query: 539 FFCRKASREQKLVLKIGEVPDTIISTILSSARAIARPLYAYLSSSARKLLLKGSKTYR-- 366 FFCR+A R KL L +GEVP++II+ I SS + + +Y LSS+AR +L+ S+ R Sbjct: 1881 FFCRRAPRHLKLSLMLGEVPESIIARIGSSLKWASHAIYTTLSSAARVAILRSSRNSRSM 1940 Query: 365 PFDTEESLQFEGVLQH 318 P D + +L +LQH Sbjct: 1941 PDDPDTTLLQGELLQH 1956 Score = 459 bits (1180), Expect = e-126 Identities = 252/553 (45%), Positives = 319/553 (57%), Gaps = 4/553 (0%) Frame = -1 Query: 5945 SLSNTIHRDTVTSPLVEAVADPLRDSLEKYPYAVSPSLTSFLSKRGINISGYGAKTHPHP 5766 SL+ T HRDT+ +PL+EA+A+P R SL YP+ + +L FL+ GI +G G K HPHP Sbjct: 97 SLAPTTHRDTIATPLMEALAEPYRQSLSTYPWHIPTNLQPFLTSCGITTAGQGFKAHPHP 156 Query: 5765 AHKNIENYILQDVWPNLIRNQSSVLFMKPSKFRKLEQKDSNFHELINYRLTPQDTTRYPS 5586 HK IE +L +VWP+ S V+FMKPSKF KL+ K NF +L NYR+T +DTTRYPS Sbjct: 157 VHKTIETNLLTNVWPHYATTPSGVMFMKPSKFEKLKIKQPNFSKLYNYRITAKDTTRYPS 216 Query: 5585 SSTTLPAHSTVFMHDALMYYTPGDIADLFLSAPHLTQLYATLVVPPESSFTDTSFFPELY 5406 +S LP T FMHDALMYY+PG I DLFLS P L +LYA+LVVPPES FT S FP+LY Sbjct: 217 TSPDLPTEDTCFMHDALMYYSPGQICDLFLSRPSLQKLYASLVVPPESDFTTISLFPDLY 276 Query: 5405 NFHFHDTDLVYELEGNPSHHYIQPKSALDWLRTSTIRCSDLTLSISILESIGPVHHLLIQ 5226 + L+YELE NP+H+YIQP+SA+DWL+T+TIRC DLTL+IS L+S GPVH LLIQ Sbjct: 277 RYRIEKDQLIYELEQNPAHNYIQPRSAIDWLKTTTIRCQDLTLTISRLDSWGPVHSLLIQ 336 Query: 5225 RGLAPKHRENTTRDFDTPDCFLLPAPTSLSQNVRDRLVPLAAYHSLRAYVMAVRTLRTTD 5046 RG P H E + F P LLP P SLSQ+VRDRLVP Y +L YV AVRTLR TD Sbjct: 337 RGKPPIHLEEDSISFRAPKAVLLPEPASLSQSVRDRLVPADVYQALFIYVRAVRTLRVTD 396 Query: 5045 PAGFVRTQSTKPEFAWVTAEAWDSLQNFALLTCNQRPAVSYLTFASSFARIKHWXXXXXX 4866 PAGFVRTQ +KPE++WVT+ AWD+L +FAL T RP +Y F S+ AR+ HW Sbjct: 397 PAGFVRTQISKPEYSWVTSSAWDNLAHFALATAPHRPHTTYFLFNSTAARVAHW------ 450 Query: 4865 XXXXXXXXXXXAVSFTTVKVAHYCSTRQIDSLILFGKQIVRPSCPLNSPFSLHQYFSRTA 4686 +S T A T + +V S R Sbjct: 451 ----FRTHTLAPLSGATAAAASLLMTASWGFRAMISSHLVSLS-----------ICKRWL 495 Query: 4685 QLPPSL--STQLPRFELVTSPRIITKW--SPCLARFLLSTPFFRTLTTQLNFLSKKCFFA 4518 + PP L + P F+L P++ P L F L L + L+ A Sbjct: 496 KAPPHLLWPEKAPWFQLTLRPKVTGPLIDLPILRPFRLFPSTCAKLGAKHPALATLLPAA 555 Query: 4517 KGFPHSRKLXXXXXXXXXILWAYRRFMGPDAPQAMFDQYNGYFNPKPWKLRIAQGPTKCS 4338 K+ L+ +R+F+GPD+PQ M D Y+ F+P+PW L + + C Sbjct: 556 PRPTWPLKVGLALAAVPVCLFLWRKFIGPDSPQDMHDSYHAMFHPQPWGLTLTRKAICCD 615 Query: 4337 RGQFLPFCPRPHS 4299 R FLP P S Sbjct: 616 RAPFLPIPVVPSS 628 >gb|ABA54133.1| polyprotein [Citrus sudden death-associated virus] Length = 2189 Score = 1112 bits (2877), Expect = 0.0 Identities = 598/1158 (51%), Positives = 757/1158 (65%), Gaps = 9/1158 (0%) Frame = -1 Query: 3764 STLILDPSGFGEVSTFAQLYPDDYVLGCAEFFCRKRHHGVSTAPFPTMPCLLDAVGSCLG 3585 S + D S G ++ L+P Y+ G +F R R +G + P+P M CLL ++ Sbjct: 854 SPVARDSSATGPPGMYSDLFPAPYLPGTGQFIFRSRANGRANIPYPDMDCLLLSIEQATR 913 Query: 3584 VTPAELWSTLCHHLPDSLLQNPQITSCGLSTDHLTALSHFYQFKAFVTSDQEPIPHPYGV 3405 + LW TLC PDSLL I GLSTDH +H Y + + I G+ Sbjct: 914 LPKEALWDTLCATCPDSLLDPDTIRRVGLSTDHFVIFAHHYSLRCRFHTAHGVIE--LGM 971 Query: 3404 DSAPTTIRFSHTTGNPGHFFITSDPGAPPPPKXXXXXXXXXXXXXXLTTFRLNGELLPFQ 3225 A ++ HT GNPGHF + A P F ++G LLP + Sbjct: 972 ADATSSFDIDHTAGNPGHFSLRQS--ATP----RLNGGIAQDLAVAALRFNIDGTLLPIR 1025 Query: 3224 TVHNYRANVKRAKNLISNMKNGFDGVMATVDPQHPNSAKEKFVTTDGILDIAKSRSIKLI 3045 +VH Y KRAKNL SNMKNGFDG+MA + P N ++EK + D LDIA RS++LI Sbjct: 1026 SVHVYSTWPKRAKNLSSNMKNGFDGIMANIHPTKTNESREKILALDSQLDIAVRRSVRLI 1085 Query: 3044 HIAGFPGCGKSYPIQRLLLTAPRARNFRISVPTAELRHEWKASMDLEPKNNWRIGTWEXX 2865 HIAGFPGCGKS+PI RLL T P RNF+++VPT ELR EWKA + L WRIGTWE Sbjct: 1086 HIAGFPGCGKSFPISRLLRT-PTFRNFKVAVPTVELRAEWKAIIGLPTSEAWRIGTWESS 1144 Query: 2864 XXXXXXXLVVDEIYKMPRGYLDLAILMDPHLEMVIVLGDPLQGEYHSTHPQSSNHKLSSE 2685 LV+DEIYKMPRGY+DLAI DP +EMVI LGDPLQGEYHSTHP S+N +L +E Sbjct: 1145 LLKSARVLVIDEIYKMPRGYIDLAIHSDPTIEMVIALGDPLQGEYHSTHPSSTNSRLLAE 1204 Query: 2684 INHLRPYLDFYCAWTRRCPKLIADFFGVPTTSQEPGFCRPVNHLPMNCPILTNSHSAALT 2505 +HL YLD+YC W+ R P+ +A FF + TTS++PGFCR LP N IL NS +A T Sbjct: 1205 PHHLSMYLDYYCMWSHRVPQNVAAFFHIKTTSKQPGFCRYQRELP-NSRILANSQNAGHT 1263 Query: 2504 LTEAHSRACTISASQGSTYSSPVVIHLDRHSSQLSNSMALVALTRSTKGVLFSGDQSILQ 2325 L + A TI++SQGSTY + IHLDR+SS LS + ++VALTRS GV+F+GD + L Sbjct: 1264 LQQCGYAAVTIASSQGSTYDNAACIHLDRNSSLLSPAHSMVALTRSKVGVIFTGDPAQLS 1323 Query: 2324 PGPHSAKLFSQLTQFQSSHSPDDRYPIQTHFIEQLRGVTLISTPLKSR--KLVGACPSEV 2151 P S ++FS+ ++ P+ F + T+++ PLK+R +L GA Sbjct: 1324 NAPSSNRMFSEFFSGRTR-------PLHDWFHNEFPKATVLTEPLKTRGPRLTGAASPYS 1376 Query: 2150 KHSSTVRDFTHHAIRGSTVRDPSYQPSLAHVVRHTSPAIYHSELNRLHPDFKGDAVRS-- 1977 K + +D T PA L PDF+GD VRS Sbjct: 1377 KVFPSGKDST--------------------------PA--------LKPDFQGD-VRSSR 1401 Query: 1976 AVIVCGDGIDHLPRVSPHFIAETRLPYHSDMPSAMPSQCS---LSPPTFSAPVFEPVYPG 1806 A IV G G + P+VS HF+ ETR P H D+PSA+P + + PT P EPVYPG Sbjct: 1402 APIVLGSGELNAPQVSTHFLPETRRPLHWDIPSAIPESATRPDSTEPTTCHP--EPVYPG 1459 Query: 1805 EDFETLASTFLPAHDPHLREIIFKGERSAQFPYLNQPFDLFLQPQTLIAAQHHGQKDSTL 1626 E FE LA+ FLPAHDP REI ++G+ S QFP++++ F L QP +L+AA H ++D TL Sbjct: 1460 ETFENLAAHFLPAHDPTDREIYWQGQLSNQFPHMDKEFHLAAQPMSLLAAIHQEKQDPTL 1519 Query: 1625 LPASIPKRLRFRRNSTPYVISPKDQLLGELLFISLCKAYNRHPSSVEPFDEALFADCINL 1446 LPASI KRLRFR + PY I+PKD++LG+LLF LC+AY+R P E FD LFA+CINL Sbjct: 1520 LPASIQKRLRFRPSDRPYQITPKDEILGQLLFEGLCRAYHRSPFHTEAFDPVLFAECINL 1579 Query: 1445 NEFAQLSSKTQTTIMANASRSDPDWRWSAVRIFSKSQHKTNEASIFGSWKACQTLALMHD 1266 NEFAQLSSKTQ TIM NA RSDPDWRWSAVRIFSK+QHK NE SIFGSWKACQTLALMHD Sbjct: 1580 NEFAQLSSKTQATIMGNARRSDPDWRWSAVRIFSKTQHKVNEGSIFGSWKACQTLALMHD 1639 Query: 1265 AVVLLLGPVKKYQRLFDNRDRPANIYVHASHTPFQMSDWCRENLSSCEHVANDYTAFDQS 1086 AVVL+LGPVKKYQR+FD RDRP ++Y+HA +TP QMS+WC+++L++ +ANDYTAFDQS Sbjct: 1640 AVVLILGPVKKYQRVFDQRDRPRHLYIHAGNTPSQMSNWCQQHLTTAVKLANDYTAFDQS 1699 Query: 1085 QHGEAVVLEIKKMRRLSIPEPLIQLHAYLKTNVTTQFGPLTCMRLTGEPGTYDDNTDYNL 906 QHGEAVVLE KKM RLSIP+ LI LH +LKT+V+TQFGPLTCMRLTGEPGTYDDN+DYNL Sbjct: 1700 QHGEAVVLERKKMERLSIPQALIDLHIHLKTHVSTQFGPLTCMRLTGEPGTYDDNSDYNL 1759 Query: 905 AVIHSQYLMASIPHMVSGDDSLIDRQPLPNPLWITIGPMLHLRFKLEVTRYPLFCGYLVG 726 AVI+ +Y+ A+ P MVSGDDSL+DR+P P W+ + P+L LRFK E RY FCGY Sbjct: 1760 AVINCEYMAANTPTMVSGDDSLLDREPPTRPEWVILQPLLSLRFKKERGRYATFCGYYAS 1819 Query: 725 PSGAVRSPITLFAKSLMALDDGSLDDKLASYLTEFSVGHSLGQEMWNLIPVEQVHYQAAL 546 G VRSP+ LFAK +A+DDGS+ DK+ASYL+EF++GHSLG +W +P+E V +Q+A Sbjct: 1820 HVGCVRSPVALFAKLAIAVDDGSISDKMASYLSEFALGHSLGDHLWEALPLEAVPFQSAC 1879 Query: 545 FDFFCRKASREQKLVLKIGEVPDTIISTILSSARAIARPLYAYLSSSARKLLLKGSKTYR 366 FDFFCR+A R KL L +GEVP++II+ I SS + + +Y LSS+AR +L+ S+ R Sbjct: 1880 FDFFCRRAPRHLKLSLMLGEVPESIIARIGSSLKWASHAIYTTLSSAARVAILRSSRNSR 1939 Query: 365 --PFDTEESLQFEGVLQH 318 P D + +L +LQH Sbjct: 1940 SMPDDPDTTLLQGELLQH 1957 Score = 451 bits (1159), Expect = e-123 Identities = 262/618 (42%), Positives = 336/618 (54%), Gaps = 5/618 (0%) Frame = -1 Query: 5945 SLSNTIHRDTVTSPLVEAVADPLRDSLEKYPYAVSPSLTSFLSKRGINISGYGAKTHPHP 5766 SL+ T HRDT+ +PL+EA+A+P R SL YP+ + +L FL+ GI +G G K HPHP Sbjct: 97 SLAPTTHRDTIATPLMEALAEPYRQSLSTYPWHIPTNLQPFLTSCGITTAGQGFKAHPHP 156 Query: 5765 AHKNIENYILQDVWPNLIRNQSSVLFMKPSKFRKLEQKDSNFHELINYRLTPQDTTRYPS 5586 HK IE +L +VW + S V+FMKPSKF KL K NF +L NYR+T +D+TRYPS Sbjct: 157 VHKTIETNLLSNVWSHYATTPSGVMFMKPSKFEKLRIKQPNFSKLYNYRITAKDSTRYPS 216 Query: 5585 SSTTLPAHSTVFMHDALMYYTPGDIADLFLSAPHLTQLYATLVVPPESSFTDTSFFPELY 5406 +S LP T FMHDALMYY+PG I DLF+S P L +LYA+LVVPPES FT S FP+LY Sbjct: 217 TSPDLPTEDTCFMHDALMYYSPGQICDLFISRPSLQKLYASLVVPPESDFTTISLFPDLY 276 Query: 5405 NFHFHDTDLVYELEGNPSHHYIQPKSALDWLRTSTIRCSDLTLSISILESIGPVHHLLIQ 5226 + LVYELE NP+H+YIQP+SA+DWL+T+TIRC DLTL+IS L+S GPVH LLIQ Sbjct: 277 RYRIEKDQLVYELEQNPAHNYIQPRSAIDWLKTTTIRCQDLTLTISRLDSWGPVHSLLIQ 336 Query: 5225 RGLAPKHRENTTRDFDTPDCFLLPAPTSLSQNVRDRLVPLAAYHSLRAYVMAVRTLRTTD 5046 RG P H E + F TP LLP P SLSQ VRDRLVP Y +L YV AVRTLR TD Sbjct: 337 RGRPPIHLEEDSISFRTPKAVLLPEPASLSQGVRDRLVPADVYQALFIYVRAVRTLRVTD 396 Query: 5045 PAGFVRTQSTKPEFAWVTAEAWDSLQNFALLTCNQRPAVSYLTFASSFARIKHWXXXXXX 4866 PAGFVRTQ +KPE++WVT+ WD+ AL T RP +Y F S+ AR+ HW Sbjct: 397 PAGFVRTQISKPEYSWVTSFRWDNFPPLALATAPHRPHTTYFLFNSTAARVSHW------ 450 Query: 4865 XXXXXXXXXXXAVSFTTVKVAHYCSTRQIDSLILFGKQIVRPSCPLNSPFSLHQYFSRTA 4686 +S T A T L +V S R Sbjct: 451 ----FRTHTLALLSGATAAAASLLMTASWGFRALISSHLVSLS-----------ICKRWL 495 Query: 4685 QLPPSL--STQLPRFELVTSPRIITKW--SPCLARFLLSTPFFRTLTTQLNFLSKKCFFA 4518 + PP L + P F+L P++ P L F L L + L+ A Sbjct: 496 RAPPHLLWPEKAPWFQLTLRPKVTGPMIDLPILRPFRLFPSTCAKLGAKYPALATLLPAA 555 Query: 4517 KGFPHSRKLXXXXXXXXXILWAYRRFMGPDAPQAMFDQYNGYFNPKPWKLRIAQGPTKCS 4338 K+ L+ +R+F+GPD+PQ M D Y+ F+P+PW L +A+ C Sbjct: 556 PRPLWPLKVGLALATVPVCLFLWRKFIGPDSPQDMHDSYHAMFHPQPWGLSLARKAICCD 615 Query: 4337 RGQFLPFCPRPHSLIQXXXXXXDIFLINAVSIDLQTEVP-EHIRSLALSKPLHYEPSDDI 4161 R FLP P S + L + ++ +VP E + + S S Sbjct: 616 RAPFLPIPLVPSSDFKAPPTPATPLLTSIPIKGVEPQVPGEGVPPQSASSTGPASDSRCA 675 Query: 4160 PDPAPVLIPTKVANKITA 4107 P PA P + A ++A Sbjct: 676 PQPASSTGPDQPAQDMSA 693 >gb|ADD13602.1| replicase-associated polyprotein [Oat blue dwarf virus] Length = 2067 Score = 1084 bits (2803), Expect = 0.0 Identities = 598/1169 (51%), Positives = 747/1169 (63%), Gaps = 11/1169 (0%) Frame = -1 Query: 3764 STLILDPSGFGEVSTFAQLYPDDYVLGCAEFFCRKRHHGVSTAPFPTMPCLLDAVGSCLG 3585 S L DPS G V + L+P +Y F R R G S P+P M CLL A Sbjct: 690 SPLARDPSASGPVRFYRDLFPANYAGDSGTFDFRARASGRSPTPYPAMDCLLVATEQATR 749 Query: 3584 VTPAELWSTLCHHLPDSLLQNPQITSCGLSTDHLTALSHFYQFKAFVTSDQEPIPHPYGV 3405 ++ LW L PDS L I GLSTDH L+H + A S I G+ Sbjct: 750 ISREALWDCLTATCPDSFLDPKSIAQHGLSTDHFVILAHRFSLCANFHSAAHVIQ--LGM 807 Query: 3404 DSAPTTIRFSHTTGN---PGHFFITSDPGAPPPPKXXXXXXXXXXXXXXLTTFRLNGELL 3234 A +T +HT G+ PGHF + G P F ++G+LL Sbjct: 808 ADATSTFMINHTAGSAGLPGHFSLRL--GDQP---RALNGGLAQDLAVAALRFNISGDLL 862 Query: 3233 PFQTVHNYRANVKRAKNLISNMKNGFDGVMATVDPQHPNSAKEKFVTTDGILDIAKSRSI 3054 P ++VH YR+ KRAKNL+SNMKNGFDGVMA+++P P+ A+EK V DG+LDIA+ RS+ Sbjct: 863 PTRSVHTYRSWPKRAKNLVSNMKNGFDGVMASINPIRPSDAREKIVALDGLLDIAQPRSV 922 Query: 3053 KLIHIAGFPGCGKSYPIQRLLLTAPRARNFRISVPTAELRHEWKASMDLEPKNNWRIGTW 2874 +LIHIAGFPGCGK++PI +LL TA R+F+++VPT ELR EWK M L P WR GTW Sbjct: 923 RLIHIAGFPGCGKTHPITKLLHTAA-FRDFKLAVPTTELRSEWKELMKLSPSQAWRFGTW 981 Query: 2873 EXXXXXXXXXLVVDEIYKMPRGYLDLAILMDPHLEMVIVLGDPLQGEYHSTHPQSSNHKL 2694 E LV+DEIYK+PRGYLDLAI D +E VI LGDPLQGEYHSTHP SSN +L Sbjct: 982 ESSLLKSARILVIDEIYKLPRGYLDLAIHSDSSIEFVIALGDPLQGEYHSTHPSSSNSRL 1041 Query: 2693 SSEINHLRPYLDFYCAWTRRCPKLIADFFGVPTTSQEPGFCRPVNHLPMNCPILTNSHSA 2514 E++HL PYLD+YC W+ R P+ +A FF V + + GF R P +LTNS ++ Sbjct: 1042 IPEVSHLAPYLDYYCLWSYRVPQDVATFFQVQSHNPALGFARLSKQFPTTGRVLTNSQNS 1101 Query: 2513 ALTLTEAHSRACTISASQGSTYSSPVVIHLDRHSSQLSNSMALVALTRSTKGVLFSGDQS 2334 LT+T+ A TI++SQGSTYS IHLDR+SS LS S +LVALTRS GV FSGD + Sbjct: 1102 MLTMTQCGYSAVTIASSQGSTYSGATHIHLDRNSSLLSPSNSLVALTRSRTGVFFSGDPA 1161 Query: 2333 ILQPGPHSAKLFSQLTQFQSSHSPDDRYPIQTHFIEQLRGVTLISTPLKSR--KLVGA-C 2163 +L GP+S +FS Q +S H I+ F TL+ +PL+ R +L GA Sbjct: 1162 LLNGGPNSNLMFSAFFQGKSRH-------IRDWFPTLFPTATLLLSPLRQRHNRLTGALA 1214 Query: 2162 PSEVKHSSTVRDFTHHAIRGSTVRDPSYQP-SLAHVVRHTSPAIYHSELNRLHPDFKGDA 1986 P E H + D S + P+ P S A VR A + P + D Sbjct: 1215 PVEPSHL-LLPDLP------SLLPLPASGPYSRAFPVRSRFAAA-------VKPFDRSDV 1260 Query: 1985 VRSAVIVCGDGIDHLPRVSPHFIAETRLPYHSDMPSAMPSQCSLSPPTFSAP---VFEPV 1815 + A I GDG + PR+ F+ ETR P H D+PS P + PP+ AP FEPV Sbjct: 1261 LSWAPIAVGDGETNAPRIDTSFLPETRRPLHFDLPSFRPQ--APPPPSDPAPSGTAFEPV 1318 Query: 1814 YPGEDFETLASTFLPAHDPHLREIIFKGERSAQFPYLNQPFDLFLQPQTLIAAQHHGQKD 1635 YPGE FE L + FLPAHDP REI ++G+ S QFP++++ + L QP TL+A H + D Sbjct: 1319 YPGETFENLVAHFLPAHDPTDREIHWRGQLSNQFPHIDKEYHLAAQPMTLLAPIHDSKHD 1378 Query: 1634 STLLPASIPKRLRFRRNSTPYVISPKDQLLGELLFISLCKAYNRHPSSVEPFDEALFADC 1455 TLL ASI KRLRFR +++PY I+P+D+LLG+LL+ SLC+AY+R P+S PFDEALF +C Sbjct: 1379 PTLLAASIQKRLRFRPSASPYRITPRDELLGQLLYESLCRAYHRSPTSTHPFDEALFVEC 1438 Query: 1454 INLNEFAQLSSKTQTTIMANASRSDPDWRWSAVRIFSKSQHKTNEASIFGSWKACQTLAL 1275 I+LNEFAQL+SKTQ IM NA RSDPDWRWSAVRIFSK+QHK NE SIFG+WKACQTLAL Sbjct: 1439 IDLNEFAQLTSKTQAVIMGNARRSDPDWRWSAVRIFSKTQHKVNEGSIFGAWKACQTLAL 1498 Query: 1274 MHDAVVLLLGPVKKYQRLFDNRDRPANIYVHASHTPFQMSDWCRENLSSCEHVANDYTAF 1095 MHDAVVLLLGPVKKYQR+FD RDRPA++Y+HA TP MS WC+ +L+ +ANDYTAF Sbjct: 1499 MHDAVVLLLGPVKKYQRVFDARDRPAHLYIHAGQTPSSMSLWCQTHLTPAVKLANDYTAF 1558 Query: 1094 DQSQHGEAVVLEIKKMRRLSIPEPLIQLHAYLKTNVTTQFGPLTCMRLTGEPGTYDDNTD 915 DQSQHGEAVVLE KKM RLSIP+ LI LH YLKT+V TQFGPLTCMRLTGEPGTYDDNTD Sbjct: 1559 DQSQHGEAVVLERKKMERLSIPDHLISLHVYLKTHVETQFGPLTCMRLTGEPGTYDDNTD 1618 Query: 914 YNLAVIHSQYLMASIPHMVSGDDSLIDRQPLPNPLWITIGPMLHLRFKLEVTRYPLFCGY 735 YNLAVI+ +Y A +P MVSGDDSL+D +P P W+ I P+L LRFK E Y FCGY Sbjct: 1619 YNLAVINLEYAAAHVPTMVSGDDSLLDFEPPRRPEWVAIEPLLALRFKKERGLYATFCGY 1678 Query: 734 LVGPSGAVRSPITLFAKSLMALDDGSLDDKLASYLTEFSVGHSLGQEMWNLIPVEQVHYQ 555 G VRSPI LFAK +A+DD S+ DKLA+YL EF+VGHSLG +W+ +P+ V +Q Sbjct: 1679 YASRVGCVRSPIALFAKLAIAVDDSSISDKLAAYLMEFAVGHSLGDSLWSALPLSAVPFQ 1738 Query: 554 AALFDFFCRKASREQKLVLKIGEVPDTIISTILSSARAIARPLYAYLSSSARKLLLKGSK 375 +A FDFFCR+A R+ KL L +GEVP+TII LS ++ +Y+ L S R +L S+ Sbjct: 1739 SACFDFFCRRAPRDLKLALHLGEVPETIIQR-LSHLSWLSHAVYSLLPSRLRLAILHSSR 1797 Query: 374 TYRPFDTEESL-QFEGVLQHAVSIATPPP 291 +R + ++ +G L H P P Sbjct: 1798 QHRSLPEDPAVSSLQGELLHTFHAPMPSP 1826 Score = 468 bits (1204), Expect = e-128 Identities = 271/638 (42%), Positives = 356/638 (55%), Gaps = 14/638 (2%) Frame = -1 Query: 5954 LFESLSNTIHRDTVTSPLVEAVADPLRDSLEKYPYAVSPSLTSFLSKRGINISGYGAKTH 5775 + E+LS+TIHRDT+ +PL+E +A P RDSL +P+AV S FL + GI ++G+G K H Sbjct: 27 VIETLSSTIHRDTIAAPLMETLASPYRDSLRDFPWAVPASALPFLQECGITVAGHGFKAH 86 Query: 5774 PHPAHKNIENYILQDVWPNLIRNQSSVLFMKPSKFRKLEQKDSNFHELINYRLTPQDTTR 5595 PHP HK IE ++L VWP+ + SSVLFMKPSKF KL++ ++NF L NYRLT +DT R Sbjct: 87 PHPVHKTIETHLLHKVWPHYAQVPSSVLFMKPSKFAKLQRGNANFSALHNYRLTAKDTPR 146 Query: 5594 YPSSSTTLPAHSTVFMHDALMYYTPGDIADLFLSAPHLTQLYATLVVPPESSFTDTSFFP 5415 YP++ST+LP T FMHDALMYYTP I DLFLS P L +LYA+LVVPPESSFT S P Sbjct: 147 YPNTSTSLPDTETAFMHDALMYYTPAQIVDLFLSCPKLEKLYASLVVPPESSFTSISLHP 206 Query: 5414 ELYNFHFHDTDLVYELEGNPSHHYIQPKSALDWLRTSTIRCSDLTLSISILESIGPVHHL 5235 +LY F F L+YELEGNP+H+Y QP+SALDWLRT+TIR ++L++S L+S GP H L Sbjct: 207 DLYRFRFDGDRLIYELEGNPAHNYTQPRSALDWLRTTTIRGPGVSLTVSRLDSWGPCHSL 266 Query: 5234 LIQRGLAPKHRENTTRDFDTPDCFLLPAPTSLSQNVRDRLVPLAAYHSLRAYVMAVRTLR 5055 LIQRG+ P H E+ + F P +P P+SL Q++R RLVP Y++L YV AVRTLR Sbjct: 267 LIQRGIPPMHAEHDSISFRGPRAVAIPEPSSLHQDLRHRLVPEDVYNALFLYVRAVRTLR 326 Query: 5054 TTDPAGFVRTQSTKPEFAWVTAEAWDSLQNFALLTCNQRPAVSYLTFASSFARIKHWXXX 4875 TDPAGFVRTQ +K E+AWVT+ AWD+L +FALLT RP S+ F+S+F R++HW Sbjct: 327 VTDPAGFVRTQCSKSEYAWVTSSAWDNLAHFALLTAPHRPRTSFYLFSSTFQRLEHWVRH 386 Query: 4874 XXXXXXXXXXXXXXAVSFTTVKVAHYCSTRQIDSLILFGKQIVRPSCPLN--SPFSLHQY 4701 S + S I L L + ++ P SP S Sbjct: 387 HTFLLAGLTTAFALPPSAWLANLVARTSASHIQGLALARRWLITPPHLFRPPSPPSFALL 446 Query: 4700 FSRTAQLPPSLSTQLPRFELVTS--PRIITKWSPCLARFLLSTPFFRTLTTQLNFLSKKC 4527 R + P L FE S P++ ++ P LAR L P + L Sbjct: 447 LQRNSTGPILLRGSRLEFEAFPSLAPQLARRF-PFLARLLPQKPINPWIVASL------- 498 Query: 4526 FFAKGFPHSRKLXXXXXXXXXILWAYRRFMGPDAPQAMFDQYNGYFNPKPWKLRIAQGPT 4347 A P + A R F GPD PQAM D+Y+ F+P+ W+L + +GP Sbjct: 499 AVAVAIPAAS-------------LAVRWFFGPDTPQAMHDRYHTMFHPREWRLTLPRGPI 545 Query: 4346 KCSRGQFLPF------CPRPHSLIQXXXXXXDI-FLINAVSIDLQTEVPE-HIRSLALSK 4191 C R F P P P S + DL++ P+ H Sbjct: 546 SCGRSSFSPLPHPPSPTPAPDSRAGPLQPPSALPSTHEPAPADLESPAPQAHAPQTEPPS 605 Query: 4190 PLHYEPS--DDIPDPAPVLIPTKVANKITAISTSGAPQ 4083 P+ + + D P PAP PT A+ + T AP+ Sbjct: 606 PVIEQEARPDPFPAPAPRPAPTPSASAPSPAPTPSAPE 643 >ref|YP_003475889.1| replicase-associated polyprotein [Olive latent virus 3] gi|289467899|gb|ACN94861.2| replicase-associated polyprotein [Olive latent virus 3] Length = 2000 Score = 1083 bits (2800), Expect = 0.0 Identities = 591/1206 (49%), Positives = 759/1206 (62%), Gaps = 40/1206 (3%) Frame = -1 Query: 3821 TGSLDTVNVAIPDDTTPERSTLILDPSGFGEVSTFAQLYPDD-YVLGCAEFFCRKRHHGV 3645 +GSL +N + + + L DPSG G V+ F +L+P ++ G EF R R Sbjct: 807 SGSLTAINPTL-EPFEFNHALLGADPSGQGPVAQFNELFPSTLWLQGTGEFLTRSRVQAP 865 Query: 3644 STAPFPTMPCLLDAVGSCLGVTPAELWSTLCHHLPDSLLQNPQITSCGLSTDHLTALSHF 3465 S+AP+P M CLL A+ + + LW+ LC +LPDS L I GLSTDH L+ Sbjct: 866 SSAPYPAMDCLLHAIHTATRIPKPTLWAGLCSNLPDSFLDPQLIAKHGLSTDHFAVLARL 925 Query: 3464 YQFKAFVTSDQEPIPHPYGVDSAPTTIRFSHTTGN---PGHF-FITSDPGAPPPPKXXXX 3297 + + T GV A T R HT PGHF ++ P + Sbjct: 926 FSLRC--TFQSRSGTQTMGVADATHTFRIRHTPPTEDAPGHFEYMEEIPES-------LT 976 Query: 3296 XXXXXXXXXXLTTFRLNGELLPFQTVHNYRANVKRAKNLISNMKNGFDGVMATVDPQHPN 3117 +FR NG LLPF+ VH Y +NV RAKNLISNMKNGFDGVMA+ DP HP Sbjct: 977 GAFAQDLAHFALSFRFNGYLLPFKHVHTYTSNVSRAKNLISNMKNGFDGVMASADPLHPG 1036 Query: 3116 SAKEKFVTTDGILDIAKSRSIKLIHIAGFPGCGKSYPIQRLLLTAPRARNFRISVPTAEL 2937 +E+F++ D LDIA R +LIHI+GF GCGK+YPI +LL P R FR++VPT EL Sbjct: 1037 QTRERFLSMDNQLDIAVPRETRLIHISGFAGCGKTYPITQLL-KKPVFRQFRVAVPTTEL 1095 Query: 2936 RHEWKASMDLEPKNNWRIGTWEXXXXXXXXXLVVDEIYKMPRGYLDL--AILMDPHLEMV 2763 R EWK + LEP + WRIGTWE LV+DE+YKMPRGYLDL L+ P ++ Sbjct: 1096 RSEWKDLLTLEPADRWRIGTWESSLLKSSRVLVIDEVYKMPRGYLDLRPTPLIRPIQFVI 1155 Query: 2762 IVLGDPLQGEYHSTHPQSSNHKLSSEINHLRPYLDFYCAWTRRCPKLIADFFGVPTTSQE 2583 I P QGEY+STHP SSN +++SEI HL+PY+DFYC W+ R PK +A VPTTS + Sbjct: 1156 IPWRSPSQGEYNSTHPHSSNLRITSEIIHLQPYIDFYCFWSYRIPKNVAACLKVPTTSNK 1215 Query: 2582 PGFCRPVNHLPMNCPILTNSHSAALTLTEAHSRACTISASQGSTYSSPVVIHLDRHSSQL 2403 GF R +N +P +LT S S+ TL + + TI++SQGST IHLDR+S L Sbjct: 1216 TGFIRRLNSIPNANKVLTCSQSSMKTLNQCGFSSVTIASSQGSTLQEAACIHLDRNSRNL 1275 Query: 2402 SNSMALVALTRSTKGVLFSGDQSILQPGPHSAKLFSQLTQFQSSHSPDDRYPIQTHFIEQ 2223 SNS +LVA+TRS G++F+GD +L S LFS L Q +S ++ F + Sbjct: 1276 SNSHSLVAITRSKSGIIFTGDFHLLDGTTSSNYLFSCLAQGKS-------VDLEMLFPKT 1328 Query: 2222 LRGVTLISTPLKSRK--LVGACP--SEVKHSSTVRDFTH--------------HAIRGST 2097 + P++SR+ LVG+ ++ + + DF+ + +GS Sbjct: 1329 FPPCPRLLQPIRSRRTILVGSSEDWAQFYRPTPLEDFSRFQATPVPETAIPCPNGYQGSP 1388 Query: 2096 --VRDPSYQ--------PSLAHVVRHTSP-----AIYHSELNRLHPDFKGDAVRSAVIVC 1962 + PS+ S+ + TSP ++ +P+ GD + + IV Sbjct: 1389 EMIEGPSHANLPFEADLDSIDPLEGETSPYSLGFGVHARTARTTNPEATGDIITQSEIVL 1448 Query: 1961 GDGIDHLPRVSPHFIAETRLPYHSDMPSAMPSQCSLSPPTFSAPVFEPVYPGEDFETLAS 1782 GDG ++P+VS HF+ ETR P H D PSA+PS SP S FEPVYPGE FE +A Sbjct: 1449 GDGELNMPQVSTHFLPETRRPLHFDNPSALPSSTVPSPVDLSRTAFEPVYPGETFENIAG 1508 Query: 1781 TFLPAHDPHLREIIFKGERSAQFPYLNQPFDLFLQPQTLIAAQHHGQKDSTLLPASIPKR 1602 F+ DP + EII + S QFP L+QPF L QP +L+AA H+ Q D TLLPASI KR Sbjct: 1509 HFMGPRDPEVLEIIHNDQMSNQFPLLDQPFSLAAQPSSLMAAIHNSQNDPTLLPASIGKR 1568 Query: 1601 LRFRRNSTPYVISPKDQLLGELLFISLCKAYNRHPSSVEPFDEALFADCINLNEFAQLSS 1422 LRFR ++ PY I+ +DQ+LG LLF +LC+AY RHP +V PF+ FA+CINLNE+AQL+S Sbjct: 1569 LRFRPSNAPYPITAEDQILGSLLFEALCRAYRRHPEAVVPFNPIAFAECINLNEYAQLTS 1628 Query: 1421 KTQTTIMANASRSDPDWRWSAVRIFSKSQHKTNEASIFGSWKACQTLALMHDAVVLLLGP 1242 KTQ I++NA RSDPDWR+SAVRIFSK+QHK N+ S FGSWKACQTLALMHDAV+LLLGP Sbjct: 1629 KTQAVIISNARRSDPDWRYSAVRIFSKTQHKVNDGSFFGSWKACQTLALMHDAVILLLGP 1688 Query: 1241 VKKYQRLFDNRDRPANIYVHASHTPFQMSDWCRENLSSCEHVANDYTAFDQSQHGEAVVL 1062 VKKYQRLFD+ DRP++IY+HA HTP MS+WC++NL+ H+ NDYT+FDQSQHGEAVVL Sbjct: 1689 VKKYQRLFDSEDRPSHIYIHAGHTPQDMSNWCQQNLTDSIHLTNDYTSFDQSQHGEAVVL 1748 Query: 1061 EIKKMRRLSIPEPLIQLHAYLKTNVTTQFGPLTCMRLTGEPGTYDDNTDYNLAVIHSQYL 882 E KM RLSIP+ LI LH +LK NV+TQFGPLTCMRLTGEPGTYDDN+DYNLAVIH QY Sbjct: 1749 EQMKMARLSIPQHLIDLHTHLKCNVSTQFGPLTCMRLTGEPGTYDDNSDYNLAVIHLQYA 1808 Query: 881 MASIPHMVSGDDSLIDRQPLPNPLWITIGPMLHLRFKLEVTRYPLFCGYLVGPSGAVRSP 702 + S P MVSGDDSL+D +P W I P+L LRFK E+ RY LFCGY VG SGAVR P Sbjct: 1809 VGSTPCMVSGDDSLLDSKPPIRDEWTGIAPLLALRFKTELDRYSLFCGYFVGSSGAVRCP 1868 Query: 701 ITLFAKSLMALDDGSLDDKLASYLTEFSVGHSLGQEMWNLIPVEQVHYQAALFDFFCRKA 522 LFAK ++A+DDGS+ K+ASYLTEFS+GHSLG E W L+PVEQV +Q+A FDFFCR Sbjct: 1869 RALFAKIMIAVDDGSIPLKIASYLTEFSIGHSLGDEFWQLLPVEQVVFQSACFDFFCRNC 1928 Query: 521 SREQKLVLKIGEVPDTIISTILSSARAIARPLYAYLSSSARKLLLKGSKTYRPFDTEESL 342 KL+L++GE P +I+ + + +Y+ LS++AR LL+K T P ++ E Sbjct: 1929 PPAAKLLLRLGEAPQSILEATFGKLKWASNAVYSMLSATARHLLIKSRLTRPPPESVEVS 1988 Query: 341 QFEGVL 324 Q +G L Sbjct: 1989 QLQGQL 1994 Score = 466 bits (1199), Expect = e-128 Identities = 249/553 (45%), Positives = 339/553 (61%), Gaps = 1/553 (0%) Frame = -1 Query: 5954 LFESLSNTIHRDTVTSPLVEAVADPLRDSLEKYPYAVSPSLTSFLSKRGINISGYGAKTH 5775 L + L+ T+HRDT+ +PL+E ++ PLRDSL YP++V PSL + L GIN +G K H Sbjct: 132 LVDFLNPTVHRDTIAAPLLETISQPLRDSLRTYPWSVPPSLQTHLQSLGINAHNFGYKPH 191 Query: 5774 PHPAHKNIENYILQDVWPNLIRNQSSVLFMKPSKFRKLEQKDSNFHELINYRLTPQDTTR 5595 PHPAHK IE ++L + W +L S++LFMKPSKF+KL ++ NF EL NYRLT +D+TR Sbjct: 192 PHPAHKVIETHLLHEHWRHLATQPSAILFMKPSKFQKLHNQNDNFTELHNYRLTSKDSTR 251 Query: 5594 YPSSSTTLPAHSTVFMHDALMYYTPGDIADLFLSAPHLTQLYATLVVPPESSFTDTSFFP 5415 YP +S ++P ++F+HDALMY+TP I DLF +P L + +A+LV PPES+FTD SF+P Sbjct: 252 YPETSRSIPNLPSIFLHDALMYFTPSQILDLFERSPALEKCFASLVCPPESNFTDISFYP 311 Query: 5414 ELYNFHFHDTDLVYELEGNPSHHYIQPKSALDWLRTSTIRCSDLTLSISILESIGPVHHL 5235 ELY F + YELEGNP+ Y QPKSA++WL+ +TI+ + +LSI+ILES GP H L Sbjct: 312 ELYRFRAVGDSITYELEGNPASSYTQPKSAIEWLKITTIKGPNFSLSITILESWGPCHSL 371 Query: 5234 LIQRGLAPKHRENTTRDFDTPDCFLLPAPTSLSQNVRDRLVPLAAYHSLRAYVMAVRTLR 5055 LIQRGL P H+E++T+ F TP+ LLPAP+ L Q++R RLVP Y S+ YV AVRTLR Sbjct: 372 LIQRGLLPLHQEHSTQAFKTPEAILLPAPSHLQQDLRHRLVPTRVYESIFVYVRAVRTLR 431 Query: 5054 TTDPAGFVRTQSTKPEFAWVTAEAWDSLQNFALLTCNQRPAVSYLTFASSFARIKHWXXX 4875 TDP+G+VRTQS+KPE++WVT AWD+L NFALLTC RP Y + S+ R+ W Sbjct: 432 VTDPSGYVRTQSSKPEYSWVTTAAWDNLANFALLTCAHRPRARYYLYWSTLDRLMGWIRA 491 Query: 4874 XXXXXXXXXXXXXXAVSFTTVKVAHYCSTRQIDSLILFGKQIVRPSCPLNSPFSLHQYFS 4695 ++ +A ++DSL L + +++PS P N PF L + F Sbjct: 492 HKLALLTASTPLASLGLASSALLACRPFWMRLDSLQLLNRWVIKPSFPRNLPFLLPKAFQ 551 Query: 4694 RTAQLPPSLSTQLPRFELVTSPRIITKWSPCLARFLLSTPFFRTLTTQLNFLSKKCFFAK 4515 A L + LPR RI+ ++ L L PF R L + S Sbjct: 552 PKASL--FKAEFLPRH---APSRILPEFFDAL---LKKAPFLRPLFSDAPIPS------- 596 Query: 4514 GFPHSRKLXXXXXXXXXILWAYRRFMGPDAPQAMFDQYNGYFNPKPWKLRIAQGPTKCSR 4335 + L I + RRF+GP++PQA+ D+Y YF+PKPW+L + QGP + Sbjct: 597 ---WAWALCATGVAIPIIALSIRRFLGPNSPQALLDEYQSYFHPKPWQLILEQGPIFANP 653 Query: 4334 GQFLPFC-PRPHS 4299 F P C P P S Sbjct: 654 EPFSPHCQPIPSS 666 >ref|NP_044447.1| replicase-associated polyprotein [Oat blue dwarf virus] gi|1843580|gb|AAC57874.1| replicase-associated polyprotein [oat blue dwarf virus] Length = 2066 Score = 1077 bits (2786), Expect = 0.0 Identities = 598/1177 (50%), Positives = 749/1177 (63%), Gaps = 14/1177 (1%) Frame = -1 Query: 3764 STLILDPSGFGEVSTFAQLYPDDYVLGCAEFFCRKRHHGVSTAPFPTMPCLLDAVGSCLG 3585 S L DPS G V + L+P +Y F R R G S P+P M CLL A Sbjct: 690 SPLARDPSASGPVRFYRDLFPANYAGDSGTFDFRARASGRSPTPYPAMDCLLVATEQATR 749 Query: 3584 VTPAELWSTLCHHLPDSLLQNPQITSCGLSTDHLTALSHFYQFKAFVTSDQEPIPHPYGV 3405 ++ LW L PDS L I GLSTDH L+H + A S + I G+ Sbjct: 750 ISREALWDCLTATCPDSFLDPKSIAQHGLSTDHFVILAHRFSLCANFHSAEHVIQ--LGM 807 Query: 3404 DSAPTTIRFSHTTGN---PGHFFITSDPGAPPPPKXXXXXXXXXXXXXXLTTFRLNGELL 3234 A + +HT G+ PGHF + G P F ++G+LL Sbjct: 808 ADATSIFMINHTAGSAGLPGHFSLRL--GDQP---RALNGGLAQDLAVAALRFNISGDLL 862 Query: 3233 PFQTVHNYRANVKRAKNLISNMKNGFDGVMATVDPQHPNSAKEKFVTTDGILDIAKSRSI 3054 P ++VH YR+ KRAKNL+SNMKNGFDGVMA+++P P+ A+EK V DG+LDIA+ RS+ Sbjct: 863 PTRSVHTYRSWPKRAKNLVSNMKNGFDGVMASINPIRPSDAREKIVALDGLLDIARPRSV 922 Query: 3053 KLIHIAGFPGCGKSYPIQRLLLTAPRARNFRISVPTAELRHEWKASMDLEPKNNWRIGTW 2874 +LIHIAGFPGCGK++PI +LL TA R+F+++VPT ELR EWK M L P WR GTW Sbjct: 923 RLIHIAGFPGCGKTHPITKLLHTAA-FRDFKLAVPTTELRSEWKELMKLSPSQAWRFGTW 981 Query: 2873 EXXXXXXXXXLVVDEIYKMPRGYLDLAILMDPHLEMVIVLGDPLQGEYHSTHPQSSNHKL 2694 E LV+DEIYK+PRGYLDLAI D +E VI LGDPLQGEYHSTHP SSN +L Sbjct: 982 ESSLLKSARILVIDEIYKLPRGYLDLAIHSDSSIEFVIALGDPLQGEYHSTHPSSSNSRL 1041 Query: 2693 SSEINHLRPYLDFYCAWTRRCPKLIADFFGVPTTSQEPGFCRPVNHLPMNCPILTNSHSA 2514 E++HL PYLD+YC W+ R P+ +A FF V + + GF R P +LTNS ++ Sbjct: 1042 IPEVSHLAPYLDYYCLWSYRVPQDVAAFFQVQSHNPALGFARLSKQFPTTGRVLTNSQNS 1101 Query: 2513 ALTLTEAHSRACTISASQGSTYSSPVVIHLDRHSSQLSNSMALVALTRSTKGVLFSGDQS 2334 LT+T+ A TI++SQGSTYS IHLDR+SS LS S +LVALTRS GV FSGD + Sbjct: 1102 MLTMTQCGYSAVTIASSQGSTYSGATHIHLDRNSSLLSPSNSLVALTRSRTGVFFSGDPA 1161 Query: 2333 ILQPGPHSAKLFSQLTQFQSSHSPDDRYPIQTHFIEQLRGVTLISTPLKSR--KLVGA-C 2163 +L GP+S +FS Q +S H I+ F TL+ +PL+ R +L GA Sbjct: 1162 LLNGGPNSNLMFSAFFQGKSRH-------IRAWFPTLFPTATLLFSPLRQRHNRLTGALA 1214 Query: 2162 PSEVKHSSTVRDFTHHAIRGSTVRDPSYQPSLAHVVRHTSPAIYHSELNRLHPDFKGDAV 1983 P++ H + D PS P A S + + P + D + Sbjct: 1215 PAQPSHL-LLPDL------------PSLPPLPASGPYSRSFPVRSRFAAAVKPSDRSDVL 1261 Query: 1982 RSAVIVCGDGIDHLPRVSPHFIAETRLPYHSDMPSAMPSQCSLSPPTFSAP---VFEPVY 1812 A I GDG + PR+ F+ ETR P H D+PS P + PP+ AP FEPVY Sbjct: 1262 SWAPIAVGDGETNAPRIDTSFLPETRRPLHFDLPSFRPQ--APPPPSDPAPSGTAFEPVY 1319 Query: 1811 PGEDFETLASTFLPAHDPHLREIIFKGERSAQFPYLNQPFDLFLQPQTLIAAQHHGQKDS 1632 PGE FE L + FLPAHDP REI ++ + S QFP++++ + L QP TL+A H + D Sbjct: 1320 PGETFENLVAHFLPAHDPTDREIHWRRQLSNQFPHVDKEYHLAAQPMTLLAPIHDSKHDP 1379 Query: 1631 TLLPASIPKRLRFRRNSTPYVISPKDQLLGELLFISLCKAYNRHPSSVEPFDEALFADCI 1452 TLL ASI KRLRFR +++PY ISP+D+LLG+LL+ SLC+AY+R P++ PFDEALF +CI Sbjct: 1380 TLLAASIQKRLRFRPSASPYRISPRDELLGQLLYESLCRAYHRSPTTTHPFDEALFVECI 1439 Query: 1451 NLNEFAQLSSKTQTTIMANASRSDPDWRWSAVRIFSKSQHKTNEASIFGSWKACQTLALM 1272 +LNEFAQL+SKTQ IM NA RSDPDWRWSAVRIFSK+QHK NE SIFG+WKACQTLALM Sbjct: 1440 DLNEFAQLTSKTQAVIMGNARRSDPDWRWSAVRIFSKTQHKVNEGSIFGAWKACQTLALM 1499 Query: 1271 HDAVVLLLGPVKKYQRLFDNRDRPANIYVHASHTPFQMSDWCRENLSSCEHVANDYTAFD 1092 HDAVVLLLGPVKKYQR+FD RDRPA++Y+HA TP MS WC+ +L+ +ANDYTAFD Sbjct: 1500 HDAVVLLLGPVKKYQRVFDARDRPAHLYIHAGQTPSSMSLWCQTHLTPAVKLANDYTAFD 1559 Query: 1091 QSQHGEAVVLEIKKMRRLSIPEPLIQLHAYLKTNVTTQFGPLTCMRLTGEPGTYDDNTDY 912 QSQHGEAVVLE KKM RLSIP+ LI LH +LKT+V TQFGPLTCMRLTGEPGTYDDNTDY Sbjct: 1560 QSQHGEAVVLERKKMERLSIPDHLISLHVHLKTHVETQFGPLTCMRLTGEPGTYDDNTDY 1619 Query: 911 NLAVIHSQYLMASIPHMVSGDDSLIDRQPLPNPLWITIGPMLHLRFKLEVTRYPLFCGYL 732 NLAVI+ +Y A +P MVSGDDSL+D +P P W+ I P+L LRFK E Y FCGY Sbjct: 1620 NLAVINLEYAAAHVPTMVSGDDSLLDFEPPRRPEWVAIEPLLALRFKKERGLYATFCGYY 1679 Query: 731 VGPSGAVRSPITLFAKSLMALDDGSLDDKLASYLTEFSVGHSLGQEMWNLIPVEQVHYQA 552 G VRSPI LFAK +A+DD S+ DKLA+YL EF+VGHSLG +W+ +P+ V +Q+ Sbjct: 1680 ASRVGCVRSPIALFAKLAIAVDDSSISDKLAAYLMEFAVGHSLGDSLWSALPLSAVPFQS 1739 Query: 551 ALFDFFCRKASREQKLVLKIGEVPDTIISTILSSARAIARPLYAYLSSSARKLLLKGSKT 372 A FDFFCR+A R+ KL L +GEVP+TII LS ++ +Y+ L S R +L S+ Sbjct: 1740 ACFDFFCRRAPRDLKLALHLGEVPETIIQR-LSHLSWLSHAVYSLLPSRLRLAILHSSRQ 1798 Query: 371 YRPFDTE---ESLQFEGVLQ--HAVSIATPPPRLTGG 276 +R + SLQ E +LQ HA + P L GG Sbjct: 1799 HRSLPEDPAVSSLQGE-LLQTFHAPMPSLPSLPLFGG 1834 Score = 469 bits (1207), Expect = e-129 Identities = 270/638 (42%), Positives = 357/638 (55%), Gaps = 14/638 (2%) Frame = -1 Query: 5954 LFESLSNTIHRDTVTSPLVEAVADPLRDSLEKYPYAVSPSLTSFLSKRGINISGYGAKTH 5775 + E+LS+TIHRDT+ +PL+E +A P RDSL +P+AV S FL + GI ++G+G K H Sbjct: 27 VIETLSSTIHRDTIAAPLMETLASPYRDSLRDFPWAVPASALPFLQECGITVAGHGFKAH 86 Query: 5774 PHPAHKNIENYILQDVWPNLIRNQSSVLFMKPSKFRKLEQKDSNFHELINYRLTPQDTTR 5595 PHP HK IE ++L VWP+ + SSVLFMKPSKF KL++ ++NF L NYRLT +DT R Sbjct: 87 PHPVHKTIETHLLHKVWPHYAQVPSSVLFMKPSKFAKLQRGNANFSALHNYRLTAKDTPR 146 Query: 5594 YPSSSTTLPAHSTVFMHDALMYYTPGDIADLFLSAPHLTQLYATLVVPPESSFTDTSFFP 5415 YP++ST+LP T FMHDALMYYTP I DLFLS P L +LYA+LVVPPESSFT S P Sbjct: 147 YPNTSTSLPDTETAFMHDALMYYTPAQIVDLFLSCPKLEKLYASLVVPPESSFTSISLHP 206 Query: 5414 ELYNFHFHDTDLVYELEGNPSHHYIQPKSALDWLRTSTIRCSDLTLSISILESIGPVHHL 5235 +LY F F L+YELEGNP+H+Y QP+SALDWLRT+TIR ++L++S L+S GP H L Sbjct: 207 DLYRFRFDGDRLIYELEGNPAHNYTQPRSALDWLRTTTIRGPGVSLTVSRLDSWGPCHSL 266 Query: 5234 LIQRGLAPKHRENTTRDFDTPDCFLLPAPTSLSQNVRDRLVPLAAYHSLRAYVMAVRTLR 5055 LIQRG+ P H E+ + F P +P P+SL Q++R RLVP Y++L YV AVRTLR Sbjct: 267 LIQRGIPPMHAEHDSISFRGPRAVAIPEPSSLHQDLRHRLVPEDVYNALFLYVRAVRTLR 326 Query: 5054 TTDPAGFVRTQSTKPEFAWVTAEAWDSLQNFALLTCNQRPAVSYLTFASSFARIKHWXXX 4875 TDPAGFVRTQ +KPE+AWVT+ AWD+L +FALLT RP S+ F+S+F R++HW Sbjct: 327 VTDPAGFVRTQCSKPEYAWVTSSAWDNLAHFALLTAPHRPRTSFYLFSSTFQRLEHWVRH 386 Query: 4874 XXXXXXXXXXXXXXAVSFTTVKVAHYCSTRQIDSLILFGKQIVRPSCPLN--SPFSLHQY 4701 S + S I L L + ++ P P S Sbjct: 387 HTFLLAGLTTAFALPPSAWLANLVARASASHIQGLALARRWLITPPHLFRPPPPPSFALL 446 Query: 4700 FSRTAQLPPSLSTQLPRFELVTS--PRIITKWSPCLARFLLSTPFFRTLTTQLNFLSKKC 4527 R + P L FE S P++ ++ P LAR L P + L Sbjct: 447 LQRNSTGPVLLRGSRLEFEAFPSLAPQLARRF-PFLARLLPQKPIDPWVVASL------- 498 Query: 4526 FFAKGFPHSRKLXXXXXXXXXILWAYRRFMGPDAPQAMFDQYNGYFNPKPWKLRIAQGPT 4347 A P + A R F GPD PQAM D+Y+ F+P+ W+L + +GP Sbjct: 499 AVAVAIPAAS-------------LAVRWFFGPDTPQAMHDRYHTMFHPREWRLTLPRGPI 545 Query: 4346 KCSRGQFLPF------CPRPHSLIQ-XXXXXXDIFLINAVSIDLQTEV-PEHIRSLALSK 4191 C R F P P P S + DL+ + P H Sbjct: 546 SCGRSSFSPLPHPPSPTPAPDSRAEPLQPPSAPPSTHEPAPADLEPQAPPAHAPQTEPPS 605 Query: 4190 PLHYEPS--DDIPDPAPVLIPTKVANKITAISTSGAPQ 4083 P+ + + + +P PAP+ PT A+ + T AP+ Sbjct: 606 PVIEQEARPNPLPAPAPLSAPTPSASAPSLAPTPSAPE 643 >gb|ACV53023.1| polyprotein [Blackberry virus S] Length = 2035 Score = 1076 bits (2782), Expect = 0.0 Identities = 583/1183 (49%), Positives = 754/1183 (63%), Gaps = 7/1183 (0%) Frame = -1 Query: 3821 TGSLDTVNVAIPDDTTPERSTLILDPSGFGEVSTFAQLYPDDYVLGCAEFFCRKRHHGVS 3642 +G + + A P+ PE S L D S G V F++L+P Y+ F R R G + Sbjct: 679 SGVVSNLTPAAPEPAAPEPSPLQADSSARGPVQLFSELFPGSYIGTTGAFNSRYRASGRA 738 Query: 3641 TAPFPT-MPCLLDAVGSCLGVTPAELWSTLCHHLPDSLLQNPQITSCGLSTDHLTALSHF 3465 P+P CLL + ++ +LW TL +LPD LL +I+ GLSTDH L+ F Sbjct: 739 PTPYPAGTDCLLVTIEQATSISRRDLWETLVTNLPDCLLAPCEISKHGLSTDHFAVLAFF 798 Query: 3464 YQFKAFVTSDQEPIPHPYGVDSAPTTIRFSHTTGNP---GHFFITSDPGAPPPPKXXXXX 3294 Y + + P+ G+ A T R H + GHF + D P Sbjct: 799 YSLRVTFLTSHGPVD--LGMSDATTNFRIDHQPESKDLMGHFSLHQDS----KPVPTLNG 852 Query: 3293 XXXXXXXXXLTTFRLNGELLPFQTVHNYRANVKRAKNLISNMKNGFDGVMATVDPQHPNS 3114 T F L+G LLPF TVH + RAKNLISNMKNGFDGV+A +DP H ++ Sbjct: 853 GTGSELATAATRFNLDGCLLPFNTVHTFVTAPSRAKNLISNMKNGFDGVLANIDPHHTST 912 Query: 3113 AKEKFVTTDGILDIAKSRSIKLIHIAGFPGCGKSYPIQRLLLTAPRARNFRISVPTAELR 2934 A+++ + DGI+D+AK R ++L HIAGF GCGKSYPI RLL T P R F+++VPT ELR Sbjct: 913 ARDRLLCLDGIIDVAKPRRVRLFHIAGFAGCGKSYPIARLLKT-PLFREFKVAVPTVELR 971 Query: 2933 HEWKASMDLEPKNNWRIGTWEXXXXXXXXXLVVDEIYKMPRGYLDLAILMDPHLEMVIVL 2754 EWK + + P WR+ TWE LV+DE+YKMPRGY+DLA+ DP +E+VI+L Sbjct: 972 AEWKDLLKIRPGAQWRLSTWESSLLKSARILVIDEVYKMPRGYVDLAVHADPTIELVILL 1031 Query: 2753 GDPLQGEYHSTHPQSSNHKLSSEINHLRPYLDFYCAWTRRCPKLIADFFGVPTTSQEPGF 2574 GDPLQG YHSTHP S+N +LS E ++L Y+DFYC W+ R P+ +A FFGV +T+ PGF Sbjct: 1032 GDPLQGVYHSTHPSSTNSRLSPETHYLSKYIDFYCLWSHRIPQDVAKFFGVHSTNLAPGF 1091 Query: 2573 CRPVNHLPMNCPILTNSHSAALTLTEAHSRACTISASQGSTYSSPVVIHLDRHSSQLSNS 2394 + V +L + ILTNS ++ TL + + TI++SQGSTY I LDR+S+ LS+S Sbjct: 1092 SKWVPNLSPSSKILTNSQNSMKTLVDCGFASVTIASSQGSTYPGATNILLDRNSALLSHS 1151 Query: 2393 MALVALTRSTKGVLFSGDQSILQPGPHSAKLFSQLTQFQSSHSPDDRYPIQTHFIEQLRG 2214 +LVALTRS KGV+F+GD+ +L+ GP S LFS+ + + F +L Sbjct: 1152 NSLVALTRSKKGVVFTGDRKMLEEGPTSNLLFSR-------YFTGKVVSLAGLFPSELPK 1204 Query: 2213 VTLISTPLKSR--KLVGACPSEVKHSSTVRDFTHHAIRGSTVRDPSYQPSLAHVVRHTSP 2040 ++ PL SR KL GA HAI + P + S+ TS Sbjct: 1205 CPHLTVPLTSRSVKLSGA------------GLYDHAIPFRSASAPMIKSSV------TSD 1246 Query: 2039 AIYHSELNRLHPDFKGDAVRSAVIVCGDGIDHLPRVSPHFIAETRLPYHSDMPSAMPSQC 1860 I D VR + GDG + P++S HF+ ETR P H D+PS PS Sbjct: 1247 VIL-------------DPVRPFL---GDGDLNAPQISTHFLPETRRPLHFDIPSGKPSSD 1290 Query: 1859 SLSPPTFSAPVFEPVYPGEDFETLASTFLPAHDPHLREIIFKGERSAQFPYLNQPFDLFL 1680 S + + PV EPVYPGE FE LA+ FLP HDP REI F+G+ S QFP++N+PF+L Sbjct: 1291 SPASAEPTVPVHEPVYPGETFENLAAHFLPCHDPEDREIHFRGQLSNQFPHINRPFELAC 1350 Query: 1679 QPQTLIAAQHHGQKDSTLLPASIPKRLRFRRNSTPYVISPKDQLLGELLFISLCKAYNRH 1500 Q +L+AA H + D TLLPASIPKRLRFR +S PY ++ KD++LG LL+ LC+AY+R+ Sbjct: 1351 QSSSLLAAVHSERDDPTLLPASIPKRLRFRPSSAPYRLTAKDEVLGSLLYEGLCRAYHRN 1410 Query: 1499 PSSVEPFDEALFADCINLNEFAQLSSKTQTTIMANASRSDPDWRWSAVRIFSKSQHKTNE 1320 +V PF+E L+ +CI LNEFAQLSSKTQ+ IMAN+ RSDPDWR+SAVRIFSK+QHK NE Sbjct: 1411 SFTVLPFNETLYLECIALNEFAQLSSKTQSVIMANSKRSDPDWRYSAVRIFSKAQHKVNE 1470 Query: 1319 ASIFGSWKACQTLALMHDAVVLLLGPVKKYQRLFDNRDRPANIYVHASHTPFQMSDWCRE 1140 SIFG+WKACQTLALMHDAVVLLLGPVKKYQR+FD +DRPA++YVHA +TP QMS WC+ Sbjct: 1471 NSIFGNWKACQTLALMHDAVVLLLGPVKKYQRMFDAQDRPAHLYVHAGNTPAQMSSWCQN 1530 Query: 1139 NLSSCEHVANDYTAFDQSQHGEAVVLEIKKMRRLSIPEPLIQLHAYLKTNVTTQFGPLTC 960 +L+ H+ANDYTAF QSQHGEAVVLE KKM RLSIP+ LI LH +LKTNV TQFGPLTC Sbjct: 1531 HLTDTVHLANDYTAFVQSQHGEAVVLERKKMERLSIPQALIDLHVFLKTNVETQFGPLTC 1590 Query: 959 MRLTGEPGTYDDNTDYNLAVIHSQYLMASIPHMVSGDDSLIDRQPLPNPLWITIGPMLHL 780 MRLTGEPGTYDDN+DYNLAVI+ +Y + +P M+SGDDSL+D +P P W + P+L L Sbjct: 1591 MRLTGEPGTYDDNSDYNLAVINLEYSASHVPTMISGDDSLLDFEPPRRPEWSALEPLLAL 1650 Query: 779 RFKLEVTRYPLFCGYLVGPSGAVRSPITLFAKSLMALDDGSLDDKLASYLTEFSVGHSLG 600 RFK E RY FCGY VG +GAVRSPI LFAK ++A+DDGSL DKL SYL EF+VGHSLG Sbjct: 1651 RFKKERDRYATFCGYYVGKAGAVRSPIALFAKLMIAVDDGSLGDKLISYLAEFAVGHSLG 1710 Query: 599 QEMWNLIPVEQVHYQAALFDFFCRKASREQKLVLKIGEVPDTIISTILSSARAIARPLYA 420 W L+P+E V +Q+A FDFFCR+A K+ LK+GEV ++I++ + + +Y+ Sbjct: 1711 DPFWTLLPLEAVLFQSACFDFFCRRAPPALKISLKLGEVSESIMARLGRGLNWASSAVYS 1770 Query: 419 YLSSSARKLLLKGSKTYRPF-DTEESLQFEGVLQHAVSIATPP 294 LSS+ R+ LL S+ R D E + +G L + P Sbjct: 1771 MLSSAQRRALLTSSRQGRSLPDNPEVSKLQGELLQSFQFVPQP 1813 Score = 429 bits (1104), Expect = e-117 Identities = 255/630 (40%), Positives = 351/630 (55%), Gaps = 6/630 (0%) Frame = -1 Query: 5954 LFESLSNTIHRDTVTSPLVEAVADPLRDSLEKYPYAVSPSLTSFLSKRGINISGYGAKTH 5775 + E+L+ T HRDT++S L+E V DP R SL++YP++V +FL GI+ SG+G K+H Sbjct: 47 VIEALAPTSHRDTISSALLETVVDPFRSSLQRYPWSVPTHHQTFLQNCGIDASGFGFKSH 106 Query: 5774 PHPAHKNIENYILQDVWPNLIRNQSSVLFMKPSKFRKLEQKDSNFHELINYRLTPQDTTR 5595 PHP HK +E ++ + W L S+V+FMKPSKF KL+ +F EL NYRL +D+TR Sbjct: 107 PHPVHKILETNLIHNTWSCLASTDSAVMFMKPSKFAKLQAAQPHFTELHNYRLVAKDSTR 166 Query: 5594 YPSSSTTLPAHSTVFMHDALMYYTPGDIADLFLSAPHLTQLYATLVVPPESSFTDTSFFP 5415 YP +S+ +P T+FMHD +MYYTP + DLFL +P L +LYA+LVVPPES FT + +P Sbjct: 167 YPVTSSHVPNIETIFMHDTIMYYTPAQVLDLFLQSPKLQKLYASLVVPPESDFTSITLYP 226 Query: 5414 ELYNFHFHDTDLVYELEGNPSHHYIQPKSALDWLRTSTIRCSDLTLSISILESIGPVHHL 5235 ELY F F LVYELE NP+H+Y QPKSAL WL+T+TI D +L++SIL+S GP+H L Sbjct: 227 ELYRFRFDGHSLVYELEQNPAHNYTQPKSALVWLKTTTIIGPDFSLTVSILDSQGPLHSL 286 Query: 5234 LIQRGLAPKHRENTTRDFDTPDCFLLPAPTSLSQNVRDRLVPLAAYHSLRAYVMAVRTLR 5055 LIQRG P H + T +F TP LLPAP+SL+Q+VR RLVP Y ++ YV VRTLR Sbjct: 287 LIQRGEPPLHSRHDTAEFRTPPAILLPAPSSLNQDVRHRLVPKKVYDAVFLYVRTVRTLR 346 Query: 5054 TTDPAGFVRTQSTKPEFAWVTAEAWDSLQNFALLTCNQRPAVSYLTFASSFARIKHW-XX 4878 TDPAGF+RTQS+K E +WVT+ AWD+L +FAL T + RP +Y F+S+ AR+ HW Sbjct: 347 VTDPAGFIRTQSSKAEHSWVTSFAWDNLAHFALQTASHRPRTTYYLFSSALARLSHWCRN 406 Query: 4877 XXXXXXXXXXXXXXXAVSFTTVKVAHYCSTRQIDSLILFGKQIVRPSCPLNSPFSLHQYF 4698 A + +++ V+ + + +++SL +F + I P L +P + Sbjct: 407 HQLALSWASVVAISPAAALSSLSVSKFLRS-ELNSLAIFRRWIKAPPHFLFAPKAPFLSM 465 Query: 4697 S-RTAQLPPSL--STQLPRFELVTSPRIITKWSPCLARFLLSTPFFRTLTTQLNFLSKKC 4527 S R + P L +T T+ + +P LA F P R FL+ Sbjct: 466 SFRALRTGPLLFANTGFQTRLFPTAAQNFCSANPLLASFFPVKPLHRGA-----FLAS-- 518 Query: 4526 FFAKGFPHSRKLXXXXXXXXXILWAYRRFMGPDAPQAMFDQYNGYFNPKPWKLRIAQGPT 4347 A P L R+F+GPD+PQ+M D Y F+P W+L + P Sbjct: 519 LLAASVP-------------VALLLVRQFVGPDSPQSMHDAYADLFHPADWRLIFNRKPL 565 Query: 4346 KCSRGQFLPF--CPRPHSLIQXXXXXXDIFLINAVSIDLQTEVPEHIRSLALSKPLHYEP 4173 S FLP P P L Q I +++I + P SLA P P Sbjct: 566 FASPEPFLPITTVPAPVDLPQ----------IESIAIPAPSPAPPSPTSLA---PTPIPP 612 Query: 4172 SDDIPDPAPVLIPTKVANKITAISTSGAPQ 4083 DPAP A + + AP+ Sbjct: 613 VTSTLDPAPASASAPAATPPAIAAPAPAPE 642 >ref|NP_115454.1| polyprotein [Maize rayado fino virus] gi|81964785|sp|Q91TW9.1|POLG_MRFVC RecName: Full=Genome polyprotein; Includes: RecName: Full=RNA-directed RNA polymerase; Includes: RecName: Full=Helicase; Includes: RecName: Full=Methyltransferase; Contains: RecName: Full=RNA replication protein; Contains: RecName: Full=Capsid protein CP1; Short=CP1; AltName: Full=Coat protein gi|14030260|gb|AAK52838.1|AF265566_1 polyprotein [maize rayado fino virus] Length = 2027 Score = 1075 bits (2781), Expect = 0.0 Identities = 579/1171 (49%), Positives = 740/1171 (63%), Gaps = 8/1171 (0%) Frame = -1 Query: 3806 TVNVAIPDDTTPERSTLILD--PSGFGEVSTFAQLYPDDYVLGCAEFFCRKRHHGVSTAP 3633 TV P PE T LD PS G V F +L Y+ F R R+ S+ P Sbjct: 656 TVFAVTPGPRAPEPDTARLDADPSASGPVMEFRELQKGAYIEPTGAFLTRARNSVSSSIP 715 Query: 3632 FPTMP-CLLDAVGSCLGVTPAELWSTLCHHLPDSLLQNPQITSCGLSTDHLTALSHFYQF 3456 +PT CLL AV G+ LW+ LC +LPDS+L + + + GL+TDH L+ + Sbjct: 716 YPTRAACLLVAVSQATGLPTRTLWAALCANLPDSVLDDGSLATLGLTTDHFAVLARIFSL 775 Query: 3455 KAFVTSDQEPIPHPYGVDSAPTTIRFSHTTGNPGHFFITSDPGAPPPPKXXXXXXXXXXX 3276 + S+ + G+ A + HT PGHF + +D + P Sbjct: 776 RCRFVSEHGDVE--LGLHDATSRFTIRHT---PGHFELVADNFSLPALVGASSVPGADLA 830 Query: 3275 XXXLTTFRLNGELLPFQTVHNYRANVKRAKNLISNMKNGFDGVMATVDPQHPNSAKEKFV 3096 + +LPF+ VH +R +V+RAKNLISNMKNGFDGVMA +P P SA+E+F+ Sbjct: 831 EACKRFVAPDRTVLPFRDVHIHRTDVRRAKNLISNMKNGFDGVMAQANPLDPKSARERFL 890 Query: 3095 TTDGILDIAKSRSIKLIHIAGFPGCGKSYPIQRLLLTAPRARNFRISVPTAELRHEWKAS 2916 D LDIA R ++LIHIAGF GCGKS+PI LL T P R F+++VPT ELR EWKA Sbjct: 891 MLDSCLDIAAPRRVRLIHIAGFAGCGKSWPISHLLRT-PAFRVFKLAVPTTELRDEWKAL 949 Query: 2915 MDLEPKNNWRIGTWEXXXXXXXXXLVVDEIYKMPRGYLDLAILMDPHLEMVIVLGDPLQG 2736 MD ++ WR GTWE LV+DE+YKMPRGYLDLAI D ++ VI+LGDP+QG Sbjct: 950 MDPRDQDKWRFGTWESSLLKTARVLVIDEVYKMPRGYLDLAIHADAAIQFVILLGDPIQG 1009 Query: 2735 EYHSTHPQSSNHKLSSEINHLRPYLDFYCAWTRRCPKLIADFFGVPTTSQEPGFCRPVNH 2556 EYHSTHP SSN +LS E +LRPY+DFYC W+RR P+ +A VPTTS E GF R Sbjct: 1010 EYHSTHPSSSNARLSPEHRYLRPYVDFYCFWSRRIPQNVARVLDVPTTSTEMGFARYSQQ 1069 Query: 2555 LPMNCPILTNSHSAALTLTEAHSRACTISASQGSTYSSPVVIHLDRHSSQLSNSMALVAL 2376 P + IL ++ +A +L + A TI++SQGST + P +HLD HS +LS+ +LVA+ Sbjct: 1070 FPFSGKILISARDSAKSLADCGYHAVTIASSQGSTIAGPAYVHLDNHSRRLSHQHSLVAI 1129 Query: 2375 TRSTKGVLFSGDQSILQPGPHSAKLFSQLTQFQSSHSPDDRYPIQTHFIEQLRGVTLIST 2196 TRS G++F+GD++ + LFS + D R +++ F L ++ Sbjct: 1130 TRSKSGIVFTGDKAAADGTSSANLLFSAVLL-------DRRLSVRSLFSALLPCCPFVTE 1182 Query: 2195 PLKSRKLVGACPSEVKHSSTVRDFTHHAIRGSTVRDPSYQPSLAHVVRHTSPAIYHSELN 2016 P SR ++ +R Y + R P Sbjct: 1183 PPTSRAVL-------------------------LRGAGYGIARPLRARDAPP-------- 1209 Query: 2015 RLHPDFKGDAVR-SAVIVCGDGIDHLPRVSPHFIAETRLPYHSDMPSAMPSQCSLSP--P 1845 L PD+ GD + S+ + GDG + P+VS HF+ ETR P H D+PSA Q + P P Sbjct: 1210 -LGPDYVGDVILDSSAPILGDGSANAPQVSTHFLPETRRPLHFDIPSAR-HQVADHPLAP 1267 Query: 1844 TFSAPVFEPVYPGEDFETLASTFLPAHDPHLREIIFKGERSAQFPYLNQPFDLFLQPQTL 1665 SA EPVYPGE FE+LAS FLP D +E F+GE S QFP+L++PF+L Q +L Sbjct: 1268 DHSACAIEPVYPGESFESLASLFLPPTDAESKETYFRGEMSNQFPHLDKPFELGAQTSSL 1327 Query: 1664 IAAQHHGQKDSTLLPASIPKRLRFRRNSTPYVISPKDQLLGELLFISLCKAYNRHPSSVE 1485 +A H+ + D TLLPASI KRLRFR + PYVI+P+D++LG LL+ + C+AY+R P VE Sbjct: 1328 LAPLHNSKHDPTLLPASIGKRLRFRHSEAPYVIAPRDEILGSLLYEAWCRAYHRSPRDVE 1387 Query: 1484 PFDEALFADCINLNEFAQLSSKTQTTIMANASRSDPDWRWSAVRIFSKSQHKTNEASIFG 1305 PFD L+A+CINLNEFAQLSSKTQ TIMANA+RSDPDWRWSAVRIF+K+QHK NE S+FG Sbjct: 1388 PFDPDLYAECINLNEFAQLSSKTQATIMANANRSDPDWRWSAVRIFAKTQHKVNEGSLFG 1447 Query: 1304 SWKACQTLALMHDAVVLLLGPVKKYQRLFDNRDRPANIYVHASHTPFQMSDWCRENLSSC 1125 SWKACQTLALMHDAVVLLLGPVKKYQR FD RDRP+ +YVHA HTPF+M+DWCR +L+ Sbjct: 1448 SWKACQTLALMHDAVVLLLGPVKKYQRFFDQRDRPSTLYVHAGHTPFEMADWCRAHLTPA 1507 Query: 1124 EHVANDYTAFDQSQHGEAVVLEIKKMRRLSIPEPLIQLHAYLKTNVTTQFGPLTCMRLTG 945 +ANDYTAFDQSQHGEAVV E KM RLSIP L+ LH YLKTNV+TQFGPLTCMRLTG Sbjct: 1508 VKLANDYTAFDQSQHGEAVVFERYKMNRLSIPAELVDLHVYLKTNVSTQFGPLTCMRLTG 1567 Query: 944 EPGTYDDNTDYNLAVIHSQYLMASIPHMVSGDDSLIDRQPLPNPLWITIGPMLHLRFKLE 765 EPGTYDDNTDYN+AV+H +Y + S P MVSGDDSL+D +P W I PML L FK E Sbjct: 1568 EPGTYDDNTDYNIAVLHLEYAVGSTPLMVSGDDSLLDSEPPVRDQWSAIAPMLALTFKKE 1627 Query: 764 VTRYPLFCGYLVGPSGAVRSPITLFAKSLMALDDGSLDDKLASYLTEFSVGHSLGQEMWN 585 RY FCGY VG +GAVRSP LFAK ++A+DDGS+ DKL +YLTEF+VGHS G W Sbjct: 1628 RGRYATFCGYYVGFTGAVRSPPALFAKLMIAVDDGSISDKLIAYLTEFTVGHSSGDAFWT 1687 Query: 584 LIPVEQVHYQAALFDFFCRKASREQKLVLKIGEVPDTIISTILSSARAIARPLYAYLSSS 405 ++PVE V YQ+A FDFFCR+A + K++L++GE P++++S + + +YA ++SS Sbjct: 1688 ILPVEAVPYQSACFDFFCRRAPAQAKVMLRLGEAPESLLSLAFEGLKWASHSVYALMNSS 1747 Query: 404 ARKLLLKGSKTYR--PFDTEESLQFEGVLQH 318 R+ LL S+ R P D E S Q +G L H Sbjct: 1748 HRRQLLHSSRRPRSLPEDPEVS-QLQGELLH 1777 Score = 440 bits (1132), Expect = e-120 Identities = 248/557 (44%), Positives = 315/557 (56%), Gaps = 6/557 (1%) Frame = -1 Query: 5948 ESLSNTIHRDTVTSPLVEAVADPLRDSLEKYPYAVSPSLTSFLSKRGINISGYGAKTHPH 5769 ESL+ T HRDT+T+P+VE++A PLR SLE+YP+++ SFL G++ISG+G HPH Sbjct: 15 ESLTPTTHRDTITAPIVESLATPLRRSLERYPWSIPKEFHSFLHTCGVDISGFGHAAHPH 74 Query: 5768 PAHKNIENYILQDVWPNLIRNQSSVLFMKPSKFRKLEQKDSNFHELINYRLTPQDTTRYP 5589 P HK IE ++L DVWPN R S V+F+KP KF KL+ + NF LINYRL P+DTTRYP Sbjct: 75 PVHKTIETHLLLDVWPNYARGPSDVMFIKPEKFAKLQSRQPNFAHLINYRLVPKDTTRYP 134 Query: 5588 SSSTTLPAHSTVFMHDALMYYTPGDIADLFLSAPHLTQLYATLVVPPESSFTDTSFFPEL 5409 S+ST LP TVFMHDALMYYTPG IADLF P L ++YA++VVP ESSFT S PE+ Sbjct: 135 STSTNLPDCETVFMHDALMYYTPGQIADLFFLCPQLQKIYASVVVPAESSFTHLSLHPEI 194 Query: 5408 YNFHFHDTDLVYELEGNPSHHYIQPKSALDWLRTSTIRCSDLTLSISILESIGPVHHLLI 5229 Y F F +DLVYE EGNP+ +Y QP+SALDWL+T+ S+++L+S GPVH LLI Sbjct: 195 YRFRFQGSDLVYEPEGNPAANYTQPRSALDWLQTTGFTVGHEFFSVTLLDSFGPVHSLLI 254 Query: 5228 QRGLAPKHRENTTRDFDTPDCFLLPAPTSLSQNVRDRLVPLAAYHSLRAYVMAVRTLRTT 5049 QRG P + F PD LPAP SL Q++R RLVP Y +L YV AVR LR T Sbjct: 255 QRGRPPVFQAEDIASFRVPDAVALPAPASLHQDLRHRLVPRKVYDALFNYVRAVR-LRVT 313 Query: 5048 DPAGFVRTQSTKPEFAWVTAEAWDSLQNFALLTCNQRPAVSYLTFASSFARIKHWXXXXX 4869 DPAGFVRTQ KPE++WVT+ AWD+LQ+FAL T RP S+ F S FAR+ HW Sbjct: 314 DPAGFVRTQVGKPEYSWVTSSAWDNLQHFALQTAAVRPNTSHPLFQSPFARLSHWLRTHT 373 Query: 4868 XXXXXXXXXXXXAVSFTTVKVAHYCSTRQIDSLILFGKQIVR----PSCPLNSPFSLHQY 4701 ++ T D L LFG I+ P P + P + Sbjct: 374 WALWCLASPSASVSAWATASALGRLLPLHTDRLRLFGFDIIGRRFWPRLPFHGPEPRFLW 433 Query: 4700 FSRTAQLPPSLSTQLPRFELVTSPRIITKWSPCLARFLLSTPFFRTLTTQLNFLSKKCFF 4521 + A PP L FE + + SP +PF+ L + S + Sbjct: 434 ETHPACRPPVLFAD-SAFECQILAGLANRCSP--------SPFWSRLFPTASPPSWVAYS 484 Query: 4520 AKGFPHSRKLXXXXXXXXXILWAYRRFMGPDAPQAMFDQYNGYFNPKPWKLRIAQGPTKC 4341 A A R F GPD+PQA+ DQY+ F+P PW L + + + Sbjct: 485 ALAL----------AAVPLAALALRWFYGPDSPQALHDQYHATFHPDPWTLDLPRRLRRF 534 Query: 4340 SRGQFL--PFCPRPHSL 4296 R F+ P P SL Sbjct: 535 ERESFMRTGSAPLPQSL 551 >ref|YP_004464920.1| polyprotein [Switchgrass mosaic virus] gi|332672309|gb|AEE25899.3| polyprotein [Switchgrass mosaic virus] Length = 2061 Score = 1069 bits (2764), Expect = 0.0 Identities = 575/1171 (49%), Positives = 747/1171 (63%), Gaps = 8/1171 (0%) Frame = -1 Query: 3806 TVNVAIPDDTTPERST--LILDPSGFGEVSTFAQLYPDDYVLGCAEFFCRKRHHGVSTAP 3633 TV IP PE + L +DP+ G + F L P Y+ F R R+ ST Sbjct: 687 TVFAQIPTPREPESALARLEVDPTASGPIMEFRDLQPGLYLGTTGSFLTRARNSVSSTIQ 746 Query: 3632 FPTMP-CLLDAVGSCLGVTPAELWSTLCHHLPDSLLQNPQITSCGLSTDHLTALSHFYQF 3456 +P CLL AV + + A LW+ L +LPDS+L + + GL+TDH L+ + Sbjct: 747 YPARAACLLVAVRNATSLPTATLWAALAANLPDSILDDGSLVRLGLTTDHFAVLARIFSL 806 Query: 3455 KAFVTSDQEPIPHPYGVDSAPTTIRFSHTTGNPGHFFITSDPGAPPPPKXXXXXXXXXXX 3276 + SD I GV A + HT PGHF + +D + P Sbjct: 807 RCRFVSDH--IDVELGVADATSRFTIRHT---PGHFELVADDYSLPALVGASTIPGADLA 861 Query: 3275 XXXLTTFRLNGELLPFQTVHNYRANVKRAKNLISNMKNGFDGVMATVDPQHPNSAKEKFV 3096 + +LPF+ VH +R +VKRAKNLISNMKNGFDGVMA +P P SA+E+F+ Sbjct: 862 ESCKRFVASDRTVLPFRDVHIHRTSVKRAKNLISNMKNGFDGVMAQANPLDPKSARERFL 921 Query: 3095 TTDGILDIAKSRSIKLIHIAGFPGCGKSYPIQRLLLTAPRARNFRISVPTAELRHEWKAS 2916 D LDIA R ++LIHIAGF GCGKS+P+ +LL T P R F+++VPT ELR EWK Sbjct: 922 MLDSCLDIAAPRVVRLIHIAGFAGCGKSWPVAQLLKT-PAFRTFKLAVPTTELRDEWKGL 980 Query: 2915 MDLEPKNNWRIGTWEXXXXXXXXXLVVDEIYKMPRGYLDLAILMDPHLEMVIVLGDPLQG 2736 M+ ++ WR GTWE LV+DE+YKMPRGYLDLAI D ++ VI+LGDP+QG Sbjct: 981 MEPRDQDKWRFGTWESSLLKSARTLVIDEVYKMPRGYLDLAIHADASIQFVILLGDPIQG 1040 Query: 2735 EYHSTHPQSSNHKLSSEINHLRPYLDFYCAWTRRCPKLIADFFGVPTTSQEPGFCRPVNH 2556 EYHSTHP SSN +LS E +LRPY+DFYC W+RR P+ +A GVP+TS+ G+ R + Sbjct: 1041 EYHSTHPSSSNARLSPEHVYLRPYIDFYCFWSRRIPQYVATILGVPSTSKVSGYARHSSQ 1100 Query: 2555 LPMNCPILTNSHSAALTLTEAHSRACTISASQGSTYSSPVVIHLDRHSSQLSNSMALVAL 2376 P+N IL ++ ++A +L + +A TI++SQGST + PV IHLD H+ +LS+ +LVA+ Sbjct: 1101 FPLNGKILISAMTSAKSLVDCGYQAITIASSQGSTVNGPVHIHLDNHARRLSHQHSLVAI 1160 Query: 2375 TRSTKGVLFSGDQSILQPGPHSAKLFSQLTQFQSSHSPDDRYPIQTHFIEQLRGVTLIST 2196 TRS G++F+GD S+ S LFS + +PI +L S Sbjct: 1161 TRSRAGLVFTGDPSVADGTSSSNLLFSAVLM---------NHPISVR--------SLFSA 1203 Query: 2195 PLKSRKLVGACPSEVKHSSTVRDFTHHAIRGSTVRDPSYQPSLAHVVRHTSPAIYHSELN 2016 L V + P+ R +R Y ++P + E Sbjct: 1204 LLPRCPFVESPPTS---------------RSVLLRGAGYG---------SAPPLRPRESP 1239 Query: 2015 RLHPDFKGDAVRS-AVIVCGDGIDHLPRVSPHFIAETRLPYHSDMPSAMPSQCSLSP--P 1845 + PDF+GD + + GDG + P+VS HF+ E+R P H D+PSA Q + P P Sbjct: 1240 PMRPDFQGDVIADLSAPFLGDGSSNAPQVSTHFLPESRRPLHFDVPSAR-HQVADHPLKP 1298 Query: 1844 TFSAPVFEPVYPGEDFETLASTFLPAHDPHLREIIFKGERSAQFPYLNQPFDLFLQPQTL 1665 SA EPVYPGE FE LA+ FLP D +EI F+GE S QFP+L++PF++ QP +L Sbjct: 1299 DHSACAIEPVYPGESFEQLAALFLPPTDAESKEIRFRGELSNQFPHLDKPFEISAQPSSL 1358 Query: 1664 IAAQHHGQKDSTLLPASIPKRLRFRRNSTPYVISPKDQLLGELLFISLCKAYNRHPSSVE 1485 +A H+ + D TLLPASI KRLRFR N + Y IS +D++LG LL+ + C+AY R P +E Sbjct: 1359 LAPVHNSKHDPTLLPASIAKRLRFRHNDSAYTISARDEILGGLLYEAWCRAYRRSPLDIE 1418 Query: 1484 PFDEALFADCINLNEFAQLSSKTQTTIMANASRSDPDWRWSAVRIFSKSQHKTNEASIFG 1305 PFD L+A+CINLNEFAQLSSKTQ TIMANA+RSDPDWRWSAVRIF+K+QHK NE S+FG Sbjct: 1419 PFDPVLYAECINLNEFAQLSSKTQATIMANANRSDPDWRWSAVRIFAKTQHKVNEGSLFG 1478 Query: 1304 SWKACQTLALMHDAVVLLLGPVKKYQRLFDNRDRPANIYVHASHTPFQMSDWCRENLSSC 1125 SWKACQTLALMHDAVVLLLGPVKKYQR+FD RDRP+++YVHA HTPF+M++WC+++L+ Sbjct: 1479 SWKACQTLALMHDAVVLLLGPVKKYQRVFDQRDRPSHLYVHAGHTPFEMAEWCQQHLTPA 1538 Query: 1124 EHVANDYTAFDQSQHGEAVVLEIKKMRRLSIPEPLIQLHAYLKTNVTTQFGPLTCMRLTG 945 +ANDYTAFDQSQHGEAVV E KM RLSIP+ LI LH YLKTNV+TQFGPLTCMRLTG Sbjct: 1539 IKLANDYTAFDQSQHGEAVVFERFKMSRLSIPQELIDLHVYLKTNVSTQFGPLTCMRLTG 1598 Query: 944 EPGTYDDNTDYNLAVIHSQYLMASIPHMVSGDDSLIDRQPLPNPLWITIGPMLHLRFKLE 765 EPGTYDDNTDYN+AV+H +Y + S P MVSGDDSL+D +P W + PML L FK E Sbjct: 1599 EPGTYDDNTDYNIAVLHLEYAVGSTPLMVSGDDSLLDSEPPVRDQWAAVEPMLALTFKKE 1658 Query: 764 VTRYPLFCGYLVGPSGAVRSPITLFAKSLMALDDGSLDDKLASYLTEFSVGHSLGQEMWN 585 RY FCGY VG +GAVRSP LFAK ++A+DD S+DDKL +YLTEF+VGHSLG W Sbjct: 1659 RGRYATFCGYYVGFTGAVRSPPALFAKLMIAVDDESIDDKLIAYLTEFTVGHSLGDAFWT 1718 Query: 584 LIPVEQVHYQAALFDFFCRKASREQKLVLKIGEVPDTIISTILSSARAIARPLYAYLSSS 405 ++PVE V YQ+A FDFFCR+A + K++L++GE P++++S + + +YA ++SS Sbjct: 1719 ILPVETVPYQSACFDFFCRRAPAQAKVMLRLGEAPESLLSMAFQGLKWASHSVYALMNSS 1778 Query: 404 ARKLLLKGSKTYR--PFDTEESLQFEGVLQH 318 R+ LL S+ R P D E S Q +G L H Sbjct: 1779 HRRQLLHSSRRPRSLPEDPEVS-QLQGELLH 1808 Score = 428 bits (1101), Expect = e-116 Identities = 240/548 (43%), Positives = 310/548 (56%), Gaps = 6/548 (1%) Frame = -1 Query: 5948 ESLSNTIHRDTVTSPLVEAVADPLRDSLEKYPYAVSPSLTSFLSKRGINISGYGAKTHPH 5769 ESL+ T HRDT+T+P+VE++A PLR SLE+YP+++ FL GI+ISG+G HPH Sbjct: 15 ESLTPTTHRDTITAPIVESLATPLRRSLERYPWSIPKEFHPFLHTCGIDISGFGHAAHPH 74 Query: 5768 PAHKNIENYILQDVWPNLIRNQSSVLFMKPSKFRKLEQKDSNFHELINYRLTPQDTTRYP 5589 P HK IE ++L DVWPN R S V+F+KP KF KL+ + +NF LINYRL P+DTTRYP Sbjct: 75 PVHKTIETHLLMDVWPNYARGPSDVMFIKPEKFAKLQTRQANFSHLINYRLVPKDTTRYP 134 Query: 5588 SSSTTLPAHSTVFMHDALMYYTPGDIADLFLSAPHLTQLYATLVVPPESSFTDTSFFPEL 5409 ++ST LP TVFMHDALMYY+PG IADLF P L +LYA+LVVP ESSFT S PEL Sbjct: 135 TTSTDLPDCETVFMHDALMYYSPGQIADLFHQCPQLQKLYASLVVPAESSFTHLSLHPEL 194 Query: 5408 YNFHFHDTDLVYELEGNPSHHYIQPKSALDWLRTSTIRCSDLTLSISILESIGPVHHLLI 5229 Y F F DLVYE EGNP+ +Y QP+ AL+WL+T+ ++++L+S GPVH LLI Sbjct: 195 YRFRFQGDDLVYEPEGNPAANYTQPRRALEWLQTTGFTSGHEFFTVTLLDSFGPVHSLLI 254 Query: 5228 QRGLAPKHRENTTRDFDTPDCFLLPAPTSLSQNVRDRLVPLAAYHSLRAYVMAVRTLRTT 5049 QRG P + F PD LPAP SL Q++R RLVP Y +L YV AVRTLR T Sbjct: 255 QRGRPPVFSAEDSVSFRVPDAIALPAPASLHQDLRHRLVPRRVYDALFNYVRAVRTLRVT 314 Query: 5048 DPAGFVRTQSTKPEFAWVTAEAWDSLQNFALLTCNQRPAVSYLTFASSFARIKHWXXXXX 4869 DPA FVRTQ +KPE++WVT+ AWD+LQ+FAL T RP S+ F S AR+ HW Sbjct: 315 DPADFVRTQVSKPEYSWVTSSAWDNLQHFALQTAAVRPNTSHPLFQSPLARVAHWLRTHT 374 Query: 4868 XXXXXXXXXXXXAVSFTTVKVAHYCSTRQIDSLILFGKQIVR----PSCPLNSPFSLHQY 4701 ++ + D L LFG ++ P P SP + + Sbjct: 375 WALWCLASPAASLTAWLAASRFGRLTVLHTDRLRLFGCDLIGRRFWPILPFQSPEARFLW 434 Query: 4700 FSRTAQLPPSLSTQLPRFELVTSPRIITKWSPCLARFLLSTPFFRTLTTQLNFLSKKCFF 4521 + +A P +L FE + + SP +P L F Sbjct: 435 ETHSACKPYTLFAG-SAFECRVLGALAHRCSP--------SPTLSRL------------F 473 Query: 4520 AKGFPHSRKLXXXXXXXXXILWA--YRRFMGPDAPQAMFDQYNGYFNPKPWKLRIAQGPT 4347 + P + L A R F+GPD+PQA+ DQY+ F+P W L + + Sbjct: 474 PEAQPARWVVFGSLALAAVPLTALLVRWFLGPDSPQALHDQYHATFHPDSWSLDLPRRLR 533 Query: 4346 KCSRGQFL 4323 C R FL Sbjct: 534 SCVREPFL 541 >gb|ACV83739.1| replicase-associated polyprotein [Grapevine virus Q] Length = 2081 Score = 1055 bits (2728), Expect = 0.0 Identities = 569/1199 (47%), Positives = 741/1199 (61%), Gaps = 26/1199 (2%) Frame = -1 Query: 3788 PDDTTPERSTLILDPSGFGEVSTFAQLYPDDYVLGCAEFFCRKRHHGVSTAPFPTMPCLL 3609 P PE S L D S GEVS F L+P D++ A F R+R +S A +P M CLL Sbjct: 741 PGLVEPEHSPLAADSSATGEVSEFFNLHPADWIAPTATFLARRRGETISGAKYPAMDCLL 800 Query: 3608 DAVGSCLGVTPAELWSTLCHHLPDSLLQNPQITSCGLSTDHLTALSHFYQFKAFVTSDQE 3429 AV + + LW T+C + PDS+L+ I GLST H AL+ ++ +A S Sbjct: 801 AAVSAGANIPKDALWKTICSYFPDSMLREEDIAKHGLSTHHFAALAREHRLQATFHSAGN 860 Query: 3428 PIPHPYGVDSAPTTIRFSHTTGN---PGHFFITSDPGAPPPPKXXXXXXXXXXXXXXLTT 3258 GV+ + HT + PGHF + +D P Sbjct: 861 QFV--LGVEHPSVSFHIDHTPESATAPGHFSLRADERQHSP---RLLGGRAADLVHAALK 915 Query: 3257 FRLNGELLPFQTVHNYRANVKRAKNLISNMKNGFDGVMATVDPQHPNSAKEKFVTTDGIL 3078 F++ +LPFQ H+Y NV RAKNLISNMKNGFDGV+A +DP H N ++++ ++ DG + Sbjct: 916 FKVGSAVLPFQQAHDYTTNVARAKNLISNMKNGFDGVLANIDPAHTNESRDRLLSLDGAM 975 Query: 3077 DIAKSRSIKLIHIAGFPGCGKSYPIQRLLLTAPRARNFRISVPTAELRHEWKASMDLEPK 2898 DIA R +KLIHIAGFPGCGKSYPI +LL + ++F+I+VPT ELR+EWK + ++P+ Sbjct: 976 DIAAPRDVKLIHIAGFPGCGKSYPIAQLLKSRA-FKHFKIAVPTVELRNEWKGVLKVKPQ 1034 Query: 2897 NNWRIGTWEXXXXXXXXXLVVDEIYKMPRGYLDLAILMDPHLEMVIVLGDPLQGEYHSTH 2718 +NWRI TWE LV+DEIYKMPRGYLDLAI DP +++VI LGDPLQG YHSTH Sbjct: 1035 DNWRISTWESSLLKSARILVIDEIYKMPRGYLDLAIHADPTIDLVIALGDPLQGVYHSTH 1094 Query: 2717 PQSSNHKLSSEINHLRPYLDFYCAWTRRCPKLIADFFGVPTTSQEPGFCRPVNHLPMNCP 2538 SSNH+LSSE+ HL+PY+D+YC W+ R P+ I FFG+ +TS PGF ++P N Sbjct: 1095 SDSSNHRLSSEVKHLQPYMDYYCLWSHRVPQDIGTFFGIKSTSTVPGFKSYQANIPGNLR 1154 Query: 2537 ILTNSHSAALTLTEAHSRACTISASQGSTYSSPVVIHLDRHSSQLSNSMALVALTRSTKG 2358 L NS SAA L + + TI++SQGSTYS+P IHLDRHS LS++ +LVALTRS G Sbjct: 1155 QLANSQSAAKVLNQCGFSSVTIASSQGSTYSAPACIHLDRHSMSLSHAHSLVALTRSKSG 1214 Query: 2357 VLFSGDQSILQPGPHSAKLFSQLTQFQSSHSPDDRYPIQTHFIEQLRGVTLISTPLKSRK 2178 V+F+GD+ +L+ P LFS S+ + + ++ F + ++ PLK R Sbjct: 1215 VIFTGDKRVLE-APGGNLLFS-------SYFQEKKVDLRALFPTEFPCRPILLEPLKRRP 1266 Query: 2177 LVGACPSEVKHSSTVRDFTHHAIRGSTVRDPSYQPSLAHVVRHTSPAIYHSELNRLHPDF 1998 D T A P + E +P+ Sbjct: 1267 T---------------DLTGGA-----------------------PFPFRDEARVFNPER 1288 Query: 1997 KGDAVRSAVIVCGDGIDHLPRVSPHFIAETRLPYHSDMPSAMPSQCSLSPPTFSAPVF-E 1821 + D A +VCGDG + P+VS HF+ ETR P H D+PSA P + P F E Sbjct: 1289 RDDVFVEAAVVCGDGSSNAPQVSTHFLPETRRPLHFDLPSAKPEFAAHEAPAPLTDTFIE 1348 Query: 1820 PVYPGEDFETLASTFLPAHDPHLREIIFKGERSAQFPYLNQPFDLFLQPQTLIAAQHHGQ 1641 PVYPGE FE +A+ FLPAHDP ++EI+FK +RS QFP+++QPF + QP +L AA HH + Sbjct: 1349 PVYPGETFENIAAHFLPAHDPEVKEILFKDQRSNQFPFIDQPFHVGAQPASLCAAVHHSK 1408 Query: 1640 KDSTLLPASIPKRLRFRRNSTPYVISPKDQLLGELLFISLCKAYNRHPSSVEPFDEALFA 1461 KD TLL ASI KRLRFR + PY I+ KD++LG +LF + C+A R P+ PFDEALFA Sbjct: 1409 KDPTLLAASIEKRLRFRASDAPYQITAKDEILGSILFEAHCRAMRRDPNVRVPFDEALFA 1468 Query: 1460 DCINLNEFAQLSSKTQTTIMANASRSDPDWRWSAVRIFSKSQHKTNEASIFGSWKACQTL 1281 +CI LNEFAQL+SKTQ IMAN RSDPDWR++AVRIF+K+QHK N S+FG WKACQTL Sbjct: 1469 ECIALNEFAQLTSKTQAVIMANHERSDPDWRYTAVRIFAKNQHKVNSGSLFGPWKACQTL 1528 Query: 1280 ALMHDAVVLLLGPVKKYQRLFDNRDRPANIYVHASHTPFQMSDWCR-------------- 1143 ALMHDAV+LL GPVKKYQ + D RDRP +I+++A TP +MS+WC+ Sbjct: 1529 ALMHDAVILLFGPVKKYQLIHDERDRPEHIFIYAGRTPQEMSEWCQKFLTPRSASSPVPV 1588 Query: 1142 -----ENLSSC--EHVANDYTAFDQSQHGEAVVLEIKKMRRLSIPEPLIQLHAYLKTNVT 984 ++L C VANDYTAFDQSQHGEA VLE KM R++IPE LI LH +KT++T Sbjct: 1589 MVSGDDSLIGCHPHFVANDYTAFDQSQHGEAAVLERLKMERVNIPEWLITLHIMIKTHIT 1648 Query: 983 TQFGPLTCMRLTGEPGTYDDNTDYNLAVIHSQYLMASIPHMVSGDDSLIDRQPLPNPLWI 804 TQFGPLTCMRLTGEPGTY DN+DYNLAVI +Y M+ + NPLW Sbjct: 1649 TQFGPLTCMRLTGEPGTYFDNSDYNLAVIFLEYSMSG-------------QWLSENPLWP 1695 Query: 803 TIGPMLHLRFKLEVTRYPLFCGYLVGPSGAVRSPITLFAKSLMALDDGSLDDKLASYLTE 624 I P+L LRFK E TRY FCGY VG +GAVR P LFAK L+A++D S+ DK+ASY TE Sbjct: 1696 AIKPLLALRFKKEKTRYGNFCGYYVGAAGAVRMPRALFAKILIAVEDASIADKMASYATE 1755 Query: 623 FSVGHSLGQEMWNLIPVEQVHYQAALFDFFCRKASREQKLVLKIGEVPDTIISTILSSAR 444 F++GHSLG +W+L+PVE+V YQ+A+FDFFCR A RE KL+ K+G V +++ + A Sbjct: 1756 FAIGHSLGDALWSLLPVEEVVYQSAVFDFFCRNAPRELKLLFKLGPVERSVVEAVQEFAT 1815 Query: 443 AIARPLYAYLSSSARKLLL-KGSKTYRPFDTEESLQFEGVLQHAVSIATPPPRLTGGSL 270 + Y +L+S+ RK+LL + + + P D E Q +G L + S+ P LTGG L Sbjct: 1816 WASYAFYRFLNSAQRKVLLTRSPQLHFPGDAPEVSQLQGELLQSFSMMQPTFPLTGGLL 1874 Score = 402 bits (1032), Expect = e-108 Identities = 232/556 (41%), Positives = 314/556 (56%), Gaps = 4/556 (0%) Frame = -1 Query: 5954 LFESLSNTIHRDTVTSPLVEAVADPLRDSLEKYPYAVSPSLTSFLSKRGINISGYGAKTH 5775 L E L+ T HRDTV SP++EAVA PLR S+++YPY V L + GI SG+G K H Sbjct: 84 LVEMLAPTTHRDTVASPILEAVAGPLRTSIQRYPYEVPAHAVPVLQRFGIEASGFGFKAH 143 Query: 5774 PHPAHKNIENYILQDVWPNLIRNQSSVLFMKPSKFRKLEQKDSNFHELINYRLTPQDTTR 5595 PHP HK IE ++L + W NL R+ S+VLFMK SKF KL+ +++NF L NY LT +DTTR Sbjct: 144 PHPVHKTIEIHLLFEHWLNLCRSPSAVLFMKQSKFEKLQHENANFEALANYNLTARDTTR 203 Query: 5594 YPSSSTTLPAHSTVFMHDALMYYTPGDIADLFLSAPHLTQLYATLVVPPESSFTDTSFFP 5415 Y + P + FMHDAL Y++ +A F PHL +L+A+LVVPPES FT+ S FP Sbjct: 204 YEQVAVAPPTQAVWFMHDALQYFSLSQVAAFFADCPHLEKLFASLVVPPESDFTNLSLFP 263 Query: 5414 ELYNFHFHDTDLVYELEGNPSHHYIQPKSALDWLRTSTIRCSDLTLSISILESIGPVHHL 5235 E+Y + F + L Y+LEGNP H Y QP+ AL+WL+T+TIRC +L L+++ LES GPVH L Sbjct: 264 EIYRYSFAGSRLNYQLEGNPGHSYSQPREALEWLKTTTIRCGNLYLTVTKLESWGPVHSL 323 Query: 5234 LIQRGLAPKHRENTTRDFDTPDCFLLPAPTSLSQNVRDRLVPLAAYHSLRAYVMAVRTLR 5055 LIQRG H E+ F PD LP +L Q++R RLVP Y +L YV AVRTLR Sbjct: 324 LIQRGKPSVHLEHDEVSFVGPDAVALPEAAALRQDLRHRLVPRTVYDALFVYVRAVRTLR 383 Query: 5054 TTDPAGFVRTQSTKPEFAWVTAEAWDSLQNFALLTCNQRPAVSYLTFASSFARIKHWXXX 4875 TTDP GFVRTQS K E++WVT+ AWD+LQ+F T R + F S+FA+ ++W Sbjct: 384 TTDPVGFVRTQSNKAEYSWVTSAAWDNLQHFVTETAAHRVPNRHFFFNSTFAKCRYWCSQ 443 Query: 4874 XXXXXXXXXXXXXXAVS-FTTVKVAHYCSTRQIDSLILFGKQIVRPSCPLNSPFSLHQYF 4698 ++ FT K+A S+R + +L +F +V P +P + Sbjct: 444 HKLGLLTVTTPPACGLTLFTGAKLASAMSSR-LTALAVFHHWVVPPPTLFFTPKA----- 497 Query: 4697 SRTAQLPPSLSTQLPRFELVTSPRIITKWSPCLARFLLSTPFFRTLTTQLNFLS--KKCF 4524 P L+ QL R P+ + P L P + LNF S ++ F Sbjct: 498 -------PLLAIQLTRL-----PQPLFSSVP-----FLHKPLGKLSLRLLNFDSFLRRFF 540 Query: 4523 FAKGFPHSRKLXXXXXXXXXILW-AYRRFMGPDAPQAMFDQYNGYFNPKPWKLRIAQGPT 4347 P +L +W A R F+GPDAPQA+ D Y +F+P W+L + P Sbjct: 541 PDAPIPTWARLLTVAIALSPAVWLAIRHFIGPDAPQALNDHYVRFFHPDRWQLTFERQPR 600 Query: 4346 KCSRGQFLPFCPRPHS 4299 + + P+ P P + Sbjct: 601 FVALDRTFPW-PLPQA 615 >ref|YP_002756536.1| putative 230 kDa polyprotein [Grapevine Syrah virus 1] gi|225691150|gb|ACO06249.1| putative 230 kDa polyprotein [Grapevine Syrah virus 1] Length = 2081 Score = 1053 bits (2723), Expect = 0.0 Identities = 567/1199 (47%), Positives = 739/1199 (61%), Gaps = 26/1199 (2%) Frame = -1 Query: 3788 PDDTTPERSTLILDPSGFGEVSTFAQLYPDDYVLGCAEFFCRKRHHGVSTAPFPTMPCLL 3609 P PE S L D S GEVS F L+P D++ A F R+R +S A +P M CLL Sbjct: 741 PGLVEPEHSPLAADSSATGEVSEFFNLHPADWIAPTATFLARRRGETISGAKYPAMDCLL 800 Query: 3608 DAVGSCLGVTPAELWSTLCHHLPDSLLQNPQITSCGLSTDHLTALSHFYQFKAFVTSDQE 3429 AV + + LW T+C + PDS+L+ I GLST H AL+ ++ +A S Sbjct: 801 AAVSAGANIPKDALWKTICSYFPDSMLREEDIAKHGLSTHHFAALAREHRLQATFHSAGN 860 Query: 3428 PIPHPYGVDSAPTTIRFSHTTGN---PGHFFITSDPGAPPPPKXXXXXXXXXXXXXXLTT 3258 GV+ + HT + PGHF + +D P Sbjct: 861 QFV--LGVEHPSVSFHIDHTPESATAPGHFSLRADERQHSP---RLLGGRAADLVHAALK 915 Query: 3257 FRLNGELLPFQTVHNYRANVKRAKNLISNMKNGFDGVMATVDPQHPNSAKEKFVTTDGIL 3078 F++ +LPFQ H+Y NV RAKNLISNMKNGFDGV+A +DP H N ++++ ++ DG + Sbjct: 916 FKVGSAVLPFQQAHDYTTNVARAKNLISNMKNGFDGVLANIDPAHTNESRDRLLSLDGAM 975 Query: 3077 DIAKSRSIKLIHIAGFPGCGKSYPIQRLLLTAPRARNFRISVPTAELRHEWKASMDLEPK 2898 DIA R +KLIHIAGFPGCGKSYPI +LL + ++F+I+VPT ELR+EWK + ++P+ Sbjct: 976 DIAAPRDVKLIHIAGFPGCGKSYPIAQLLKSRA-FKHFKIAVPTVELRNEWKGVLKVKPQ 1034 Query: 2897 NNWRIGTWEXXXXXXXXXLVVDEIYKMPRGYLDLAILMDPHLEMVIVLGDPLQGEYHSTH 2718 +NWRI TWE LV+DEIYKMPRGYLDLAI DP +++VI LGDPLQG YHSTH Sbjct: 1035 DNWRISTWESSLLKSARILVIDEIYKMPRGYLDLAIHADPTIDLVIALGDPLQGVYHSTH 1094 Query: 2717 PQSSNHKLSSEINHLRPYLDFYCAWTRRCPKLIADFFGVPTTSQEPGFCRPVNHLPMNCP 2538 SSNH+LSSE+ HL+PY+D+YC W+ R P+ I FFG+ +TS PGF ++P N Sbjct: 1095 SDSSNHRLSSEVKHLQPYMDYYCLWSHRVPQDIGTFFGIKSTSTVPGFKSYQANIPSNLR 1154 Query: 2537 ILTNSHSAALTLTEAHSRACTISASQGSTYSSPVVIHLDRHSSQLSNSMALVALTRSTKG 2358 L NS SAA L + + TI++SQGSTYS+P IHLDRHS LS++ +LVALTRS G Sbjct: 1155 QLANSQSAAKVLNQCGFSSVTIASSQGSTYSAPACIHLDRHSMSLSHAHSLVALTRSKSG 1214 Query: 2357 VLFSGDQSILQPGPHSAKLFSQLTQFQSSHSPDDRYPIQTHFIEQLRGVTLISTPLKSRK 2178 V+F+GD+ +L+ P LFS S+ + + ++ F + ++ PLK R Sbjct: 1215 VIFTGDKRVLE-APGGNLLFS-------SYFQEKKVDLRALFPTEFPCCPILLEPLKRRP 1266 Query: 2177 LVGACPSEVKHSSTVRDFTHHAIRGSTVRDPSYQPSLAHVVRHTSPAIYHSELNRLHPDF 1998 D T A P + E +P+ Sbjct: 1267 T---------------DLTGGA-----------------------PFPFRDEARVFNPER 1288 Query: 1997 KGDAVRSAVIVCGDGIDHLPRVSPHFIAETRLPYHSDMPSAMPSQCSLSPPTFSAPVF-E 1821 + D A +VCGDG + P+VS HF+ ETR P H D+PSA P + P F E Sbjct: 1289 RDDVFVEAAVVCGDGSSNAPQVSTHFLPETRRPLHFDLPSAKPEFAAHEAPAPLTDTFIE 1348 Query: 1820 PVYPGEDFETLASTFLPAHDPHLREIIFKGERSAQFPYLNQPFDLFLQPQTLIAAQHHGQ 1641 PVYPGE FE +A+ FLPAHDP ++EI+FK +RS QFP+++QPF + QP +L AA HH + Sbjct: 1349 PVYPGETFENIAAHFLPAHDPEVKEILFKDQRSNQFPFIDQPFHVGAQPASLCAAVHHSK 1408 Query: 1640 KDSTLLPASIPKRLRFRRNSTPYVISPKDQLLGELLFISLCKAYNRHPSSVEPFDEALFA 1461 KD TLL ASI KRLRFR + PY I+ KD++LG +LF + C+A R P+ PFDEALFA Sbjct: 1409 KDPTLLAASIEKRLRFRASDAPYQITAKDEILGSMLFEAHCRAMRRDPNVRVPFDEALFA 1468 Query: 1460 DCINLNEFAQLSSKTQTTIMANASRSDPDWRWSAVRIFSKSQHKTNEASIFGSWKACQTL 1281 +CI LNEFAQL+SKTQ IMAN RSDPDWR++AVRIF+K+QHK N S+FG WKACQTL Sbjct: 1469 ECIALNEFAQLTSKTQAVIMANHERSDPDWRYTAVRIFAKNQHKVNSGSLFGPWKACQTL 1528 Query: 1280 ALMHDAVVLLLGPVKKYQRLFDNRDRPANIYVHASHTPFQMSDWCR-------------- 1143 ALMHDAV+LL GPVKKYQ + D RDRP +I+++A TP +MS+WC+ Sbjct: 1529 ALMHDAVILLFGPVKKYQLIHDERDRPEHIFIYAGRTPQEMSEWCQKFLTPRSASSPVPV 1588 Query: 1142 -----ENLSSC--EHVANDYTAFDQSQHGEAVVLEIKKMRRLSIPEPLIQLHAYLKTNVT 984 ++L C VANDYTAFDQSQHGEA VLE KM R++IPE LI LH +KT++T Sbjct: 1589 MVSGDDSLIGCHPHFVANDYTAFDQSQHGEAAVLERLKMERVNIPEWLIALHIMIKTHIT 1648 Query: 983 TQFGPLTCMRLTGEPGTYDDNTDYNLAVIHSQYLMASIPHMVSGDDSLIDRQPLPNPLWI 804 TQFGPLTCMRLTGEPGTY DN+DYNLAVI +Y M+ + NPLW Sbjct: 1649 TQFGPLTCMRLTGEPGTYFDNSDYNLAVIFLEYSMSG-------------QWLSENPLWP 1695 Query: 803 TIGPMLHLRFKLEVTRYPLFCGYLVGPSGAVRSPITLFAKSLMALDDGSLDDKLASYLTE 624 I P+L LRFK E TRY FCGY VG +GAVR P LFAK +A++D S+ DK+ASY TE Sbjct: 1696 AIKPLLALRFKKEKTRYGNFCGYYVGAAGAVRMPRALFAKIFIAVEDASIADKMASYATE 1755 Query: 623 FSVGHSLGQEMWNLIPVEQVHYQAALFDFFCRKASREQKLVLKIGEVPDTIISTILSSAR 444 F++GHSLG +W+L+PVE+V YQ+A+FDF CR A RE KL+ K+G V +++ + A Sbjct: 1756 FAIGHSLGDALWSLLPVEEVVYQSAVFDFLCRNAPRELKLLFKLGPVERSVVEAVQEFAT 1815 Query: 443 AIARPLYAYLSSSARKLLL-KGSKTYRPFDTEESLQFEGVLQHAVSIATPPPRLTGGSL 270 + Y +L+S+ RK+LL + + + P D E Q +G L + S+ P LTGG L Sbjct: 1816 WASYAFYRFLNSAQRKVLLTRSPQLHFPGDAPEVSQLQGELLQSFSMMQPTLPLTGGLL 1874 Score = 403 bits (1035), Expect = e-109 Identities = 230/554 (41%), Positives = 311/554 (56%), Gaps = 2/554 (0%) Frame = -1 Query: 5954 LFESLSNTIHRDTVTSPLVEAVADPLRDSLEKYPYAVSPSLTSFLSKRGINISGYGAKTH 5775 L E L+ T HRDTV SP++EAVA PLR S+++YPY V L + GI SG+G K H Sbjct: 84 LVEMLAPTTHRDTVASPILEAVAGPLRTSIQRYPYEVPAHAVPVLQRFGIEASGFGFKAH 143 Query: 5774 PHPAHKNIENYILQDVWPNLIRNQSSVLFMKPSKFRKLEQKDSNFHELINYRLTPQDTTR 5595 PHP HK IE ++L + W NL R+ S+VLFMK SKF KL+ +++NF L NY LT +DTTR Sbjct: 144 PHPVHKTIEIHLLFEHWLNLCRSPSAVLFMKQSKFEKLQHENANFEALANYNLTARDTTR 203 Query: 5594 YPSSSTTLPAHSTVFMHDALMYYTPGDIADLFLSAPHLTQLYATLVVPPESSFTDTSFFP 5415 Y + P + FMHDAL Y++ +A F PHL +L+A+LVVPPES FT+ S FP Sbjct: 204 YEQVAVAPPTQAVWFMHDALQYFSLSQVAAFFADCPHLEKLFASLVVPPESDFTNLSLFP 263 Query: 5414 ELYNFHFHDTDLVYELEGNPSHHYIQPKSALDWLRTSTIRCSDLTLSISILESIGPVHHL 5235 E+Y + F + L Y+LEGNP H Y QP+ AL+WL+T+TIRC +L L+++ LES GPVH L Sbjct: 264 EIYRYSFAGSRLNYQLEGNPGHSYSQPREALEWLKTTTIRCGNLYLTVTKLESWGPVHSL 323 Query: 5234 LIQRGLAPKHRENTTRDFDTPDCFLLPAPTSLSQNVRDRLVPLAAYHSLRAYVMAVRTLR 5055 LIQRG H E+ F PD LP +L Q++R RLVP Y +L YV AVRTLR Sbjct: 324 LIQRGKPSVHLEHDEVSFVGPDAVALPEAAALRQDLRHRLVPRTVYDALFVYVRAVRTLR 383 Query: 5054 TTDPAGFVRTQSTKPEFAWVTAEAWDSLQNFALLTCNQRPAVSYLTFASSFARIKHWXXX 4875 TTDP GFVRTQS K E++WVT+ AWD+LQ+F T R + F S+FA+ ++W Sbjct: 384 TTDPVGFVRTQSNKAEYSWVTSAAWDNLQHFVTETAAHRVPNRHFFFNSTFAKCRYWCSQ 443 Query: 4874 XXXXXXXXXXXXXXAVS-FTTVKVAHYCSTRQIDSLILFGKQIVRPSCPLNSPFSLHQYF 4698 ++ FT K+A S+R + +L +F +V P +F Sbjct: 444 HKLGLLTVTTPPACGLTLFTGAKLASAMSSR-LTALAVFHHWVVPPPT---------LFF 493 Query: 4697 SRTAQLPPSLSTQLPRFELVTSPRIITKWSPCLARFLLSTPFFRTLTTQLNFLSKKCFFA 4518 + A L T+LP+ + P + R L PF R + F Sbjct: 494 TPKAPLLAIQLTRLPQPLFSSVPFLHKPLGKLSLRLLNRFPFLR-----------RFFPD 542 Query: 4517 KGFPHSRKLXXXXXXXXXILW-AYRRFMGPDAPQAMFDQYNGYFNPKPWKLRIAQGPTKC 4341 P +L +W A R F+GPDAPQA+ D Y +F+P W+L + P Sbjct: 543 APIPTWARLLTVAIALSPAVWLAIRHFIGPDAPQALNDHYVRFFHPDRWQLTFERQPRFV 602 Query: 4340 SRGQFLPFCPRPHS 4299 + + P+ P P + Sbjct: 603 ALDRTFPW-PLPQA 615 >gb|AFV34757.1| polyprotein [Grapevine Syrah virus 1] Length = 2081 Score = 1051 bits (2717), Expect = 0.0 Identities = 566/1197 (47%), Positives = 737/1197 (61%), Gaps = 26/1197 (2%) Frame = -1 Query: 3788 PDDTTPERSTLILDPSGFGEVSTFAQLYPDDYVLGCAEFFCRKRHHGVSTAPFPTMPCLL 3609 P PE S L D S GEVS F L+P D++ A F R+R +S A +P M CLL Sbjct: 741 PGLVEPEHSPLAADSSATGEVSEFFNLHPADWIAPTATFLARRRGETISGAKYPAMDCLL 800 Query: 3608 DAVGSCLGVTPAELWSTLCHHLPDSLLQNPQITSCGLSTDHLTALSHFYQFKAFVTSDQE 3429 AV + + LW T+C + PDS+L+ I GLST H AL+ ++ +A S Sbjct: 801 AAVSAGANIPKDALWKTICSYFPDSMLREEDIAKHGLSTHHFAALAREHRLQATFHSAGN 860 Query: 3428 PIPHPYGVDSAPTTIRFSHTTGN---PGHFFITSDPGAPPPPKXXXXXXXXXXXXXXLTT 3258 GV+ + HT + PGHF + +D P Sbjct: 861 QFV--LGVEHPSVSFHIDHTPESATAPGHFSLRADERQHSP---RLLGGRAADLVHAALK 915 Query: 3257 FRLNGELLPFQTVHNYRANVKRAKNLISNMKNGFDGVMATVDPQHPNSAKEKFVTTDGIL 3078 F++ +LPFQ H+Y NV RAKNLISNMKNGFDGV+A +DP H N ++++ ++ DG + Sbjct: 916 FKVGSAVLPFQQAHDYTTNVARAKNLISNMKNGFDGVLANIDPAHTNESRDRLLSLDGAM 975 Query: 3077 DIAKSRSIKLIHIAGFPGCGKSYPIQRLLLTAPRARNFRISVPTAELRHEWKASMDLEPK 2898 DIA R +KLIHIAGFPGCGKSYPI +LL + ++F+I+VPT ELR+EWK + ++P+ Sbjct: 976 DIAAPRDVKLIHIAGFPGCGKSYPIAQLLKSRA-FKHFKIAVPTVELRNEWKGVLKVKPQ 1034 Query: 2897 NNWRIGTWEXXXXXXXXXLVVDEIYKMPRGYLDLAILMDPHLEMVIVLGDPLQGEYHSTH 2718 +NWRI TWE LV+DEIYKMPRGYLDLAI DP +++VI LGDPLQG YHSTH Sbjct: 1035 DNWRISTWESSLLKSARILVIDEIYKMPRGYLDLAIHADPTIDLVIALGDPLQGVYHSTH 1094 Query: 2717 PQSSNHKLSSEINHLRPYLDFYCAWTRRCPKLIADFFGVPTTSQEPGFCRPVNHLPMNCP 2538 SSNH+LSSE+ HL+PY+D+YC W+ R P+ I FFG+ +TS PGF ++P N Sbjct: 1095 SDSSNHRLSSEVKHLQPYMDYYCLWSHRVPQDIGTFFGIKSTSTVPGFKSYQANIPSNLR 1154 Query: 2537 ILTNSHSAALTLTEAHSRACTISASQGSTYSSPVVIHLDRHSSQLSNSMALVALTRSTKG 2358 L NS SAA L + + TI++SQGSTYS+P IHLDRHS LS++ +LVALTRS G Sbjct: 1155 QLANSQSAAKVLNQCGFSSVTIASSQGSTYSAPACIHLDRHSMSLSHAHSLVALTRSKSG 1214 Query: 2357 VLFSGDQSILQPGPHSAKLFSQLTQFQSSHSPDDRYPIQTHFIEQLRGVTLISTPLKSRK 2178 V+F+GD+ +L+ P LFS S+ + + ++ F + ++ PLK R Sbjct: 1215 VIFTGDKRVLE-APGGNLLFS-------SYFQEKKVDLRALFPTEFPCCPILLEPLKRRP 1266 Query: 2177 LVGACPSEVKHSSTVRDFTHHAIRGSTVRDPSYQPSLAHVVRHTSPAIYHSELNRLHPDF 1998 D T A P + E +P+ Sbjct: 1267 T---------------DLTGGA-----------------------PFPFRDEARVFNPER 1288 Query: 1997 KGDAVRSAVIVCGDGIDHLPRVSPHFIAETRLPYHSDMPSAMPSQCSLSPPTFSAPVF-E 1821 + D A +VCGDG + P+VS HF+ ETR P H D+PSA P + P F E Sbjct: 1289 RDDVFVEAAVVCGDGSSNAPQVSTHFLPETRRPLHFDLPSAKPEFAAHEAPAPLTDTFIE 1348 Query: 1820 PVYPGEDFETLASTFLPAHDPHLREIIFKGERSAQFPYLNQPFDLFLQPQTLIAAQHHGQ 1641 PVYPGE FE +A+ FLPAHDP ++EI+FK +RS QFP+++QPF + QP +L AA HH + Sbjct: 1349 PVYPGETFENIAAHFLPAHDPEVKEILFKDQRSNQFPFIDQPFHVGAQPASLCAAVHHSK 1408 Query: 1640 KDSTLLPASIPKRLRFRRNSTPYVISPKDQLLGELLFISLCKAYNRHPSSVEPFDEALFA 1461 KD TLL ASI KRLRFR + PY I+ KD++LG +LF + C+A R P+ PFDEALFA Sbjct: 1409 KDPTLLAASIEKRLRFRASDAPYQITAKDEILGSMLFEAHCRAMRRDPNVRVPFDEALFA 1468 Query: 1460 DCINLNEFAQLSSKTQTTIMANASRSDPDWRWSAVRIFSKSQHKTNEASIFGSWKACQTL 1281 +CI LNEFAQL+SKTQ IMAN RSDPDWR +AVRIF+K+QHK N S+FG WKACQTL Sbjct: 1469 ECIALNEFAQLTSKTQAVIMANHERSDPDWRHTAVRIFAKNQHKVNSGSLFGPWKACQTL 1528 Query: 1280 ALMHDAVVLLLGPVKKYQRLFDNRDRPANIYVHASHTPFQMSDWCR-------------- 1143 ALMHDAV+LL GPVKKYQ + D RDRP +I+++A TP +MS+WC+ Sbjct: 1529 ALMHDAVILLFGPVKKYQLIHDERDRPEHIFIYAGRTPQEMSEWCQKFLTPRSASSPVPV 1588 Query: 1142 -----ENLSSC--EHVANDYTAFDQSQHGEAVVLEIKKMRRLSIPEPLIQLHAYLKTNVT 984 ++L C VANDYTAFDQSQHGEA VLE KM R++IPE LI LH +KT++T Sbjct: 1589 MVSGDDSLIGCHPHFVANDYTAFDQSQHGEAAVLERLKMERVNIPEWLIALHIMIKTHIT 1648 Query: 983 TQFGPLTCMRLTGEPGTYDDNTDYNLAVIHSQYLMASIPHMVSGDDSLIDRQPLPNPLWI 804 TQFGPLTCMRLTGEPGTY DN+DYNLAVI +Y M+ + NPLW Sbjct: 1649 TQFGPLTCMRLTGEPGTYFDNSDYNLAVIFLEYSMSG-------------QWLSENPLWP 1695 Query: 803 TIGPMLHLRFKLEVTRYPLFCGYLVGPSGAVRSPITLFAKSLMALDDGSLDDKLASYLTE 624 I P+L LRFK E TRY FCGY VG +GAVR P LFAK +A++D S+ DK+ASY TE Sbjct: 1696 AIKPLLALRFKKEKTRYGNFCGYYVGAAGAVRMPRALFAKIFIAVEDASIADKMASYATE 1755 Query: 623 FSVGHSLGQEMWNLIPVEQVHYQAALFDFFCRKASREQKLVLKIGEVPDTIISTILSSAR 444 F++GHSLG +W+L+PVE+V YQ+A+FDF CR A RE KL+ K+G V +++ + A Sbjct: 1756 FAIGHSLGDALWSLLPVEEVVYQSAVFDFLCRNAPRELKLLFKLGPVERSVVEAVQEFAT 1815 Query: 443 AIARPLYAYLSSSARKLLL-KGSKTYRPFDTEESLQFEGVLQHAVSIATPPPRLTGG 276 + Y +L+S+ RK+LL + + + P D E Q +G L + S+ P LTGG Sbjct: 1816 WASYAFYRFLNSAQRKVLLTRSPQLHFPGDAPEVSQLQGELLQSFSMMQPTLPLTGG 1872 Score = 403 bits (1035), Expect = e-109 Identities = 230/554 (41%), Positives = 311/554 (56%), Gaps = 2/554 (0%) Frame = -1 Query: 5954 LFESLSNTIHRDTVTSPLVEAVADPLRDSLEKYPYAVSPSLTSFLSKRGINISGYGAKTH 5775 L E L+ T HRDTV SP++EAVA PLR S+++YPY V L + GI SG+G K H Sbjct: 84 LVEMLAPTTHRDTVASPILEAVAGPLRTSIQRYPYEVPAHAVPVLQRFGIEASGFGFKAH 143 Query: 5774 PHPAHKNIENYILQDVWPNLIRNQSSVLFMKPSKFRKLEQKDSNFHELINYRLTPQDTTR 5595 PHP HK IE ++L + W NL R+ S+VLFMK SKF KL+ +++NF L NY LT +DTTR Sbjct: 144 PHPVHKTIEIHLLFEHWLNLCRSPSAVLFMKQSKFEKLQHENANFEALANYNLTARDTTR 203 Query: 5594 YPSSSTTLPAHSTVFMHDALMYYTPGDIADLFLSAPHLTQLYATLVVPPESSFTDTSFFP 5415 Y + P + FMHDAL Y++ +A F PHL +L+A+LVVPPES FT+ S FP Sbjct: 204 YEQVAVAPPTQAVWFMHDALQYFSLSQVAAFFADCPHLEKLFASLVVPPESDFTNLSLFP 263 Query: 5414 ELYNFHFHDTDLVYELEGNPSHHYIQPKSALDWLRTSTIRCSDLTLSISILESIGPVHHL 5235 E+Y + F + L Y+LEGNP H Y QP+ AL+WL+T+TIRC +L L+++ LES GPVH L Sbjct: 264 EIYRYSFAGSRLNYQLEGNPGHSYSQPREALEWLKTTTIRCGNLYLTVTKLESWGPVHSL 323 Query: 5234 LIQRGLAPKHRENTTRDFDTPDCFLLPAPTSLSQNVRDRLVPLAAYHSLRAYVMAVRTLR 5055 LIQRG H E+ F PD LP +L Q++R RLVP Y +L YV AVRTLR Sbjct: 324 LIQRGKPSVHLEHDEVSFVGPDAVALPEAAALRQDLRHRLVPRTVYDALFVYVRAVRTLR 383 Query: 5054 TTDPAGFVRTQSTKPEFAWVTAEAWDSLQNFALLTCNQRPAVSYLTFASSFARIKHWXXX 4875 TTDP GFVRTQS K E++WVT+ AWD+LQ+F T R + F S+FA+ ++W Sbjct: 384 TTDPVGFVRTQSNKAEYSWVTSAAWDNLQHFVTETAAHRVPNRHFFFNSTFAKCRYWCSQ 443 Query: 4874 XXXXXXXXXXXXXXAVS-FTTVKVAHYCSTRQIDSLILFGKQIVRPSCPLNSPFSLHQYF 4698 ++ FT K+A S+R + +L +F +V P +F Sbjct: 444 HKLGLLTVTTPPACGLTLFTGAKLASAMSSR-LTALAVFHHWVVPPPT---------LFF 493 Query: 4697 SRTAQLPPSLSTQLPRFELVTSPRIITKWSPCLARFLLSTPFFRTLTTQLNFLSKKCFFA 4518 + A L T+LP+ + P + R L PF R + F Sbjct: 494 TPKAPLLAIQLTRLPQPLFSSVPFLHKPLGKLSLRLLNRFPFLR-----------RFFPD 542 Query: 4517 KGFPHSRKLXXXXXXXXXILW-AYRRFMGPDAPQAMFDQYNGYFNPKPWKLRIAQGPTKC 4341 P +L +W A R F+GPDAPQA+ D Y +F+P W+L + P Sbjct: 543 APIPTWARLLTVAIALSPAVWLAIRHFIGPDAPQALNDHYVRFFHPDRWQLTFERQPRFV 602 Query: 4340 SRGQFLPFCPRPHS 4299 + + P+ P P + Sbjct: 603 ALDRTFPW-PLPQA 615 >ref|YP_004300278.1| replication-associated polyprotein [Fig fleck-associated virus] gi|326380895|emb|CAQ86912.3| replication-associated polyprotein [Fig fleck-associated virus] Length = 2161 Score = 1012 bits (2616), Expect = 0.0 Identities = 567/1173 (48%), Positives = 727/1173 (61%), Gaps = 27/1173 (2%) Frame = -1 Query: 3770 ERSTLILDPSGFGEVSTFAQLYPDDYVLGCAEFFCRKRHHGVSTAPFP-----TMP---C 3615 E S LILDP+ G V+TF+ ++ GCA+F R+R+ G P+P + P C Sbjct: 698 ENSRLILDPTAIGPVTTFSSTLSRSWLPGCADFPFRRRNPGSPHLPYPPPLASSSPHPCC 757 Query: 3614 LLDAVGSCLGVTPAELWSTLCHHLPDSLLQNPQITSCGLSTDHLTALSHFYQFKAFVTSD 3435 LL A + GV LW+ LC PDSLL T+ GLST+HLTAL +Y A V S+ Sbjct: 758 LLVAFSNATGVFKETLWTLLCETFPDSLLD----TTLGLSTEHLTALCGYYFAAATVHSE 813 Query: 3434 QEPIPHPYGVDSAPTTIRFSHTTGNPGHFFITSDPGAPPPPKXXXXXXXXXXXXXXLTTF 3255 YGV + HTTG PGHF + G P + F Sbjct: 814 HASCV--YGVTDPVIKLTIRHTTGFPGHFELILLGGTP------NAFSMVSPLSQSILNF 865 Query: 3254 RLNGELLPFQTVHNYRANVKRAKNLISNMKNGFDGVMATVDPQHPNSAKEKFVTTDGILD 3075 + + LP + VHNY A RAKNL SN+KN FDG+MA+ +P P++A FV+ D LD Sbjct: 866 TYSKKPLPIKQVHNYVALPHRAKNLSSNLKNSFDGIMASANPLSPSTAAAAFVSLDNRLD 925 Query: 3074 IAKSRSIKLIHIAGFPGCGKSYPIQRLLLTAPRARNFRISVPTAELRHEWKASMDLEPKN 2895 R ++L+H+AGF GCGKS PIQ LL RNFR+SVPT ELR+EWK + L+ Sbjct: 926 FQPPRCVQLVHLAGFAGCGKSLPIQNLLRHNQDFRNFRVSVPTTELRNEWKKDLQLKSTE 985 Query: 2894 NWRIGTWEXXXXXXXXXLVVDEIYKMPRGYLDLAILMDPHLEMVIVLGDPLQGEYHSTHP 2715 +WRI TWE LV+DEIYKMPRGYLDL IL DP ++ VI+LGDPLQGEYHS +P Sbjct: 986 SWRINTWESSLLKTSPILVIDEIYKMPRGYLDLTILADPTIQFVIILGDPLQGEYHSLNP 1045 Query: 2714 QSSNHKLSSEINHLRPYLDFYCAWTRRCPKLIADFFGVPTTSQEPGFCRPVNHLPMN--C 2541 SSNH LSSEI HL PY+D+YC W+ R P+ +A+FF + ++++ PGFC HLP + Sbjct: 1046 SSSNHHLSSEITHLLPYIDYYCMWSYRVPRKLANFFNISSSNKNPGFCSFSLHLPTDPSS 1105 Query: 2540 PILTNSHSAALTLTEAHSRACTISASQGSTYSSPVVIHLDRHSSQLSNSMALVALTRSTK 2361 PILT S S A L + RA TIS+SQG T P I+LDR+ LS S +VALTRS Sbjct: 1106 PILTCSQSQAKILNDTGHRALTISSSQGLTLDKPAHIYLDRNIPLLSPSNVIVALTRSRV 1165 Query: 2360 GVLFSGDQSILQPGPHSAKLFSQLTQFQSSHSPDDRYPIQTHFIEQLRGVTLISTPLKSR 2181 G+ F+GD + S + L + + + HF L V +I++PL +R Sbjct: 1166 GLCFTGDSDMFNCIRRSTPILEALFSGR-------QIDLAHHFPSILSRVNIITSPLPAR 1218 Query: 2180 K-LVGACPSEVKHSSTVRDFTHHAIRGSTVR------DPSYQPSLAHVVRHTSPAIYHSE 2022 + L G PS SS R A+ R P P++A+ P++ S+ Sbjct: 1219 RTLFGGAPSHSSLSSGPRPRLVPALVPGLNRFTSLPSAPRPGPAVAN-----PPSLPLSQ 1273 Query: 2021 LNRLHPDFKGDAVRSAVIVCGDGIDHLPR--VSPHFIAETRLPYHSDMPSAMPSQCSLSP 1848 + + PD + D V +V I+ P+ + ETR P H ++P S + SP Sbjct: 1274 MQSVDPDSQHDVV----LVYPQPIECEPQRAADATILPETRRPLHHELPFVELSSPNPSP 1329 Query: 1847 PTFSAPVFEPVYPGEDFETLASTFLPAHDPHLREIIFKGERSAQFPYLNQPFDLFLQPQT 1668 FS F YPG D++ +A FL P +EI+++G S+QFP+LN L QP T Sbjct: 1330 ALFSETAFSHSYPGVDWQLIAGHFLSPFTPEEKEIMYRGTLSSQFPHLNIESRLGPQPLT 1389 Query: 1667 LIAAQHHGQKDSTLLPASIPKRLRFRRNSTPYVISPKDQLLGELLFISLCKAYNRHPSSV 1488 L AA H+ ++DSTLLPASI KRLRFR ++ PY ISP DQLLG LLF+SLCKAY+R P + Sbjct: 1390 LSAANHNSKRDSTLLPASIKKRLRFRPSARPYSISPSDQLLGHLLFLSLCKAYHRSPDPI 1449 Query: 1487 EPFDEALFADCINLNEFAQLSSKTQTTIMANASRSDPDWRWSAVRIFSKSQHKTNEASIF 1308 E F+ LF DCI LN+++QL+SKTQ TI ANA RSDPDWRWSA RIF+K+QHK NE SIF Sbjct: 1450 E-FNFPLFVDCIELNDYSQLTSKTQKTIQANAYRSDPDWRWSAARIFAKTQHKVNEGSIF 1508 Query: 1307 GSWKACQTLALMHDAVVLLLGPVKKYQRLFDNRDRPANIYVHASHTPFQMSDWCRENLSS 1128 G WKACQTLAL+HDAV+L+ GP+KKYQR FD++DRP ++YVHA TP Q+S WC++ L+ Sbjct: 1509 GPWKACQTLALLHDAVILIFGPIKKYQRHFDDKDRPPHLYVHAGKTPHQLSSWCQQFLTP 1568 Query: 1127 CEHVANDYTAFDQSQHGEAVVLEIKKMRRLSIPEPLIQLHAYLKTNVTTQFGPLTCMRLT 948 +ANDYTAFDQSQ GEA VLE+ KMRR+SIPE LIQLH +KT++TTQFGPLTCMRLT Sbjct: 1569 GPRLANDYTAFDQSQGGEAAVLEVLKMRRVSIPEHLIQLHKTIKTSITTQFGPLTCMRLT 1628 Query: 947 GEPGTYDDNTDYNLAVIHSQYLMASIPHMVSGDDSLIDRQPLPNPLWITIGPMLHLRFKL 768 GEPGTYDDNTDYN A+++SQ+ + P +VSGDDSLIDR PLP+P W TI +L LR K Sbjct: 1629 GEPGTYDDNTDYNTAILYSQFQLGDTPVLVSGDDSLIDRVPLPHPHWPTISNLLLLRPKP 1688 Query: 767 EVTRYPLFCGYLVGPSGAVRSPITLFAKSLMALDDGSLDDKLASYLTEFSVGHSLGQEMW 588 E++ + LFCGY VGP GAVR+P LFAK +A D G LD LAS+L EF+VGHSLG +W Sbjct: 1689 EISNFSLFCGYFVGPEGAVRAPRALFAKLAIAFDLGELDKCLASFLAEFTVGHSLGDLVW 1748 Query: 587 NLIPVEQVHYQAALFDFFCRKASREQKLVLKIGEVPDTIISTILSSARAIARPLYAYLSS 408 NLIP + + YQ ALFD FCR+ SREQKL L++GE+PD ++ L S Sbjct: 1749 NLIPPDLLIYQFALFDAFCRECSREQKLALRLGEIPDYSRLLRFDQFHQFTFASFSLLKS 1808 Query: 407 SARKL---LLKGSK-----TYRPFDTEESLQFE 333 SAR+L L +G K T+ F E + F+ Sbjct: 1809 SARRLYLRLFRGKKLRNVNTFPAFHPEGAASFD 1841 Score = 362 bits (930), Expect = 9e-97 Identities = 219/568 (38%), Positives = 301/568 (52%), Gaps = 23/568 (4%) Frame = -1 Query: 5954 LFESLSNTIHRDTVTSPLVEAVADPLRDSLEKYPYAVSPSLTSFLSKRGINISGYGAKTH 5775 + E LS T H+D TSPL+E+++ PLR SL+ Y +A+S TS L GIN+SG G+ H Sbjct: 6 ILEQLSFTSHKDASTSPLMESISLPLRKSLDLYKFALSKEHTSMLQAYGINVSGLGSTPH 65 Query: 5774 PHPAHKNIENYILQDVWPNLIRNQSSVLFMKPSKFRKLEQKDSNFHELINYRLTPQDTTR 5595 PHPAHK IE ++L D W L + S+V+FMK SKF KL + NF L+N+ L P+D R Sbjct: 66 PHPAHKTIETHLLFDHWSFLATSPSTVMFMKESKFNKLSKLQPNFQTLLNFHLHPKDFAR 125 Query: 5594 YPSSSTTL--PAHSTVFMHDALMYYTPGDIADLFLSAPHLTQLYATLVVPPESSFTDTSF 5421 Y L P VFMHDALMYY+ I DLF +P ++ LYA+L++PPE+ FTD S Sbjct: 126 YGPDPLPLAFPETPLVFMHDALMYYSRAQILDLFFRSPKVSHLYASLIIPPEADFTDLSL 185 Query: 5420 FPELYNFHFHDTDLVYELEGNPSHHYIQPKSALDWLRTSTIRCS---DLTLSISILESIG 5250 P LY F F DL+Y LE NPS Y QP+S+L+WL+T+ I S L+LS+++LES G Sbjct: 186 NPSLYQFQFLGQDLLYSLESNPSAQYTQPQSSLEWLKTTVIHSSTHPGLSLSVTVLESWG 245 Query: 5249 PVHHLLIQRGLAPKHRENTTRD---FDTPDCFLLPAPTSLSQNVRDRLVPLAAYHSLRAY 5079 P+H LLI R L + + D F TPDC LLP P SL+ RD LVP YH+L Y Sbjct: 246 PIHSLLISR-LTKESPIPASEDRLLFKTPDCVLLPPPLSLNVPSRDLLVPAQVYHNLFLY 304 Query: 5078 VMAVRTLRTTDPAGFVRTQSTKPEFAWVTAEAWDSLQNFALLTCNQRPAVSYLTFASSFA 4899 V AVRTLR TDP+GF+RTQ++KPE+AWVT+ AWD L F LLTC RP + + Sbjct: 305 VRAVRTLRVTDPSGFIRTQNSKPEYAWVTSNAWDHLAQFMLLTCPIRPNSHFAYLVTPLL 364 Query: 4898 RIKHWXXXXXXXXXXXXXXXXXAVSFTTVKVAHYCSTRQIDSLILFGKQIVRPSC-PLN- 4725 R++H + +A + I + LF ++ + PLN Sbjct: 365 RLRHQLKTLSRSSLNSLILAVPSSFLCLGLLARRLFSSTITQIFLFRNPLLASTTPPLNN 424 Query: 4724 ---------SPFSLHQYFSRTAQLPPSLSTQLPRFELVTSPRIITKWSP--CLARFLLST 4578 + + L+Q S + S +LP F++V +P+ + P FL Sbjct: 425 ARQPVLTRLADWFLNQLPSFVQRKLSPPSPRLPIFKVVLTPKPVQYTYPPDVPPLFLKFA 484 Query: 4577 P--FFRTLTTQLNFLSKKCFFAKGFPHSRKLXXXXXXXXXILWAYRRFMGPDAPQAMFDQ 4404 P ++N + + F + + + R P +PQ + D Sbjct: 485 PPRILHLFRQEVNHVPRWLF---------PITLSASALSALYLLFVRLSSPSSPQELSDS 535 Query: 4403 YNGYFNPKPWKLRIAQGPTKCSRGQFLP 4320 Y YF+PKPWKL + + F P Sbjct: 536 YRRYFHPKPWKLFLERKEHFTPEAPFFP 563 >ref|NP_044328.1| replicase [Kennedya yellow mosaic virus] gi|548564|sp|P36304.1|POLR_KYMVJ RecName: Full=RNA replicase polyprotein gi|221971|dbj|BAA00532.1| unnamed protein product [Kennedya yellow mosaic virus] Length = 1874 Score = 997 bits (2578), Expect = 0.0 Identities = 551/1169 (47%), Positives = 725/1169 (62%), Gaps = 17/1169 (1%) Frame = -1 Query: 3788 PDDTTPERSTLILDPSGFGEVSTFAQLYPDDYVLGCAEFFCRKRHHGVSTAPFPTMPCLL 3609 P T +S L+ DP+ G +F+ LYP D+ A F R R + P P CLL Sbjct: 753 PKPPTEVQSPLMADPTCVGPAVSFSSLYPRDFFPNTASFLTRLRLSPPTPLPMPKNNCLL 812 Query: 3608 DAVGSCLGVTPAELWSTLCHHLPDSLLQNPQITSCGLSTDHLTALSHFYQFKAFVTSDQE 3429 AV L + P LW++L LPDSLL N +I S G+STD LTALSH + F+A V S++ Sbjct: 813 TAVAPSLHINPHRLWTSLQEVLPDSLLSNSEIDSVGMSTDLLTALSHLFNFQAVVHSERG 872 Query: 3428 PIPHPYGVDSAPTTIRFSHTTGNPGHFFITSDPGAPPPPKXXXXXXXXXXXXXXLTT--- 3258 I +G+ SA T I HT G P H+ PPPK L Sbjct: 873 DIL--FGLQSAKTVIHIYHTNGPPAHY--------SPPPKIIGSNSPPSSQQHPLEQAAL 922 Query: 3257 -FRLNGELLPFQTVHNYRANVKRAKNLISNMKNGFDGVMATVDP----QHPNSAKEKFVT 3093 F+ G LPF + H++ +V+ AKNLISNMKNGFDGVM+T++P Q +S +EKF+ Sbjct: 923 RFKYQGSHLPFSSFHSFTTSVQHAKNLISNMKNGFDGVMSTIEPSIRHQPGHSPREKFIA 982 Query: 3092 TDGILDIAKSRSIKLIHIAGFPGCGKSYPIQRLLLTAPRARNFRISVPTAELRHEWKASM 2913 D ++D+A+ +++ + H+AGF GCGK+ P+Q LL T P +FR+S PT ELR+EWK M Sbjct: 983 LDAMIDLARPKTVSMFHLAGFAGCGKTKPLQSLLSTRP-FHSFRVSTPTTELRNEWKKDM 1041 Query: 2912 DLEPKNNWRIGTWEXXXXXXXXXLVVDEIYKMPRGYLDLAILMDPHLEMVIVLGDPLQGE 2733 +L +R TWE LV+DEIYK+PRGYLDL IL DP LE+VI+LGDPLQGE Sbjct: 1042 NLPASQAFRFCTWESSLLKQTKILVIDEIYKLPRGYLDLCILADPCLELVIILGDPLQGE 1101 Query: 2732 YHSTHPQSSNHKLSSEINHLRPYLDFYCAWTRRCPKLIADFFGVPTTSQEPGF----CRP 2565 YHST P SSNH+L SE L P++D YC WT R P IAD F VP+ ++ G R Sbjct: 1102 YHSTSPHSSNHQLQSETTRLLPFIDHYCWWTYRVPSHIADLFSVPSFNRSEGHYQMAVRT 1161 Query: 2564 VNHLPMNCPILTNSHSAALTLTEAHSRACTISASQGSTYSSPVVIHLDRHSSQLSNSMAL 2385 + L NS + A + + A TISASQG T+ + V I LD+HS LS S L Sbjct: 1162 ADSYTPGHFNLVNSVATANAVIQLGFPATTISASQGVTHHNRVTILLDKHSRLLSPSNTL 1221 Query: 2384 VALTRSTKGVLFSGDQSILQPGPHSAKLFSQLTQFQSSHSPDDRYPIQTHFIEQLRGVTL 2205 VALTRST GV F GD L +S+ +FS+ Q + + + F + L Sbjct: 1222 VALTRSTVGVEFLGDIGSLSGTNNSSDMFSRAIYRQPIN-------LSSSFPRIFHLLPL 1274 Query: 2204 ISTPL--KSRKLVGACPSEVKHSSTVRDFTHHAIRGSTVRDPSYQPSLAHVVRHTSPAIY 2031 ++ P+ +S +L+G+ S + H+ + + H+ H P Y Sbjct: 1275 LNKPISRRSTRLIGS-HSPIFHNPRLTNI--------------------HLPPHI-PTSY 1312 Query: 2030 HSELNRLHPDFKGDAVRSAVIVCGDGIDHLPRVSPHFIAETRLPYHSDMPSAMPSQCSLS 1851 + +P F+G A PR+ HF+ TRLP S++ A SQ + Sbjct: 1313 SQDFVVSNPIFQGQAD--------------PRLDTHFLPPTRLPLQSELLPAQLSQTTKP 1358 Query: 1850 PPTFSAPV-FEPVYPGEDFETLASTFLPAHDPHLREIIFKGERSAQFPYLNQPFDLFLQP 1674 +F+ F PVYPGE+FE LA+ FLPAHDP L+E+ + + SAQFP+ ++PF L QP Sbjct: 1359 TDSFTNNTPFTPVYPGENFENLAAFFLPAHDPELKEVTRRDQTSAQFPWFDRPFSLSCQP 1418 Query: 1673 QTLIAAQHHGQKDSTLLPASIPKRLRFRRNSTPYVISPKDQLLGELLFISLCKAYNRHPS 1494 +LIAA+H +D TLLP SIPKRLRFR++ P+V+S D LLG LF +LCKAY R+P+ Sbjct: 1419 SSLIAAKHSPSQDPTLLPFSIPKRLRFRKSDNPHVLSAIDVLLGNQLFFNLCKAYRRNPT 1478 Query: 1493 SVEPFDEALFADCINLNEFAQLSSKTQTTIMANASRSDPDWRWSAVRIFSKSQHKTNEAS 1314 V PF+ ALFA+CI LN++AQLSSKTQ T++AN SRSDPDWR +AV+IF+KSQHK N+AS Sbjct: 1479 HVGPFNPALFAECIALNDYAQLSSKTQATLVANHSRSDPDWRHTAVKIFAKSQHKVNDAS 1538 Query: 1313 IFGSWKACQTLALMHDAVVLLLGPVKKYQRLFDNRDRPANIYVHASHTPFQMSDWCRENL 1134 IFG+WKACQTLALMHD V+L LGPVKKYQR+FD DRP ++Y H +P +S WC+ +L Sbjct: 1539 IFGNWKACQTLALMHDFVILSLGPVKKYQRIFDALDRPPHLYTHCGKSPADLSAWCQTHL 1598 Query: 1133 SSCEHVANDYTAFDQSQHGEAVVLEIKKMRRLSIPEPLIQLHAYLKTNVTTQFGPLTCMR 954 + + NDYTAFDQSQHGE+V+LE KM+RLSIP LIQLH +LKTNV TQFGPLTCMR Sbjct: 1599 TGQIKLTNDYTAFDQSQHGESVILEALKMKRLSIPSHLIQLHVHLKTNVATQFGPLTCMR 1658 Query: 953 LTGEPGTYDDNTDYNLAVIHSQYLMASIPHMVSGDDSLIDRQPLPNPLWITIGPMLHLRF 774 LTGEPGTYDDN+DYNLAVIHSQ+ M IP MVSGDDSLIDRQP W +LHLRF Sbjct: 1659 LTGEPGTYDDNSDYNLAVIHSQFDMKDIPVMVSGDDSLIDRQPPLAQSWEATKRLLHLRF 1718 Query: 773 KLEVTRYPLFCGYLVGPSGAVRSPITLFAKSLMALDDGSLDDKLASYLTEFSVGHSLGQE 594 K E T +PLFCGY G +GA+R+P+ LF+K ++A+DD ++ D+ SYLTEFS GH LG Sbjct: 1719 KTEKTTHPLFCGYYTGSAGAIRNPLALFSKLMIAIDDEAIHDRRLSYLTEFSTGHQLGDA 1778 Query: 593 MWNLIPVEQVHYQAALFDFFCRKASREQKLVLKIGEVPDTIISTILSSARAIARPLYAYL 414 +W L+P YQ+A FD+FCR + +K +L E+PD++IS I SS + +++ + L Sbjct: 1779 LWTLLPESTQIYQSACFDYFCRHSPPHEKALLSSFELPDSVISKISSSTKWLSKNAFYAL 1838 Query: 413 SSSARKLLL--KGSKTYRPFDTEESLQFE 333 S RK ++ + S ++ L+FE Sbjct: 1839 PSKIRKAVIASRHSSSFPENPDVSQLEFE 1867 Score = 328 bits (842), Expect = 1e-86 Identities = 180/376 (47%), Positives = 225/376 (59%), Gaps = 21/376 (5%) Frame = -1 Query: 5948 ESLSNTIHRDTVTSPLVEAVADPLRDSLEKYPYAVSPSLTSFLSKRGINISGYGAKTHPH 5769 ++L++T H+D P++E+V D L DSL+ YP+ V L FL K GI I+ +G+ HPH Sbjct: 8 DALASTSHKDPSLHPVLESVHDSLTDSLQTYPWMVPQDLQPFLLKSGIPINSFGSSPHPH 67 Query: 5768 PAHKNIENYILQDVWPNLIRNQSSVLFMKPSKFRKLEQKDSNFHELINYRLTPQDTTRYP 5589 PAHK +E ++L W +L SSVLFMKP KF KL++K+ F L NYRLTP D+ R+P Sbjct: 68 PAHKTLETHLLFTHWMHLCTQPSSVLFMKPQKFMKLQRKNKFFQHLHNYRLTPTDSVRFP 127 Query: 5588 SSSTTLPAHSTVFMHDALMYYTPGDIADLFLSAPHLTQLYATLVVPPESSFTDTSFFPEL 5409 S+S LP VFMHDALMYY P I LF P LT L+ +LV PPES FT S P+L Sbjct: 128 STSPHLPNTPFVFMHDALMYYQPEQILHLFHQVPQLTNLFCSLVTPPESHFTHLSLMPDL 187 Query: 5408 YNFHFHDTDLVYELEGNPSHHYIQPKSALDWLRTSTIRCSDLTLSISILESIGPVHHLLI 5229 Y F L Y EG+ + Y QP +AL WL+ ++I +L LSI+ILES GP+H +LI Sbjct: 188 YTFTLKGQTLHYTPEGHSAGSYNQPITALSWLKINSILSPNLNLSITILESWGPLHSILI 247 Query: 5228 QRGLA---PK-------------HRENTTRDFDTPDCFLLPAPTSLSQNVRDRLVPLAAY 5097 QRGL PK E F P LP T LSQ +R RLVP + Y Sbjct: 248 QRGLPLPDPKLLVRSLPPFSRSPDPETDLVSFQVPKSVELPQATFLSQPLRHRLVPESVY 307 Query: 5096 HSLRAYVMAVRTLRTTDPAGFVRTQSTKPEFAWVTAEAWDSLQNFALLTCNQRPAVSYLT 4917 ++L Y AVRTLR +DPAGFVRTQS KPE WVT AWD+LQ FALL C RP V Y Sbjct: 308 NALFTYTRAVRTLRVSDPAGFVRTQSNKPEHKWVTPSAWDNLQTFALLNCPLRPNVVYHV 367 Query: 4916 FASSFARIK-----HW 4884 + ++K HW Sbjct: 368 LLNPLQKMKLYFSQHW 383 >sp|P10358.2|POLR_TYMV RecName: Full=RNA replicase polyprotein; AltName: Full=206 kDa polyprotein; Contains: RecName: Full=Methyltransferase/Protease; AltName: Full=98 kDa protein; AltName: Full=MET/PRO; Contains: RecName: Full=Putative helicase; AltName: Full=42 kDa protein; AltName: Full=HEL; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=66 kDa protein; AltName: Full=POL Length = 1844 Score = 991 bits (2563), Expect = 0.0 Identities = 554/1162 (47%), Positives = 718/1162 (61%), Gaps = 16/1162 (1%) Frame = -1 Query: 3749 DPSGFGEVSTFAQLYPDDYVLGCAEFFCRKRHHGVSTAPFPTMPCLLDAVGSCLGVTPAE 3570 DP+ G V F +L+P Y A F R R + P PT+ CLL AV V+ Sbjct: 739 DPTAIGPVLPFEELHPRRYPENTATFLTRLRSLPSNHLPQPTLNCLLSAVSDQTKVSEEH 798 Query: 3569 LWSTLCHHLPDSLLQNPQITSCGLSTDHLTALSHFYQFKAFVTSDQEPIPHPYGVDSAPT 3390 LW +L LPDS L N + + GLST+HLTAL+H Y F+A V SD+ PI +G Sbjct: 799 LWESLQTILPDSQLSNEETNTLGLSTEHLTALAHLYNFQATVYSDRGPIL--FGPSDTIK 856 Query: 3389 TIRFSHTTGNPGHF-----FITSDPGAPPPPKXXXXXXXXXXXXXXLTTFRLNGELLPFQ 3225 I +HTTG P HF + S P A P +F+++G LPF Sbjct: 857 RIDITHTTGPPSHFSPGKRLLGSQPSAKGHPSDPLIRAMK--------SFKVSGNYLPFS 908 Query: 3224 TVHNYRANVKRAKNLISNMKNGFDGVMATVDPQHPN----SAKEKFVTTDGILDIAKSRS 3057 HN+ ++ AKNLISNMKNGFDGV++ +D + KE+ + D LD ++ Sbjct: 909 EAHNHPTSISHAKNLISNMKNGFDGVLSLLDVSTGQRTGPTPKERIIQIDHYLDTNPGKT 968 Query: 3056 IKLIHIAGFPGCGKSYPIQRLLLTAPRARNFRISVPTAELRHEWKASMDLEPKNNWRIGT 2877 ++H AGF GCGK+YPIQ+LL T ++FR+S PT ELR EWK +M+L +WR T Sbjct: 969 TPVVHFAGFAGCGKTYPIQQLLKTK-LFKDFRVSCPTTELRTEWKTAMELHGSQSWRFNT 1027 Query: 2876 WEXXXXXXXXXLVVDEIYKMPRGYLDLAILMDPHLEMVIVLGDPLQGEYHSTHPQSSNHK 2697 WE LV+DEIYKMPRGYLDL+IL DP LE+VI+LGDPLQGEYHS SSNH+ Sbjct: 1028 WESSILKSSRILVIDEIYKMPRGYLDLSILADPALELVIILGDPLQGEYHSQSKDSSNHR 1087 Query: 2696 LSSEINHLRPYLDFYCAWTRRCPKLIADFFGVPTTSQEPGFCRPVNHLPMNCPILTNSHS 2517 L SE L PY+D YC W+ R P+ IA F + + + G V+ P+LTNSH+ Sbjct: 1088 LPSETLRLLPYIDMYCWWSYRIPQCIARLFQIHSFNAWQGVIGSVSTPHDQSPVLTNSHA 1147 Query: 2516 AALTLTEAHSRACTISASQGSTYSSPVVIHLDRHSSQLSNSMALVALTRSTKGVLFSGDQ 2337 ++LT R+CTIS+SQG T+ P +I LD ++ LS++ LVALTRS GV F G Sbjct: 1148 SSLTFNSLGYRSCTISSSQGLTFCDPAIIVLDNYTKWLSSANGLVALTRSRSGVQFMGPS 1207 Query: 2336 SILQPGPHSAKLFSQLTQFQSSHSPDDRYPIQTHFIEQLRGVTLISTPLKSR--KLVGAC 2163 S + S+ +FS F +S DRY F + LI++PL +R KL GA Sbjct: 1208 SYVGGTNGSSAMFSD--AFNNSLIIMDRY-----FPSLFPQLKLITSPLTTRGPKLNGAT 1260 Query: 2162 PSEVKHSSTVRDFTHHAIRGSTVRDPSYQPSLAHVVRHTSPAIYHSELNRLHPDFKGDAV 1983 PS T R P++ H+ H P Y + ++P Sbjct: 1261 PS----------------ASPTHRSPNF-----HLPPHI-PLSYDRDFVTVNPTLPDQGP 1298 Query: 1982 RSAVIVCGDGIDHLPRVSPHFIAETRLPYHSDMPSAM---PSQCSLSPPTFSAPVFEPVY 1812 + R+ HF+ +RLP H D+P A+ P S+ PP A PVY Sbjct: 1299 ET-------------RLDTHFLPPSRLPLHFDLPPAITPPPVSTSVDPPQAKA---SPVY 1342 Query: 1811 PGEDFETLASTFLPAHDPHLREIIFKGERSAQFPYLNQPFDLFLQPQTLIAAQHHGQKDS 1632 PGE F++LA+ FLPAHDP REI+ K + S QFP+ ++PF L QP +LI+A+H D Sbjct: 1343 PGEFFDSLAAFFLPAHDPSTREILHKDQSSNQFPWFDRPFSLSCQPSSLISAKHAPNHDP 1402 Query: 1631 TLLPASIPKRLRFRRNSTPYVISPKDQLLGELLFISLCKAYNRHPSSVEPFDEALFADCI 1452 TLLPASI KRLRFR + +P+ I+ D +LG LF SLC+AY+R P+S PF+ LFA+CI Sbjct: 1403 TLLPASINKRLRFRPSDSPHQITADDVVLGLQLFHSLCRAYSRQPNSTVPFNPELFAECI 1462 Query: 1451 NLNEFAQLSSKTQTTIMANASRSDPDWRWSAVRIFSKSQHKTNEASIFGSWKACQTLALM 1272 +LNE+AQLSSKTQ+TI+ANASRSDPDWR + V+IF+K+QHK N+ SIFGSWKACQTLALM Sbjct: 1463 SLNEYAQLSSKTQSTIVANASRSDPDWRHTTVKIFAKAQHKVNDGSIFGSWKACQTLALM 1522 Query: 1271 HDAVVLLLGPVKKYQRLFDNRDRPANIYVHASHTPFQMSDWCRENLS-SCEHVANDYTAF 1095 HD V+L+LGPVKKYQR+FDN DRP NIY H TP Q+ DWC+E+L+ S +ANDYTAF Sbjct: 1523 HDYVILVLGPVKKYQRIFDNADRPPNIYSHCGKTPNQLRDWCQEHLTHSTPKIANDYTAF 1582 Query: 1094 DQSQHGEAVVLEIKKMRRLSIPEPLIQLHAYLKTNVTTQFGPLTCMRLTGEPGTYDDNTD 915 DQSQHGE+VVLE KM+RL+IP LIQLH +LKTNV+TQFGPLTCMRLTGEPGTYDDNTD Sbjct: 1583 DQSQHGESVVLEALKMKRLNIPSHLIQLHVHLKTNVSTQFGPLTCMRLTGEPGTYDDNTD 1642 Query: 914 YNLAVIHSQYLMASIPHMVSGDDSLIDRQPLPNPL-WITIGPMLHLRFKLEVTRYPLFCG 738 YNLAVI+SQY + S P MVSGDDSLID PLP W ++ LHLRFKLE+T +PLFCG Sbjct: 1643 YNLAVIYSQYDVGSCPIMVSGDDSLID-HPLPTRHDWPSVLKRLHLRFKLELTSHPLFCG 1701 Query: 737 YLVGPSGAVRSPITLFAKSLMALDDGSLDDKLASYLTEFSVGHSLGQEMWNLIPVEQVHY 558 Y VGP+G +R+P+ LF K ++A+DD +LDD+ SYLTEF+ GH LG+ +W+L+P V Y Sbjct: 1702 YYVGPAGCIRNPLALFCKLMIAVDDDALDDRRLSYLTEFTTGHLLGESLWHLLPETHVQY 1761 Query: 557 QAALFDFFCRKASREQKLVLKIGEVPDTIISTILSSARAIARPLYAYLSSSARKLLLKGS 378 Q+A FDFFCR+ R +K++L +++ I SS R + + L + R + S Sbjct: 1762 QSACFDFFCRRCPRHEKMLLDDSTPALSLLERITSSPRWLTKNAMYLLPAKLRLAITSLS 1821 Query: 377 KTYRPFDTEESLQFEGVLQHAV 312 +T ++ E E L H V Sbjct: 1822 QTQSFPESIEVSHAESELLHYV 1843 Score = 333 bits (855), Expect = 5e-88 Identities = 215/582 (36%), Positives = 291/582 (50%), Gaps = 36/582 (6%) Frame = -1 Query: 5948 ESLSNTIHRDTVTSPLVEAVADPLRDSLEKYPYAVSPSLTSFLSKRGINISGYGAKTHPH 5769 ++L+ T HRD P++E+ D +R S++ YP+++ L L+ GI SG G HPH Sbjct: 8 DALAPTTHRDPSLHPILESTVDSIRSSIQTYPWSIPKELLPLLNSYGIPTSGLGTSHHPH 67 Query: 5768 PAHKNIENYILQDVWPNLIRNQSSVLFMKPSKFRKLEQKDSNFHELINYRLTPQDTTRYP 5589 AHK IE ++L W SSV+FMKPSKF KL Q +SNF EL NYRL P D+TRYP Sbjct: 68 AAHKTIETFLLCTHWSFQATTPSSVMFMKPSKFNKLAQVNSNFRELKNYRLHPNDSTRYP 127 Query: 5588 SSSTTLPAHSTVFMHDALMYYTPGDIADLFLSAPHLTQLYATLVVPPESSFTDTSFFPEL 5409 +S LP T+FMHDALMYY P I DLFL P+L +LYA+LVVPPE+ +D SF+P+L Sbjct: 128 FTSPDLPVFPTIFMHDALMYYHPSQIMDLFLRKPNLERLYASLVVPPEAHLSDQSFYPKL 187 Query: 5408 YNFHFHDTDLVYELEGNPSHHYIQPKSALDWLRTSTIRCSDLTLSISILESIGPVHHLLI 5229 Y + L Y EG+ + Y QP A WLR ++IR + LS++ILES GPVH LLI Sbjct: 188 YTYTTTRHTLHYVPEGHEAGSYNQPSDAHSWLRINSIRLGNHHLSVTILESWGPVHSLLI 247 Query: 5228 QRGLAP--------------------KHRENTTRDFDTPDCFLLPAPTSLSQNVRDRLVP 5109 QRG P + F PD LP T L Q +RDRLVP Sbjct: 248 QRGTPPPDPSLQAPPTLMTSDLFRSYQEPRLDVVSFRIPDAIELPQATFLQQPLRDRLVP 307 Query: 5108 LAAYHSLRAYVMAVRTLRTTDPAGFVRTQSTKPEFAWVTAEAWDSLQNFALLTCNQRPAV 4929 A Y++L Y AVRTLRT+DPA FVR S+KP+ WVT+ AWD+LQ FALL RP V Sbjct: 308 RAVYNALFTYTRAVRTLRTSDPAAFVRMHSSKPDHDWVTSNAWDNLQTFALLNVPLRPNV 367 Query: 4928 SYLTFASSFARI-----KHWXXXXXXXXXXXXXXXXXAVSFTTVKVAHY---CSTRQIDS 4773 Y S A + +HW +SF T+ ++ S Sbjct: 368 VYHVLQSPIASLSLYLRQHW--------RRLTATAVPILSFLTLLQRFLPLPIPLAEVKS 419 Query: 4772 LILFGKQIVR---PSCPLNSPFSLHQYFSRTAQLPPSLSTQLPRFELVTSPRIITKWSPC 4602 + F +++ R P PL+ H+ + + + P +L P + K + Sbjct: 420 ITAFRRELYRKKEPHHPLDVFHLQHRVRNYHSAISAVRPASPPHQKL---PHALQKAALL 476 Query: 4601 LAR----FLLSTPFFRTLTTQLNFLSKKCFFAKGFPHSRKLXXXXXXXXXILWAYRRFMG 4434 L R L +TPFFR+ + ++ + K F + + Sbjct: 477 LLRPISPLLTATPFFRSEQKSMLPNAELSWTLKRFALPWQASLVLLALSESSILLHKLFS 536 Query: 4433 PDAPQAMFDQYNGYFNPKPWKLRIAQGPTKCSR-GQFLPFCP 4311 P QA D Y+ + +P + L+ + P R FLPF P Sbjct: 537 PPTLQAQHDTYHRHLHPGSYSLQWERTPLSIPRTTAFLPFTP 578 >gb|AAB92649.1| replicase protein [Turnip yellow mosaic virus] Length = 1844 Score = 991 bits (2562), Expect = 0.0 Identities = 552/1162 (47%), Positives = 721/1162 (62%), Gaps = 16/1162 (1%) Frame = -1 Query: 3749 DPSGFGEVSTFAQLYPDDYVLGCAEFFCRKRHHGVSTAPFPTMPCLLDAVGSCLGVTPAE 3570 DP+ G V F +L+P Y A F R R + P PT+ CLL AV V+ Sbjct: 739 DPTAIGPVLPFEELHPRKYPENTATFLTRLRSLPSNHLPQPTLNCLLSAVSDQTKVSEDH 798 Query: 3569 LWSTLCHHLPDSLLQNPQITSCGLSTDHLTALSHFYQFKAFVTSDQEPIPHPYGVDSAPT 3390 LW +L LPDS L+N +I S GLST+HLTAL+H Y F+A V SD+ PI +G Sbjct: 799 LWESLQTILPDSQLRNEEINSLGLSTEHLTALAHLYNFQATVYSDRGPIL--FGPSDTIK 856 Query: 3389 TIRFSHTTGNPGHF-----FITSDPGAPPPPKXXXXXXXXXXXXXXLTTFRLNGELLPFQ 3225 I +HTTG P HF + S P A P +F+++G LPF Sbjct: 857 RIDITHTTGPPSHFSPGKRLLGSQPSAKRHPSDSLIRAMK--------SFKVSGNYLPFS 908 Query: 3224 TVHNYRANVKRAKNLISNMKNGFDGVMATVDPQHPN----SAKEKFVTTDGILDIAKSRS 3057 HN+ ++ AKNL+SNMKNGFDGV++ +D + K+ + D LD ++ Sbjct: 909 EAHNHPTSISHAKNLVSNMKNGFDGVLSLLDVSTGQRTGPTPKDAIIQIDHYLDTNPGKT 968 Query: 3056 IKLIHIAGFPGCGKSYPIQRLLLTAPRARNFRISVPTAELRHEWKASMDLEPKNNWRIGT 2877 ++H AGF GCGK+YPIQ+LL T ++FR+S PT ELR EWK +M+L +WR T Sbjct: 969 TPVVHFAGFAGCGKTYPIQQLLKTK-LFKDFRVSCPTTELRTEWKTAMELHGSQSWRFNT 1027 Query: 2876 WEXXXXXXXXXLVVDEIYKMPRGYLDLAILMDPHLEMVIVLGDPLQGEYHSTHPQSSNHK 2697 WE LV+DEIYKMPRGYLDL+IL DP LE+VI+LGDPLQGEYHS SSNH+ Sbjct: 1028 WESSILKSSRILVIDEIYKMPRGYLDLSILADPALELVIILGDPLQGEYHSQSKDSSNHR 1087 Query: 2696 LSSEINHLRPYLDFYCAWTRRCPKLIADFFGVPTTSQEPGFCRPVNHLPMNCPILTNSHS 2517 L SE L PY+D YC W+ R P+ IA F + + + G V+ P+LTNSH+ Sbjct: 1088 LPSETLRLLPYIDMYCWWSYRIPQCIARLFRIHSFNAWQGVIGSVSTPHDQSPVLTNSHA 1147 Query: 2516 AALTLTEAHSRACTISASQGSTYSSPVVIHLDRHSSQLSNSMALVALTRSTKGVLFSGDQ 2337 ++LT R+CTIS+SQG T+ P +I LD ++ LS++ LVALTRS GV F G Sbjct: 1148 SSLTFNSLGYRSCTISSSQGLTFCDPAIIVLDNYTKWLSSANGLVALTRSRSGVQFMGPS 1207 Query: 2336 SILQPGPHSAKLFSQLTQFQSSHSPDDRYPIQTHFIEQLRGVTLISTPLKSR--KLVGAC 2163 S + S+ +FS F +S DRY F + LI++PL +R KL GA Sbjct: 1208 SYVGGTNGSSAMFSD--AFNNSLIIMDRY-----FPSLFPQLKLITSPLTTRSPKLNGAA 1260 Query: 2162 PSEVKHSSTVRDFTHHAIRGSTVRDPSYQPSLAHVVRHTSPAIYHSELNRLHPDFKGDAV 1983 PS T R P++ H+ H P Y + ++P Sbjct: 1261 PS----------------ASPTHRSPNF-----HLPPHI-PLSYDRDFVTVNPTLPDQGP 1298 Query: 1982 RSAVIVCGDGIDHLPRVSPHFIAETRLPYHSDMPSAM---PSQCSLSPPTFSAPVFEPVY 1812 + R+ HF+ +RLP H D+P A+ P S+ PP A PVY Sbjct: 1299 ET-------------RLDTHFLPPSRLPLHFDLPPAITPPPVSTSVDPPQAKA---SPVY 1342 Query: 1811 PGEDFETLASTFLPAHDPHLREIIFKGERSAQFPYLNQPFDLFLQPQTLIAAQHHGQKDS 1632 PGE F++LA+ FLPAHDP REI+ K + S QFP+ ++PF L QP +LI+A+H D Sbjct: 1343 PGEFFDSLAAFFLPAHDPSTREILHKDQSSNQFPWFDRPFSLSCQPSSLISAKHAPNHDP 1402 Query: 1631 TLLPASIPKRLRFRRNSTPYVISPKDQLLGELLFISLCKAYNRHPSSVEPFDEALFADCI 1452 TLLPASI KRLRFR + P+ I+ D +LG LF SLC+AY+R P+S PF+ LFA+CI Sbjct: 1403 TLLPASINKRLRFRPSEAPHQITADDVVLGLQLFHSLCRAYSRQPNSTVPFNPELFAECI 1462 Query: 1451 NLNEFAQLSSKTQTTIMANASRSDPDWRWSAVRIFSKSQHKTNEASIFGSWKACQTLALM 1272 +LNE+AQLSSKTQ+TI+ANASRSDPDWR + V+IF+K+QHK N+ SIFGSWKACQTLALM Sbjct: 1463 SLNEYAQLSSKTQSTIVANASRSDPDWRHTTVKIFAKAQHKVNDGSIFGSWKACQTLALM 1522 Query: 1271 HDAVVLLLGPVKKYQRLFDNRDRPANIYVHASHTPFQMSDWCRENLS-SCEHVANDYTAF 1095 HD V+L+LGPVKKYQR+FDN DRP++IY H TP Q+ DWC+E+L+ S +ANDYTAF Sbjct: 1523 HDYVILVLGPVKKYQRIFDNADRPSHIYSHCGKTPNQLRDWCQEHLTHSTPKIANDYTAF 1582 Query: 1094 DQSQHGEAVVLEIKKMRRLSIPEPLIQLHAYLKTNVTTQFGPLTCMRLTGEPGTYDDNTD 915 DQSQHGE+VVLE KM+RL+IP LIQLH +LKTNV+TQFGPLTCMRLTGEPGTYDDNTD Sbjct: 1583 DQSQHGESVVLEALKMKRLNIPSHLIQLHVHLKTNVSTQFGPLTCMRLTGEPGTYDDNTD 1642 Query: 914 YNLAVIHSQYLMASIPHMVSGDDSLIDRQPLPNPL-WITIGPMLHLRFKLEVTRYPLFCG 738 YNLAVI+SQY + S P MVSGDDSLID PLP W ++ LHLRFKLE+T +PLFCG Sbjct: 1643 YNLAVIYSQYDVGSCPIMVSGDDSLID-HPLPTRHDWPSVLKRLHLRFKLELTSHPLFCG 1701 Query: 737 YLVGPSGAVRSPITLFAKSLMALDDGSLDDKLASYLTEFSVGHSLGQEMWNLIPVEQVHY 558 Y VGP+G +R+P+ LF K ++A+DD +LDD+ SYLTEF+ GH LG+ +W+L+P V Y Sbjct: 1702 YYVGPAGCIRNPLALFCKLMIAVDDDALDDRRLSYLTEFTTGHLLGESLWHLLPETHVQY 1761 Query: 557 QAALFDFFCRKASREQKLVLKIGEVPDTIISTILSSARAIARPLYAYLSSSARKLLLKGS 378 Q+A FDFFCR+ + +K++L +++ I SS R + + + L + R + S Sbjct: 1762 QSACFDFFCRRCPKHEKMLLDDSTPTLSLLERITSSPRWLTKNVMYLLPAKLRLAITSLS 1821 Query: 377 KTYRPFDTEESLQFEGVLQHAV 312 +T ++ E + E L H V Sbjct: 1822 QTQSFPESIEVSRAESELLHYV 1843 Score = 337 bits (863), Expect = 5e-89 Identities = 215/581 (37%), Positives = 290/581 (49%), Gaps = 35/581 (6%) Frame = -1 Query: 5948 ESLSNTIHRDTVTSPLVEAVADPLRDSLEKYPYAVSPSLTSFLSKRGINISGYGAKTHPH 5769 ++L+ T HRD P++E+ D +R S++ YP+++ L L+ GI SG G HPH Sbjct: 8 DALAPTTHRDPSLHPILESTVDSIRSSIQTYPWSIPKELLPLLNSYGIPTSGLGTSHHPH 67 Query: 5768 PAHKNIENYILQDVWPNLIRNQSSVLFMKPSKFRKLEQKDSNFHELINYRLTPQDTTRYP 5589 AHK IE ++L W SSV+FMKPSKF KL Q +SNF EL NYRL P D+TRYP Sbjct: 68 AAHKTIETFLLCTHWSFQATTPSSVMFMKPSKFSKLAQVNSNFRELKNYRLHPNDSTRYP 127 Query: 5588 SSSTTLPAHSTVFMHDALMYYTPGDIADLFLSAPHLTQLYATLVVPPESSFTDTSFFPEL 5409 +S LP T+FMHDALMYY P I DLFL P+L +LYA+LVVPPE+ +D SFFP+L Sbjct: 128 FTSPDLPVFPTIFMHDALMYYHPSQIMDLFLQKPNLERLYASLVVPPEAHLSDQSFFPKL 187 Query: 5408 YNFHFHDTDLVYELEGNPSHHYIQPKSALDWLRTSTIRCSDLTLSISILESIGPVHHLLI 5229 Y + L Y EG+ + Y QP A WLR ++IR + LS++ILES GPVH LLI Sbjct: 188 YTYTTTRHTLHYVPEGHEAGSYNQPSDAHSWLRINSIRLGNHHLSVTILESWGPVHSLLI 247 Query: 5228 QRGLAP--------------------KHRENTTRDFDTPDCFLLPAPTSLSQNVRDRLVP 5109 QRG P + F PD LP T L Q +RDRLVP Sbjct: 248 QRGTPPPDPSLQAPSTLMASDLFRSYQEPRLDVVSFRIPDAIELPQATFLQQPLRDRLVP 307 Query: 5108 LAAYHSLRAYVMAVRTLRTTDPAGFVRTQSTKPEFAWVTAEAWDSLQNFALLTCNQRPAV 4929 A Y++L Y AVRTLRT+DPA FVR S+KP+ WVT+ AWD+LQ FALL RP V Sbjct: 308 RAVYNALFTYTRAVRTLRTSDPAAFVRMHSSKPDHDWVTSNAWDNLQTFALLNVPLRPNV 367 Query: 4928 SYLTFASSFARI-----KHWXXXXXXXXXXXXXXXXXAVSFTTVKVAHY---CSTRQIDS 4773 Y S A + +HW +SF T+ ++ S Sbjct: 368 VYHVLQSPIASLALYLRQHW--------RRLTATAVPILSFLTLLQRFLPLPIPLAEVKS 419 Query: 4772 LILFGKQIVRPSCPLN--SPFSLHQYFSRTAQLPPSLSTQLPRFELVTSPRIITKWSPCL 4599 + F +++ R P + F L Q+ ++ P + + P + K + L Sbjct: 420 ITAFRRELYRKKAPHHPLDVFHLQQHLRNYHSAISAVRPASPPHQRL--PHALQKAALLL 477 Query: 4598 AR----FLLSTPFFRTLTTQLNFLSKKCFFAKGFPHSRKLXXXXXXXXXILWAYRRFMGP 4431 R L +TPFFR+ + ++ + K F + + P Sbjct: 478 LRPISPLLTATPFFRSEQKSMLPNAELSWTLKRFALPWQASLVLLALSESSILLHKLFSP 537 Query: 4430 DAPQAMFDQYNGYFNPKPWKLRIAQGPTKCSR-GQFLPFCP 4311 QA D Y+ + +P + L+ + P R FLPF P Sbjct: 538 PTLQAQHDTYHRHLHPGSYSLQWERTPLSIPRTTAFLPFTP 578 >ref|NP_663297.1| replicase/papain-like protease [Turnip yellow mosaic virus] gi|62224|emb|CAA30322.1| unnamed protein product [Turnip yellow mosaic virus] Length = 1844 Score = 988 bits (2555), Expect = 0.0 Identities = 553/1162 (47%), Positives = 716/1162 (61%), Gaps = 16/1162 (1%) Frame = -1 Query: 3749 DPSGFGEVSTFAQLYPDDYVLGCAEFFCRKRHHGVSTAPFPTMPCLLDAVGSCLGVTPAE 3570 DP+ G V F +L+P Y A F R R + P PT+ CLL AV V+ Sbjct: 739 DPTAIGPVLPFEELHPRRYPENTATFLTRLRSLPSNHLPQPTLNCLLSAVSDQTKVSEEH 798 Query: 3569 LWSTLCHHLPDSLLQNPQITSCGLSTDHLTALSHFYQFKAFVTSDQEPIPHPYGVDSAPT 3390 LW +L LPDS L N + + GLST+HLTAL+H Y F+A V SD+ PI +G Sbjct: 799 LWESLQTILPDSQLSNEETNTLGLSTEHLTALAHLYNFQATVYSDRGPIL--FGPSDTIK 856 Query: 3389 TIRFSHTTGNPGHF-----FITSDPGAPPPPKXXXXXXXXXXXXXXLTTFRLNGELLPFQ 3225 I +HTTG P HF + S P A P +F+++G LPF Sbjct: 857 RIDITHTTGPPSHFSPGKRLLGSQPSAKGHPSDPLIRAMK--------SFKVSGNYLPFS 908 Query: 3224 TVHNYRANVKRAKNLISNMKNGFDGVMATVDPQHPNSA----KEKFVTTDGILDIAKSRS 3057 HN+ ++ AKNLISNMKNGFDGV++ +D KE+ + D LD ++ Sbjct: 909 EAHNHPTSISHAKNLISNMKNGFDGVLSLLDVSTGQRTGPXPKERIIQIDHYLDTNPGKT 968 Query: 3056 IKLIHIAGFPGCGKSYPIQRLLLTAPRARNFRISVPTAELRHEWKASMDLEPKNNWRIGT 2877 ++H AGF GCGK+YPIQ+LL T ++FR+S PT ELR EWK +M+L +WR T Sbjct: 969 TPVVHFAGFAGCGKTYPIQQLLKTK-LFKDFRVSCPTTELRTEWKTAMELHGSQSWRFNT 1027 Query: 2876 WEXXXXXXXXXLVVDEIYKMPRGYLDLAILMDPHLEMVIVLGDPLQGEYHSTHPQSSNHK 2697 WE LV+DEIYKMPRGYLDL+IL DP LE+VI+LGDPLQGEYHS SSNH+ Sbjct: 1028 WESSILKSSRILVIDEIYKMPRGYLDLSILADPALELVIILGDPLQGEYHSQSKDSSNHR 1087 Query: 2696 LSSEINHLRPYLDFYCAWTRRCPKLIADFFGVPTTSQEPGFCRPVNHLPMNCPILTNSHS 2517 L SE L PY+D YC W+ R P+ IA F + + + G V+ P+LTNSH+ Sbjct: 1088 LPSETLRLLPYIDMYCWWSYRIPQCIARLFQIHSFNAWQGVIGSVSTPHDQSPVLTNSHA 1147 Query: 2516 AALTLTEAHSRACTISASQGSTYSSPVVIHLDRHSSQLSNSMALVALTRSTKGVLFSGDQ 2337 ++LT R+CTIS+SQG T+ P +I LD ++ LS++ LVALTRS GV F Sbjct: 1148 SSLTFNSLGYRSCTISSSQGLTFCDPAIIVLDNYTKWLSSANGLVALTRSRSGVQFMXPS 1207 Query: 2336 SILQPGPHSAKLFSQLTQFQSSHSPDDRYPIQTHFIEQLRGVTLISTPLKSR--KLVGAC 2163 S + S+ +FS F +S DRY F + LI++PL +R KL GA Sbjct: 1208 SYVGGTNGSSAMFSD--AFNNSLIIMDRY-----FPSLFPQLKLITSPLTTRGPKLNGAT 1260 Query: 2162 PSEVKHSSTVRDFTHHAIRGSTVRDPSYQPSLAHVVRHTSPAIYHSELNRLHPDFKGDAV 1983 PS T R P++ H+ H P Y + ++P Sbjct: 1261 PS----------------ASPTHRSPNF-----HLPPHI-PLSYDRDFVTVNPTLPDQGP 1298 Query: 1982 RSAVIVCGDGIDHLPRVSPHFIAETRLPYHSDMPSAM---PSQCSLSPPTFSAPVFEPVY 1812 + R+ HF+ +RLP H D+P A+ P S+ PP A PVY Sbjct: 1299 ET-------------RLDTHFLPPSRLPLHFDLPPAITPPPVSTSVDPPQAKA---SPVY 1342 Query: 1811 PGEDFETLASTFLPAHDPHLREIIFKGERSAQFPYLNQPFDLFLQPQTLIAAQHHGQKDS 1632 PGE F++LA+ FLPAHDP REI+ K + S QFP+ ++PF L QP +LI+A+H D Sbjct: 1343 PGEFFDSLAAFFLPAHDPSTREILHKDQSSNQFPWFDRPFSLSCQPSSLISAKHAPNHDP 1402 Query: 1631 TLLPASIPKRLRFRRNSTPYVISPKDQLLGELLFISLCKAYNRHPSSVEPFDEALFADCI 1452 TLLPASI KRLRFR + +P+ I+ D +LG LF SLC+AY+R P+S PF+ LFA+CI Sbjct: 1403 TLLPASINKRLRFRPSDSPHQITADDVVLGLQLFHSLCRAYSRQPNSTVPFNPELFAECI 1462 Query: 1451 NLNEFAQLSSKTQTTIMANASRSDPDWRWSAVRIFSKSQHKTNEASIFGSWKACQTLALM 1272 +LNE+AQLSSKTQ+TI+ANASRSDPDWR + V+IF+K+QHK N+ SIFGSWKACQTLALM Sbjct: 1463 SLNEYAQLSSKTQSTIVANASRSDPDWRHTTVKIFAKAQHKVNDGSIFGSWKACQTLALM 1522 Query: 1271 HDAVVLLLGPVKKYQRLFDNRDRPANIYVHASHTPFQMSDWCRENLS-SCEHVANDYTAF 1095 HD V+L+LGPVKKYQR+FDN DRP NIY H TP Q+ DWC+E+L+ S +ANDYTAF Sbjct: 1523 HDYVILVLGPVKKYQRIFDNADRPPNIYSHCGKTPNQLRDWCQEHLTHSTPKIANDYTAF 1582 Query: 1094 DQSQHGEAVVLEIKKMRRLSIPEPLIQLHAYLKTNVTTQFGPLTCMRLTGEPGTYDDNTD 915 DQSQHGE+VVLE KM+RL+IP LIQLH +LKTNV+TQFGPLTCMRLTGEPGTYDDNTD Sbjct: 1583 DQSQHGESVVLEALKMKRLNIPSHLIQLHVHLKTNVSTQFGPLTCMRLTGEPGTYDDNTD 1642 Query: 914 YNLAVIHSQYLMASIPHMVSGDDSLIDRQPLPNPL-WITIGPMLHLRFKLEVTRYPLFCG 738 YNLAVI+SQY + S P MVSGDDSLID PLP W ++ LHLRFKLE+T +PLFCG Sbjct: 1643 YNLAVIYSQYDVGSCPIMVSGDDSLID-HPLPTRHDWPSVLKRLHLRFKLELTSHPLFCG 1701 Query: 737 YLVGPSGAVRSPITLFAKSLMALDDGSLDDKLASYLTEFSVGHSLGQEMWNLIPVEQVHY 558 Y VGP+G +R+P+ LF K ++A+DD +LDD+ SYLTEF+ GH LG+ +W+L+P V Y Sbjct: 1702 YYVGPAGCIRNPLALFCKLMIAVDDDALDDRRLSYLTEFTTGHLLGESLWHLLPETHVQY 1761 Query: 557 QAALFDFFCRKASREQKLVLKIGEVPDTIISTILSSARAIARPLYAYLSSSARKLLLKGS 378 Q+A FDFFCR+ R +K++L +++ I SS R + + L + R + S Sbjct: 1762 QSACFDFFCRRCPRHEKMLLDDSTPALSLLERITSSPRWLTKNAMYLLPAKLRLAITSLS 1821 Query: 377 KTYRPFDTEESLQFEGVLQHAV 312 +T ++ E E L H V Sbjct: 1822 QTQSFPESIEVSHAESELLHYV 1843 Score = 333 bits (855), Expect = 5e-88 Identities = 215/582 (36%), Positives = 291/582 (50%), Gaps = 36/582 (6%) Frame = -1 Query: 5948 ESLSNTIHRDTVTSPLVEAVADPLRDSLEKYPYAVSPSLTSFLSKRGINISGYGAKTHPH 5769 ++L+ T HRD P++E+ D +R S++ YP+++ L L+ GI SG G HPH Sbjct: 8 DALAPTTHRDPSLHPILESTVDSIRSSIQTYPWSIPKELLPLLNSYGIPTSGLGTSHHPH 67 Query: 5768 PAHKNIENYILQDVWPNLIRNQSSVLFMKPSKFRKLEQKDSNFHELINYRLTPQDTTRYP 5589 AHK IE ++L W SSV+FMKPSKF KL Q +SNF EL NYRL P D+TRYP Sbjct: 68 AAHKTIETFLLCTHWSFQATTPSSVMFMKPSKFNKLAQVNSNFRELKNYRLHPNDSTRYP 127 Query: 5588 SSSTTLPAHSTVFMHDALMYYTPGDIADLFLSAPHLTQLYATLVVPPESSFTDTSFFPEL 5409 +S LP T+FMHDALMYY P I DLFL P+L +LYA+LVVPPE+ +D SF+P+L Sbjct: 128 FTSPDLPVFPTIFMHDALMYYHPSQIMDLFLRKPNLERLYASLVVPPEAHLSDQSFYPKL 187 Query: 5408 YNFHFHDTDLVYELEGNPSHHYIQPKSALDWLRTSTIRCSDLTLSISILESIGPVHHLLI 5229 Y + L Y EG+ + Y QP A WLR ++IR + LS++ILES GPVH LLI Sbjct: 188 YTYTTTRHTLHYVPEGHEAGSYNQPSDAHSWLRINSIRLGNHHLSVTILESWGPVHSLLI 247 Query: 5228 QRGLAP--------------------KHRENTTRDFDTPDCFLLPAPTSLSQNVRDRLVP 5109 QRG P + F PD LP T L Q +RDRLVP Sbjct: 248 QRGTPPPDPSLQAPPTLMXSDLFRSYQEPRLDVVSFRIPDAIELPQATFLQQPLRDRLVP 307 Query: 5108 LAAYHSLRAYVMAVRTLRTTDPAGFVRTQSTKPEFAWVTAEAWDSLQNFALLTCNQRPAV 4929 A Y++L Y AVRTLRT+DPA FVR S+KP+ WVT+ AWD+LQ FALL RP V Sbjct: 308 RAVYNALFTYTRAVRTLRTSDPAAFVRMHSSKPDHDWVTSNAWDNLQTFALLNVPLRPNV 367 Query: 4928 SYLTFASSFARI-----KHWXXXXXXXXXXXXXXXXXAVSFTTVKVAHY---CSTRQIDS 4773 Y S A + +HW +SF T+ ++ S Sbjct: 368 VYHVLQSPIASLSLYLRQHW--------RRLTATAVPILSFLTLLQRFLPLPIPLAEVKS 419 Query: 4772 LILFGKQIVR---PSCPLNSPFSLHQYFSRTAQLPPSLSTQLPRFELVTSPRIITKWSPC 4602 + F +++ R P PL+ H+ + + + P +L P + K + Sbjct: 420 ITAFRRELYRKKEPHHPLDVFHLQHRVRNYHSAISAVRPASPPHQKL---PHALQKAALL 476 Query: 4601 LAR----FLLSTPFFRTLTTQLNFLSKKCFFAKGFPHSRKLXXXXXXXXXILWAYRRFMG 4434 L R L +TPFFR+ + ++ + K F + + Sbjct: 477 LLRPISPLLTATPFFRSEQKSMLPNAELSWTLKRFALPWQASLVLLALSESSILLHKLFS 536 Query: 4433 PDAPQAMFDQYNGYFNPKPWKLRIAQGPTKCSR-GQFLPFCP 4311 P QA D Y+ + +P + L+ + P R FLPF P Sbjct: 537 PPTLQAQHDTYHRHLHPGSYSLQWERTPLSIPRTTAFLPFTP 578 >ref|YP_002048673.1| replicase-associated protein RP [Diascia yellow mottle virus] gi|194295001|gb|ACF40325.1| replicase-associated protein RP [Diascia yellow mottle virus] Length = 1790 Score = 988 bits (2554), Expect = 0.0 Identities = 550/1141 (48%), Positives = 701/1141 (61%), Gaps = 12/1141 (1%) Frame = -1 Query: 3764 STLILDPSGFGEVSTFAQLYPDDYVLGCAEFFCRKRHHGVSTAPFPTMPCLLDAVGSCLG 3585 S L+ DPS G V F L+P Y F R+R S+AP P CLL ++ LG Sbjct: 684 SDLLSDPSCVGPVVEFECLFPGVYHNSNGTFLTRQRAQASSSAPLPAKRCLLTSISPQLG 743 Query: 3584 VTPAELWSTLCHHLPDSLLQNPQITSCGLSTDHLTALSHFYQFKAFVTSDQEPIPHPYGV 3405 V A LW+ LC LPDSLL NP+I + GLSTDHLTAL+ F+ + + +P Y Sbjct: 744 VPEATLWNYLCEMLPDSLLDNPEIRNYGLSTDHLTALASRLNFECVIHTGHTTLP--YSC 801 Query: 3404 DSAPTTIRFSHTTGNPGHF-----FITSDPGAPPPPKXXXXXXXXXXXXXXLTTFRLNGE 3240 A T ++ + G P HF S PG+ P F+LNG+ Sbjct: 802 VGASTRVQITFHPGPPKHFSPNIRLSASAPGSNPSKSPLVRAALR---------FQLNGD 852 Query: 3239 LLPFQTVHNYRANVKRAKNLISNMKNGFDGVMATVDPQHPNSAKEKFVTTDGILDIAKSR 3060 LPF H ++ +V AKNL+SNMKNGFDG+ + + S K+K + D +D+A R Sbjct: 853 FLPFMNSHKHKVSVPHAKNLVSNMKNGFDGITSQLSESSGRSPKQKLLELDATIDVAFPR 912 Query: 3059 SIKLIHIAGFPGCGKSYPIQRLLLTAPRARNFRISVPTAELRHEWKASMDLEPKNNWRIG 2880 + +IHIAGFPGCGKS+P+Q+LL T R+FR+SVPT ELR EWK+ M L WR+ Sbjct: 913 EVDVIHIAGFPGCGKSHPVQKLLQTKA-FRHFRLSVPTNELRTEWKSDMSLPESEIWRLC 971 Query: 2879 TWEXXXXXXXXXLVVDEIYKMPRGYLDLAILMDPHLEMVIVLGDPLQGEYHSTHPQSSNH 2700 TWE LV+DEIYK+PRGYLDLA+L DP +VI+LGDPLQGEYHS+HP SSN+ Sbjct: 972 TWETSLFKSSSILVIDEIYKLPRGYLDLALLADPSTSLVILLGDPLQGEYHSSHPSSSNN 1031 Query: 2699 KLSSEINHLRPYLDFYCAWTRRCPKLIADFFGVPTTSQEPGFCRPVNHLPMNCPILTNSH 2520 +L SE + L Y+D YC WT RCP+ +AD FGV T + E GF R P P L NS Sbjct: 1032 RLESETSRLSKYIDCYCWWTYRCPRAVADLFGVKTFNTEQGFIRGELSHPQGLPNLVNSI 1091 Query: 2519 SAALTLTEAHSRACTISASQGSTYSSPVVIHLDRHSSQLSNSMALVALTRSTKGVLFSGD 2340 + A T+ A TIS+SQG TYSSP I LDRHS+ LS VALTRS KG++F G+ Sbjct: 1092 ATATTMQNLGHHALTISSSQGMTYSSPTTILLDRHSTLLSPQNCFVALTRSRKGIIFIGN 1151 Query: 2339 QSILQPGPHSAKLFSQLTQFQSSHSPDD---RYPIQTHFIEQLRGVTLISTPLKSRK--L 2175 ++ +F+Q + SP D +P+ + LI P+KSR+ L Sbjct: 1152 MYQASGYFGTSYMFTQAL----TGSPVDLMCAFPLY-------HTLPLIFDPIKSRRQRL 1200 Query: 2174 VGACPSEVKHS-STVRDFTHHAIRGSTVRDPSYQPSLAHVVRHTSPAIYHSELNRLHPDF 1998 V P + S S +R++ R P + P+ D+ Sbjct: 1201 VAGDPLPISTSESAIRNYG---------RLPPHIPT----------------------DY 1229 Query: 1997 KGDAVRSAVIVCGDGIDH-LPRVSPHFIAETRLPYHSDMPSAMPSQCSLSPPTFSAPVFE 1821 D S+ +V +G D LP + + +RLP H A PS+ LS S Sbjct: 1230 AKDCFVSSQVVFSEGEDRTLPTLH---LPPSRLPLHLLTEPAAPSEVLLSETEPSKSPIT 1286 Query: 1820 PVYPGEDFETLASTFLPAHDPHLREIIFKGERSAQFPYLNQPFDLFLQPQTLIAAQHHGQ 1641 GE FE LA+ FLPAHDP L+EIIF + S+QFP+L+ PF+L QP +L+AA H Sbjct: 1287 LALLGESFEELAAHFLPAHDPELKEIIFADQSSSQFPFLDVPFELSCQPSSLLAASHRPA 1346 Query: 1640 KDSTLLPASIPKRLRFRRNSTPYVISPKDQLLGELLFISLCKAYNRHPSSVEPFDEALFA 1461 D TLL +SI KRLRFR + PY IS D LLG+ LF SLC+A+NR P V PFD LFA Sbjct: 1347 SDPTLLVSSIKKRLRFRPSDCPYFISSNDILLGQHLFNSLCRAFNRSPLEVIPFDPVLFA 1406 Query: 1460 DCINLNEFAQLSSKTQTTIMANASRSDPDWRWSAVRIFSKSQHKTNEASIFGSWKACQTL 1281 +CI LNE+AQLSSKT+ TI+ANASRSDPDWR++AVRIF+K+QHK N+ SIFGSWKACQTL Sbjct: 1407 ECIALNEYAQLSSKTKATIVANASRSDPDWRFTAVRIFAKAQHKVNDGSIFGSWKACQTL 1466 Query: 1280 ALMHDAVVLLLGPVKKYQRLFDNRDRPANIYVHASHTPFQMSDWCRENLSSCEHVANDYT 1101 ALMHD V++ LGPVKKYQR+ D++DRP++IY H TP Q+S WC++ + NDYT Sbjct: 1467 ALMHDYVIMTLGPVKKYQRILDHQDRPSHIYTHCGKTPAQLSSWCQKFSLDGPSLCNDYT 1526 Query: 1100 AFDQSQHGEAVVLEIKKMRRLSIPEPLIQLHAYLKTNVTTQFGPLTCMRLTGEPGTYDDN 921 +FDQSQHGEAVVLE KMRR SIP+ LIQLH +LKTN++TQFGPLTCMRLTGEPGTYDDN Sbjct: 1527 SFDQSQHGEAVVLECLKMRRCSIPDNLIQLHLHLKTNISTQFGPLTCMRLTGEPGTYDDN 1586 Query: 920 TDYNLAVIHSQYLMASIPHMVSGDDSLIDRQPLPNPLWITIGPMLHLRFKLEVTRYPLFC 741 TDYNLAVI+SQY M + P MVSGDDS+I P +P W + +LHLRFK E T PLFC Sbjct: 1587 TDYNLAVIYSQYQMGATPCMVSGDDSVIFANPPIHPTWPAVENLLHLRFKTESTTQPLFC 1646 Query: 740 GYLVGPSGAVRSPITLFAKSLMALDDGSLDDKLASYLTEFSVGHSLGQEMWNLIPVEQVH 561 GY VGPSG R+P+ LFAK ++ D G+LDD L+SYL E+S+GH LG +L+P Sbjct: 1647 GYYVGPSGCCRNPLALFAKLMITTDKGNLDDTLSSYLYEYSIGHRLGDACLSLLPSHLHS 1706 Query: 560 YQAALFDFFCRKASREQKLVLKIGEVPDTIISTILSSARAIARPLYAYLSSSARKLLLKG 381 YQ+A FDFFCRKAS QK +L E +++ + SS+ + PL A L + + + LL+ Sbjct: 1707 YQSACFDFFCRKASPLQKTLLSFEEPSPSLLKKLASSSAWASGPLLAQLDNDSLQSLLER 1766 Query: 380 S 378 S Sbjct: 1767 S 1767 Score = 336 bits (862), Expect = 7e-89 Identities = 175/353 (49%), Positives = 225/353 (63%), Gaps = 6/353 (1%) Frame = -1 Query: 5948 ESLSNTIHRDTVTSPLVEAVADPLRDSLEKYPYAVSPSLTSFLSKRGINISGYGAKTHPH 5769 E+LS T HRD+ +P++ PL+ SL+ +P+ ++ FL+ GI +SG+G HPH Sbjct: 8 EALSTTSHRDSSLNPVLYHSVSPLQRSLDLFPWIITRDALPFLNSCGIPVSGFGTTPHPH 67 Query: 5768 PAHKNIENYILQDVWPNLIRNQSSVLFMKPSKFRKLEQKDSNFHELINYRLTPQDTTRYP 5589 HK IE ++L W +L SSV+FMKPSKFRKL + NF EL N+RLTP DT RYP Sbjct: 68 AVHKAIETFLLFSHWSSLASTLSSVMFMKPSKFRKLAAINPNFDELTNFRLTPADTVRYP 127 Query: 5588 SSSTTLPAHSTVFMHDALMYYTPGDIADLFLSAPHLTQLYATLVVPPESSFTDTSFFPEL 5409 ++S++LP H VFMHDALMY+TP I DLF P L +L+ +LVVPPESSFTD S FP + Sbjct: 128 TTSSSLPQHEIVFMHDALMYFTPHQIVDLFERCPLLNRLHCSLVVPPESSFTDLSLFPTI 187 Query: 5408 YNFHFHDTDLVYELEGNPSHHYIQPKSALDWLRTSTIRCSDLTLSISILESIGPVHHLLI 5229 Y + + +L Y EG+ + Y QP+SA+ WL+ I LS++ILES GPVH +LI Sbjct: 188 YTYQLNSNNLHYTPEGHHAGSYDQPRSAIRWLKLRRITSPFFNLSVTILESWGPVHSILI 247 Query: 5228 QRG------LAPKHRENTTRDFDTPDCFLLPAPTSLSQNVRDRLVPLAAYHSLRAYVMAV 5067 QRG LAP H F P +LP T L+Q +R R+VP Y +L Y AV Sbjct: 248 QRGLPISDSLAPPH-----ASFKVPQARVLPEATFLNQPLRHRMVPSEVYDALFTYTRAV 302 Query: 5066 RTLRTTDPAGFVRTQSTKPEFAWVTAEAWDSLQNFALLTCNQRPAVSYLTFAS 4908 RTLRT+DPAGFVRT S KP+ AWVT +AWD+LQ +ALL RP V Y F S Sbjct: 303 RTLRTSDPAGFVRTHSNKPKHAWVTPQAWDNLQTYALLNAPVRPRVVYNFFLS 355 >sp|P20128.1|POLR_TYMVA RecName: Full=RNA replicase polyprotein gi|332246|gb|AAA46592.1| replicase polyprotein [Turnip yellow mosaic virus] Length = 1844 Score = 986 bits (2548), Expect = 0.0 Identities = 548/1162 (47%), Positives = 718/1162 (61%), Gaps = 16/1162 (1%) Frame = -1 Query: 3749 DPSGFGEVSTFAQLYPDDYVLGCAEFFCRKRHHGVSTAPFPTMPCLLDAVGSCLGVTPAE 3570 DP+ G V F +L+P Y A F R R + P PT+ CLL AV V+ Sbjct: 739 DPTAIGPVLPFEELHPRRYPENTATFLTRLRSLPSNHLPQPTLNCLLSAVSDQTKVSEDH 798 Query: 3569 LWSTLCHHLPDSLLQNPQITSCGLSTDHLTALSHFYQFKAFVTSDQEPIPHPYGVDSAPT 3390 LW +L LPDS L+N +I S GLST+HLTAL+H Y F+A + SD+ PI +G Sbjct: 799 LWESLQTILPDSQLRNEEINSLGLSTEHLTALAHLYNFQATIYSDRGPIL--FGPSDTIK 856 Query: 3389 TIRFSHTTGNPGHF-----FITSDPGAPPPPKXXXXXXXXXXXXXXLTTFRLNGELLPFQ 3225 I +HTTG P HF + S P A P +F+++G LPF Sbjct: 857 RIDITHTTGPPSHFSPGKRLLGSQPSAKGHPSDSLIRAMK--------SFKVSGNYLPFS 908 Query: 3224 TVHNYRANVKRAKNLISNMKNGFDGVMATVDPQHPN----SAKEKFVTTDGILDIAKSRS 3057 HN+ ++ AKNL+SNMKNGFDG+++ +D + K+ + D LD ++ Sbjct: 909 EAHNHPTSISHAKNLVSNMKNGFDGILSLLDVSTGQRTGPTPKDAIIQIDHYLDTNPGKT 968 Query: 3056 IKLIHIAGFPGCGKSYPIQRLLLTAPRARNFRISVPTAELRHEWKASMDLEPKNNWRIGT 2877 ++H AGF GCGK+YPIQ+LL T ++FR+S PT ELR EWK +M+L +WR T Sbjct: 969 TPVVHFAGFAGCGKTYPIQQLLKTK-LFKDFRVSCPTTELRTEWKTAMELHGSQSWRFNT 1027 Query: 2876 WEXXXXXXXXXLVVDEIYKMPRGYLDLAILMDPHLEMVIVLGDPLQGEYHSTHPQSSNHK 2697 WE LV+DEIYKMPRGYLDL+IL DP LE+VI+LGDPLQGEYHS SSNH+ Sbjct: 1028 WESSILKSSRILVIDEIYKMPRGYLDLSILADPALELVIILGDPLQGEYHSQSKDSSNHR 1087 Query: 2696 LSSEINHLRPYLDFYCAWTRRCPKLIADFFGVPTTSQEPGFCRPVNHLPMNCPILTNSHS 2517 L SE L PY+D YC W+ R P+ IA F + + + G V+ P+LTNSH+ Sbjct: 1088 LPSETLRLLPYIDMYCWWSYRIPQCIARLFQIHSFNAWQGIIGSVSTPQDQSPVLTNSHA 1147 Query: 2516 AALTLTEAHSRACTISASQGSTYSSPVVIHLDRHSSQLSNSMALVALTRSTKGVLFSGDQ 2337 ++LT R+CTIS+SQG T+ P +I LD ++ LS++ LVALTRS GV F G Sbjct: 1148 SSLTFNSLGYRSCTISSSQGLTFCDPAIIVLDNYTKWLSSANGLVALTRSRSGVQFMGPS 1207 Query: 2336 SILQPGPHSAKLFSQLTQFQSSHSPDDRYPIQTHFIEQLRGVTLISTPLKSR--KLVGAC 2163 S + S+ +FS F +S DRY F + LI++PL +R KL GA Sbjct: 1208 SYVGGTNGSSAMFSD--AFNNSLIIMDRY-----FPSLFPQLKLITSPLTTRSPKLNGAT 1260 Query: 2162 PSEVKHSSTVRDFTHHAIRGSTVRDPSYQPSLAHVVRHTSPAIYHSELNRLHPDFKGDAV 1983 PS T R P++ H+ H P Y + ++P Sbjct: 1261 PS----------------ASPTHRSPNF-----HLPPHI-PLSYDRDFVTVNPTLPDQGP 1298 Query: 1982 RSAVIVCGDGIDHLPRVSPHFIAETRLPYHSDMPSAM---PSQCSLSPPTFSAPVFEPVY 1812 + R+ HF+ +RLP H D+P A+ P S+ PP A PVY Sbjct: 1299 ET-------------RLDTHFLPPSRLPLHFDLPPAITPPPISTSVDPPQAKA---SPVY 1342 Query: 1811 PGEDFETLASTFLPAHDPHLREIIFKGERSAQFPYLNQPFDLFLQPQTLIAAQHHGQKDS 1632 PGE F++LA+ FLPAHDP RE++ K + S QFP+ ++PF L QP +LI+A+H D Sbjct: 1343 PGEFFDSLAAFFLPAHDPSTREVLHKDQSSNQFPWFDRPFSLSCQPSSLISAKHAPNHDP 1402 Query: 1631 TLLPASIPKRLRFRRNSTPYVISPKDQLLGELLFISLCKAYNRHPSSVEPFDEALFADCI 1452 TLLPASI KRLRFR + P+ I+ D +LG LF SLC+AY+R P+ PF+ LFA+CI Sbjct: 1403 TLLPASINKRLRFRPSEAPHQITADDVVLGLQLFHSLCRAYSRQPNITVPFNPELFAECI 1462 Query: 1451 NLNEFAQLSSKTQTTIMANASRSDPDWRWSAVRIFSKSQHKTNEASIFGSWKACQTLALM 1272 +LNE+AQLSSKTQ+TI+ANASRSDPDWR + V+IF+K+QHK N+ SIFGSWKACQTLALM Sbjct: 1463 SLNEYAQLSSKTQSTIVANASRSDPDWRHTTVKIFAKAQHKVNDGSIFGSWKACQTLALM 1522 Query: 1271 HDAVVLLLGPVKKYQRLFDNRDRPANIYVHASHTPFQMSDWCRENLS-SCEHVANDYTAF 1095 HD V+L+LGPVKKYQR+FDN DRP++IY H TP Q+ DWC+E+L+ S +ANDYTAF Sbjct: 1523 HDYVILVLGPVKKYQRIFDNVDRPSHIYSHCGKTPNQLRDWCQEHLTHSTPKIANDYTAF 1582 Query: 1094 DQSQHGEAVVLEIKKMRRLSIPEPLIQLHAYLKTNVTTQFGPLTCMRLTGEPGTYDDNTD 915 DQSQHGE+VVLE KM+RL+IP LIQLH +LKTNV+TQFGPLTCMRLTGEPGTYDDNTD Sbjct: 1583 DQSQHGESVVLEALKMKRLNIPSHLIQLHVHLKTNVSTQFGPLTCMRLTGEPGTYDDNTD 1642 Query: 914 YNLAVIHSQYLMASIPHMVSGDDSLIDRQPLPNPL-WITIGPMLHLRFKLEVTRYPLFCG 738 YNLAVI+SQY + S P MVSGDDSLID PLP W ++ LHLRFKLE+T +PLFCG Sbjct: 1643 YNLAVIYSQYDVGSCPIMVSGDDSLID-HPLPTRHDWPSVLKRLHLRFKLELTSHPLFCG 1701 Query: 737 YLVGPSGAVRSPITLFAKSLMALDDGSLDDKLASYLTEFSVGHSLGQEMWNLIPVEQVHY 558 Y VGP+G +R+P+ LF K ++A+DD +LDD+ SYLTEF+ GH LG+ +W+L+P V Y Sbjct: 1702 YYVGPAGCIRNPLALFCKLMIAVDDDALDDRRLSYLTEFTTGHLLGESLWHLLPETHVQY 1761 Query: 557 QAALFDFFCRKASREQKLVLKIGEVPDTIISTILSSARAIARPLYAYLSSSARKLLLKGS 378 Q+A FDFFCR+ + +K++L +++ I SS R + + L + R + S Sbjct: 1762 QSACFDFFCRRCPKHEKMLLDDSTPTLSLLERITSSPRWLTKNAMYLLPAKLRLAITSLS 1821 Query: 377 KTYRPFDTEESLQFEGVLQHAV 312 +T ++ E E L H V Sbjct: 1822 QTQSFPESIEVSHAESELLHYV 1843 Score = 337 bits (864), Expect = 4e-89 Identities = 215/581 (37%), Positives = 290/581 (49%), Gaps = 35/581 (6%) Frame = -1 Query: 5948 ESLSNTIHRDTVTSPLVEAVADPLRDSLEKYPYAVSPSLTSFLSKRGINISGYGAKTHPH 5769 ++L+ T HRD P++E+ D +R S++ YP+++ L L+ GI SG G HPH Sbjct: 8 DALAPTTHRDPSLHPILESTVDSIRSSIQTYPWSIPKELLPLLNSYGIPTSGLGTSHHPH 67 Query: 5768 PAHKNIENYILQDVWPNLIRNQSSVLFMKPSKFRKLEQKDSNFHELINYRLTPQDTTRYP 5589 AHK IE ++L W SSV+FMKPSKF KL Q +SNF EL NYRL P D+TRYP Sbjct: 68 AAHKTIETFLLCTHWSFQATTPSSVMFMKPSKFNKLAQVNSNFRELKNYRLHPNDSTRYP 127 Query: 5588 SSSTTLPAHSTVFMHDALMYYTPGDIADLFLSAPHLTQLYATLVVPPESSFTDTSFFPEL 5409 +S LP T+FMHDALMYY P I DLFL P+L +LYA+LVVPPE+ +D SFFP+L Sbjct: 128 FTSPDLPVFPTIFMHDALMYYHPSQIMDLFLQKPNLERLYASLVVPPEAHLSDQSFFPKL 187 Query: 5408 YNFHFHDTDLVYELEGNPSHHYIQPKSALDWLRTSTIRCSDLTLSISILESIGPVHHLLI 5229 Y + L Y EG+ + Y QP A WLR ++IR + LS++ILES GPVH LLI Sbjct: 188 YTYTTTRHTLHYVPEGHEAGSYNQPSDAHSWLRINSIRLGNHHLSVTILESWGPVHSLLI 247 Query: 5228 QRGLAP--------------------KHRENTTRDFDTPDCFLLPAPTSLSQNVRDRLVP 5109 QRG P + F PD LP T L Q +RDRLVP Sbjct: 248 QRGTPPPDPSLQAPSTPMASDLFRSYQEPRLDVVSFRIPDAIELPQATFLQQPLRDRLVP 307 Query: 5108 LAAYHSLRAYVMAVRTLRTTDPAGFVRTQSTKPEFAWVTAEAWDSLQNFALLTCNQRPAV 4929 A Y++L Y AVRTLRT+DPA FVR S+KP+ WVT+ AWD+LQ FALL RP V Sbjct: 308 RAVYNALFTYTRAVRTLRTSDPAAFVRMHSSKPDHDWVTSNAWDNLQTFALLNVPLRPNV 367 Query: 4928 SYLTFASSFARI-----KHWXXXXXXXXXXXXXXXXXAVSFTTVKVAHY---CSTRQIDS 4773 Y S A + +HW +SF T+ ++ S Sbjct: 368 VYHVLQSPIASLALYLRQHW--------RRLTATAVPILSFLTLLQRFLPLPIPLAEVKS 419 Query: 4772 LILFGKQIVRPSCPLN--SPFSLHQYFSRTAQLPPSLSTQLPRFELVTSPRIITKWSPCL 4599 + F +++ R P + F L Q+ ++ P + + P + K + L Sbjct: 420 ITAFRRELYRKKAPHHPLDVFHLQQHLRNHHSAISAVRPASPPHQRL--PHALQKAALLL 477 Query: 4598 AR----FLLSTPFFRTLTTQLNFLSKKCFFAKGFPHSRKLXXXXXXXXXILWAYRRFMGP 4431 R L +TPFFR+ + ++ + K F + + P Sbjct: 478 LRPISPLLTATPFFRSEQKSMLPNAELSWTLKRFALPWQASLVLLSLSESSVLLHKLFSP 537 Query: 4430 DAPQAMFDQYNGYFNPKPWKLRIAQGPTKCSR-GQFLPFCP 4311 QA D Y+ + +P + L+ + P R FLPF P Sbjct: 538 PTLQAQHDTYHRHLHPGSYSLQWERTPLSIPRTTAFLPFTP 578 >ref|YP_007517180.1| viral replication protein [Andean potato latent virus] gi|452883301|gb|AGG15964.1| viral replication protein [Andean potato latent virus] Length = 1831 Score = 982 bits (2538), Expect = 0.0 Identities = 538/1145 (46%), Positives = 710/1145 (62%), Gaps = 11/1145 (0%) Frame = -1 Query: 3758 LILDPSGFGEVSTFAQLYPDDYVLGCAEFFCRKRHHGVSTAPFPTMPCLLDAVGSCLGVT 3579 L+ DP+ G+V F +P Y A F R R S P P + CLL+ Sbjct: 717 LMADPTCAGDVIPFHNAFPGLYFSNTASFPTRIRILPSSNLPVPALNCLLETFSQLTHYP 776 Query: 3578 PAELWSTLCHHLPDSLLQNPQITSCGLSTDHLTALSHFYQFKAFVTSDQEPIPHPYGVDS 3399 LW +LC LPD LL N +I + GLSTD LTAL Y + + + HPYG+ + Sbjct: 777 VLSLWQSLCSMLPDCLLDNEEIRTVGLSTDLLTALCFTYHIQCILHTPSGN--HPYGMPA 834 Query: 3398 APTTIRFSHTTGNPGHF-----FITSDPGAPPPPKXXXXXXXXXXXXXXLTTFRLNGELL 3234 + T+I + G P HF FI S PG+ P + F+ NG L Sbjct: 835 SSTSIEIDYLPGPPRHFSPHNRFIASAPGSNPSSEPLVREALR---------FKHNGHFL 885 Query: 3233 PFQTVHNYRANVKRAKNLISNMKNGFDGVMATVDPQHPNSA--KEKFVTTDGILDIAKSR 3060 PF H + +++ AKNLISNMKNGFDG+M ++ +S K++ +T D I D+A+ R Sbjct: 886 PFHQAHLHSVSLQHAKNLISNMKNGFDGIMHSISTSSSSSPSPKQQILTLDSICDVAQPR 945 Query: 3059 SIKLIHIAGFPGCGKSYPIQRLLLTAPRARNFRISVPTAELRHEWKASMDLEPKNNWRIG 2880 ++ +IHIAGF GCGK++PIQ+LL + P ++FRIS PT ELR EWK MD P N WR Sbjct: 946 TVPVIHIAGFAGCGKTHPIQKLLASKP-FKDFRISTPTNELRSEWKRDMDPSPSNLWRFS 1004 Query: 2879 TWEXXXXXXXXXLVVDEIYKMPRGYLDLAILMDPHLEMVIVLGDPLQGEYHSTHPQSSNH 2700 TWE L++DE+YK+PRGYLDL+IL DP+L++V +LGDPLQGEYHST+P SSN Sbjct: 1005 TWESSLFKHSSVLIIDEVYKLPRGYLDLSILADPNLKLVFILGDPLQGEYHSTNPHSSNI 1064 Query: 2699 KLSSEINHLRPYLDFYCAWTRRCPKLIADFFGVPTTSQEPGFCRPVNHLPMNCPILTNSH 2520 +L SEI+ R Y+D YC WT R PKL+A+ F +PT S E G V+ P L NS Sbjct: 1065 RLPSEIDRFRRYIDCYCWWTYRLPKLVAELFQIPTFSSEQGSIIAVSSHPPGSKNLVNST 1124 Query: 2519 SAALTLTEAHSRACTISASQGSTYSSPVVIHLDRHSSQLSNSMALVALTRSTKGVLFSGD 2340 S A +L + A TIS+SQG T+ I LDRH++ LS + LVA+TRS KG F G+ Sbjct: 1125 STATSLQQMGHHAITISSSQGITFPEINTILLDRHTNLLSPNNCLVAMTRSRKGFAFVGN 1184 Query: 2339 QSILQPGPHSAKLFSQLTQFQSSHSPDDRYPI-QTHFIEQLRGVTLISTPLKSRKLVGAC 2163 + ++ +FSQ R PI + + L+ P+ +R L Sbjct: 1185 LHLASNSFGTSYMFSQALA---------RQPINMANCFHSFHQLLLLHHPITTRNL---- 1231 Query: 2162 PSEVKHSSTVRDFTHHAIRGSTVRDPSYQPSLAHVVRHTSPAIYHSELNRLHPDFKGDAV 1983 H ST+ + + ST S P + I H+E D + Sbjct: 1232 RFVAGHQSTLPNVHKAHQKLSTSGKLSLPPHI---------PIDHAE----------DFI 1272 Query: 1982 RSAVIVCGDGIDHLPRVSPHFIAETRLPYHSDMPSAMPSQCSLSPP--TFSAPVFEPVYP 1809 + +V GD ID PR+ + + TRLP H+++ PS S P F+ P F Sbjct: 1273 ITNPVVFGDAID--PRLPTNHLPPTRLPLHTELLGTNPSSTDSSSPDLLFNTP-FSLGLS 1329 Query: 1808 GEDFETLASTFLPAHDPHLREIIFKGERSAQFPYLNQPFDLFLQPQTLIAAQHHGQKDST 1629 GE FE LA+ FLPAHDP L+EI++ + S QFP+L++PF L QP +LIAA H +DST Sbjct: 1330 GETFENLAAHFLPAHDPSLKEILYHDQSSLQFPWLDRPFSLSCQPSSLIAATHSPSQDST 1389 Query: 1628 LLPASIPKRLRFRRNSTPYVISPKDQLLGELLFISLCKAYNRHPSSVEPFDEALFADCIN 1449 LLPASI KRLRFR + PY I+ DQLLG+ LF SLCKAY R P S PF+ LFA+CI+ Sbjct: 1390 LLPASIKKRLRFRESDQPYQITANDQLLGQHLFSSLCKAYGRSPLSSVPFNPVLFAECIS 1449 Query: 1448 LNEFAQLSSKTQTTIMANASRSDPDWRWSAVRIFSKSQHKTNEASIFGSWKACQTLALMH 1269 LNE+AQLSSKT+ TI+ANA RSDPDWR + V+IF+K+QHK N+ SIFGSWKACQTLALMH Sbjct: 1450 LNEYAQLSSKTRATIVANAQRSDPDWRHTTVKIFAKAQHKVNDGSIFGSWKACQTLALMH 1509 Query: 1268 DAVVLLLGPVKKYQRLFDNRDRPANIYVHASHTPFQMSDWCRENLSSCEHVANDYTAFDQ 1089 D ++L+LGPVKKYQR+ D++DRP +Y+H HTP Q+S WC+ +LS ++ANDYT+FDQ Sbjct: 1510 DYIILILGPVKKYQRVIDSKDRPPQLYIHCGHTPHQLSSWCQTHLSGQTYLANDYTSFDQ 1569 Query: 1088 SQHGEAVVLEIKKMRRLSIPEPLIQLHAYLKTNVTTQFGPLTCMRLTGEPGTYDDNTDYN 909 SQHGEAVVLE+ KM+RL+ P + LH +LKTNV TQFGPLTCMRLTGEPGTYDDN+DYN Sbjct: 1570 SQHGEAVVLELLKMQRLNFPSFFLDLHLHLKTNVQTQFGPLTCMRLTGEPGTYDDNSDYN 1629 Query: 908 LAVIHSQYLMASIPHMVSGDDSLIDRQPLPNPLWITIGPMLHLRFKLEVTRYPLFCGYLV 729 LAVI S+YL+ S P M+SGDDS+I P +P W +I P+LHL+FK E +PLFCGY V Sbjct: 1630 LAVIFSKYLIHSHPIMISGDDSVICGNPSIHPSWSSIEPILHLKFKTETNSHPLFCGYYV 1689 Query: 728 GPSGAVRSPITLFAKSLMALDDGSLDDKLASYLTEFSVGHSLGQEMWNLIPVEQVHYQAA 549 P GAVR+P LFAK ++ +DD +LDDK+ SYL+EFSVGH+LG + ++IP + YQ+A Sbjct: 1690 SPLGAVRNPFALFAKLMICIDDCTLDDKILSYLSEFSVGHTLGDSLIHVIPSAILPYQSA 1749 Query: 548 LFDFFCRKASREQKLVLKIGEVPDTIISTILSSARAIARPLYAYLSSSARKLLL-KGSKT 372 DFFCR + QKL+L + +P++ I ++ + ++ ++ L S AR LL+ KGS Sbjct: 1750 CHDFFCRNCTPSQKLLLSLDPLPESTILRLILKIKWASKAFFSLLPSKARDLLVSKGSLQ 1809 Query: 371 YRPFD 357 PFD Sbjct: 1810 SMPFD 1814 Score = 332 bits (852), Expect = 1e-87 Identities = 177/407 (43%), Positives = 232/407 (57%), Gaps = 52/407 (12%) Frame = -1 Query: 5948 ESLSNTIHRDTVTSPLVEAVADPLRDSLEKYPYAVSPSLTSFLSKRGINISGYGAKTHPH 5769 E+L++T+HRD T+P++ +V +PL+ SL +YP+ + + FL GI SG G HPH Sbjct: 8 EALNSTVHRDAATNPILNSVVEPLQQSLVQYPWLLPKEVLPFLLSSGIPNSGLGTTPHPH 67 Query: 5768 PAHKNIENYILQDVWPNLIRNQSSVLFMKPSKFRKLEQKDSNFHELINYRLTPQDTTRYP 5589 P HK IE ++L + W L S+++FMKP KF+KL ++NF L NYRLTP DTTRYP Sbjct: 68 PTHKVIETFLLYNHWSCLANQPSTIMFMKPQKFQKLRNLNNNFTHLCNYRLTPADTTRYP 127 Query: 5588 SSSTTLPAHSTVFMHDALMYYTPGDIADLFLSAPHLTQLYATLVVPPESSFTDTSFFPEL 5409 ++S LP VFMHDALMY+ P I DLFL++P + LY +L+VPPES FTD S P L Sbjct: 128 TTSLHLPNTPVVFMHDALMYFNPAQILDLFLNSPIINSLYCSLIVPPESDFTDLSLQPIL 187 Query: 5408 YNFHFHDTDLVYELEGNPSHHYIQPKSALDWLRTSTIRCSDLTLSISILESIGPVHHLLI 5229 Y F L Y EG+ + Y QP ALDWL+ +I +L LS++ L+S GPVH +LI Sbjct: 188 YQFSISGQTLHYVPEGHNAGSYNQPLHALDWLKIHSILSRELNLSVTKLDSWGPVHSILI 247 Query: 5228 QRGLAPKH-----------------------------------------------RENTT 5190 QR L P H + Sbjct: 248 QRNLPPLHPARQSPINHSLSSLFPQHNRAPRALRSQRDSSQHLQSALQALFPPPQAAHAL 307 Query: 5189 RDFDTPDCFLLPAPTSLSQNVRDRLVPLAAYHSLRAYVMAVRTLRTTDPAGFVRTQSTKP 5010 F P+C LP+ T L+Q +R RLVPL Y++L Y AVRTLRT+DPAGFVRTQS K Sbjct: 308 ASFKIPECLELPSATFLNQPLRHRLVPLQVYNALFTYTRAVRTLRTSDPAGFVRTQSNKA 367 Query: 5009 EFAWVTAEAWDSLQNFALLTCNQRPAVSYLTFASSFARIK-----HW 4884 E++WVT AWD+LQ FAL+ RP V Y F + F ++K HW Sbjct: 368 EYSWVTPNAWDNLQTFALMNAPIRPRVFYEFFLNPFQKLKLHFRQHW 414 >ref|NP_041257.1| replicase [Ononis yellow mosaic virus] gi|130553|sp|P20127.1|POLR_OYMV RecName: Full=RNA replicase polyprotein gi|332574|gb|AAA46796.1| replicase protein (RP) [Ononis yellow mosaic virus] Length = 1776 Score = 971 bits (2510), Expect = 0.0 Identities = 539/1164 (46%), Positives = 691/1164 (59%), Gaps = 16/1164 (1%) Frame = -1 Query: 3818 GSLDTVNVAIP----DDTTPE----RSTLILDPSGFGEVSTFAQLYPDDYVLGCAEFFCR 3663 G+L+ + + +P + T P+ S L+ D S G V F ++P +Y + F R Sbjct: 636 GALNQLPLPVPSPLQNSTNPKPPFPSSDLLSDMSCTGPVVEFETIFPAEYHMSNGSFPTR 695 Query: 3662 KRHHGVSTAPFPTMPCLLDAVGSCLGVTPAELWSTLCHHLPDSLLQNPQITSCGLSTDHL 3483 R H S+APFP CLL AV S L T +LW LC LPDSLL N ++ + GLSTDHL Sbjct: 696 LRGHPRSSAPFPQKHCLLTAVASQLSYTEHQLWEFLCDMLPDSLLTNSEVENFGLSTDHL 755 Query: 3482 TALSHFYQFKAFVTSDQEPIPHPYGVDSAPTTIRFSHTTGNPGHF-----FITSDPGAPP 3318 T LS+ F+ + + IP YG+ A T I+ S+ G P HF + PG+ P Sbjct: 756 TCLSYRLHFECIIHTSHSTIP--YGIKKASTVIQISYIDGPPKHFKAFIKLAAAAPGSNP 813 Query: 3317 PPKXXXXXXXXXXXXXXLTTFRLNGELLPFQTVHNYRANVKRAKNLISNMKNGFDGVMAT 3138 F+ N LPF H + +V AKNLISNMKNGFDG+ + Sbjct: 814 SKSNLVRAALR---------FKYNDAFLPFWDAHQHTISVPHAKNLISNMKNGFDGITSQ 864 Query: 3137 VDPQHPNSAKEKFVTTDGILDIAKSRSIKLIHIAGFPGCGKSYPIQRLLLTAPRARNFRI 2958 + S K K + D +D++ R +IHIAGFPGCGKS+PIQ+LL T P R+FR+ Sbjct: 865 LSGPSNKSPKMKLLELDATIDVSFPRKCDVIHIAGFPGCGKSHPIQKLLQT-PAFRHFRL 923 Query: 2957 SVPTAELRHEWKASMDLEPKNNWRIGTWEXXXXXXXXXLVVDEIYKMPRGYLDLAILMDP 2778 SVPT ELR EWK ++L WR+ TWE LVVDEIYK+PRGYLDL +L DP Sbjct: 924 SVPTNELRSEWKRDLNLPESEVWRLCTWETALFKSSNILVVDEIYKLPRGYLDLILLADP 983 Query: 2777 HLEMVIVLGDPLQGEYHSTHPQSSNHKLSSEINHLRPYLDFYCAWTRRCPKLIADFFGVP 2598 +++VI+LGDPLQGEYHS+HP SSN +L SE L Y+D YC WT RCPK +AD FGV Sbjct: 984 SIQLVIMLGDPLQGEYHSSHPSSSNSRLESETTRLSKYIDCYCWWTYRCPKAVADLFGVK 1043 Query: 2597 TTSQEPGFCRPVNHLPMNCPILTNSHSAALTLTEAHSRACTISASQGSTYSSPVVIHLDR 2418 T + GF R V P N P L NS + A T+ A TIS+SQG TYS PV + LDR Sbjct: 1044 TFNSNEGFIRAVLSHPPNLPNLVNSIATANTMQSLGHHALTISSSQGMTYSDPVTVLLDR 1103 Query: 2417 HSSQLSNSMALVALTRSTKGVLFSGDQSILQPGPHSAKLFS-QLTQFQSSHSPDDRYPIQ 2241 HS ++ ALVALTRS G+ F G ++ +FS LT +P+ Sbjct: 1104 HSLLITPQTALVALTRSRSGIYFIGSMYTASGSAGTSYMFSCALTGLPVDMM--SAFPL- 1160 Query: 2240 THFIEQLRGVTLISTPLKSRKLVGACPSEVKHSSTVRDFTHHAIRGSTVRDPSYQPSLAH 2061 + LI P++SR+ H + G T PSL Sbjct: 1161 ------FHTLPLIHEPIRSRR-------------------HRLVAGHT-------PSL-- 1186 Query: 2060 VVRHTSPAIYHSELNRLHPDFKGDAVRSAVIVCGDGIDHLP--RVSPHFIAETRLPYHSD 1887 H P+ L P + ++ G + P R++ + TRLP H D Sbjct: 1187 ---HVPPSNKWPHRLHLPPHIPTSHSKDVILAHGIVASNAPERRLTTLHLPPTRLPLHFD 1243 Query: 1886 MPSAMPSQCSLSPPTFSAPVFEPVYPGEDFETLASTFLPAHDPHLREIIFKGERSAQFPY 1707 + S PS S S + S F + GE FE LA+ FLPAHDP L+E+ + S QFPY Sbjct: 1244 LESCNPSTVSTSSTSNSEVPFTHAFLGESFEELAAHFLPAHDPDLKEVTVGDQTSQQFPY 1303 Query: 1706 LNQPFDLFLQPQTLIAAQHHGQKDSTLLPASIPKRLRFRRNSTPYVISPKDQLLGELLFI 1527 L+QP+ L QP +L+AA H D TLL SI KRLRFR +S+PY +P D +LG LL+ Sbjct: 1304 LDQPYTLSCQPSSLLAASHKPASDPTLLIFSISKRLRFRASSSPYAFTPNDLILGHLLYT 1363 Query: 1526 SLCKAYNRHPSSVEPFDEALFADCINLNEFAQLSSKTQTTIMANASRSDPDWRWSAVRIF 1347 + CKA+ R P+S PF+ ALFA+CI LNE+AQLSSKTQ TI++NASRSDPDWR++ VRIF Sbjct: 1364 NWCKAFGRCPNSTIPFNPALFAECICLNEYAQLSSKTQATIVSNASRSDPDWRYTVVRIF 1423 Query: 1346 SKSQHKTNEASIFGSWKACQTLALMHDAVVLLLGPVKKYQRLFDNRDRPANIYVHASHTP 1167 +KSQHK N+ SIFGSWKACQTLALMHD V+L LGPVKKYQR+ D+ DRP IY H TP Sbjct: 1424 AKSQHKVNDGSIFGSWKACQTLALMHDFVILTLGPVKKYQRIIDHYDRPNFIYTHCGKTP 1483 Query: 1166 FQMSDWCRENLSSCEHVANDYTAFDQSQHGEAVVLEIKKMRRLSIPEPLIQLHAYLKTNV 987 ++S W L ++ NDYT+FDQSQHGEAV+ E KM R+ IP LI LH YLKTNV Sbjct: 1484 SELSAWSHSFLKGDAYICNDYTSFDQSQHGEAVIFESLKMHRVGIPRHLIDLHIYLKTNV 1543 Query: 986 TTQFGPLTCMRLTGEPGTYDDNTDYNLAVIHSQYLMASIPHMVSGDDSLIDRQPLPNPLW 807 +TQFGPLTCMRLTGEPGTYDDNTDYNLAVI SQY+++ P MVSGDDS+I P NP W Sbjct: 1544 STQFGPLTCMRLTGEPGTYDDNTDYNLAVIFSQYVISDHPIMVSGDDSVICGHPPINPNW 1603 Query: 806 ITIGPMLHLRFKLEVTRYPLFCGYLVGPSGAVRSPITLFAKSLMALDDGSLDDKLASYLT 627 + +LHLRFK E T PLFCGY VGP+G R+P LFAK +++ D G+L + L SYL Sbjct: 1604 PAVEKLLHLRFKTEETSLPLFCGYYVGPTGCCRNPFALFAKLMISYDKGNLFETLPSYLY 1663 Query: 626 EFSVGHSLGQEMWNLIPVEQVHYQAALFDFFCRKASREQKLVLKIGEVPDTIISTILSSA 447 EFS+GH LG + L P + Y +A +D FCRK + QKL+L +P + S + S++ Sbjct: 1664 EFSIGHRLGDVVRLLFPDHLLKYYSACWDLFCRKCTASQKLILSFEPIPPSFFSKLASTS 1723 Query: 446 RAIARPLYAYLSSSARKLLLKGSK 375 R +++ L++ L + R +L+ SK Sbjct: 1724 RWVSKVLFSDLPTKIRDMLISSSK 1747 Score = 327 bits (837), Expect = 6e-86 Identities = 166/353 (47%), Positives = 221/353 (62%), Gaps = 1/353 (0%) Frame = -1 Query: 5945 SLSNTIHRDTVTSPLVEAVADPLRDSLEKYPYAVSPSLTSFLSKRGINISGYGAKTHPHP 5766 +L+++ H+D+ +P++ + PL+ SL+ +P+ + FL GI SG+G HPH Sbjct: 9 ALASSTHKDSSLNPVLNSAVQPLQTSLQNFPWIIGKEHLPFLLAAGIPTSGFGCNPHPHA 68 Query: 5765 AHKNIENYILQDVWPNLIRNQSSVLFMKPSKFRKLEQKDSNFHELINYRLTPQDTTRYPS 5586 HK IE ++L + W + Q+SV+FMKPSKF+KL + NF EL+NYRLT D+ RYPS Sbjct: 69 VHKVIETFLLFNHWSFMATVQASVMFMKPSKFKKLASVNPNFSELVNYRLTAADSVRYPS 128 Query: 5585 SSTTLPAHSTVFMHDALMYYTPGDIADLFLSAPHLTQLYATLVVPPESSFTDTSFFPELY 5406 +ST+LP + VFMHDALMY+ P I DLF+ P L +L+ +LVVPPESSFTD S P LY Sbjct: 129 TSTSLPKYEIVFMHDALMYFNPSQILDLFIQCPSLQRLHCSLVVPPESSFTDLSLHPNLY 188 Query: 5405 NFHFHDTDLVYELEGNPSHHYIQPKSALDWLRTSTIRCSDLTLSISILESIGPVHHLLIQ 5226 + L Y EG+ + Y QP A+ WL+ ++I L LS+S LES GPVH LLI Sbjct: 189 TYTISGNTLHYVPEGHHAGSYDQPLDAISWLKLNSIHSPHLNLSVSKLESWGPVHSLLIT 248 Query: 5225 RGLAP-KHRENTTRDFDTPDCFLLPAPTSLSQNVRDRLVPLAAYHSLRAYVMAVRTLRTT 5049 RGL E F P+C LP T L Q +R RLVP Y +L Y AVRTLRT+ Sbjct: 249 RGLPHLPSSEKQQVSFHIPNCLPLPEATFLHQPLRHRLVPTEVYDALFTYTRAVRTLRTS 308 Query: 5048 DPAGFVRTQSTKPEFAWVTAEAWDSLQNFALLTCNQRPAVSYLTFASSFARIK 4890 DPAGFVRT S KP+++WVT+ AWD+LQ +ALL RP V + F S + + Sbjct: 309 DPAGFVRTHSNKPQYSWVTSRAWDNLQTYALLNAPVRPVVLFDFFLSPLKKFQ 361