BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia22_contig00026004
         (995 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280792.1| PREDICTED: pentatricopeptide repeat-containi...   378   e-102
ref|XP_007226881.1| hypothetical protein PRUPE_ppa016715mg, part...   345   1e-92
ref|XP_004298471.1| PREDICTED: pentatricopeptide repeat-containi...   318   2e-84
ref|XP_006398544.1| hypothetical protein EUTSA_v10001115mg [Eutr...   295   2e-77
ref|XP_006290812.1| hypothetical protein CARUB_v10016917mg [Caps...   287   4e-75
ref|XP_002876755.1| pentatricopeptide repeat-containing protein ...   284   3e-74
ref|NP_178260.1| pentatricopeptide repeat-containing protein [Ar...   284   3e-74
ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat...   224   6e-56
ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat...   222   2e-55
ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat...   221   3e-55
ref|XP_007010336.1| Pentatricopeptide repeat (PPR) superfamily p...   212   2e-52
gb|EXB41949.1| hypothetical protein L484_002200 [Morus notabilis]     211   5e-52
ref|XP_006429514.1| hypothetical protein CICLE_v10011209mg [Citr...   211   5e-52
ref|XP_006341113.1| PREDICTED: putative pentatricopeptide repeat...   210   8e-52
ref|XP_004485987.1| PREDICTED: pentatricopeptide repeat-containi...   206   2e-50
ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containi...   205   3e-50
ref|XP_004246883.1| PREDICTED: putative pentatricopeptide repeat...   204   3e-50
ref|XP_004305093.1| PREDICTED: putative pentatricopeptide repeat...   204   5e-50
ref|XP_004295634.1| PREDICTED: pentatricopeptide repeat-containi...   204   5e-50
ref|XP_002323645.2| pentatricopeptide repeat-containing family p...   202   1e-49

>ref|XP_002280792.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01510,
           mitochondrial [Vitis vinifera]
           gi|297737690|emb|CBI26891.3| unnamed protein product
           [Vitis vinifera]
          Length = 610

 Score =  378 bits (971), Expect = e-102
 Identities = 187/307 (60%), Positives = 230/307 (74%), Gaps = 4/307 (1%)
 Frame = +2

Query: 86  YSSLANTHFNPNLSPFS-QKQTFSSLLQHCSSHPNQLKQIHALLLTTGLSIKNXXXXXXX 262
           +SSL + H +         KQ  ++LLQ CSSHP+ LKQ+HALLLTTGLSIKN       
Sbjct: 17  FSSLLHAHGSSTGQSLPITKQALTTLLQSCSSHPSLLKQLHALLLTTGLSIKNALITQLL 76

Query: 263 XXXXXXGNVNYARHLFDEMHKPRPFLWNTLIKGYVKNELFDDSTALYGQMHHLGVRPDKF 442
                 G+++YAR LFDEMHKPRPFLWNT++KGYVKN + D + ++YG+M HLGVRPD F
Sbjct: 77  TSLTLLGDMSYARQLFDEMHKPRPFLWNTIMKGYVKNGIPDKAVSVYGKMRHLGVRPDPF 136

Query: 443 TFPFVLKACTDI---WVGAEIHVHVIKFGLDFDPRARTELMIMYVKFGELGSADYLFKSM 613
           TFPFV+KAC ++   W G  +H HV+K GL+F    RTELMIMYVKFGELG A++LF SM
Sbjct: 137 TFPFVIKACAELAELWAGLGMHGHVVKHGLEFVAAVRTELMIMYVKFGELGCAEFLFGSM 196

Query: 614 IERDLVAWNALISVYVQNGHAYRALNLFHQMDLMGIKPDSVTFVSVLSACAHLGCLENGK 793
           +ERDLVAWNALI+V VQ G + +AL  F +M + GIKPDSVT VS LSAC HLGCLE G+
Sbjct: 197 VERDLVAWNALIAVCVQTGFSSKALQSFREMGMAGIKPDSVTIVSALSACGHLGCLETGE 256

Query: 794 KIDRIVVEEELNRNLFINNARLDMYAKCGSINVARNLFDDMPQRNVISWSTIIGGYAVNG 973
           +I     EE ++ N+ ++NARLDM AKCG ++ A NLFD+MPQRNVISWST+IGGYAVNG
Sbjct: 257 EIYEFAREEGIDSNIIVHNARLDMCAKCGDMDKAMNLFDEMPQRNVISWSTVIGGYAVNG 316

Query: 974 DSENALA 994
           +SE ALA
Sbjct: 317 ESEKALA 323



 Score = 98.2 bits (243), Expect = 5e-18
 Identities = 64/238 (26%), Positives = 114/238 (47%), Gaps = 8/238 (3%)
 Frame = +2

Query: 281 GNVNYARHLFDEMHKPRPFLWNTLIKGYVKNELFDDSTALYGQMHHLGVRPDKFTFPFVL 460
           G +  A  LF  M +     WN LI   V+      +   + +M   G++PD  T    L
Sbjct: 184 GELGCAEFLFGSMVERDLVAWNALIAVCVQTGFSSKALQSFREMGMAGIKPDSVTIVSAL 243

Query: 461 KACTDIW---VGAEIHVHVIKFGLDFDPRARTELMIMYVKFGELGSADYLFKSMIERDLV 631
            AC  +     G EI+    + G+D +       + M  K G++  A  LF  M +R+++
Sbjct: 244 SACGHLGCLETGEEIYEFAREEGIDSNIIVHNARLDMCAKCGDMDKAMNLFDEMPQRNVI 303

Query: 632 AWNALISVYVQNGHAYRALNLFHQMDLMGIKPDSVTFVSVLSACAHLGCLENGKKIDRIV 811
           +W+ +I  Y  NG + +AL LF +M   G++P+ VTF++VLSAC+H G +  G +    +
Sbjct: 304 SWSTVIGGYAVNGESEKALALFSRMKNQGVQPNYVTFLAVLSACSHTGRVNEGWQYFNFM 363

Query: 812 VEEELNRNLFINN----ARLDMYAKCGSINVARNLFDDMP-QRNVISWSTIIGGYAVN 970
            + + ++N+          +D+  + G +  A N    MP + +   W  ++G  A++
Sbjct: 364 AQSD-DKNIQPRKEHYACMVDLLGRSGHLEEAYNFIKIMPIEADPGIWGALLGACAIH 420


>ref|XP_007226881.1| hypothetical protein PRUPE_ppa016715mg, partial [Prunus persica]
           gi|462423817|gb|EMJ28080.1| hypothetical protein
           PRUPE_ppa016715mg, partial [Prunus persica]
          Length = 574

 Score =  345 bits (886), Expect = 1e-92
 Identities = 167/286 (58%), Positives = 218/286 (76%), Gaps = 3/286 (1%)
 Frame = +2

Query: 143 QTFSSLLQHCSSHPNQLKQIHALLLTTGLSIKNXXXXXXXXXXXXXGNVNYARHLFDEMH 322
           Q F++LLQ CSS+PN LKQIHAL+LTTGLSIKN              +++YAR LFD+MH
Sbjct: 1   QVFTTLLQSCSSYPNHLKQIHALILTTGLSIKNSLTTQLLTNLTLLRDMSYARQLFDQMH 60

Query: 323 KPRPFLWNTLIKGYVKNELFDDSTALYGQMHHLGVRPDKFTFPFVLKACTDI---WVGAE 493
           KPR FLWNTLIK YVKN +F ++  +Y QMH LGVRPD+FT+ FV+KAC ++   W G+ 
Sbjct: 61  KPRVFLWNTLIKAYVKNGIFTEAAFVYRQMHLLGVRPDQFTYTFVVKACAELPELWAGSA 120

Query: 494 IHVHVIKFGLDFDPRARTELMIMYVKFGELGSADYLFKSMIERDLVAWNALISVYVQNGH 673
           +  HV+K+GL+F    RTEL++M+ KFGELG AD+LF++M+ERDL+AWNA I+  VQNG+
Sbjct: 121 VLAHVVKYGLEFVAMVRTELILMFAKFGELGMADFLFETMVERDLIAWNAFIAACVQNGN 180

Query: 674 AYRALNLFHQMDLMGIKPDSVTFVSVLSACAHLGCLENGKKIDRIVVEEELNRNLFINNA 853
           A +AL LF QMD+ GIK D+V+ VS  SAC  LGCLENG++I  I+ +  +  N+ + NA
Sbjct: 181 AGKALALFRQMDVAGIKHDAVSVVSAFSACGQLGCLENGQEIYGIMRKYGIVCNIIVANA 240

Query: 854 RLDMYAKCGSINVARNLFDDMPQRNVISWSTIIGGYAVNGDSENAL 991
           +LDMY KCGSI++A  LF+DMPQRNVISWST+I GY++NG+SE AL
Sbjct: 241 QLDMYVKCGSIDMAEALFEDMPQRNVISWSTMIIGYSINGESEKAL 286



 Score =  103 bits (256), Expect = 1e-19
 Identities = 65/241 (26%), Positives = 118/241 (48%), Gaps = 7/241 (2%)
 Frame = +2

Query: 281 GNVNYARHLFDEMHKPRPFLWNTLIKGYVKNELFDDSTALYGQMHHLGVRPDKFTFPFVL 460
           G +  A  LF+ M +     WN  I   V+N     + AL+ QM   G++ D  +     
Sbjct: 148 GELGMADFLFETMVERDLIAWNAFIAACVQNGNAGKALALFRQMDVAGIKHDAVSVVSAF 207

Query: 461 KACTDIWV---GAEIHVHVIKFGLDFDPRARTELMIMYVKFGELGSADYLFKSMIERDLV 631
            AC  +     G EI+  + K+G+  +       + MYVK G +  A+ LF+ M +R+++
Sbjct: 208 SACGQLGCLENGQEIYGIMRKYGIVCNIIVANAQLDMYVKCGSIDMAEALFEDMPQRNVI 267

Query: 632 AWNALISVYVQNGHAYRALNLFHQMDLMGIKPDSVTFVSVLSACAHLGCLENGKKIDRIV 811
           +W+ +I  Y  NG + +ALN+F +M   G++P+ VT++ VL AC+H G +  GK     +
Sbjct: 268 SWSTMIIGYSINGESEKALNMFSRMQKHGVQPNHVTYLGVLCACSHAGLVNEGKAYFSHM 327

Query: 812 VE---EELNRNLFINNARLDMYAKCGSINVARNLFDDMP-QRNVISWSTIIGGYAVNGDS 979
           V+   + +   +      +D+  + G +  A N    MP + +   W  ++G   ++ + 
Sbjct: 328 VQSGNKNIRPKIEHYACMVDLLGRSGHLEEAYNFIRSMPIEPDSGVWGALLGACTIHQNV 387

Query: 980 E 982
           E
Sbjct: 388 E 388



 Score = 92.4 bits (228), Expect = 3e-16
 Identities = 53/168 (31%), Positives = 85/168 (50%)
 Frame = +2

Query: 491 EIHVHVIKFGLDFDPRARTELMIMYVKFGELGSADYLFKSMIERDLVAWNALISVYVQNG 670
           +IH  ++  GL       T+L+       ++  A  LF  M +  +  WN LI  YV+NG
Sbjct: 19  QIHALILTTGLSIKNSLTTQLLTNLTLLRDMSYARQLFDQMHKPRVFLWNTLIKAYVKNG 78

Query: 671 HAYRALNLFHQMDLMGIKPDSVTFVSVLSACAHLGCLENGKKIDRIVVEEELNRNLFINN 850
               A  ++ QM L+G++PD  T+  V+ ACA L  L  G  +   VV+  L     +  
Sbjct: 79  IFTEAAFVYRQMHLLGVRPDQFTYTFVVKACAELPELWAGSAVLAHVVKYGLEFVAMVRT 138

Query: 851 ARLDMYAKCGSINVARNLFDDMPQRNVISWSTIIGGYAVNGDSENALA 994
             + M+AK G + +A  LF+ M +R++I+W+  I     NG++  ALA
Sbjct: 139 ELILMFAKFGELGMADFLFETMVERDLIAWNAFIAACVQNGNAGKALA 186


>ref|XP_004298471.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01510,
           mitochondrial-like [Fragaria vesca subsp. vesca]
          Length = 614

 Score =  318 bits (816), Expect = 2e-84
 Identities = 158/310 (50%), Positives = 217/310 (70%), Gaps = 7/310 (2%)
 Frame = +2

Query: 83  KYSSLANTHFN----PNLSPFS-QKQTFSSLLQHCSSHPNQLKQIHALLLTTGLSIKNXX 247
           ++SS A    N    P+  P +  KQ F++ L+ CSSHP+QLKQ+HA++LTTG+S+KN  
Sbjct: 17  RFSSRAELDLNLTRKPDPVPVTITKQAFTAQLESCSSHPDQLKQLHAVILTTGISVKNSL 76

Query: 248 XXXXXXXXXXXGNVNYARHLFDEMHKPRPFLWNTLIKGYVKNELFDDSTALYGQMHHLGV 427
                      G  +YAR +FDEMHKPR FLWNT+IK YVK+  F ++ A+Y +MH LGV
Sbjct: 77  LTRLITSFIALGETSYARKVFDEMHKPRVFLWNTMIKAYVKDGDFIEAAAVYRRMHRLGV 136

Query: 428 RPDKFTFPFVLKACTDI--WVGAEIHVHVIKFGLDFDPRARTELMIMYVKFGELGSADYL 601
           RPD+FT+ FV+KAC  +  W G  +  H +K+GL+F    RTE+++M V+  ELG A +L
Sbjct: 137 RPDEFTYTFVVKACAQLLPWAGLAVAAHAVKYGLEFVAEVRTEMVVMCVRNRELGLARFL 196

Query: 602 FKSMIERDLVAWNALISVYVQNGHAYRALNLFHQMDLMGIKPDSVTFVSVLSACAHLGCL 781
           F SM+ERDLVAWNA ++  VQ+GHA  AL+LF +M + G+K D+VT VS  SAC  LGCL
Sbjct: 197 FGSMVERDLVAWNAFVAACVQSGHAAEALDLFRRMRVAGVKLDAVTIVSAFSACGQLGCL 256

Query: 782 ENGKKIDRIVVEEELNRNLFINNARLDMYAKCGSINVARNLFDDMPQRNVISWSTIIGGY 961
           E G++I  I+ +  +  N+ + NARLDMY KCGS+++A  LF+DM +RNVISWST++ GY
Sbjct: 257 ETGEEIYGIMRQCGIGCNVIVANARLDMYVKCGSVDMAEALFEDMSRRNVISWSTMVLGY 316

Query: 962 AVNGDSENAL 991
           A+NG+S  AL
Sbjct: 317 AMNGESRKAL 326



 Score = 99.8 bits (247), Expect = 2e-18
 Identities = 65/236 (27%), Positives = 116/236 (49%), Gaps = 7/236 (2%)
 Frame = +2

Query: 296 ARHLFDEMHKPRPFLWNTLIKGYVKNELFDDSTALYGQMHHLGVRPDKFTFPFVLKACTD 475
           AR LF  M +     WN  +   V++    ++  L+ +M   GV+ D  T      AC  
Sbjct: 193 ARFLFGSMVERDLVAWNAFVAACVQSGHAAEALDLFRRMRVAGVKLDAVTIVSAFSACGQ 252

Query: 476 IW---VGAEIHVHVIKFGLDFDPRARTELMIMYVKFGELGSADYLFKSMIERDLVAWNAL 646
           +     G EI+  + + G+  +       + MYVK G +  A+ LF+ M  R++++W+ +
Sbjct: 253 LGCLETGEEIYGIMRQCGIGCNVIVANARLDMYVKCGSVDMAEALFEDMSRRNVISWSTM 312

Query: 647 ISVYVQNGHAYRALNLFHQMDLMGIKPDSVTFVSVLSACAHLGCLENGKK-IDRIVVEEE 823
           +  Y  NG + +AL++F +M   G+ P+ VT++ VLSAC+H G +  G+    R+V   +
Sbjct: 313 VLGYAMNGESRKALDMFSRMQERGVAPNHVTYLGVLSACSHAGLVNEGRAYFKRMVQSGD 372

Query: 824 LNRNLFINN--ARLDMYAKCGSINVARNLFDDMP-QRNVISWSTIIGGYAVNGDSE 982
            N    I +    +D+  + G +  A N    MP + +   W  ++G  AV+ + E
Sbjct: 373 KNIQPKIEHYACMVDLLGRSGHLEEAYNFIRSMPIEPDSGVWGALLGACAVHQNVE 428


>ref|XP_006398544.1| hypothetical protein EUTSA_v10001115mg [Eutrema salsugineum]
           gi|557099633|gb|ESQ39997.1| hypothetical protein
           EUTSA_v10001115mg [Eutrema salsugineum]
          Length = 584

 Score =  295 bits (755), Expect = 2e-77
 Identities = 154/288 (53%), Positives = 199/288 (69%), Gaps = 3/288 (1%)
 Frame = +2

Query: 140 KQTFSSLLQHCSSHPNQLKQIHALLLTTGLSIKNXXXXXXXXXXXXXGNVNYARHLFDEM 319
           KQ  S LL+  SS P Q K+IHAL+LT+GLS+KN             G++ YAR +FDEM
Sbjct: 10  KQMLSKLLRASSSKPKQFKKIHALVLTSGLSVKNSLLTQLLEKLILVGDMCYARQMFDEM 69

Query: 320 HKPRPFLWNTLIKGYVKNELFDDSTALYGQMHHLGVRPDKFTFPFVLKACTDIWV---GA 490
           HKPR FLWNTL KGYVKN+L  +S  LY  M  L VRPD+FT+PFV+KA + + V   G 
Sbjct: 70  HKPRIFLWNTLFKGYVKNQLPLESVMLYKNMRDLDVRPDEFTYPFVVKAISQLGVLPCGF 129

Query: 491 EIHVHVIKFGLDFDPRARTELMIMYVKFGELGSADYLFKSMIERDLVAWNALISVYVQNG 670
             H HV+K+G +      TEL++MY+KFGEL SA++LF+SM  +DLVAWNA I+  VQ G
Sbjct: 130 AFHAHVLKYGFETLGIVATELVMMYMKFGELSSAEFLFESMQGKDLVAWNAFIAACVQTG 189

Query: 671 HAYRALNLFHQMDLMGIKPDSVTFVSVLSACAHLGCLENGKKIDRIVVEEELNRNLFINN 850
           ++  AL  +H+M    ++ DS T VSVLSAC  LG LE GK+I     +E+++ N+ + N
Sbjct: 190 NSAIALEYYHKMCEDAVQFDSFTVVSVLSACGQLGSLEIGKQIYDRARKEDIDCNIIVEN 249

Query: 851 ARLDMYAKCGSINVARNLFDDMPQRNVISWSTIIGGYAVNGDSENALA 994
           A+LDMY KCGS   AR LFD+M QRN++SWST+I GYA+NGDSE ALA
Sbjct: 250 AKLDMYLKCGSTEAARVLFDEMRQRNIVSWSTMIVGYAMNGDSEEALA 297



 Score =  101 bits (252), Expect = 4e-19
 Identities = 74/266 (27%), Positives = 118/266 (44%), Gaps = 8/266 (3%)
 Frame = +2

Query: 203 HALLLTTGLSIKNXXXXXXXXXXXXXGNVNYARHLFDEMHKPRPFLWNTLIKGYVKNELF 382
           HA +L  G                  G ++ A  LF+ M       WN  I   V+    
Sbjct: 132 HAHVLKYGFETLGIVATELVMMYMKFGELSSAEFLFESMQGKDLVAWNAFIAACVQTGNS 191

Query: 383 DDSTALYGQMHHLGVRPDKFTFPFVLKACTDIW---VGAEIHVHVIKFGLDFDPRARTEL 553
             +   Y +M    V+ D FT   VL AC  +    +G +I+    K  +D +       
Sbjct: 192 AIALEYYHKMCEDAVQFDSFTVVSVLSACGQLGSLEIGKQIYDRARKEDIDCNIIVENAK 251

Query: 554 MIMYVKFGELGSADYLFKSMIERDLVAWNALISVYVQNGHAYRALNLFHQMDLMGIKPDS 733
           + MY+K G   +A  LF  M +R++V+W+ +I  Y  NG +  AL LF  M   G++P+ 
Sbjct: 252 LDMYLKCGSTEAARVLFDEMRQRNIVSWSTMIVGYAMNGDSEEALALFTMMQNEGLRPNY 311

Query: 734 VTFVSVLSACAHLGCLENGKKIDRIVVEEELNRNLFINN----ARLDMYAKCGSINVARN 901
           VTF+ VLSAC+H G +  GK+   ++V    ++NL          +D+  + G +  A  
Sbjct: 312 VTFLGVLSACSHAGLVNEGKRYFNLMVRSN-DKNLQPRKEHYACMVDLLGRSGLLEEAYE 370

Query: 902 LFDDMP-QRNVISWSTIIGGYAVNGD 976
               MP + +   W  ++G  AV+ D
Sbjct: 371 FIKKMPLEPDAGIWGALLGACAVHCD 396


>ref|XP_006290812.1| hypothetical protein CARUB_v10016917mg [Capsella rubella]
           gi|482559519|gb|EOA23710.1| hypothetical protein
           CARUB_v10016917mg [Capsella rubella]
          Length = 584

 Score =  287 bits (735), Expect = 4e-75
 Identities = 153/296 (51%), Positives = 201/296 (67%), Gaps = 3/296 (1%)
 Frame = +2

Query: 116 PNLSPFSQKQTFSSLLQHCSSHPNQLKQIHALLLTTGLSIKNXXXXXXXXXXXXXGNVNY 295
           P  +P + KQ  S LL+  SS PNQLK+IHA++L TG S KN             G++ Y
Sbjct: 3   PKQTPLT-KQMLSELLRASSSKPNQLKKIHAIVLRTGFSEKNSLLTQLLENLVLLGDMCY 61

Query: 296 ARHLFDEMHKPRPFLWNTLIKGYVKNELFDDSTALYGQMHHLGVRPDKFTFPFVLKACTD 475
           AR LFDEMHKPR FLWN+L KGYVKN L  +S  LY +M  LGVRPD+FT+PFV+KA + 
Sbjct: 62  ARQLFDEMHKPRIFLWNSLFKGYVKNHLPFESVLLYKKMRDLGVRPDEFTYPFVVKAISQ 121

Query: 476 IWV---GAEIHVHVIKFGLDFDPRARTELMIMYVKFGELGSADYLFKSMIERDLVAWNAL 646
           +     G+ +H HV+K G +      TEL++MY+KFGEL SA+ LF+SM  +D+VAWNA 
Sbjct: 122 LGFFPCGSALHAHVLKNGFECLGIVATELVMMYMKFGELSSAELLFESMQVKDVVAWNAF 181

Query: 647 ISVYVQNGHAYRALNLFHQMDLMGIKPDSVTFVSVLSACAHLGCLENGKKIDRIVVEEEL 826
           I+  VQ G++  AL  +H+M    ++ DS T VS+LSAC  LG LE G++I     +EE+
Sbjct: 182 IAACVQTGNSAIALEYYHKMCAAAVQFDSFTVVSMLSACGQLGSLEIGEEIYDRARKEEI 241

Query: 827 NRNLFINNARLDMYAKCGSINVARNLFDDMPQRNVISWSTIIGGYAVNGDSENALA 994
           + N+ + NARLDM+ KCG+   AR LFD+M QRNV+SWST+I GYA+NGDS  ALA
Sbjct: 242 DCNIIVENARLDMHLKCGNTEAARVLFDEMKQRNVVSWSTMIVGYAMNGDSGEALA 297



 Score = 98.6 bits (244), Expect = 4e-18
 Identities = 73/267 (27%), Positives = 118/267 (44%), Gaps = 8/267 (2%)
 Frame = +2

Query: 200 IHALLLTTGLSIKNXXXXXXXXXXXXXGNVNYARHLFDEMHKPRPFLWNTLIKGYVKNEL 379
           +HA +L  G                  G ++ A  LF+ M       WN  I   V+   
Sbjct: 131 LHAHVLKNGFECLGIVATELVMMYMKFGELSSAELLFESMQVKDVVAWNAFIAACVQTGN 190

Query: 380 FDDSTALYGQMHHLGVRPDKFTFPFVLKACTDIW---VGAEIHVHVIKFGLDFDPRARTE 550
              +   Y +M    V+ D FT   +L AC  +    +G EI+    K  +D +      
Sbjct: 191 SAIALEYYHKMCAAAVQFDSFTVVSMLSACGQLGSLEIGEEIYDRARKEEIDCNIIVENA 250

Query: 551 LMIMYVKFGELGSADYLFKSMIERDLVAWNALISVYVQNGHAYRALNLFHQMDLMGIKPD 730
            + M++K G   +A  LF  M +R++V+W+ +I  Y  NG +  AL LF  M   G+KP+
Sbjct: 251 RLDMHLKCGNTEAARVLFDEMKQRNVVSWSTMIVGYAMNGDSGEALALFTMMQNEGLKPN 310

Query: 731 SVTFVSVLSACAHLGCLENGKKIDRIVVEEELNRNLFINN----ARLDMYAKCGSINVAR 898
            VT + +LSAC+H G +  GK   R++V    ++NL          +D+  + G +  A 
Sbjct: 311 YVTCLGLLSACSHAGLVNEGKSYFRLMVRSN-DKNLEPRKEHYACMVDLLGRSGLLEEAY 369

Query: 899 NLFDDMP-QRNVISWSTIIGGYAVNGD 976
                MP + +   W  ++G  AV+ D
Sbjct: 370 EFIKKMPVEPDTGIWGALLGACAVHHD 396


>ref|XP_002876755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297322593|gb|EFH53014.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 597

 Score =  284 bits (727), Expect = 3e-74
 Identities = 151/288 (52%), Positives = 197/288 (68%), Gaps = 3/288 (1%)
 Frame = +2

Query: 140 KQTFSSLLQHCSSHPNQLKQIHALLLTTGLSIKNXXXXXXXXXXXXXGNVNYARHLFDEM 319
           KQ  S LL+  SS P QLK+IHA+++ TG S KN             G++ YAR +FDEM
Sbjct: 10  KQMLSELLRASSSKPKQLKKIHAVVIRTGFSEKNSLLTQLLENLVLVGDMCYARQVFDEM 69

Query: 320 HKPRPFLWNTLIKGYVKNELFDDSTALYGQMHHLGVRPDKFTFPFVLKACTDIWV---GA 490
            KPR FLWNTL KGYV+N+L  +S  LY +M  LGVRPD+FT+PFV+KA + + V   G 
Sbjct: 70  PKPRIFLWNTLFKGYVRNQLPFESVLLYKKMRDLGVRPDEFTYPFVVKAISQLGVLPCGV 129

Query: 491 EIHVHVIKFGLDFDPRARTELMIMYVKFGELGSADYLFKSMIERDLVAWNALISVYVQNG 670
            +H HV+K G +      TEL++MY+KFGEL SA++LF+SM  +DLVAWNA I+V VQ G
Sbjct: 130 SLHAHVLKNGFECLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFIAVCVQTG 189

Query: 671 HAYRALNLFHQMDLMGIKPDSVTFVSVLSACAHLGCLENGKKIDRIVVEEELNRNLFINN 850
           ++  AL  F++M    ++ DS T VS+LSAC  LG L+ G++I     +EE+  N+ + N
Sbjct: 190 NSAIALEYFNKMCADAVQFDSFTVVSMLSACGQLGSLDIGEEIYDRARKEEIECNIIVEN 249

Query: 851 ARLDMYAKCGSINVARNLFDDMPQRNVISWSTIIGGYAVNGDSENALA 994
           ARLDM+ KCGS   AR LFDDM QRNV+SWST+I GYA+NGDS  ALA
Sbjct: 250 ARLDMHLKCGSTEAARVLFDDMKQRNVVSWSTMIVGYAMNGDSGEALA 297



 Score = 92.4 bits (228), Expect = 3e-16
 Identities = 70/268 (26%), Positives = 117/268 (43%), Gaps = 9/268 (3%)
 Frame = +2

Query: 200 IHALLLTTGLSIKNXXXXXXXXXXXXXGNVNYARHLFDEMHKPRPFLWNTLIKGYVKNEL 379
           +HA +L  G                  G ++ A  LF+ M       WN  I   V+   
Sbjct: 131 LHAHVLKNGFECLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFIAVCVQTGN 190

Query: 380 FDDSTALYGQMHHLGVRPDKFTFPFVLKACTDIW---VGAEIHVHVIKFGLDFDPRARTE 550
              +   + +M    V+ D FT   +L AC  +    +G EI+    K  ++ +      
Sbjct: 191 SAIALEYFNKMCADAVQFDSFTVVSMLSACGQLGSLDIGEEIYDRARKEEIECNIIVENA 250

Query: 551 LMIMYVKFGELGSADYLFKSMIERDLVAWNALISVYVQNGHAYRALNLFHQMDLMGIKPD 730
            + M++K G   +A  LF  M +R++V+W+ +I  Y  NG +  AL LF  M   G++P+
Sbjct: 251 RLDMHLKCGSTEAARVLFDDMKQRNVVSWSTMIVGYAMNGDSGEALALFTMMQNEGLRPN 310

Query: 731 SVTFVSVLSACAHLGCLENGKKIDRIVV---EEELNRNLFINNARLDMYAKCGSINVARN 901
            VTF+ VLSAC+H G +  GK+   ++V   ++ L          +D+  + G +  A  
Sbjct: 311 YVTFLGVLSACSHAGLVNEGKRYFSLMVRLNDKNLEPRKEHYACMVDLLGRSGLLEEAYE 370

Query: 902 LFDDM---PQRNVISWSTIIGGYAVNGD 976
               M   P   +  W  ++G  AV+ D
Sbjct: 371 FIKKMRVEPDTGI--WGALLGACAVHRD 396


>ref|NP_178260.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75216969|sp|Q9ZVF4.1|PP140_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g01510, mitochondrial; Flags: Precursor
           gi|3785980|gb|AAC67327.1| hypothetical protein
           [Arabidopsis thaliana] gi|330250369|gb|AEC05463.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 584

 Score =  284 bits (727), Expect = 3e-74
 Identities = 149/287 (51%), Positives = 197/287 (68%), Gaps = 3/287 (1%)
 Frame = +2

Query: 140 KQTFSSLLQHCSSHPNQLKQIHALLLTTGLSIKNXXXXXXXXXXXXXGNVNYARHLFDEM 319
           KQ  S LL+  SS P QLK+IHA++L TG S KN             G++ YAR +FDEM
Sbjct: 10  KQMLSELLRASSSKPKQLKKIHAIVLRTGFSEKNSLLTQLLENLVVIGDMCYARQVFDEM 69

Query: 320 HKPRPFLWNTLIKGYVKNELFDDSTALYGQMHHLGVRPDKFTFPFVLKACT---DIWVGA 490
           HKPR FLWNTL KGYV+N+L  +S  LY +M  LGVRPD+FT+PFV+KA +   D   G 
Sbjct: 70  HKPRIFLWNTLFKGYVRNQLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDFSCGF 129

Query: 491 EIHVHVIKFGLDFDPRARTELMIMYVKFGELGSADYLFKSMIERDLVAWNALISVYVQNG 670
            +H HV+K+G        TEL++MY+KFGEL SA++LF+SM  +DLVAWNA ++V VQ G
Sbjct: 130 ALHAHVVKYGFGCLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAVCVQTG 189

Query: 671 HAYRALNLFHQMDLMGIKPDSVTFVSVLSACAHLGCLENGKKIDRIVVEEELNRNLFINN 850
           ++  AL  F++M    ++ DS T VS+LSAC  LG LE G++I     +EE++ N+ + N
Sbjct: 190 NSAIALEYFNKMCADAVQFDSFTVVSMLSACGQLGSLEIGEEIYDRARKEEIDCNIIVEN 249

Query: 851 ARLDMYAKCGSINVARNLFDDMPQRNVISWSTIIGGYAVNGDSENAL 991
           ARLDM+ KCG+   AR LF++M QRNV+SWST+I GYA+NGDS  AL
Sbjct: 250 ARLDMHLKCGNTEAARVLFEEMKQRNVVSWSTMIVGYAMNGDSREAL 296



 Score = 97.1 bits (240), Expect = 1e-17
 Identities = 67/240 (27%), Positives = 115/240 (47%), Gaps = 8/240 (3%)
 Frame = +2

Query: 281 GNVNYARHLFDEMHKPRPFLWNTLIKGYVKNELFDDSTALYGQMHHLGVRPDKFTFPFVL 460
           G ++ A  LF+ M       WN  +   V+      +   + +M    V+ D FT   +L
Sbjct: 158 GELSSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAIALEYFNKMCADAVQFDSFTVVSML 217

Query: 461 KACTDIW---VGAEIHVHVIKFGLDFDPRARTELMIMYVKFGELGSADYLFKSMIERDLV 631
            AC  +    +G EI+    K  +D +       + M++K G   +A  LF+ M +R++V
Sbjct: 218 SACGQLGSLEIGEEIYDRARKEEIDCNIIVENARLDMHLKCGNTEAARVLFEEMKQRNVV 277

Query: 632 AWNALISVYVQNGHAYRALNLFHQMDLMGIKPDSVTFVSVLSACAHLGCLENGKKIDRIV 811
           +W+ +I  Y  NG +  AL LF  M   G++P+ VTF+ VLSAC+H G +  GK+   ++
Sbjct: 278 SWSTMIVGYAMNGDSREALTLFTTMQNEGLRPNYVTFLGVLSACSHAGLVNEGKRYFSLM 337

Query: 812 VEEELNRNLFINN----ARLDMYAKCGSINVARNLFDDMP-QRNVISWSTIIGGYAVNGD 976
           V+   ++NL          +D+  + G +  A      MP + +   W  ++G  AV+ D
Sbjct: 338 VQSN-DKNLEPRKEHYACMVDLLGRSGLLEEAYEFIKKMPVEPDTGIWGALLGACAVHRD 396


>ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  224 bits (570), Expect = 6e-56
 Identities = 115/296 (38%), Positives = 175/296 (59%), Gaps = 3/296 (1%)
 Frame = +2

Query: 113 NPNLSPFSQKQTFSSLLQHCSSHPNQLKQIHALLLTTGLSIKNXXXXXXXXXXXXXGNVN 292
           NP+   FS+     + L +  +  NQLK IHA LL   L   N             G+ N
Sbjct: 6   NPSSPVFSKALEIKNYLSNGLNFFNQLKHIHARLLRLHLDQDNYLLNLILCCALDFGSTN 65

Query: 293 YARHLFDEMHKPRPFLWNTLIKGYVKNELFDDSTALYGQMHHLGVRPDKFTFPFVLKACT 472
           Y++ +F ++ +P  FLWNT+I+G V  + FDD+  LYG M   G  P+ FT PFVLKAC 
Sbjct: 66  YSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACA 125

Query: 473 ---DIWVGAEIHVHVIKFGLDFDPRARTELMIMYVKFGELGSADYLFKSMIERDLVAWNA 643
              D+ +G +IH  ++K G D D   +T L+ +YVK      A  +F  + ++++V+W A
Sbjct: 126 RKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTA 185

Query: 644 LISVYVQNGHAYRALNLFHQMDLMGIKPDSVTFVSVLSACAHLGCLENGKKIDRIVVEEE 823
           +I+ Y+ +GH   A+  F ++  MG+KPDS + V VL+ACA LG   +G+ IDR + +  
Sbjct: 186 IITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSG 245

Query: 824 LNRNLFINNARLDMYAKCGSINVARNLFDDMPQRNVISWSTIIGGYAVNGDSENAL 991
           + RN+F+  + LDMY KCG++  A  +F  MP+++++SWST+I GYA NG  + AL
Sbjct: 246 MGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQAL 301



 Score =  146 bits (369), Expect = 1e-32
 Identities = 92/306 (30%), Positives = 151/306 (49%), Gaps = 5/306 (1%)
 Frame = +2

Query: 80  HKYSSLANTHFNPNLSPFSQKQTFSSLLQHCSSHPNQLK--QIHALLLTTGLSIKNXXXX 253
           H Y S+    F PN        T   +L+ C+   +     +IH+LL+  G         
Sbjct: 100 HLYGSMRGGGFLPN------NFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVKT 153

Query: 254 XXXXXXXXXGNVNYARHLFDEMHKPRPFLWNTLIKGYVKNELFDDSTALYGQMHHLGVRP 433
                     N + A  +FD++       W  +I GY+ +  F ++   + ++  +G++P
Sbjct: 154 SLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKP 213

Query: 434 DKFTFPFVLKACT---DIWVGAEIHVHVIKFGLDFDPRARTELMIMYVKFGELGSADYLF 604
           D F+   VL AC    D   G  I  ++   G+  +    T L+ MYVK G L  A+ +F
Sbjct: 214 DSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIF 273

Query: 605 KSMIERDLVAWNALISVYVQNGHAYRALNLFHQMDLMGIKPDSVTFVSVLSACAHLGCLE 784
            +M E+D+V+W+ +I  Y  NG   +AL+LF QM    +KPD  T V VLSACA LG L+
Sbjct: 274 SAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALD 333

Query: 785 NGKKIDRIVVEEELNRNLFINNARLDMYAKCGSINVARNLFDDMPQRNVISWSTIIGGYA 964
            G     ++   E   N  +  A +DMY+KCGS+  A  +F  M +++ + W+ ++ G +
Sbjct: 334 LGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKKKDRVVWNAMMVGLS 393

Query: 965 VNGDSE 982
           +NG ++
Sbjct: 394 MNGHAK 399



 Score =  109 bits (272), Expect = 2e-21
 Identities = 71/243 (29%), Positives = 121/243 (49%), Gaps = 7/243 (2%)
 Frame = +2

Query: 281 GNVNYARHLFDEMHKPRPFLWNTLIKGYVKNELFDDSTALYGQMHHLGVRPDKFTFPFVL 460
           GN+  A  +F  M +     W+T+I+GY  N L   +  L+ QM    ++PD +T   VL
Sbjct: 264 GNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVL 323

Query: 461 KACT-----DIWVGAEIHVHVIKFGLDFDPRARTELMIMYVKFGELGSADYLFKSMIERD 625
            AC      D+ + A   +   +F  +  P   T L+ MY K G +  A  +F +M ++D
Sbjct: 324 SACATLGALDLGIWASSLMDRNEFLSN--PVLGTALIDMYSKCGSVTQAWEIFTAMKKKD 381

Query: 626 LVAWNALISVYVQNGHAYRALNLFHQMDLMGIKPDSVTFVSVLSACAHLGCLENGKK-ID 802
            V WNA++     NGHA    +LF  ++  GI+PD  TF+ +L  C H G +  G++  +
Sbjct: 382 RVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFN 441

Query: 803 RIVVEEELNRNLFINNARLDMYAKCGSINVARNLFDDMPQR-NVISWSTIIGGYAVNGDS 979
            +     L  ++      +D+  + G +N A  L ++MP + N + W  ++GG  ++ D+
Sbjct: 442 NMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDT 501

Query: 980 ENA 988
             A
Sbjct: 502 HLA 504


>ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  222 bits (565), Expect = 2e-55
 Identities = 114/295 (38%), Positives = 172/295 (58%), Gaps = 3/295 (1%)
 Frame = +2

Query: 116 PNLSPFSQKQTFSSLLQHCSSHPNQLKQIHALLLTTGLSIKNXXXXXXXXXXXXXGNVNY 295
           P   P S+      L+    +    LK +HA LL  GL   N              + NY
Sbjct: 5   PTSPPISKGLEIKKLILQGFNSFKHLKHLHAHLLRFGLCHDNYLLNMILRCSFDFSDTNY 64

Query: 296 ARHLFDEMHKPRPFLWNTLIKGYVKNELFDDSTALYGQMHHLGVRPDKFTFPFVLKACT- 472
            R LF ++ +P  FLWNT+I+G V N+ FDD+   YG M   G  P+ FTFPFVLKAC  
Sbjct: 65  TRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKACAR 124

Query: 473 --DIWVGAEIHVHVIKFGLDFDPRARTELMIMYVKFGELGSADYLFKSMIERDLVAWNAL 646
             D+ +G +IH  V+K G D D   +T L+ +Y K G L  A  +F  + ++++V+W A+
Sbjct: 125 LLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVSWTAI 184

Query: 647 ISVYVQNGHAYRALNLFHQMDLMGIKPDSVTFVSVLSACAHLGCLENGKKIDRIVVEEEL 826
           IS Y+  G    A+++F ++  M + PDS T V VLSAC  LG L +G+ I + ++E  +
Sbjct: 185 ISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMGM 244

Query: 827 NRNLFINNARLDMYAKCGSINVARNLFDDMPQRNVISWSTIIGGYAVNGDSENAL 991
            RN+F+  + +DMYAKCG++  AR++FD MP+++++SW  +I GYA+NG  + A+
Sbjct: 245 VRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAI 299



 Score =  151 bits (382), Expect = 3e-34
 Identities = 87/262 (33%), Positives = 135/262 (51%), Gaps = 3/262 (1%)
 Frame = +2

Query: 197 QIHALLLTTGLSIKNXXXXXXXXXXXXXGNVNYARHLFDEMHKPRPFLWNTLIKGYVKNE 376
           +IH L++  G                  G +  A  +FD++       W  +I GY+   
Sbjct: 133 KIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVSWTAIISGYIGVG 192

Query: 377 LFDDSTALYGQMHHLGVRPDKFTFPFVLKACT---DIWVGAEIHVHVIKFGLDFDPRART 547
            F ++  ++ ++  + + PD FT   VL ACT   D+  G  IH  +++ G+  +    T
Sbjct: 193 KFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMGMVRNVFVGT 252

Query: 548 ELMIMYVKFGELGSADYLFKSMIERDLVAWNALISVYVQNGHAYRALNLFHQMDLMGIKP 727
            L+ MY K G +  A  +F  M E+D+V+W A+I  Y  NG    A++LF QM    +KP
Sbjct: 253 SLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENVKP 312

Query: 728 DSVTFVSVLSACAHLGCLENGKKIDRIVVEEELNRNLFINNARLDMYAKCGSINVARNLF 907
           D  T V VLSACA LG LE G+ +  +V   E   N  +  A +D+YAKCGS++ A  +F
Sbjct: 313 DCYTVVGVLSACARLGALELGEWVSGLVDRNEFLYNPVLGTALIDLYAKCGSMSRAWEVF 372

Query: 908 DDMPQRNVISWSTIIGGYAVNG 973
             M +++ + W+ II G A+NG
Sbjct: 373 KGMKEKDRVVWNAIISGLAMNG 394



 Score =  122 bits (307), Expect = 2e-25
 Identities = 85/297 (28%), Positives = 142/297 (47%), Gaps = 7/297 (2%)
 Frame = +2

Query: 119  NLSPFSQKQTFSSLLQHCSS--HPNQLKQIHALLLTTGLSIKNXXXXXXXXXXXXXGNVN 292
            NL+P S   T   +L  C+     N  + IH  ++  G+                 GN+ 
Sbjct: 208  NLAPDSF--TIVRVLSACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNME 265

Query: 293  YARHLFDEMHKPRPFLWNTLIKGYVKNELFDDSTALYGQMHHLGVRPDKFTFPFVLKACT 472
             AR +FD M +     W  +I+GY  N L  ++  L+ QM    V+PD +T   VL AC 
Sbjct: 266  KARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACA 325

Query: 473  DIW---VGAEIHVHVIKFGLDFDPRARTELMIMYVKFGELGSADYLFKSMIERDLVAWNA 643
             +    +G  +   V +    ++P   T L+ +Y K G +  A  +FK M E+D V WNA
Sbjct: 326  RLGALELGEWVSGLVDRNEFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMKEKDRVVWNA 385

Query: 644  LISVYVQNGHAYRALNLFHQMDLMGIKPDSVTFVSVLSACAHLGCLENGKK-IDRIVVEE 820
            +IS    NG+   +  LF Q++ +GIKPD  TF+ +L  C H G ++ G++  + +    
Sbjct: 386  IISGLAMNGYVKISFGLFGQVEKLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFF 445

Query: 821  ELNRNLFINNARLDMYAKCGSINVARNLFDDMP-QRNVISWSTIIGGYAVNGDSENA 988
             L  ++      +D+  + G ++ A  L  +MP + N I W  ++G   ++ D++ A
Sbjct: 446  SLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEANAIVWGALLGACRIHRDTQLA 502


>ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  221 bits (564), Expect = 3e-55
 Identities = 114/296 (38%), Positives = 174/296 (58%), Gaps = 3/296 (1%)
 Frame = +2

Query: 113 NPNLSPFSQKQTFSSLLQHCSSHPNQLKQIHALLLTTGLSIKNXXXXXXXXXXXXXGNVN 292
           +P    FS+     + L +  +  NQLK IHA LL   L   N             G+ N
Sbjct: 6   SPTSPVFSKALEIKNYLSNGLNFFNQLKHIHARLLRLHLDQDNYLLNLILCCALDFGSTN 65

Query: 293 YARHLFDEMHKPRPFLWNTLIKGYVKNELFDDSTALYGQMHHLGVRPDKFTFPFVLKACT 472
           Y++ +F ++ +P  FLWNT+I+G V  + FDD+  LYG M   G  P+ FT PFVLKAC 
Sbjct: 66  YSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACA 125

Query: 473 ---DIWVGAEIHVHVIKFGLDFDPRARTELMIMYVKFGELGSADYLFKSMIERDLVAWNA 643
              D+ +G +IH  ++K G D D   +T L+ +YVK      A  +F  + ++++V+W A
Sbjct: 126 RKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTA 185

Query: 644 LISVYVQNGHAYRALNLFHQMDLMGIKPDSVTFVSVLSACAHLGCLENGKKIDRIVVEEE 823
           +I+ Y+ +GH   A+  F ++  MG+KPDS + V VL+ACA LG   +G+ IDR + +  
Sbjct: 186 IITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSG 245

Query: 824 LNRNLFINNARLDMYAKCGSINVARNLFDDMPQRNVISWSTIIGGYAVNGDSENAL 991
           + RN+F+  + LDMY KCG++  A  +F  MP+++++SWST+I GYA NG  + AL
Sbjct: 246 MGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQAL 301



 Score =  146 bits (369), Expect = 1e-32
 Identities = 92/306 (30%), Positives = 151/306 (49%), Gaps = 5/306 (1%)
 Frame = +2

Query: 80  HKYSSLANTHFNPNLSPFSQKQTFSSLLQHCSSHPNQLK--QIHALLLTTGLSIKNXXXX 253
           H Y S+    F PN        T   +L+ C+   +     +IH+LL+  G         
Sbjct: 100 HLYGSMRGGGFLPN------NFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVKT 153

Query: 254 XXXXXXXXXGNVNYARHLFDEMHKPRPFLWNTLIKGYVKNELFDDSTALYGQMHHLGVRP 433
                     N + A  +FD++       W  +I GY+ +  F ++   + ++  +G++P
Sbjct: 154 SLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKP 213

Query: 434 DKFTFPFVLKACT---DIWVGAEIHVHVIKFGLDFDPRARTELMIMYVKFGELGSADYLF 604
           D F+   VL AC    D   G  I  ++   G+  +    T L+ MYVK G L  A+ +F
Sbjct: 214 DSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIF 273

Query: 605 KSMIERDLVAWNALISVYVQNGHAYRALNLFHQMDLMGIKPDSVTFVSVLSACAHLGCLE 784
            +M E+D+V+W+ +I  Y  NG   +AL+LF QM    +KPD  T V VLSACA LG L+
Sbjct: 274 SAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALD 333

Query: 785 NGKKIDRIVVEEELNRNLFINNARLDMYAKCGSINVARNLFDDMPQRNVISWSTIIGGYA 964
            G     ++   E   N  +  A +DMY+KCGS+  A  +F  M +++ + W+ ++ G +
Sbjct: 334 LGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKRKDRVVWNAMMVGLS 393

Query: 965 VNGDSE 982
           +NG ++
Sbjct: 394 MNGHAK 399



 Score =  108 bits (271), Expect = 3e-21
 Identities = 71/243 (29%), Positives = 120/243 (49%), Gaps = 7/243 (2%)
 Frame = +2

Query: 281 GNVNYARHLFDEMHKPRPFLWNTLIKGYVKNELFDDSTALYGQMHHLGVRPDKFTFPFVL 460
           GN+  A  +F  M +     W+T+I+GY  N L   +  L+ QM    ++PD +T   VL
Sbjct: 264 GNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVL 323

Query: 461 KACT-----DIWVGAEIHVHVIKFGLDFDPRARTELMIMYVKFGELGSADYLFKSMIERD 625
            AC      D+ + A   +   +F  +  P   T L+ MY K G +  A  +F +M  +D
Sbjct: 324 SACATLGALDLGIWASSLMDRNEFLSN--PVLGTALIDMYSKCGSVTQAWEIFTAMKRKD 381

Query: 626 LVAWNALISVYVQNGHAYRALNLFHQMDLMGIKPDSVTFVSVLSACAHLGCLENGKK-ID 802
            V WNA++     NGHA    +LF  ++  GI+PD  TF+ +L  C H G +  G++  +
Sbjct: 382 RVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFN 441

Query: 803 RIVVEEELNRNLFINNARLDMYAKCGSINVARNLFDDMPQR-NVISWSTIIGGYAVNGDS 979
            +     L  ++      +D+  + G +N A  L ++MP + N + W  ++GG  ++ D+
Sbjct: 442 NMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDT 501

Query: 980 ENA 988
             A
Sbjct: 502 HLA 504


>ref|XP_007010336.1| Pentatricopeptide repeat (PPR) superfamily protein, putative
           isoform 1 [Theobroma cacao]
           gi|590566803|ref|XP_007010337.1| Pentatricopeptide
           repeat (PPR) superfamily protein, putative isoform 1
           [Theobroma cacao] gi|508727249|gb|EOY19146.1|
           Pentatricopeptide repeat (PPR) superfamily protein,
           putative isoform 1 [Theobroma cacao]
           gi|508727250|gb|EOY19147.1| Pentatricopeptide repeat
           (PPR) superfamily protein, putative isoform 1 [Theobroma
           cacao]
          Length = 688

 Score =  212 bits (539), Expect = 2e-52
 Identities = 109/270 (40%), Positives = 164/270 (60%), Gaps = 3/270 (1%)
 Frame = +2

Query: 191 LKQIHALLLTTGLSIKNXXXXXXXXXXXXXGNVNYARHLFDEMHKPRPFLWNTLIKGYVK 370
           LKQ+HA L   GL   N             G  NYA  +F++  +P  +LWNT+I+G V 
Sbjct: 32  LKQVHAALFRLGLHQHNYLLNIILKATFHFGQTNYACLIFNQTKQPNIYLWNTMIQGLVS 91

Query: 371 NELFDDSTALYGQMHHLGVRPDKFTFPFVLKACT---DIWVGAEIHVHVIKFGLDFDPRA 541
            + F ++   Y  M   G  P+ FTFPFVLKA     D+ +G  IH  V+K G D D   
Sbjct: 92  GDCFLEAAQFYASMRSQGFLPNSFTFPFVLKAYARLLDLQLGIRIHALVVKLGFDCDIFV 151

Query: 542 RTELMIMYVKFGELGSADYLFKSMIERDLVAWNALISVYVQNGHAYRALNLFHQMDLMGI 721
           +T L+ +Y K G L  A  +F  + E+++V+W A+IS Y+  G    A+N+F ++  MG+
Sbjct: 152 KTGLLCLYAKCGCLDRAIKVFDDIPEKNVVSWTAMISGYIDVGRYREAVNMFSKLLEMGL 211

Query: 722 KPDSVTFVSVLSACAHLGCLENGKKIDRIVVEEELNRNLFINNARLDMYAKCGSINVARN 901
           +PDS + V VL+ACAHLG L +G+ IDR + +  L+R++F+  + +DMYAKCG++  AR 
Sbjct: 212 RPDSFSLVRVLAACAHLGDLNSGEWIDRSITQFGLSRDVFVATSVVDMYAKCGNMEKARL 271

Query: 902 LFDDMPQRNVISWSTIIGGYAVNGDSENAL 991
            FD +P++++++WST+I GYA NG  + AL
Sbjct: 272 AFDGIPEKDIVTWSTMIQGYASNGLPKEAL 301



 Score =  147 bits (372), Expect = 5e-33
 Identities = 84/262 (32%), Positives = 132/262 (50%), Gaps = 3/262 (1%)
 Frame = +2

Query: 197 QIHALLLTTGLSIKNXXXXXXXXXXXXXGNVNYARHLFDEMHKPRPFLWNTLIKGYVKNE 376
           +IHAL++  G                  G ++ A  +FD++ +     W  +I GY+   
Sbjct: 135 RIHALVVKLGFDCDIFVKTGLLCLYAKCGCLDRAIKVFDDIPEKNVVSWTAMISGYIDVG 194

Query: 377 LFDDSTALYGQMHHLGVRPDKFTFPFVLKACT---DIWVGAEIHVHVIKFGLDFDPRART 547
            + ++  ++ ++  +G+RPD F+   VL AC    D+  G  I   + +FGL  D    T
Sbjct: 195 RYREAVNMFSKLLEMGLRPDSFSLVRVLAACAHLGDLNSGEWIDRSITQFGLSRDVFVAT 254

Query: 548 ELMIMYVKFGELGSADYLFKSMIERDLVAWNALISVYVQNGHAYRALNLFHQMDLMGIKP 727
            ++ MY K G +  A   F  + E+D+V W+ +I  Y  NG    AL+LF QM    + P
Sbjct: 255 SVVDMYAKCGNMEKARLAFDGIPEKDIVTWSTMIQGYASNGLPKEALDLFFQMQKEKLAP 314

Query: 728 DSVTFVSVLSACAHLGCLENGKKIDRIVVEEELNRNLFINNARLDMYAKCGSINVARNLF 907
           D    V VLSACA LG LE G    +++   E   N  +  A +DM+AKCGSI  A  +F
Sbjct: 315 DCYVMVGVLSACARLGALELGDWASKLMDRAEFLSNPVLGTALIDMFAKCGSIAQAFEIF 374

Query: 908 DDMPQRNVISWSTIIGGYAVNG 973
             M +++++ W+  I G A+NG
Sbjct: 375 KRMKEKDLVVWNAAISGLAMNG 396



 Score =  117 bits (294), Expect = 6e-24
 Identities = 73/239 (30%), Positives = 119/239 (49%), Gaps = 5/239 (2%)
 Frame = +2

Query: 281 GNVNYARHLFDEMHKPRPFLWNTLIKGYVKNELFDDSTALYGQMHHLGVRPDKFTFPFVL 460
           GN+  AR  FD + +     W+T+I+GY  N L  ++  L+ QM    + PD +    VL
Sbjct: 264 GNMEKARLAFDGIPEKDIVTWSTMIQGYASNGLPKEALDLFFQMQKEKLAPDCYVMVGVL 323

Query: 461 KACTDIW---VGAEIHVHVIKFGLDFDPRARTELMIMYVKFGELGSADYLFKSMIERDLV 631
            AC  +    +G      + +     +P   T L+ M+ K G +  A  +FK M E+DLV
Sbjct: 324 SACARLGALELGDWASKLMDRAEFLSNPVLGTALIDMFAKCGSIAQAFEIFKRMKEKDLV 383

Query: 632 AWNALISVYVQNGHAYRALNLFHQMDLMGIKPDSVTFVSVLSACAHLGCLENGKK-IDRI 808
            WNA IS    NGH   A  LF QM+  G+ P+  TF+ +L  C H+G +++G +  D +
Sbjct: 384 VWNAAISGLAMNGHVKAAFGLFSQMEKSGVLPNGNTFIGLLCCCTHVGLVDDGHRYFDSM 443

Query: 809 VVEEELNRNLFINNARLDMYAKCGSINVARNLFDDMP-QRNVISWSTIIGGYAVNGDSE 982
                L   +      +D+  + G ++ A  L  +MP + N I W  ++GG  ++ D++
Sbjct: 444 SRVFSLTPTIEHYGCMVDLLGRAGLLDEAHQLIKNMPMEANSIVWGALLGGCRLHKDTQ 502


>gb|EXB41949.1| hypothetical protein L484_002200 [Morus notabilis]
          Length = 688

 Score =  211 bits (536), Expect = 5e-52
 Identities = 106/272 (38%), Positives = 158/272 (58%), Gaps = 3/272 (1%)
 Frame = +2

Query: 185 NQLKQIHALLLTTGLSIKNXXXXXXXXXXXXXGNVNYARHLFDEMHKPRPFLWNTLIKGY 364
           N LK +HA LL  GL   N             GN +Y   +F    +P  ++WNT+I+G 
Sbjct: 30  NHLKHVHASLLRLGLDQDNFLLNLFFRYAFDFGNTSYPLLVFRHTKQPNIYVWNTVIRGL 89

Query: 365 VKNELFDDSTALYGQMHHLGVRPDKFTFPFVLKAC---TDIWVGAEIHVHVIKFGLDFDP 535
           V +  FDD+   Y  M   G  P+ FTFPFVLKAC   +D  +G  IH HV+K G D D 
Sbjct: 90  VSSHCFDDAIDFYFSMRRQGFLPNGFTFPFVLKACARLSDFQLGLRIHTHVVKVGFDCDV 149

Query: 536 RARTELMIMYVKFGELGSADYLFKSMIERDLVAWNALISVYVQNGHAYRALNLFHQMDLM 715
             +T L+ +Y + G L  A  +F  + E+ +V+W ++IS Y+  G    A+++F +   +
Sbjct: 150 FVKTSLLSLYAQTGYLDRAHQVFDEIPEKSIVSWTSIISGYIGVGRFSEAVSMFRRSIEI 209

Query: 716 GIKPDSVTFVSVLSACAHLGCLENGKKIDRIVVEEELNRNLFINNARLDMYAKCGSINVA 895
           G++PD    V VLSAC   G L + + IDR + E  L RNLF+  + +DMYAKCG++  A
Sbjct: 210 GLRPDGYNLVRVLSACTQSGDLSSAEWIDRYLTENGLGRNLFVATSLVDMYAKCGNMEKA 269

Query: 896 RNLFDDMPQRNVISWSTIIGGYAVNGDSENAL 991
           R +FD MP+++V+ WS++I GY +NG ++ A+
Sbjct: 270 RIVFDGMPEKDVVCWSSMIQGYVLNGPAKEAV 301



 Score =  145 bits (365), Expect = 3e-32
 Identities = 93/311 (29%), Positives = 156/311 (50%), Gaps = 6/311 (1%)
 Frame = +2

Query: 59   IKLLFCTHKYSSLANTHFNPNLSPFSQKQ-TFSSLLQHCSSHPN-QLK-QIHALLLTTGL 229
            I+ L  +H +    + +F+     F     TF  +L+ C+   + QL  +IH  ++  G 
Sbjct: 86   IRGLVSSHCFDDAIDFYFSMRRQGFLPNGFTFPFVLKACARLSDFQLGLRIHTHVVKVGF 145

Query: 230  SIKNXXXXXXXXXXXXXGNVNYARHLFDEMHKPRPFLWNTLIKGYVKNELFDDSTALYGQ 409
                             G ++ A  +FDE+ +     W ++I GY+    F ++ +++ +
Sbjct: 146  DCDVFVKTSLLSLYAQTGYLDRAHQVFDEIPEKSIVSWTSIISGYIGVGRFSEAVSMFRR 205

Query: 410  MHHLGVRPDKFTFPFVLKACT---DIWVGAEIHVHVIKFGLDFDPRARTELMIMYVKFGE 580
               +G+RPD +    VL ACT   D+     I  ++ + GL  +    T L+ MY K G 
Sbjct: 206  SIEIGLRPDGYNLVRVLSACTQSGDLSSAEWIDRYLTENGLGRNLFVATSLVDMYAKCGN 265

Query: 581  LGSADYLFKSMIERDLVAWNALISVYVQNGHAYRALNLFHQMDLMGIKPDSVTFVSVLSA 760
            +  A  +F  M E+D+V W+++I  YV NG A  A+ LF QM   G+KPD    V + SA
Sbjct: 266  MEKARIVFDGMPEKDVVCWSSMIQGYVLNGPAKEAVELFLQMLKEGLKPDCFALVGLFSA 325

Query: 761  CAHLGCLENGKKIDRIVVEEELNRNLFINNARLDMYAKCGSINVARNLFDDMPQRNVISW 940
            CA LG LE G     ++  +E+     +    +DMYAKCGS+  A  +F ++ +++++SW
Sbjct: 326  CARLGALELGNWARSLIDNDEILSVPALGTTLIDMYAKCGSVVQAWEVFKELKEKDLVSW 385

Query: 941  STIIGGYAVNG 973
            +  I G A+NG
Sbjct: 386  NAAISGLAMNG 396



 Score =  120 bits (301), Expect = 9e-25
 Identities = 77/243 (31%), Positives = 126/243 (51%), Gaps = 7/243 (2%)
 Frame = +2

Query: 281 GNVNYARHLFDEMHKPRPFLWNTLIKGYVKNELFDDSTALYGQMHHLGVRPDKFTFPFVL 460
           GN+  AR +FD M +     W+++I+GYV N    ++  L+ QM   G++PD F    + 
Sbjct: 264 GNMEKARIVFDGMPEKDVVCWSSMIQGYVLNGPAKEAVELFLQMLKEGLKPDCFALVGLF 323

Query: 461 KACTDIWVGAEIHVHVIKFGLDFD-----PRARTELMIMYVKFGELGSADYLFKSMIERD 625
            AC  +  GA    +  +  +D D     P   T L+ MY K G +  A  +FK + E+D
Sbjct: 324 SACARL--GALELGNWARSLIDNDEILSVPALGTTLIDMYAKCGSVVQAWEVFKELKEKD 381

Query: 626 LVAWNALISVYVQNGHAYRALNLFHQMDLMGIKPDSVTFVSVLSACAHLGCLENGKK-ID 802
           LV+WNA IS    NGH   A  LF +M+   I+P+  TFV +LS CAH G ++ G++  +
Sbjct: 382 LVSWNAAISGLAMNGHVKAAFGLFGKMEKSAIQPNGNTFVGLLSGCAHAGLVDEGRRYFN 441

Query: 803 RIVVEEELNRNLFINNARLDMYAKCGSINVARNLFDDMPQR-NVISWSTIIGGYAVNGDS 979
            +     L  ++      +D+ ++ G +  A  L   MP + N + W  ++GG  ++ D+
Sbjct: 442 NMGSFFALAPSIEHYGCMVDLLSRAGLLGEAHELIKSMPMKANAVVWGALLGGCRIHRDT 501

Query: 980 ENA 988
           + A
Sbjct: 502 QLA 504



 Score = 82.8 bits (203), Expect = 2e-13
 Identities = 45/167 (26%), Positives = 84/167 (50%)
 Frame = +2

Query: 494 IHVHVIKFGLDFDPRARTELMIMYVKFGELGSADYLFKSMIERDLVAWNALISVYVQNGH 673
           +H  +++ GLD D             FG       +F+   + ++  WN +I   V +  
Sbjct: 35  VHASLLRLGLDQDNFLLNLFFRYAFDFGNTSYPLLVFRHTKQPNIYVWNTVIRGLVSSHC 94

Query: 674 AYRALNLFHQMDLMGIKPDSVTFVSVLSACAHLGCLENGKKIDRIVVEEELNRNLFINNA 853
              A++ +  M   G  P+  TF  VL ACA L   + G +I   VV+   + ++F+  +
Sbjct: 95  FDDAIDFYFSMRRQGFLPNGFTFPFVLKACARLSDFQLGLRIHTHVVKVGFDCDVFVKTS 154

Query: 854 RLDMYAKCGSINVARNLFDDMPQRNVISWSTIIGGYAVNGDSENALA 994
            L +YA+ G ++ A  +FD++P+++++SW++II GY   G    A++
Sbjct: 155 LLSLYAQTGYLDRAHQVFDEIPEKSIVSWTSIISGYIGVGRFSEAVS 201


>ref|XP_006429514.1| hypothetical protein CICLE_v10011209mg [Citrus clementina]
           gi|568855070|ref|XP_006481133.1| PREDICTED: putative
           pentatricopeptide repeat-containing protein
           At3g08820-like [Citrus sinensis]
           gi|557531571|gb|ESR42754.1| hypothetical protein
           CICLE_v10011209mg [Citrus clementina]
          Length = 688

 Score =  211 bits (536), Expect = 5e-52
 Identities = 106/271 (39%), Positives = 159/271 (58%), Gaps = 3/271 (1%)
 Frame = +2

Query: 188 QLKQIHALLLTTGLSIKNXXXXXXXXXXXXXGNVNYARHLFDEMHKPRPFLWNTLIKGYV 367
           QLK +HA+LL  GL   +             G  NY   +F +  +P  FL+NT+I+G+V
Sbjct: 31  QLKYVHAILLRVGLDQDSYLLNLLLRSCFHFGQTNYTHLIFSQTKEPNIFLYNTMIRGFV 90

Query: 368 KNELFDDSTALYGQMHHLGVRPDKFTFPFVLKACT---DIWVGAEIHVHVIKFGLDFDPR 538
            N+ F  +   Y  M + G  P  FTFPFVLKAC    D  +G   H  ++K GLD D  
Sbjct: 91  SNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEF 150

Query: 539 ARTELMIMYVKFGELGSADYLFKSMIERDLVAWNALISVYVQNGHAYRALNLFHQMDLMG 718
            +T L+ +YV  G L  A  +F  + ++++V+W A+IS Y+  G+   A+N+F ++   G
Sbjct: 151 VKTSLLNLYVHCGYLADALKVFDDIPDKNVVSWTAIISGYINEGNLEEAINMFRRLLHRG 210

Query: 719 IKPDSVTFVSVLSACAHLGCLENGKKIDRIVVEEELNRNLFINNARLDMYAKCGSINVAR 898
           +KPDS + V VL+AC  LG L   K I   V E  + RN+F+  + +D+YAKCG++  AR
Sbjct: 211 LKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGMGRNVFVATSLVDLYAKCGNMEKAR 270

Query: 899 NLFDDMPQRNVISWSTIIGGYAVNGDSENAL 991
            +FD MP+++++SWS++I GYA NG  + AL
Sbjct: 271 RVFDQMPEKDIVSWSSMIQGYASNGFPKEAL 301



 Score =  152 bits (384), Expect = 2e-34
 Identities = 91/301 (30%), Positives = 149/301 (49%), Gaps = 5/301 (1%)
 Frame = +2

Query: 86  YSSLANTHFNPNLSPFSQKQTFSSLLQHCS-SHPNQLK-QIHALLLTTGLSIKNXXXXXX 259
           Y+S+ N  F P         TF  +L+ C+  H  QL  + H+L++  GL          
Sbjct: 102 YNSMRNEGFLPT------NFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSL 155

Query: 260 XXXXXXXGNVNYARHLFDEMHKPRPFLWNTLIKGYVKNELFDDSTALYGQMHHLGVRPDK 439
                  G +  A  +FD++       W  +I GY+     +++  ++ ++ H G++PD 
Sbjct: 156 LNLYVHCGYLADALKVFDDIPDKNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDS 215

Query: 440 FTFPFVLKACT---DIWVGAEIHVHVIKFGLDFDPRARTELMIMYVKFGELGSADYLFKS 610
           F+   VL ACT   D+     IH +V + G+  +    T L+ +Y K G +  A  +F  
Sbjct: 216 FSIVRVLTACTQLGDLSTAKWIHGYVNEAGMGRNVFVATSLVDLYAKCGNMEKARRVFDQ 275

Query: 611 MIERDLVAWNALISVYVQNGHAYRALNLFHQMDLMGIKPDSVTFVSVLSACAHLGCLENG 790
           M E+D+V+W+++I  Y  NG    AL++F+ M    +KPD  T V VLSACA LG LE G
Sbjct: 276 MPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPDRYTMVGVLSACASLGALELG 335

Query: 791 KKIDRIVVEEELNRNLFINNARLDMYAKCGSINVARNLFDDMPQRNVISWSTIIGGYAVN 970
                 +   E   N  +    +DMYAKCG +  A  +F +M  ++ + W+ ++ G ++N
Sbjct: 336 VWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMN 395

Query: 971 G 973
           G
Sbjct: 396 G 396



 Score =  110 bits (276), Expect = 7e-22
 Identities = 66/232 (28%), Positives = 114/232 (49%), Gaps = 6/232 (2%)
 Frame = +2

Query: 281 GNVNYARHLFDEMHKPRPFLWNTLIKGYVKNELFDDSTALYGQMHHLGVRPDKFTFPFVL 460
           GN+  AR +FD+M +     W+++I+GY  N    ++  ++  M    ++PD++T   VL
Sbjct: 264 GNMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPDRYTMVGVL 323

Query: 461 KACTDIWVGAEIHVHVIKF----GLDFDPRARTELMIMYVKFGELGSADYLFKSMIERDL 628
            AC  +    E+ V    F        +P   T L+ MY K G +  A  +F+ M ++D 
Sbjct: 324 SACASLGA-LELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQ 382

Query: 629 VAWNALISVYVQNGHAYRALNLFHQMDLMGIKPDSVTFVSVLSACAHLGCLENGKKIDRI 808
           V WNA++S    NG+   A  +F Q++  GI+P+  TFV +L  C H G ++ G++    
Sbjct: 383 VVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNS 442

Query: 809 VVEE-ELNRNLFINNARLDMYAKCGSINVARNLFDDMP-QRNVISWSTIIGG 958
           +     L   +      +D+  + G ++ A  L   MP + N I W  ++ G
Sbjct: 443 MSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMPMEPNAIVWGALLAG 494


>ref|XP_006341113.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Solanum tuberosum]
          Length = 687

 Score =  210 bits (534), Expect = 8e-52
 Identities = 110/273 (40%), Positives = 163/273 (59%), Gaps = 4/273 (1%)
 Frame = +2

Query: 185 NQLKQIHALLLTTGLSIKNXXXXXXXXXXXXX-GNVNYARHLFDEMHKPRPFLWNTLIKG 361
           NQLK IHA L+ TG    N               N NYA+ +F++  +P  FL+NT+I+G
Sbjct: 28  NQLKHIHARLIRTGFDQNNYLLNLLLKFTLNNFNNPNYAKLVFNQTQEPNIFLYNTMIRG 87

Query: 362 YVKNELFDDSTALYGQMHHLGVRPDKFTFPFVLKACT---DIWVGAEIHVHVIKFGLDFD 532
            V N  F  S A +  M + G  P+ FTFPF+LK+CT   D  +G + H  V+K G D+D
Sbjct: 88  LVSNNCFHQSIAYFHGMRNEGFLPNNFTFPFLLKSCTRLSDFELGVKAHGLVVKGGFDYD 147

Query: 533 PRARTELMIMYVKFGELGSADYLFKSMIERDLVAWNALISVYVQNGHAYRALNLFHQMDL 712
              +T L+  Y + G L  A  +F  + E+++V+W A+++ Y+  G    A+ LF +   
Sbjct: 148 VFVKTGLVCFYARCGFLDDAHQMFDDIPEKNVVSWTAIMTGYIDFGKFKEAIGLFRRSLE 207

Query: 713 MGIKPDSVTFVSVLSACAHLGCLENGKKIDRIVVEEELNRNLFINNARLDMYAKCGSINV 892
           MG+ PDS T V VLSAC+ +G +  G+ I R  VE ++ RN+F+N   +DMYAKCG +  
Sbjct: 208 MGLSPDSFTLVRVLSACSRVGDVSAGEWIHRYAVEMDMGRNVFVNTGLVDMYAKCGEMAK 267

Query: 893 ARNLFDDMPQRNVISWSTIIGGYAVNGDSENAL 991
           AR +FD+M +++V+SWS +I GYAVNG  + A+
Sbjct: 268 AREVFDEMVEKDVVSWSAMIQGYAVNGLPKEAM 300



 Score =  149 bits (377), Expect = 1e-33
 Identities = 91/310 (29%), Positives = 154/310 (49%), Gaps = 5/310 (1%)
 Frame = +2

Query: 74   CTHKYSSLANTHFNPNLSPFSQKQTFSSLLQHCS--SHPNQLKQIHALLLTTGLSIKNXX 247
            C H+  S+A  H   N        TF  LL+ C+  S      + H L++  G       
Sbjct: 93   CFHQ--SIAYFHGMRNEGFLPNNFTFPFLLKSCTRLSDFELGVKAHGLVVKGGFDYDVFV 150

Query: 248  XXXXXXXXXXXGNVNYARHLFDEMHKPRPFLWNTLIKGYVKNELFDDSTALYGQMHHLGV 427
                       G ++ A  +FD++ +     W  ++ GY+    F ++  L+ +   +G+
Sbjct: 151  KTGLVCFYARCGFLDDAHQMFDDIPEKNVVSWTAIMTGYIDFGKFKEAIGLFRRSLEMGL 210

Query: 428  RPDKFTFPFVLKACT---DIWVGAEIHVHVIKFGLDFDPRARTELMIMYVKFGELGSADY 598
             PD FT   VL AC+   D+  G  IH + ++  +  +    T L+ MY K GE+  A  
Sbjct: 211  SPDSFTLVRVLSACSRVGDVSAGEWIHRYAVEMDMGRNVFVNTGLVDMYAKCGEMAKARE 270

Query: 599  LFKSMIERDLVAWNALISVYVQNGHAYRALNLFHQMDLMGIKPDSVTFVSVLSACAHLGC 778
            +F  M+E+D+V+W+A+I  Y  NG    A+ +F++M    ++PD  + V VLSACA LG 
Sbjct: 271  VFDEMVEKDVVSWSAMIQGYAVNGLPKEAMEVFYRMQRENVRPDCYSMVGVLSACARLGA 330

Query: 779  LENGKKIDRIVVEEELNRNLFINNARLDMYAKCGSINVARNLFDDMPQRNVISWSTIIGG 958
            LE G+   +++   E   N  +  A +DMYAKCG +  A  +F  M  ++ + W+ ++ G
Sbjct: 331  LEVGEWACKLMDMNEFLSNAVLGTALIDMYAKCGRMVSAWEIFKQMLVKDRVIWNAVVSG 390

Query: 959  YAVNGDSENA 988
             A++G  ++A
Sbjct: 391  LAMHGYVKSA 400



 Score =  113 bits (283), Expect = 1e-22
 Identities = 71/243 (29%), Positives = 125/243 (51%), Gaps = 7/243 (2%)
 Frame = +2

Query: 281 GNVNYARHLFDEMHKPRPFLWNTLIKGYVKNELFDDSTALYGQMHHLGVRPDKFTFPFVL 460
           G +  AR +FDEM +     W+ +I+GY  N L  ++  ++ +M    VRPD ++   VL
Sbjct: 263 GEMAKAREVFDEMVEKDVVSWSAMIQGYAVNGLPKEAMEVFYRMQRENVRPDCYSMVGVL 322

Query: 461 KACTDIWVGAEIHVHVIKFGLDFDPRAR-----TELMIMYVKFGELGSADYLFKSMIERD 625
            AC  +    E+     K  +D +         T L+ MY K G + SA  +FK M+ +D
Sbjct: 323 SACARLGA-LEVGEWACKL-MDMNEFLSNAVLGTALIDMYAKCGRMVSAWEIFKQMLVKD 380

Query: 626 LVAWNALISVYVQNGHAYRALNLFHQMDLMGIKPDSVTFVSVLSACAHLGCLENGKKIDR 805
            V WNA++S    +G+   A   F Q++ +GIKP+  TF+ +L AC H G +++G+K  +
Sbjct: 381 RVIWNAVVSGLAMHGYVKSAFCCFGQVEKLGIKPNGNTFIGLLCACTHAGLVDDGRKYFQ 440

Query: 806 IVVE-EELNRNLFINNARLDMYAKCGSINVARNLFDDMPQR-NVISWSTIIGGYAVNGDS 979
            +     L   +      +D+  + G ++ A +L + MP + N + W  ++ G  ++ D+
Sbjct: 441 SMTHLYSLEPAIEHYGCMVDLLGRAGLLDEAHSLIESMPMKANAVIWGALLSGCRLHRDT 500

Query: 980 ENA 988
           + A
Sbjct: 501 KLA 503


>ref|XP_004485987.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cicer arietinum]
          Length = 610

 Score =  206 bits (523), Expect = 2e-50
 Identities = 123/320 (38%), Positives = 183/320 (57%), Gaps = 17/320 (5%)
 Frame = +2

Query: 83  KYSSLANTHFNPNLSPFSQKQTFS------------SLLQHCSSHPNQLKQIHALLLTTG 226
           K SSL +T  N +LS F    T S            +LLQ+C+S  ++LKQIHA  +  G
Sbjct: 6   KLSSLFHTPKN-HLSSFITFSTTSENPTSHILTKCIALLQYCASSKHKLKQIHAFSIRHG 64

Query: 227 LSIKNXXXXXXXXXXXXX--GNVNYARHLFDEMHKPRPFLWNTLIKGYVKNELFDDSTAL 400
           + + N                 ++YA ++F  +H P  F WNT+I+GY +++    +   
Sbjct: 65  VPLNNPDMGKYLIFTVVSLSAPMSYAYNVFTLLHNPNVFTWNTMIRGYAESDNSSPALPF 124

Query: 401 YGQMHHLGVRPDKFTFPFVLKACT---DIWVGAEIHVHVIKFGLDFDPRARTELMIMYVK 571
           Y +M    V PD  T+PF+LKA +   ++  G  IH   I+ G +     R  L+ +Y  
Sbjct: 125 YRKMLVSCVEPDTHTYPFLLKAISKSLNVREGEAIHSVTIRNGFESLIFVRNSLLHIYAA 184

Query: 572 FGELGSADYLFKSMIERDLVAWNALISVYVQNGHAYRALNLFHQMDLMGIKPDSVTFVSV 751
            G+  SA  +F+ M ERDLVAWN++I+ +  NG    AL+LF +M L G++PD  T VS+
Sbjct: 185 CGDTESAYKVFELMGERDLVAWNSVINGFALNGKPNEALSLFREMSLEGVEPDGFTVVSL 244

Query: 752 LSACAHLGCLENGKKIDRIVVEEELNRNLFINNARLDMYAKCGSINVARNLFDDMPQRNV 931
           LSACA LG +E G+++   +++  L  NL +NN+ LD YAKCGSI  A+ +F +M +RNV
Sbjct: 245 LSACAELGAVELGRRVHVYLLKIGLTENLHVNNSLLDFYAKCGSIRQAQQVFSEMGERNV 304

Query: 932 ISWSTIIGGYAVNGDSENAL 991
           +SW+++I G AVNG  E AL
Sbjct: 305 VSWTSLIVGLAVNGFGEEAL 324



 Score =  125 bits (313), Expect = 3e-26
 Identities = 81/284 (28%), Positives = 135/284 (47%), Gaps = 7/284 (2%)
 Frame = +2

Query: 146 TFSSLLQHCSSHPN--QLKQIHALLLTTGLSIKNXXXXXXXXXXXXXGNVNYARHLFDEM 319
           T+  LL+  S   N  + + IH++ +  G                  G+   A  +F+ M
Sbjct: 139 TYPFLLKAISKSLNVREGEAIHSVTIRNGFESLIFVRNSLLHIYAACGDTESAYKVFELM 198

Query: 320 HKPRPFLWNTLIKGYVKNELFDDSTALYGQMHHLGVRPDKFTFPFVLKACTDIW---VGA 490
            +     WN++I G+  N   +++ +L+ +M   GV PD FT   +L AC ++    +G 
Sbjct: 199 GERDLVAWNSVINGFALNGKPNEALSLFREMSLEGVEPDGFTVVSLLSACAELGAVELGR 258

Query: 491 EIHVHVIKFGLDFDPRARTELMIMYVKFGELGSADYLFKSMIERDLVAWNALISVYVQNG 670
            +HV+++K GL  +      L+  Y K G +  A  +F  M ER++V+W +LI     NG
Sbjct: 259 RVHVYLLKIGLTENLHVNNSLLDFYAKCGSIRQAQQVFSEMGERNVVSWTSLIVGLAVNG 318

Query: 671 HAYRALNLFHQMDLMGIKPDSVTFVSVLSACAHLGCLENGKKIDRIVVEE-ELNRNLFIN 847
               AL LF  M+   + P  +TFV VL AC+H G L+ G    R + +E  +   +   
Sbjct: 319 FGEEALELFKDMERQELVPGEITFVGVLYACSHCGMLDEGFNYFRRMKDEYGIMPRIEHY 378

Query: 848 NARLDMYAKCGSINVARNLFDDMP-QRNVISWSTIIGGYAVNGD 976
              +D+ ++ G +  A     +MP Q N + W T++G   V GD
Sbjct: 379 GCMVDLLSRAGLVKQAYEYIQNMPMQPNAVIWRTLLGACTVYGD 422



 Score = 76.3 bits (186), Expect = 2e-11
 Identities = 43/170 (25%), Positives = 87/170 (51%), Gaps = 2/170 (1%)
 Frame = +2

Query: 491 EIHVHVIKFGLDFD-PRARTELMIMYVKFGELGSADY-LFKSMIERDLVAWNALISVYVQ 664
           +IH   I+ G+  + P     L+   V      S  Y +F  +   ++  WN +I  Y +
Sbjct: 55  QIHAFSIRHGVPLNNPDMGKYLIFTVVSLSAPMSYAYNVFTLLHNPNVFTWNTMIRGYAE 114

Query: 665 NGHAYRALNLFHQMDLMGIKPDSVTFVSVLSACAHLGCLENGKKIDRIVVEEELNRNLFI 844
           + ++  AL  + +M +  ++PD+ T+  +L A +    +  G+ I  + +       +F+
Sbjct: 115 SDNSSPALPFYRKMLVSCVEPDTHTYPFLLKAISKSLNVREGEAIHSVTIRNGFESLIFV 174

Query: 845 NNARLDMYAKCGSINVARNLFDDMPQRNVISWSTIIGGYAVNGDSENALA 994
            N+ L +YA CG    A  +F+ M +R++++W+++I G+A+NG    AL+
Sbjct: 175 RNSLLHIYAACGDTESAYKVFELMGERDLVAWNSVINGFALNGKPNEALS 224


>ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 727

 Score =  205 bits (521), Expect = 3e-50
 Identities = 113/304 (37%), Positives = 163/304 (53%), Gaps = 3/304 (0%)
 Frame = +2

Query: 89  SSLANTHFNPNLSPFSQKQTFSSLLQHCSSHPNQLKQIHALLLTTGLSIKNXXXXXXXXX 268
           S+L   HF  +   F+    ++SL+ + S+H   L QIH  L+ +GL             
Sbjct: 39  SALHPEHFVNHDHCFNSDSFYASLIDN-STHKRHLDQIHNRLVISGLQHNGFLMTKLVNG 97

Query: 269 XXXXGNVNYARHLFDEMHKPRPFLWNTLIKGYVKNELFDDSTALYGQMHHLGVRPDKFTF 448
               G + YAR LFDE   P  F+WN +I+ Y +N ++ D+  +Y  M   GV PD FTF
Sbjct: 98  SSNLGQICYARKLFDEFCYPDVFMWNAIIRSYSRNNMYRDTVEMYRWMRWTGVHPDGFTF 157

Query: 449 PFVLKACT---DIWVGAEIHVHVIKFGLDFDPRARTELMIMYVKFGELGSADYLFKSMIE 619
           P+VLKACT   D  +   IH  +IK+G   D   +  L+ +Y K G +G A  +F  +  
Sbjct: 158 PYVLKACTELLDFGLSCIIHGQIIKYGFGSDVFVQNGLVALYAKCGHIGVAKVVFDGLYH 217

Query: 620 RDLVAWNALISVYVQNGHAYRALNLFHQMDLMGIKPDSVTFVSVLSACAHLGCLENGKKI 799
           R +V+W ++IS Y QNG A  AL +F QM   G+KPD +  VS+L A   +  LE G+ I
Sbjct: 218 RTIVSWTSIISGYAQNGKAVEALRMFSQMRNNGVKPDWIALVSILRAYTDVDDLEQGRSI 277

Query: 800 DRIVVEEELNRNLFINNARLDMYAKCGSINVARNLFDDMPQRNVISWSTIIGGYAVNGDS 979
              V++  L     +  +    YAKCG + VA++ FD M   NVI W+ +I GYA NG +
Sbjct: 278 HGFVIKMGLEDEPALLISLTAFYAKCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHA 337

Query: 980 ENAL 991
           E A+
Sbjct: 338 EEAV 341



 Score =  166 bits (420), Expect = 1e-38
 Identities = 88/240 (36%), Positives = 134/240 (55%), Gaps = 3/240 (1%)
 Frame = +2

Query: 281 GNVNYARHLFDEMHKPRPFLWNTLIKGYVKNELFDDSTALYGQMHHLGVRPDKFTFPFVL 460
           G++  A+ +FD ++      W ++I GY +N    ++  ++ QM + GV+PD      +L
Sbjct: 203 GHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEALRMFSQMRNNGVKPDWIALVSIL 262

Query: 461 KACTDI---WVGAEIHVHVIKFGLDFDPRARTELMIMYVKFGELGSADYLFKSMIERDLV 631
           +A TD+     G  IH  VIK GL+ +P     L   Y K G +  A   F  M   +++
Sbjct: 263 RAYTDVDDLEQGRSIHGFVIKMGLEDEPALLISLTAFYAKCGLVTVAKSFFDQMKTTNVI 322

Query: 632 AWNALISVYVQNGHAYRALNLFHQMDLMGIKPDSVTFVSVLSACAHLGCLENGKKIDRIV 811
            WNA+IS Y +NGHA  A+NLFH M    IKPDSVT  S + A A +G LE  + +D  V
Sbjct: 323 MWNAMISGYAKNGHAEEAVNLFHYMISRNIKPDSVTVRSAVLASAQVGSLELAQWMDDYV 382

Query: 812 VEEELNRNLFINNARLDMYAKCGSINVARNLFDDMPQRNVISWSTIIGGYAVNGDSENAL 991
            +     ++F+N + +DMYAKCGS+  AR +FD    ++V+ WS +I GY ++G    A+
Sbjct: 383 SKSNYGSDIFVNTSLIDMYAKCGSVEFARRVFDRNSDKDVVMWSAMIMGYGLHGQGWEAI 442



 Score =  101 bits (251), Expect = 5e-19
 Identities = 65/259 (25%), Positives = 117/259 (45%), Gaps = 4/259 (1%)
 Frame = +2

Query: 188  QLKQIHALLLTTGLSIKNXXXXXXXXXXXXXGNVNYARHLFDEMHKPRPFLWNTLIKGYV 367
            Q + IH  ++  GL  +              G V  A+  FD+M      +WN +I GY 
Sbjct: 273  QGRSIHGFVIKMGLEDEPALLISLTAFYAKCGLVTVAKSFFDQMKTTNVIMWNAMISGYA 332

Query: 368  KNELFDDSTALYGQMHHLGVRPDKFTFPFVLKACTDIW---VGAEIHVHVIKFGLDFDPR 538
            KN   +++  L+  M    ++PD  T    + A   +    +   +  +V K     D  
Sbjct: 333  KNGHAEEAVNLFHYMISRNIKPDSVTVRSAVLASAQVGSLELAQWMDDYVSKSNYGSDIF 392

Query: 539  ARTELMIMYVKFGELGSADYLFKSMIERDLVAWNALISVYVQNGHAYRALNLFHQMDLMG 718
              T L+ MY K G +  A  +F    ++D+V W+A+I  Y  +G  + A+NL+H M   G
Sbjct: 393  VNTSLIDMYAKCGSVEFARRVFDRNSDKDVVMWSAMIMGYGLHGQGWEAINLYHVMKQAG 452

Query: 719  IKPDSVTFVSVLSACAHLGCLENGKKIDRIVVEEELNRNLFINNARLDMYAKCGSINVAR 898
            + P+ VTF+ +L+AC H G ++ G ++   + + E+       +  +D+  + G +  A 
Sbjct: 453  VFPNDVTFIGLLTACNHSGLVKEGWELFHCMKDFEIVPRNEHYSCVVDLLGRAGYLGEAC 512

Query: 899  NLFDDMP-QRNVISWSTII 952
                 +P +  V  W  ++
Sbjct: 513  AFIMKIPIEPGVSVWGALL 531


>ref|XP_004246883.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Solanum lycopersicum]
          Length = 688

 Score =  204 bits (520), Expect = 3e-50
 Identities = 109/273 (39%), Positives = 160/273 (58%), Gaps = 4/273 (1%)
 Frame = +2

Query: 185 NQLKQIHALLLTTGLSIKNXXXXXXXXXXXXX-GNVNYARHLFDEMHKPRPFLWNTLIKG 361
           NQLK IHA L+  G    N               N NYA+ +F++  +P  FL+NT+I+G
Sbjct: 28  NQLKHIHARLIRAGFDQNNYLLNLLLKFTLNNFNNPNYAKLVFNQAQEPNIFLYNTMIRG 87

Query: 362 YVKNELFDDSTALYGQMHHLGVRPDKFTFPFVLKACT---DIWVGAEIHVHVIKFGLDFD 532
            V N  F  S   +  M + G  P+ FTFPF+LK+CT   D  +G + H  V+K G D+D
Sbjct: 88  LVSNNCFHQSIEFFHGMRNEGFLPNNFTFPFLLKSCTRLSDFELGVKAHGLVVKGGFDYD 147

Query: 533 PRARTELMIMYVKFGELGSADYLFKSMIERDLVAWNALISVYVQNGHAYRALNLFHQMDL 712
              +T L+  Y + G L  A  +F  + E+++V+W A+I+ Y+  G    A++LF +   
Sbjct: 148 VFVKTGLVCFYARCGFLDDAHQMFDDIPEKNVVSWTAIITGYIDFGKFKEAIDLFRRSLE 207

Query: 713 MGIKPDSVTFVSVLSACAHLGCLENGKKIDRIVVEEELNRNLFINNARLDMYAKCGSINV 892
           MG+ PDS T V VLSAC+ +G +  G+ I    VE  + RN+F+N   +DMYAKCG +  
Sbjct: 208 MGLSPDSFTLVRVLSACSRVGDVSAGEWIHGYAVEMGIGRNVFVNTGLVDMYAKCGEMAK 267

Query: 893 ARNLFDDMPQRNVISWSTIIGGYAVNGDSENAL 991
           AR +FD+M +++V+SWS +I GYAVNG  + AL
Sbjct: 268 AREVFDEMVEKDVVSWSAMIQGYAVNGLPKEAL 300



 Score =  148 bits (374), Expect = 3e-33
 Identities = 93/315 (29%), Positives = 156/315 (49%), Gaps = 10/315 (3%)
 Frame = +2

Query: 74   CTHK----YSSLANTHFNPNLSPFSQKQTFSSLLQHCS--SHPNQLKQIHALLLTTGLSI 235
            C H+    +  + N  F PN        TF  LL+ C+  S      + H L++  G   
Sbjct: 93   CFHQSIEFFHGMRNEGFLPN------NFTFPFLLKSCTRLSDFELGVKAHGLVVKGGFDY 146

Query: 236  KNXXXXXXXXXXXXXGNVNYARHLFDEMHKPRPFLWNTLIKGYVKNELFDDSTALYGQMH 415
                           G ++ A  +FD++ +     W  +I GY+    F ++  L+ +  
Sbjct: 147  DVFVKTGLVCFYARCGFLDDAHQMFDDIPEKNVVSWTAIITGYIDFGKFKEAIDLFRRSL 206

Query: 416  HLGVRPDKFTFPFVLKACT---DIWVGAEIHVHVIKFGLDFDPRARTELMIMYVKFGELG 586
             +G+ PD FT   VL AC+   D+  G  IH + ++ G+  +    T L+ MY K GE+ 
Sbjct: 207  EMGLSPDSFTLVRVLSACSRVGDVSAGEWIHGYAVEMGIGRNVFVNTGLVDMYAKCGEMA 266

Query: 587  SADYLFKSMIERDLVAWNALISVYVQNGHAYRALNLFHQMDLMGIKPDSVTFVSVLSACA 766
             A  +F  M+E+D+V+W+A+I  Y  NG    AL +F+ M    ++PD  + V VLSAC+
Sbjct: 267  KAREVFDEMVEKDVVSWSAMIQGYAVNGLPKEALEVFYTMQRENVRPDCYSMVGVLSACS 326

Query: 767  HLGCLENGKKIDRIVVEEELNRNLFINNARLDMYAKCGSINVARNLFDDM-PQRNVISWS 943
             LG LE G+   +++   E   N  +  A +DMYAKCG +  A  +F  M  +++ + W+
Sbjct: 327  RLGALEVGEWASKLMDMNEFLSNAVLGTALIDMYAKCGRMVSAWEIFKQMLVKKDRVIWN 386

Query: 944  TIIGGYAVNGDSENA 988
             ++ G A++G  ++A
Sbjct: 387  AVLSGLAMHGYVKSA 401



 Score =  110 bits (276), Expect = 7e-22
 Identities = 71/248 (28%), Positives = 127/248 (51%), Gaps = 12/248 (4%)
 Frame = +2

Query: 281 GNVNYARHLFDEMHKPRPFLWNTLIKGYVKNELFDDSTALYGQMHHLGVRPDKFTFPFVL 460
           G +  AR +FDEM +     W+ +I+GY  N L  ++  ++  M    VRPD ++   VL
Sbjct: 263 GEMAKAREVFDEMVEKDVVSWSAMIQGYAVNGLPKEALEVFYTMQRENVRPDCYSMVGVL 322

Query: 461 KACTDI-------WVGAEIHVHVIKFGLDFDPRA--RTELMIMYVKFGELGSADYLFKSM 613
            AC+ +       W    + ++      +F   A   T L+ MY K G + SA  +FK M
Sbjct: 323 SACSRLGALEVGEWASKLMDMN------EFLSNAVLGTALIDMYAKCGRMVSAWEIFKQM 376

Query: 614 -IERDLVAWNALISVYVQNGHAYRALNLFHQMDLMGIKPDSVTFVSVLSACAHLGCLENG 790
            +++D V WNA++S    +G+   A   F Q++ +GIKP+  TF+ +L AC H G ++ G
Sbjct: 377 LVKKDRVIWNAVLSGLAMHGYVKSAFCCFSQVEKLGIKPNGNTFIGLLCACTHAGLVDEG 436

Query: 791 KKIDRIVVE-EELNRNLFINNARLDMYAKCGSINVARNLFDDMPQR-NVISWSTIIGGYA 964
           +K  + +     L  ++      +D+  + G ++ A +L + MP + N + W  ++ G  
Sbjct: 437 RKYFQSMTHLYSLEPSIEHYGCMVDLLGRAGLLDEAHSLIESMPMKANAVVWGALLSGCR 496

Query: 965 VNGDSENA 988
           ++ D++ A
Sbjct: 497 LHRDTKLA 504


>ref|XP_004305093.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Fragaria vesca subsp. vesca]
          Length = 688

 Score =  204 bits (519), Expect = 5e-50
 Identities = 103/271 (38%), Positives = 163/271 (60%), Gaps = 3/271 (1%)
 Frame = +2

Query: 188 QLKQIHALLLTTGLSIKNXXXXXXXXXXXXXGNVNYARHLFDEMHKPRPFLWNTLIKGYV 367
           QLK  HA LL  GL   N                NYA  +F    +P  +L+NT+I+G V
Sbjct: 31  QLKHAHARLLRLGLDQDNHLLTLLLRSAFDFRQTNYALLVFHRTAEPNVYLFNTIIRGLV 90

Query: 368 KNELFDDSTALYGQMHHLGVRPDKFTFPFVLKACT---DIWVGAEIHVHVIKFGLDFDPR 538
            +E ++D+  LYG M   G+ PD +TFPFVLKAC    D+ +G  +H  V+K G DFD  
Sbjct: 91  SHECWEDAIRLYGSMRTEGLFPDSYTFPFVLKACARRLDLQIGLSVHTLVVKTGFDFDVY 150

Query: 539 ARTELMIMYVKFGELGSADYLFKSMIERDLVAWNALISVYVQNGHAYRALNLFHQMDLMG 718
            +T L+ +Y K G +  A  +F  + E+ +V+W A++S Y+  G    A++ F ++  MG
Sbjct: 151 VKTSLLCLYAKCGYMEHAHKVFDDLPEKSVVSWTAIVSGYIGAGKFREAIDAFLRLLEMG 210

Query: 719 IKPDSVTFVSVLSACAHLGCLENGKKIDRIVVEEELNRNLFINNARLDMYAKCGSINVAR 898
           ++PDS++ V  +SAC+ LG L +G+ ID  + E  + RN+F+  + +D+YAKCG++  AR
Sbjct: 211 LRPDSLSLVRAISACSQLGDLRSGEWIDDYITEIGMARNVFVATSLVDLYAKCGNMEKAR 270

Query: 899 NLFDDMPQRNVISWSTIIGGYAVNGDSENAL 991
            +FD + +++V+ WS++I GYA+NG  + A+
Sbjct: 271 FVFDGIAEKDVVVWSSMIQGYALNGLPKEAV 301



 Score =  144 bits (363), Expect = 6e-32
 Identities = 82/286 (28%), Positives = 141/286 (49%), Gaps = 5/286 (1%)
 Frame = +2

Query: 131 FSQKQTFSSLLQHCSSHPNQL--KQIHALLLTTGLSIKNXXXXXXXXXXXXXGNVNYARH 304
           F    TF  +L+ C+   +      +H L++ TG                  G + +A  
Sbjct: 111 FPDSYTFPFVLKACARRLDLQIGLSVHTLVVKTGFDFDVYVKTSLLCLYAKCGYMEHAHK 170

Query: 305 LFDEMHKPRPFLWNTLIKGYVKNELFDDSTALYGQMHHLGVRPDKFTFPFVLKACT---D 475
           +FD++ +     W  ++ GY+    F ++   + ++  +G+RPD  +    + AC+   D
Sbjct: 171 VFDDLPEKSVVSWTAIVSGYIGAGKFREAIDAFLRLLEMGLRPDSLSLVRAISACSQLGD 230

Query: 476 IWVGAEIHVHVIKFGLDFDPRARTELMIMYVKFGELGSADYLFKSMIERDLVAWNALISV 655
           +  G  I  ++ + G+  +    T L+ +Y K G +  A ++F  + E+D+V W+++I  
Sbjct: 231 LRSGEWIDDYITEIGMARNVFVATSLVDLYAKCGNMEKARFVFDGIAEKDVVVWSSMIQG 290

Query: 656 YVQNGHAYRALNLFHQMDLMGIKPDSVTFVSVLSACAHLGCLENGKKIDRIVVEEELNRN 835
           Y  NG    A++LF QM    +KPD    V VLSACA LG L  G+    +V   E+  N
Sbjct: 291 YALNGLPKEAVDLFFQMQKENLKPDCYAMVGVLSACARLGALGLGEWASNLVDRNEIFNN 350

Query: 836 LFINNARLDMYAKCGSINVARNLFDDMPQRNVISWSTIIGGYAVNG 973
             +  A +DMYAKCGSI  A  +F  M +++ + W+  + G A+NG
Sbjct: 351 PVLGTALIDMYAKCGSIVQAWEVFKGMKKKDHVVWNAAMSGLAMNG 396



 Score =  105 bits (263), Expect = 2e-20
 Identities = 66/241 (27%), Positives = 119/241 (49%), Gaps = 5/241 (2%)
 Frame = +2

Query: 281 GNVNYARHLFDEMHKPRPFLWNTLIKGYVKNELFDDSTALYGQMHHLGVRPDKFTFPFVL 460
           GN+  AR +FD + +    +W+++I+GY  N L  ++  L+ QM    ++PD +    VL
Sbjct: 264 GNMEKARFVFDGIAEKDVVVWSSMIQGYALNGLPKEAVDLFFQMQKENLKPDCYAMVGVL 323

Query: 461 KACTDIW---VGAEIHVHVIKFGLDFDPRARTELMIMYVKFGELGSADYLFKSMIERDLV 631
            AC  +    +G      V +  +  +P   T L+ MY K G +  A  +FK M ++D V
Sbjct: 324 SACARLGALGLGEWASNLVDRNEIFNNPVLGTALIDMYAKCGSIVQAWEVFKGMKKKDHV 383

Query: 632 AWNALISVYVQNGHAYRALNLFHQMDLMGIKPDSVTFVSVLSACAHLGCLENGKK-IDRI 808
            WNA +S    NGH      LF Q++  G++    TF+ +L  C H G ++ G+   + +
Sbjct: 384 VWNAAMSGLAMNGHVKAVFGLFGQVEKYGVRATGNTFMGLLCGCCHAGLVDEGRSYFNSM 443

Query: 809 VVEEELNRNLFINNARLDMYAKCGSINVARNLFDDMPQR-NVISWSTIIGGYAVNGDSEN 985
                L   +      +D+  + G ++ A +L + M  + N + W  ++GG  ++ D++ 
Sbjct: 444 TRVYSLTPTIEHYGCMVDLLGRAGLLDEAYDLINSMSMKANSVVWGALLGGCRLHRDTQL 503

Query: 986 A 988
           A
Sbjct: 504 A 504


>ref|XP_004295634.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Fragaria vesca subsp. vesca]
          Length = 611

 Score =  204 bits (519), Expect = 5e-50
 Identities = 119/319 (37%), Positives = 180/319 (56%), Gaps = 17/319 (5%)
 Frame = +2

Query: 86  YSSLANTHF-----NPNLSPFSQK-------QTFSSLLQHCSSHPNQLKQIHALLLTTGL 229
           +SSLA+T       NP  + F  +       Q   +LLQ C+S  ++LKQIHA  +  G+
Sbjct: 7   HSSLAHTVTADLTQNPKTTSFPSQTPLPFILQKCIALLQSCASSNSKLKQIHAFSIRHGV 66

Query: 230 SIKNXXXXXXXXXXXXX--GNVNYARHLFDEMHKPRPFLWNTLIKGYVKNELFDDSTALY 403
            + N                 ++YA H+F ++  P  F WNT+I+GY +++       LY
Sbjct: 67  PLSNPDMGKHLIFTSVSLSSPMSYAHHIFSQIKHPNVFTWNTMIRGYAESQNPMPVIQLY 126

Query: 404 GQMHHLGVRPDKFTFPFVLKACT---DIWVGAEIHVHVIKFGLDFDPRARTELMIMYVKF 574
            QM    + PD  T+PF+LKA     D+  G ++H   ++ GL+     +  L+ +Y   
Sbjct: 127 RQMRVSCIEPDTHTYPFLLKAVAKLLDVREGEKVHCIALRNGLESLVFVKNALLHLYAVC 186

Query: 575 GELGSADYLFKSMIERDLVAWNALISVYVQNGHAYRALNLFHQMDLMGIKPDSVTFVSVL 754
           G++ SA  +F+SM ERDLVAWN++I+ +  NG    AL +F +M L G+ PD  T VS+L
Sbjct: 187 GQVESAHKVFESMSERDLVAWNSVINGFSLNGRPNEALTIFREMSLEGVVPDGFTMVSLL 246

Query: 755 SACAHLGCLENGKKIDRIVVEEELNRNLFINNARLDMYAKCGSINVARNLFDDMPQRNVI 934
            ACA LG L  G +I   +V+  L RN   +NA LD+YAKCGSI  A+ +F +M +R+V+
Sbjct: 247 GACAELGALALGGRIHVYMVKLGLTRNAHASNALLDVYAKCGSIREAQKVFGEMEERSVV 306

Query: 935 SWSTIIGGYAVNGDSENAL 991
           SW+ ++ G+AVNG  + AL
Sbjct: 307 SWTALVVGWAVNGFGKEAL 325



 Score =  131 bits (330), Expect = 4e-28
 Identities = 79/267 (29%), Positives = 131/267 (49%), Gaps = 5/267 (1%)
 Frame = +2

Query: 194 KQIHALLLTTGLSIKNXXXXXXXXXXXXXGNVNYARHLFDEMHKPRPFLWNTLIKGYVKN 373
           +++H + L  GL                 G V  A  +F+ M +     WN++I G+  N
Sbjct: 158 EKVHCIALRNGLESLVFVKNALLHLYAVCGQVESAHKVFESMSERDLVAWNSVINGFSLN 217

Query: 374 ELFDDSTALYGQMHHLGVRPDKFTFPFVLKACTDIW---VGAEIHVHVIKFGLDFDPRAR 544
              +++  ++ +M   GV PD FT   +L AC ++    +G  IHV+++K GL  +  A 
Sbjct: 218 GRPNEALTIFREMSLEGVVPDGFTMVSLLGACAELGALALGGRIHVYMVKLGLTRNAHAS 277

Query: 545 TELMIMYVKFGELGSADYLFKSMIERDLVAWNALISVYVQNGHAYRALNLFHQMDLMGIK 724
             L+ +Y K G +  A  +F  M ER +V+W AL+  +  NG    AL LF +    G+ 
Sbjct: 278 NALLDVYAKCGSIREAQKVFGEMEERSVVSWTALVVGWAVNGFGKEALELFKEFKAEGLV 337

Query: 725 PDSVTFVSVLSACAHLGCLENGKKIDRIVVEE-ELNRNLFINNARLDMYAKCGSINVARN 901
           P  +TFV VL A +H G ++ G +  R++ EE  +   +      +D+ A+ G +  A  
Sbjct: 338 PTEITFVGVLYAFSHCGMVDEGFEYFRMMKEEYGIVPRIEHYGCMVDLLARAGKVKEAYE 397

Query: 902 LFDDMP-QRNVISWSTIIGGYAVNGDS 979
              DMP Q N + W T++G   ++G S
Sbjct: 398 YIKDMPVQPNAVIWRTLLGACTIHGHS 424


>ref|XP_002323645.2| pentatricopeptide repeat-containing family protein [Populus
           trichocarpa] gi|550321449|gb|EEF05406.2|
           pentatricopeptide repeat-containing family protein
           [Populus trichocarpa]
          Length = 682

 Score =  202 bits (515), Expect = 1e-49
 Identities = 107/277 (38%), Positives = 160/277 (57%), Gaps = 3/277 (1%)
 Frame = +2

Query: 170 CSSHPNQLKQIHALLLTTGLSIKNXXXXXXXXXXXXXGNVNYARHLFDEMHKPRPFLWNT 349
           C  H   LK IHA LL  GL                 GN NY+  + D+  +P  FL+NT
Sbjct: 22  CLKH---LKHIHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEPNIFLFNT 78

Query: 350 LIKGYVKNELFDDSTALYGQMHHLGVRPDKFTFPFVLKACT---DIWVGAEIHVHVIKFG 520
           +I+G V N+ F +S  +Y  M   G+ PD FTFPFVLKAC    D  +G ++H  V+K G
Sbjct: 79  MIRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVVKAG 138

Query: 521 LDFDPRARTELMIMYVKFGELGSADYLFKSMIERDLVAWNALISVYVQNGHAYRALNLFH 700
            + D   +  L+ +Y K G + +A  +F  + +++  +W A IS YV  G    A+++F 
Sbjct: 139 CEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFR 198

Query: 701 QMDLMGIKPDSVTFVSVLSACAHLGCLENGKKIDRIVVEEELNRNLFINNARLDMYAKCG 880
           ++  MG++PDS + V VLSAC   G L +G+ ID  + E  + RN+F+  A +D Y KCG
Sbjct: 199 RLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMARNVFVATALVDFYGKCG 258

Query: 881 SINVARNLFDDMPQRNVISWSTIIGGYAVNGDSENAL 991
           ++  AR++FD M ++N++SWS++I GYA NG  + AL
Sbjct: 259 NMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEAL 295



 Score =  131 bits (329), Expect = 5e-28
 Identities = 79/268 (29%), Positives = 135/268 (50%), Gaps = 3/268 (1%)
 Frame = +2

Query: 197 QIHALLLTTGLSIKNXXXXXXXXXXXXXGNVNYARHLFDEMHKPRPFLWNTLIKGYVKNE 376
           ++H+L++  G                  G ++ A  +FD++       W   I GYV   
Sbjct: 129 KMHSLVVKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVG 188

Query: 377 LFDDSTALYGQMHHLGVRPDKFTFPFVLKACT---DIWVGAEIHVHVIKFGLDFDPRART 547
              ++  ++ ++  +G+RPD F+   VL AC    D+  G  I  ++ + G+  +    T
Sbjct: 189 KCREAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMARNVFVAT 248

Query: 548 ELMIMYVKFGELGSADYLFKSMIERDLVAWNALISVYVQNGHAYRALNLFHQMDLMGIKP 727
            L+  Y K G +  A  +F  M+E+++V+W+++I  Y  NG    AL+LF +M   G+KP
Sbjct: 249 ALVDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKP 308

Query: 728 DSVTFVSVLSACAHLGCLENGKKIDRIVVEEELNRNLFINNARLDMYAKCGSINVARNLF 907
           D    V VL +CA LG LE G     ++   E   N  +  A +DMYAKCG ++ A  +F
Sbjct: 309 DCYAMVGVLCSCARLGALELGDWASNLINGNEFLDNSVLGTALIDMYAKCGRMDRAWEVF 368

Query: 908 DDMPQRNVISWSTIIGGYAVNGDSENAL 991
             M +++ + W+  I G A++G  ++AL
Sbjct: 369 RGMRKKDRVVWNAAISGLAMSGHVKDAL 396



 Score =  119 bits (299), Expect = 1e-24
 Identities = 77/245 (31%), Positives = 124/245 (50%), Gaps = 11/245 (4%)
 Frame = +2

Query: 281 GNVNYARHLFDEMHKPRPFLWNTLIKGYVKNELFDDSTALYGQMHHLGVRPDKFTFPFVL 460
           GN+  AR +FD M +     W+++I+GY  N L  ++  L+ +M + G++PD +    VL
Sbjct: 258 GNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVL 317

Query: 461 KACTDI-------WVGAEIHVHVIKFGLDFDPRA--RTELMIMYVKFGELGSADYLFKSM 613
            +C  +       W    I+      G +F   +   T L+ MY K G +  A  +F+ M
Sbjct: 318 CSCARLGALELGDWASNLIN------GNEFLDNSVLGTALIDMYAKCGRMDRAWEVFRGM 371

Query: 614 IERDLVAWNALISVYVQNGHAYRALNLFHQMDLMGIKPDSVTFVSVLSACAHLGCLENGK 793
            ++D V WNA IS    +GH   AL LF QM+  GIKPD  TFV +L AC H G +E G+
Sbjct: 372 RKKDRVVWNAAISGLAMSGHVKDALGLFGQMEKSGIKPDRNTFVGLLCACTHAGLVEEGR 431

Query: 794 K-IDRIVVEEELNRNLFINNARLDMYAKCGSINVARNLFDDMP-QRNVISWSTIIGGYAV 967
           +  + +     L   +      +D+  + G ++ A  L   MP + N I W  ++GG  +
Sbjct: 432 RYFNSMECVYTLTPEIEHYGCMVDLLGRAGCLDEAHQLIKSMPMEANAIVWGALLGGCRL 491

Query: 968 NGDSE 982
           + D++
Sbjct: 492 HRDTQ 496