BLASTX nr result
ID: Akebia22_contig00025602
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Akebia22_contig00025602
(1008 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc... 69 2e-22
gb|ABD64923.1| hypothetical protein 24.t00067 [Brassica oleracea] 66 1e-21
gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana] 59 2e-19
dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thal... 59 2e-19
gb|AAD12028.1| putative non-LTR retroelement reverse transcripta... 55 6e-18
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ... 60 6e-18
gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse ... 51 2e-17
gb|AAP54617.2| retrotransposon protein, putative, unclassified [... 51 2e-17
gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptas... 63 5e-17
ref|XP_006485449.1| PREDICTED: uncharacterized protein LOC102621... 58 2e-16
ref|XP_006482658.1| PREDICTED: cytochrome P450 89A2-like [Citrus... 61 2e-16
gb|ABB46931.2| retrotransposon protein, putative, unclassified [... 65 3e-16
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam... 62 5e-16
emb|CAB40051.1| putative protein [Arabidopsis thaliana] gi|72677... 62 5e-16
gb|AAF97969.1|AC000103_19 F21J9.30 [Arabidopsis thaliana] 53 6e-16
gb|AAG03119.1|AC004133_13 F5A9.24 [Arabidopsis thaliana] 53 6e-16
ref|NP_001175161.1| Os07g0417700 [Oryza sativa Japonica Group] g... 60 8e-16
gb|ABA94593.2| retrotransposon protein, putative, unclassified [... 59 2e-15
emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulga... 50 2e-15
gb|EEE52364.1| hypothetical protein OsJ_34428 [Oryza sativa Japo... 59 2e-15
>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
Length = 1214
Score = 68.9 bits (167), Expect(4) = 2e-22
Identities = 37/104 (35%), Positives = 57/104 (54%), Gaps = 4/104 (3%)
Frame = +2
Query: 707 YFRHGKMLKDVNATLLCIIPKEENAKRLEEFKPIALCNFVYKI----XXXXXXXXXXXXV 874
+FR G++L N+T + ++PK+ NA R+ EF+PI+ CN +YK+ +
Sbjct: 492 FFRSGRLLGQWNSTAVTMVPKKPNADRITEFRPISCCNAIYKVISKLLARRLENILPLWI 551
Query: 875 FPHQSTFVKGRKI*DEVILAYEMVHNFHLSKSPKSICA*IDLRK 1006
P QS FVKGR + + V+LA E+V F + +DLRK
Sbjct: 552 SPSQSAFVKGRLLTENVLLATELVQGFGQANISSRGVLKVDLRK 595
Score = 43.9 bits (102), Expect(4) = 2e-22
Identities = 21/46 (45%), Positives = 26/46 (56%)
Frame = +3
Query: 588 KSLIFESPRNKAPGPDGFGMEFFTFFWDIVGKNVCDVVIDISDMGR 725
KS F P NK+PGPDG+ EFF W IVG ++ V + GR
Sbjct: 452 KSEFFALPSNKSPGPDGYTSEFFKKTWSIVGPSLIAAVQEFFRSGR 497
Score = 35.0 bits (79), Expect(4) = 2e-22
Identities = 22/68 (32%), Positives = 34/68 (50%)
Frame = +1
Query: 325 RKSRV*GLREGDRNSRFFYSSIASNIARNGIMELETNQGELIIDEDGRRARATRFYSRMF 504
+KSRV L+ GD N+ FF+ + + A N I L G I + D + F+ +F
Sbjct: 352 QKSRVLWLKCGDSNTTFFHRMMTARRAINEIHYLLDQTGRRIENTDELQTHCVDFFKELF 411
Query: 505 QNSSPNVS 528
+SS +S
Sbjct: 412 GSSSHLIS 419
Score = 25.0 bits (53), Expect(4) = 2e-22
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 92 GNPMLWSTHKLHAVKLALRAWNREYFDFVQYRNIQAKGN 208
G+ M + K +K +R +NRE++ ++ R +QA N
Sbjct: 274 GSAMFTLSKKSKFLKGTIRTFNREHYSGLEKRVVQAAQN 312
>gb|ABD64923.1| hypothetical protein 24.t00067 [Brassica oleracea]
Length = 381
Score = 65.9 bits (159), Expect(4) = 1e-21
Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 4/91 (4%)
Frame = +2
Query: 707 YFRHGKMLKDVNATLLCIIPKEENAKRLEEFKPIALCNFVY----KIXXXXXXXXXXXXV 874
+F G+ D+N T LC+IPK N +++F+PIALCN +Y KI +
Sbjct: 276 FFNTGEFYSDLNHTNLCLIPKITNPITMKDFRPIALCNVMYKIISKILSLCMKSILHFVI 335
Query: 875 FPHQSTFVKGRKI*DEVILAYEMVHNFHLSK 967
+QS F+ GR I D V LA+E+VH+ + K
Sbjct: 336 SENQSGFIPGRHITDNVFLAHEVVHSLKVRK 366
Score = 47.0 bits (110), Expect(4) = 1e-21
Identities = 23/64 (35%), Positives = 37/64 (57%)
Frame = +1
Query: 322 KRKSRV*GLREGDRNSRFFYSSIASNIARNGIMELETNQGELIIDEDGRRARATRFYSRM 501
+ KSR+ L GDRN RFF++S + A+N I+ ++ N GE + A R++S +
Sbjct: 139 RNKSRIQWLTYGDRNIRFFHASTKNRRAKNKILSIQNNLGEEVFGNKEISKEALRYFSEI 198
Query: 502 FQNS 513
F +S
Sbjct: 199 FTSS 202
Score = 36.6 bits (83), Expect(4) = 1e-21
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +3
Query: 597 IFESPRNKAPGPDGFGMEFFTFFWDIVGKNVCDVV 701
+F +APGPDG F+ +WDIVG V + V
Sbjct: 239 VFSIGATRAPGPDGLTASFYQTYWDIVGPAVVEEV 273
Score = 21.2 bits (43), Expect(4) = 1e-21
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +3
Query: 297 DEESFYRKKKKIKSL 341
DEE+F+R K +I+ L
Sbjct: 133 DEEAFWRNKSRIQWL 147
>gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana]
Length = 1161
Score = 58.9 bits (141), Expect(3) = 2e-19
Identities = 34/104 (32%), Positives = 51/104 (49%), Gaps = 4/104 (3%)
Frame = +2
Query: 707 YFRHGKMLKDVNATLLCIIPKEENAKRLEEFKPIALCNFVYK----IXXXXXXXXXXXXV 874
+F G + + NAT + +IPK A RL +F+P+A C +YK I V
Sbjct: 536 FFISGNLPRGFNATAITLIPKVTGADRLTQFRPVACCTTIYKVITRIISRRLKLFIDQAV 595
Query: 875 FPHQSTFVKGRKI*DEVILAYEMVHNFHLSKSPKSICA*IDLRK 1006
+Q F+KGR + + V+LA E+V NF C +D+ K
Sbjct: 596 QANQVGFIKGRLLCENVLLASELVDNFEADGETTRGCLQVDISK 639
Score = 44.3 bits (103), Expect(3) = 2e-19
Identities = 19/32 (59%), Positives = 23/32 (71%)
Frame = +3
Query: 594 LIFESPRNKAPGPDGFGMEFFTFFWDIVGKNV 689
++F PRNKAPGPDGF +EFF W IV +V
Sbjct: 498 VLFSMPRNKAPGPDGFPVEFFIEAWAIVKSSV 529
Score = 40.4 bits (93), Expect(3) = 2e-19
Identities = 25/80 (31%), Positives = 44/80 (55%)
Frame = +1
Query: 322 KRKSRV*GLREGDRNSRFFYSSIASNIARNGIMELETNQGELIIDEDGRRARATRFYSRM 501
++KSR+ L EGD N+RFF+ ++ ++ A N I L + G + + D + +YS +
Sbjct: 395 RQKSRIRWLHEGDANTRFFHRAVIAHQATNLIKFLRGDDGFRVENVDQIKGMLIAYYSHL 454
Query: 502 FQNSSPNVSFQIPFNSKFIE 561
S NV+ PF+ + I+
Sbjct: 455 LGIPSENVT---PFSVEKIK 471
>dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thaliana]
Length = 910
Score = 58.9 bits (141), Expect(3) = 2e-19
Identities = 34/104 (32%), Positives = 51/104 (49%), Gaps = 4/104 (3%)
Frame = +2
Query: 707 YFRHGKMLKDVNATLLCIIPKEENAKRLEEFKPIALCNFVYK----IXXXXXXXXXXXXV 874
+F G + + NAT + +IPK A RL +F+P+A C +YK I V
Sbjct: 493 FFISGNLPRGFNATAITLIPKVTGADRLTQFRPVACCTTIYKVITRIISRRLKLFIDQAV 552
Query: 875 FPHQSTFVKGRKI*DEVILAYEMVHNFHLSKSPKSICA*IDLRK 1006
+Q F+KGR + + V+LA E+V NF C +D+ K
Sbjct: 553 QANQVGFIKGRLLCENVLLASELVDNFEADGETTRGCLQVDISK 596
Score = 44.3 bits (103), Expect(3) = 2e-19
Identities = 19/32 (59%), Positives = 23/32 (71%)
Frame = +3
Query: 594 LIFESPRNKAPGPDGFGMEFFTFFWDIVGKNV 689
++F PRNKAPGPDGF +EFF W IV +V
Sbjct: 455 VLFSMPRNKAPGPDGFPVEFFIEAWAIVKSSV 486
Score = 40.4 bits (93), Expect(3) = 2e-19
Identities = 25/80 (31%), Positives = 44/80 (55%)
Frame = +1
Query: 322 KRKSRV*GLREGDRNSRFFYSSIASNIARNGIMELETNQGELIIDEDGRRARATRFYSRM 501
++KSR+ L EGD N+RFF+ ++ ++ A N I L + G + + D + +YS +
Sbjct: 352 RQKSRIRWLHEGDANTRFFHRAVIAHQATNLIKFLRGDDGFRVENVDQIKGMLIAYYSHL 411
Query: 502 FQNSSPNVSFQIPFNSKFIE 561
S NV+ PF+ + I+
Sbjct: 412 LGIPSENVT---PFSVEKIK 428
>gb|AAD12028.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1447
Score = 55.5 bits (132), Expect(3) = 6e-18
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Frame = +2
Query: 677 GEECL*CSYRYFRHGKMLKDVNATLLCIIPKEENAKRLEEFKPIALCNFVY----KIXXX 844
G E + +F G + K +N T+L +IPK++ AK +++++PI+ CN +Y KI
Sbjct: 897 GNEFILAIQSFFAKGFLPKGINTTILALIPKKKEAKEMKDYRPISCCNVIYKVISKIIAN 956
Query: 845 XXXXXXXXXVFPHQSTFVKGRKI*DEVILA 934
+ +QS FVK R + + V+LA
Sbjct: 957 RLKLVPPKFIAGNQSAFVKDRLLIENVLLA 986
Score = 42.4 bits (98), Expect(3) = 6e-18
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = +3
Query: 588 KSLIFESPRNKAPGPDGFGMEFFTFFWDIVG 680
K ++F P +K+PGPDGF EFF W+I+G
Sbjct: 867 KKVLFSMPNDKSPGPDGFTSEFFKATWEILG 897
Score = 40.4 bits (93), Expect(3) = 6e-18
Identities = 19/62 (30%), Positives = 35/62 (56%)
Frame = +1
Query: 322 KRKSRV*GLREGDRNSRFFYSSIASNIARNGIMELETNQGELIIDEDGRRARATRFYSRM 501
K+KS++ L GD+N++ F+ ++ + A+N I E++ G + D +A A RF+
Sbjct: 766 KKKSKLHWLDGGDKNNKAFHRAVVTREAQNSISEIQCQDGSVTAKGDEIKAYAERFFREF 825
Query: 502 FQ 507
Q
Sbjct: 826 LQ 827
>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 1223
Score = 60.1 bits (144), Expect(3) = 6e-18
Identities = 33/114 (28%), Positives = 59/114 (51%), Gaps = 4/114 (3%)
Frame = +2
Query: 677 GEECL*CSYRYFRHGKMLKDVNATLLCIIPKEENAKRLEEFKPIALCNFVY----KIXXX 844
G+E +F G + K +N+T+L +IPK+ A+ +++++PI+ CN +Y KI
Sbjct: 489 GDEFTLAVQSFFTKGFLPKGINSTILALIPKKTEAREMKDYRPISCCNVLYKVISKIIAN 548
Query: 845 XXXXXXXXXVFPHQSTFVKGRKI*DEVILAYEMVHNFHLSKSPKSICA*IDLRK 1006
+ +QS FVK R + + ++LA E+V ++H ID+ K
Sbjct: 549 RLKLVLPKFIAGNQSAFVKDRLLIENLLLATELVKDYHKDTISTRCAIKIDISK 602
Score = 40.4 bits (93), Expect(3) = 6e-18
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = +3
Query: 588 KSLIFESPRNKAPGPDGFGMEFFTFFWDIVG 680
+ ++F P +K+PGPDG+ EFF W+I+G
Sbjct: 459 RKVLFRMPSDKSPGPDGYTSEFFKATWEIIG 489
Score = 37.7 bits (86), Expect(3) = 6e-18
Identities = 20/62 (32%), Positives = 35/62 (56%)
Frame = +1
Query: 322 KRKSRV*GLREGDRNSRFFYSSIASNIARNGIMELETNQGELIIDEDGRRARATRFYSRM 501
K+KS++ + GD+N++ F+ + A+ A N I E+ +N G + D +A A RF+
Sbjct: 358 KQKSKLHWCQVGDQNTKAFHRAAAAREAHNTIREILSNDGIVKTKGDEIKAEAERFFREF 417
Query: 502 FQ 507
Q
Sbjct: 418 LQ 419
>gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse transcriptase [Oryza sativa
Japonica Group]
Length = 1382
Score = 51.2 bits (121), Expect(3) = 2e-17
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Frame = +2
Query: 746 TLLCIIPKEENAKRLEEFKPIALCNFVYKI----XXXXXXXXXXXXVFPHQSTFVKGRKI 913
+++ +IPK NA L +F+PI+LCN +YKI V QS FV GR I
Sbjct: 503 SVVVLIPKVNNASHLSKFRPISLCNVLYKIASKVLANRLKPFLPDIVSEFQSAFVPGRLI 562
Query: 914 *DEVILAYEMVH 949
D ++AYE +H
Sbjct: 563 TDSALVAYECLH 574
Score = 46.6 bits (109), Expect(3) = 2e-17
Identities = 23/63 (36%), Positives = 37/63 (58%)
Frame = +1
Query: 322 KRKSRV*GLREGDRNSRFFYSSIASNIARNGIMELETNQGELIIDEDGRRARATRFYSRM 501
+++SRV LREGDRN+ FF++ ++ N I EL + G I ++G + A FY +
Sbjct: 353 RQRSRVDWLREGDRNTAFFHARASARRRTNRIKELVRDDGSRCISQEGIKRMAEVFYENL 412
Query: 502 FQN 510
F +
Sbjct: 413 FSS 415
Score = 38.9 bits (89), Expect(3) = 2e-17
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +3
Query: 588 KSLIFESPRNKAPGPDGFGMEFFTFFWDIVGKNVCDVV 701
K+ +F+ KAPGPDGF F+ W I+ +++C+ V
Sbjct: 450 KTALFQMGSTKAPGPDGFPALFYQTHWGILEEHICNAV 487
>gb|AAP54617.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group] gi|125575397|gb|EAZ16681.1| hypothetical
protein OsJ_32156 [Oryza sativa Japonica Group]
Length = 1339
Score = 51.2 bits (121), Expect(3) = 2e-17
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Frame = +2
Query: 746 TLLCIIPKEENAKRLEEFKPIALCNFVYKI----XXXXXXXXXXXXVFPHQSTFVKGRKI 913
+++ +IPK NA L +F+PI+LCN +YKI V QS FV GR I
Sbjct: 460 SVVVLIPKVNNASHLSKFRPISLCNVLYKIASKVLANRLKPFLPDIVSEFQSAFVPGRLI 519
Query: 914 *DEVILAYEMVH 949
D ++AYE +H
Sbjct: 520 TDSALVAYECLH 531
Score = 46.6 bits (109), Expect(3) = 2e-17
Identities = 23/63 (36%), Positives = 37/63 (58%)
Frame = +1
Query: 322 KRKSRV*GLREGDRNSRFFYSSIASNIARNGIMELETNQGELIIDEDGRRARATRFYSRM 501
+++SRV LREGDRN+ FF++ ++ N I EL + G I ++G + A FY +
Sbjct: 310 RQRSRVDWLREGDRNTAFFHARASARRRTNRIKELVRDDGSRCISQEGIKRMAEVFYENL 369
Query: 502 FQN 510
F +
Sbjct: 370 FSS 372
Score = 38.9 bits (89), Expect(3) = 2e-17
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +3
Query: 588 KSLIFESPRNKAPGPDGFGMEFFTFFWDIVGKNVCDVV 701
K+ +F+ KAPGPDGF F+ W I+ +++C+ V
Sbjct: 407 KTALFQMGSTKAPGPDGFPALFYQTHWGILEEHICNAV 444
>gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
truncatula]
Length = 402
Score = 62.8 bits (151), Expect(3) = 5e-17
Identities = 36/104 (34%), Positives = 55/104 (52%), Gaps = 4/104 (3%)
Frame = +2
Query: 707 YFRHGKMLKDVNATLLCIIPKEENAKRLEEFKPIALCNFVY----KIXXXXXXXXXXXXV 874
+F+ G M K +N T + ++PKE N ++ F+PIA C+ +Y KI V
Sbjct: 167 FFKTGFMPKIINCTYMTLLPKEVNVTSVKNFRPIACCSVIYKIISKILTSRMQGVLNSVV 226
Query: 875 FPHQSTFVKGRKI*DEVILAYEMVHNFHLSKSPKSICA*IDLRK 1006
+QS FVKGR I D +IL++E+V ++ IDL+K
Sbjct: 227 SENQSAFVKGRVIFDNIILSHELVKSYSRKGISPRCMVKIDLQK 270
Score = 43.9 bits (102), Expect(3) = 5e-17
Identities = 17/45 (37%), Positives = 28/45 (62%)
Frame = +3
Query: 588 KSLIFESPRNKAPGPDGFGMEFFTFFWDIVGKNVCDVVIDISDMG 722
K+++F +KAPG DG+ + FF W+I+G +V D ++D G
Sbjct: 127 KNVLFSMDSSKAPGIDGYNVHFFKCSWNIIGDSVIDAILDFFKTG 171
Score = 28.5 bits (62), Expect(3) = 5e-17
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = +1
Query: 325 RKSRV*GLREGDRNSRFFYSSIASNIARNGIMELETNQGELIIDEDGRRARATRFYSRMF 504
+KSR ++ GD N++FF++ +N I L T G I + + FY ++
Sbjct: 29 QKSRANWIQLGDSNTKFFHAYAKERRCQNNIKFLITEDGTRIDKHNLIKEEIRGFYLKLM 88
Query: 505 QNS 513
+S
Sbjct: 89 GSS 91
>ref|XP_006485449.1| PREDICTED: uncharacterized protein LOC102621413 [Citrus sinensis]
Length = 2303
Score = 57.8 bits (138), Expect(3) = 2e-16
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Frame = +2
Query: 719 GKMLKDVNATLLCIIPKEENAKRLEEFKPIALCNFVYKI----XXXXXXXXXXXXVFPHQ 886
G L +N T + +IPK K++ EF+PI+LCN +Y+I + P Q
Sbjct: 456 GGNLSALNHTFIALIPKTTKPKKVTEFRPISLCNVIYRIVAKTIANRLKPILSQIISPTQ 515
Query: 887 STFVKGRKI*DEVILAYEMVHNFHLSKSPK 976
S F+ R I D VI+ YE +H S+ K
Sbjct: 516 SAFIPNRLISDNVIIGYECLHKIRHSQGKK 545
Score = 45.8 bits (107), Expect(3) = 2e-16
Identities = 21/69 (30%), Positives = 39/69 (56%)
Frame = +1
Query: 322 KRKSRV*GLREGDRNSRFFYSSIASNIARNGIMELETNQGELIIDEDGRRARATRFYSRM 501
+++SR L+EGDRN+++F+S ++ +N I +E + G+ D+ ++ +
Sbjct: 313 RQRSRAEWLKEGDRNTKYFHSKASARRRKNKIWGIENSHGQWTEDQREVEKEFCEYFQNL 372
Query: 502 FQNSSPNVS 528
F SSPN S
Sbjct: 373 FTTSSPNQS 381
Score = 29.6 bits (65), Expect(3) = 2e-16
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +3
Query: 618 KAPGPDGFGMEFFTFFWDIVGKNVCDVVIDISDMG 722
KAPGPDG FF W V +V + I + G
Sbjct: 422 KAPGPDGLPAAFFQKHWQTVRSSVIGTCMHILNEG 456
>ref|XP_006482658.1| PREDICTED: cytochrome P450 89A2-like [Citrus sinensis]
Length = 809
Score = 61.2 bits (147), Expect(3) = 2e-16
Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Frame = +2
Query: 710 FRHGKMLKDVNATLLCIIPKEENAKRLEEFKPIALCNFVY----KIXXXXXXXXXXXXVF 877
F +LKD+N TLL +IPK ++ L+ ++PI+LC Y KI +
Sbjct: 717 FSSASILKDINTTLLVLIPKVDHPVNLKMYRPISLCTVAYKTISKIVANRLQALMPILIG 776
Query: 878 PHQSTFVKGRKI*DEVILAYEMVHNFHLSKSPK 976
P Q++FV GR I D +++A E++H+ K
Sbjct: 777 PQQTSFVPGRHITDNIVIAQEVIHSMRKKAGKK 809
Score = 41.6 bits (96), Expect(3) = 2e-16
Identities = 20/64 (31%), Positives = 36/64 (56%)
Frame = +1
Query: 325 RKSRV*GLREGDRNSRFFYSSIASNIARNGIMELETNQGELIIDEDGRRARATRFYSRMF 504
+KSR L +GDRN+ +F+ + RN I ++ GE I+D + + AT F+S ++
Sbjct: 580 QKSRKEWLIQGDRNTAYFHQKTLARRRRNRITTIQNANGEWIVDNEIIKQHATAFFSTLY 639
Query: 505 QNSS 516
+ +
Sbjct: 640 TSET 643
Score = 30.0 bits (66), Expect(3) = 2e-16
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +3
Query: 588 KSLIFESPRNKAPGPDGFGMEFFTFFWDIVGKNVCDVV 701
+ IF KAPG DG F+ W IVG + C +
Sbjct: 676 RQTIFSMKPLKAPGVDGLHAIFYQSQWHIVGHSFCKFI 713
>gb|ABB46931.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1853
Score = 65.1 bits (157), Expect(3) = 3e-16
Identities = 35/95 (36%), Positives = 52/95 (54%), Gaps = 4/95 (4%)
Frame = +2
Query: 707 YFRHGKMLKDVNATLLCIIPKEENAKRLEEFKPIALCNFVYKI----XXXXXXXXXXXXV 874
+F G M VN T + +IPK E + L++F+PI+LCN VYKI V
Sbjct: 1010 FFSLGTMPSGVNETAIVLIPKTEQPQELKDFRPISLCNVVYKIVSKCLVNRLRPILDDLV 1069
Query: 875 FPHQSTFVKGRKI*DEVILAYEMVHNFHLSKSPKS 979
+QS FV GR I D ++A+E H+ +K+P++
Sbjct: 1070 SQNQSAFVPGRLITDNALIAFEYFHHIQRNKNPEN 1104
Score = 37.4 bits (85), Expect(3) = 3e-16
Identities = 18/60 (30%), Positives = 32/60 (53%)
Frame = +1
Query: 325 RKSRV*GLREGDRNSRFFYSSIASNIARNGIMELETNQGELIIDEDGRRARATRFYSRMF 504
++SR+ L+EGDRN+RFF++ +N I +L + + AT ++ R+F
Sbjct: 874 QRSRIAWLKEGDRNTRFFHNKAVWRAKKNKITKLRDSDDTVHSTTKELERMATEYFQRLF 933
Score = 30.0 bits (66), Expect(3) = 3e-16
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 597 IFESPRNKAPGPDGFGMEFFTFFWDIVGKNVCDVVIDISDMG 722
+F+ KAPGPDGF F+ W I+ ++ V + +G
Sbjct: 973 LFQIGPLKAPGPDGFPGRFYQRNWAILKDDIVRAVQEFFSLG 1014
>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
42.57) [Arabidopsis thaliana]
Length = 1662
Score = 62.0 bits (149), Expect(3) = 5e-16
Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 4/91 (4%)
Frame = +2
Query: 707 YFRHGKMLKDVNATLLCIIPKEENAKRLEEFKPIALCNFVYKI----XXXXXXXXXXXXV 874
+FR M + +N T +C+IPK N + L +++PIALCN +YKI V
Sbjct: 856 FFRTSYMKQSINHTNICMIPKITNPETLSDYRPIALCNVLYKIISKCLVERLKGHLDAIV 915
Query: 875 FPHQSTFVKGRKI*DEVILAYEMVHNFHLSK 967
Q+ F+ GR + D V++A+EM+H+ K
Sbjct: 916 SDSQAAFIPGRLVNDNVMIAHEMMHSLKTRK 946
Score = 36.6 bits (83), Expect(3) = 5e-16
Identities = 16/69 (23%), Positives = 40/69 (57%)
Frame = +1
Query: 322 KRKSRV*GLREGDRNSRFFYSSIASNIARNGIMELETNQGELIIDEDGRRARATRFYSRM 501
++KSR ++EGDRN+ FF++ + + N ++ ++ +G + + A F++++
Sbjct: 719 QQKSRNQWMKEGDRNTEFFHACTKTRFSVNRLVTIKDEEGMIYRGDKEIGVHAQEFFTKV 778
Query: 502 FQNSSPNVS 528
++++ VS
Sbjct: 779 YESNGRPVS 787
Score = 33.1 bits (74), Expect(3) = 5e-16
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +3
Query: 615 NKAPGPDGFGMEFFTFFWDIVGKNV 689
+KAPGPDG F+ W+IVG +V
Sbjct: 825 DKAPGPDGLTARFYKSCWEIVGPDV 849
>emb|CAB40051.1| putative protein [Arabidopsis thaliana] gi|7267781|emb|CAB81184.1|
putative protein [Arabidopsis thaliana]
Length = 1294
Score = 62.0 bits (149), Expect(3) = 5e-16
Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 4/91 (4%)
Frame = +2
Query: 707 YFRHGKMLKDVNATLLCIIPKEENAKRLEEFKPIALCNFVYKI----XXXXXXXXXXXXV 874
+FR M + +N T +C+IPK N + L +++PIALCN +YKI V
Sbjct: 836 FFRTSYMKQSINHTNICMIPKITNPETLSDYRPIALCNVLYKIISKCLVERLKGHLDAIV 895
Query: 875 FPHQSTFVKGRKI*DEVILAYEMVHNFHLSK 967
Q+ F+ GR + D V++A+EM+H+ K
Sbjct: 896 SDSQAAFIPGRLVNDNVMIAHEMMHSLKTRK 926
Score = 36.6 bits (83), Expect(3) = 5e-16
Identities = 16/69 (23%), Positives = 40/69 (57%)
Frame = +1
Query: 322 KRKSRV*GLREGDRNSRFFYSSIASNIARNGIMELETNQGELIIDEDGRRARATRFYSRM 501
++KSR ++EGDRN+ FF++ + + N ++ ++ +G + + A F++++
Sbjct: 699 QQKSRNQWMKEGDRNTEFFHACTKTRFSVNRLVTIKDEEGMIYRGDKEIGVHAQEFFTKV 758
Query: 502 FQNSSPNVS 528
++++ VS
Sbjct: 759 YESNGRPVS 767
Score = 33.1 bits (74), Expect(3) = 5e-16
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +3
Query: 615 NKAPGPDGFGMEFFTFFWDIVGKNV 689
+KAPGPDG F+ W+IVG +V
Sbjct: 805 DKAPGPDGLTARFYKSCWEIVGPDV 829
>gb|AAF97969.1|AC000103_19 F21J9.30 [Arabidopsis thaliana]
Length = 1270
Score = 52.8 bits (125), Expect(3) = 6e-16
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Frame = +2
Query: 704 RYFRHGKMLKDVNATLLCIIPKEENAKRLEEFKPIALCNFVY----KIXXXXXXXXXXXX 871
++F G M + N T LC+IPK ++ + + +PI+LC+ +Y KI
Sbjct: 436 KFFADGIMPAEWNYTHLCLIPKTQHPTEMVDLRPISLCSVLYKIISKIMAKRLQPWLPEI 495
Query: 872 VFPHQSTFVKGRKI*DEVILAYEMVHN 952
V QS FV R I D +++A+E+VH+
Sbjct: 496 VSDTQSAFVSERLITDNILVAHELVHS 522
Score = 44.7 bits (104), Expect(3) = 6e-16
Identities = 21/67 (31%), Positives = 40/67 (59%)
Frame = +1
Query: 322 KRKSRV*GLREGDRNSRFFYSSIASNIARNGIMELETNQGELIIDEDGRRARATRFYSRM 501
K+KSR LR G+RNS++F++++ N R I +L+ G + E + A ++ +
Sbjct: 300 KQKSRQKWLRSGNRNSKYFHAAVKQNRQRKRIEKLKDVNGNMQTSEAAKGEVAAAYFGNL 359
Query: 502 FQNSSPN 522
F++S+P+
Sbjct: 360 FKSSNPS 366
Score = 33.9 bits (76), Expect(3) = 6e-16
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +3
Query: 588 KSLIFESPRNKAPGPDGFGMEFFTFFWDIVGKNVCDVV 701
K +F APGPDG FF +W VG V V
Sbjct: 397 KEAVFSIKPASAPGPDGMSALFFQHYWSTVGNQVTSEV 434
>gb|AAG03119.1|AC004133_13 F5A9.24 [Arabidopsis thaliana]
Length = 1254
Score = 52.8 bits (125), Expect(3) = 6e-16
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Frame = +2
Query: 704 RYFRHGKMLKDVNATLLCIIPKEENAKRLEEFKPIALCNFVY----KIXXXXXXXXXXXX 871
++F G M + N T LC+IPK ++ + + +PI+LC+ +Y KI
Sbjct: 439 KFFADGIMPAEWNYTHLCLIPKTQHPTEMVDLRPISLCSVLYKIISKIMAKRLQPWLPEI 498
Query: 872 VFPHQSTFVKGRKI*DEVILAYEMVHN 952
V QS FV R I D +++A+E+VH+
Sbjct: 499 VSDTQSAFVSERLITDNILVAHELVHS 525
Score = 44.7 bits (104), Expect(3) = 6e-16
Identities = 21/67 (31%), Positives = 40/67 (59%)
Frame = +1
Query: 322 KRKSRV*GLREGDRNSRFFYSSIASNIARNGIMELETNQGELIIDEDGRRARATRFYSRM 501
K+KSR LR G+RNS++F++++ N R I +L+ G + E + A ++ +
Sbjct: 303 KQKSRQKWLRSGNRNSKYFHAAVKQNRQRKRIEKLKDVNGNMQTSEAAKGEVAAAYFGNL 362
Query: 502 FQNSSPN 522
F++S+P+
Sbjct: 363 FKSSNPS 369
Score = 33.9 bits (76), Expect(3) = 6e-16
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +3
Query: 588 KSLIFESPRNKAPGPDGFGMEFFTFFWDIVGKNVCDVV 701
K +F APGPDG FF +W VG V V
Sbjct: 400 KEAVFSIKPASAPGPDGMSALFFQHYWSTVGNQVTSEV 437
>ref|NP_001175161.1| Os07g0417700 [Oryza sativa Japonica Group]
gi|255677700|dbj|BAH93889.1| Os07g0417700 [Oryza sativa
Japonica Group]
Length = 1011
Score = 60.5 bits (145), Expect(3) = 8e-16
Identities = 36/95 (37%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Frame = +2
Query: 707 YFRHGKMLKDVNATLLCIIPKEENAKRLEEFKPIALCN----FVYKIXXXXXXXXXXXXV 874
+F G M VN T + +IPK E +++F+PI+LCN FV K V
Sbjct: 166 FFLTGVMPSGVNNTAIVLIPKIEQPMEVKDFRPISLCNVLYKFVSKCLVNRLRPILDELV 225
Query: 875 FPHQSTFVKGRKI*DEVILAYEMVHNFHLSKSPKS 979
QS FV GR I D ILA+E H+ +K+P S
Sbjct: 226 SQSQSAFVPGRLITDNAILAFECFHSIQKNKNPNS 260
Score = 38.9 bits (89), Expect(3) = 8e-16
Identities = 20/64 (31%), Positives = 34/64 (53%)
Frame = +1
Query: 325 RKSRV*GLREGDRNSRFFYSSIASNIARNGIMELETNQGELIIDEDGRRARATRFYSRMF 504
++SR+ L+EGDRN+RFF+S +N I+ L + G + AT+++ M+
Sbjct: 30 QRSRINWLKEGDRNTRFFHSKAVWRAKKNIIVRLRDSGGTVQNSTTVMEDMATKYFQEMY 89
Query: 505 QNSS 516
S
Sbjct: 90 TADS 93
Score = 31.6 bits (70), Expect(3) = 8e-16
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 597 IFESPRNKAPGPDGFGMEFFTFFWDIVGKNVCDVV 701
+F+ KAPGPDGF F+ W ++ +++ VV
Sbjct: 129 VFQIGPLKAPGPDGFPARFYERNWGVLKEDIVRVV 163
>gb|ABA94593.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1469
Score = 59.3 bits (142), Expect(3) = 2e-15
Identities = 33/101 (32%), Positives = 55/101 (54%), Gaps = 5/101 (4%)
Frame = +2
Query: 701 YRYFRHGKMLKDVNATLLCIIPKEENAKRLEEFKPIALCNFVYKI----XXXXXXXXXXX 868
+ +F G M + +N T + +IPK + +L++++PI+LCN +YK+
Sbjct: 885 HNFFIIGVMPEGINDTAIVLIPKIKQPTQLKDYRPISLCNVIYKVVSKCLVNRLRPFLDE 944
Query: 869 XVFPHQSTFVKGRKI*DEVILAYEMVHNFHLSKSP-KSICA 988
V P+QS FV R I D ++A+E H +K+P K+ CA
Sbjct: 945 LVSPNQSAFVPERLITDNALVAFECFHFIQKNKNPNKAACA 985
Score = 39.7 bits (91), Expect(3) = 2e-15
Identities = 23/82 (28%), Positives = 42/82 (51%)
Frame = +1
Query: 325 RKSRV*GLREGDRNSRFFYSSIASNIARNGIMELETNQGELIIDEDGRRARATRFYSRMF 504
++SR+ L+EGDRN+RFF+S +N I L+ + G + AT ++ ++
Sbjct: 751 QRSRINWLKEGDRNTRFFHSKAVWRAKKNRIQSLKDSAGTVHRSATAMEQLATEYFQEVY 810
Query: 505 QNSSPNVSFQIPFNSKFIEENV 570
++ P++ I S F + V
Sbjct: 811 -SADPSLDHSIV--SSFFQSKV 829
Score = 30.8 bits (68), Expect(3) = 2e-15
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 597 IFESPRNKAPGPDGFGMEFFTFFWDIVGKNVCDVV 701
IF+ KAPGPDGF +F+ W + V V
Sbjct: 850 IFQIGPLKAPGPDGFSAKFYQRNWGTIKSEVVKAV 884
>emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1378
Score = 50.1 bits (118), Expect(3) = 2e-15
Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Frame = +2
Query: 740 NATLLCIIPKEENAKRLEEFKPIALCNFVYKI----XXXXXXXXXXXXVFPHQSTFVKGR 907
N T + +IPK + + + F+PI LCN VYKI + P Q +FV R
Sbjct: 492 NDTFIVLIPKMDIPQLAKHFRPIGLCNIVYKIVTKVIINRLKPILPSLISPTQCSFVPNR 551
Query: 908 KI*DEVILAYEMVHNFHLSKSPKSICA 988
+I D VI+ EM H+ + K A
Sbjct: 552 QITDNVIIVQEMFHSMRNKQGKKGFMA 578
Score = 41.2 bits (95), Expect(3) = 2e-15
Identities = 22/69 (31%), Positives = 37/69 (53%)
Frame = +1
Query: 325 RKSRV*GLREGDRNSRFFYSSIASNIARNGIMELETNQGELIIDEDGRRARATRFYSRMF 504
+KSR+ + +GDRN+R+F+ S +RN I L+ N GE I + +A ++ +F
Sbjct: 344 QKSRMEAICDGDRNTRYFHLSTVIRRSRNRIDMLQNNDGEWISNPMEVKAMVLGYWKHLF 403
Query: 505 QNSSPNVSF 531
S +F
Sbjct: 404 SEDSVQSNF 412
Score = 38.5 bits (88), Expect(3) = 2e-15
Identities = 17/31 (54%), Positives = 21/31 (67%)
Frame = +3
Query: 618 KAPGPDGFGMEFFTFFWDIVGKNVCDVVIDI 710
KAPGPDGF F+ FWD+V NV +V +I
Sbjct: 451 KAPGPDGFQPLFYQRFWDLVKPNVMHLVSEI 481
>gb|EEE52364.1| hypothetical protein OsJ_34428 [Oryza sativa Japonica Group]
Length = 1102
Score = 59.3 bits (142), Expect(3) = 2e-15
Identities = 33/101 (32%), Positives = 55/101 (54%), Gaps = 5/101 (4%)
Frame = +2
Query: 701 YRYFRHGKMLKDVNATLLCIIPKEENAKRLEEFKPIALCNFVYKI----XXXXXXXXXXX 868
+ +F G M + +N T + +IPK + +L++++PI+LCN +YK+
Sbjct: 892 HNFFIIGVMPEGINDTAIVLIPKIKQPTQLKDYRPISLCNVIYKVVSKCLVNRLRPFLDE 951
Query: 869 XVFPHQSTFVKGRKI*DEVILAYEMVHNFHLSKSP-KSICA 988
V P+QS FV R I D ++A+E H +K+P K+ CA
Sbjct: 952 LVSPNQSAFVPERLITDNALVAFECFHFIQKNKNPNKAACA 992
Score = 39.7 bits (91), Expect(3) = 2e-15
Identities = 23/82 (28%), Positives = 42/82 (51%)
Frame = +1
Query: 325 RKSRV*GLREGDRNSRFFYSSIASNIARNGIMELETNQGELIIDEDGRRARATRFYSRMF 504
++SR+ L+EGDRN+RFF+S +N I L+ + G + AT ++ ++
Sbjct: 758 QRSRINWLKEGDRNTRFFHSKAVWRAKKNRIQSLKDSAGTVHRSATAMEQLATEYFQEVY 817
Query: 505 QNSSPNVSFQIPFNSKFIEENV 570
++ P++ I S F + V
Sbjct: 818 -SADPSLDHSIV--SSFFQSKV 836
Score = 30.8 bits (68), Expect(3) = 2e-15
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 597 IFESPRNKAPGPDGFGMEFFTFFWDIVGKNVCDVV 701
IF+ KAPGPDGF +F+ W + V V
Sbjct: 857 IFQIGPLKAPGPDGFSAKFYQRNWGTIKSEVVKAV 891