BLASTX nr result

ID: Akebia22_contig00023964 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia22_contig00023964
         (1692 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...    88   6e-30
emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|72678...    84   5e-29
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]                88   1e-28
ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298...    89   1e-27
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,...    86   1e-24
gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thal...    97   4e-23
dbj|BAB01344.1| reverse transcriptase-like protein [Arabidopsis ...    93   5e-22
ref|XP_004173049.1| PREDICTED: putative ribonuclease H protein A...    55   6e-22
dbj|BAB08692.1| non-LTR retroelement reverse transcriptase-like ...    83   7e-22
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta...    82   4e-21
emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thal...    90   7e-21
gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]                 83   7e-20
dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana]            86   7e-20
gb|AAD15471.1| putative non-LTR retroelement reverse transcripta...    83   1e-19
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...    86   2e-19
dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like ...    85   2e-19
gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata sub...    83   3e-19
emb|CAB72467.1| putative protein [Arabidopsis thaliana]                86   5e-19
gb|ABK28140.1| unknown [Arabidopsis thaliana]                          79   5e-19
gb|ABE65398.1| hypothetical protein At1g43570 [Arabidopsis thali...    79   5e-19

>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1216

 Score = 87.8 bits (216), Expect(3) = 6e-30
 Identities = 45/158 (28%), Positives = 80/158 (50%), Gaps = 2/158 (1%)
 Frame = +2

Query: 182  QESAKRVESTSARFLWTGPSMSNKMHCISWKRIARDRKDGGLGFHELELQNKAGIARQVW 361
            +E    +   S+  LW+GP ++ K   +SW  I + +K+GGLG   L   NK    + +W
Sbjct: 554  RECINEINRISSALLWSGPELNPKKAKVSWDEICKPKKEGGLGLQSLREANKVSSLKLIW 613

Query: 362  DINSNKSSIWVDWIK-NMIKW*HFWTMPITNN-ASWMWRKILQLRETIQDLIVHRIGNGA 535
             + S + S+WV W + N++K   FW++   +   SW+WR++L+ RE  +      + NG 
Sbjct: 614  RLLSCQDSLWVKWTRMNLLKKESFWSIGTHSTLGSWIWRRLLKHREVAKSFCKIEVNNGV 673

Query: 536  DTFI*QDPWTAREGGWILNNNQQADSCDSRLHREAKIS 649
            +T    D W+  E G ++N      + D  + R   ++
Sbjct: 674  NTSFWFDNWS--EKGPLINLTGARGAIDMGISRHMTLA 709



 Score = 57.0 bits (136), Expect(3) = 6e-30
 Identities = 38/147 (25%), Positives = 63/147 (42%), Gaps = 6/147 (4%)
 Frame = +3

Query: 753  KDRVIWTLDP---KGLFTMKSAYKSIQVPFPQVR*HSLVWFPNNIKFHIATSWLCLSKGL 923
            +D ++W       K  F+ K  +  I+    Q   H  VWF +        +WL +   L
Sbjct: 744  EDAILWRGKEDVFKARFSTKDTWNHIRTSSNQRAWHKGVWFAHATPKFSFCAWLAIRNRL 803

Query: 924  KTQDKLKDKGIIQVSSC-FCRNSMEFEDHLFLGCKFSSNLWQKILRRSQIIHSNKEWREE 1100
             T D++        ++C FC + ME  DHLF  C +SS +W  I +       + +W   
Sbjct: 804  STGDRMMTWNNGTPTTCVFCSSPMETRDHLFFQCCYSSEIWTSIAKNVYKDRFSTKWSAV 863

Query: 1101 VEWVSNNFRD--DDFLGKKACLQRLHS 1175
            V ++S++  D    FL +      +HS
Sbjct: 864  VNYISDSQPDRIQSFLSRYTFQVSIHS 890



 Score = 35.4 bits (80), Expect(3) = 6e-30
 Identities = 15/45 (33%), Positives = 27/45 (60%)
 Frame = +3

Query: 60  KITSKIKTWKARFLLLAGRMELIK*VISSMQVYWSSVLMLPKKVL 194
           +I  +I  W +R+L  AGR+ LI  V+ S+  +W +   LP++ +
Sbjct: 513 QIRRRIGMWTSRYLSFAGRLSLINSVLWSITNFWMNAFRLPRECI 557


>emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|7267871|emb|CAB78214.1|
           putative protein [Arabidopsis thaliana]
          Length = 473

 Score = 83.6 bits (205), Expect(3) = 5e-29
 Identities = 43/157 (27%), Positives = 84/157 (53%), Gaps = 2/157 (1%)
 Frame = +2

Query: 182 QESAKRVESTSARFLWTGPSMSNKMHCISWKRIARDRKDGGLGFHELELQNKAGIARQVW 361
           ++  + ++   + +LW+G  ++     I+W  + + +++GGLG   L+  N     + +W
Sbjct: 82  RDCIREIDKMCSAYLWSGGELNTSKAKITWAFVCKPKEEGGLGLRSLKEANDVCCLKLIW 141

Query: 362 DINSNKSSIWVDWIK-NMIKW*HFWTM-PITNNASWMWRKILQLRETIQDLIVHRIGNGA 535
            I S+  S+WV WI+ +++K   FW +   T+  SWMWRKIL+ R+  + L    I NGA
Sbjct: 142 RIISHADSLWVKWIQSSLLKKVSFWAVRENTSLGSWMWRKILKFRDIARTLCKVEINNGA 201

Query: 536 DTFI*QDPWTAREGGWILNNNQQADSCDSRLHREAKI 646
            T    D W+  + G ++++     + D  +++ A +
Sbjct: 202 RTSFWYDDWS--DLGRLIDSAGDRGAIDLGINKHATV 236



 Score = 56.6 bits (135), Expect(3) = 5e-29
 Identities = 32/130 (24%), Positives = 59/130 (45%), Gaps = 4/130 (3%)
 Frame = +3

Query: 753  KDRVIWTLDP---KGLFTMKSAYKSIQVPFPQVR*HSLVWFPNNIKFHIATSWLCLSKGL 923
            +DR +W       + +F+ K  +  I+    +V  +  VWF   I  H    WL +   L
Sbjct: 271  EDRALWKGKENRFRSIFSTKDTWNHIRTVSNKVAWYKGVWFAQAIPKHAFCMWLAVHNRL 330

Query: 924  KTQDKLKDKGIIQVSSCF-CRNSMEFEDHLFLGCKFSSNLWQKILRRSQIIHSNKEWREE 1100
             T D++    +   ++C  C  ++E  DHLF  C F++ +W+ + +         +W+  
Sbjct: 331  STGDRMTLWNMGVDATCILCNKALESRDHLFFSCPFATEIWEPLAKTIYNTCFYTDWQTI 390

Query: 1101 VEWVSNNFRD 1130
            +  VS N+ D
Sbjct: 391  INNVSRNWPD 400



 Score = 37.0 bits (84), Expect(3) = 5e-29
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = +3

Query: 72  KIKTWKARFLLLAGRMELIK*VISSMQVYWSSVLMLPKKVLK 197
           KI +W ARFL  AGR+ LI  V+ S+  +W     LP+  ++
Sbjct: 45  KICSWSARFLSYAGRLNLISSVLWSICNFWMGAFRLPRDCIR 86


>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
          Length = 872

 Score = 88.2 bits (217), Expect(3) = 1e-28
 Identities = 45/158 (28%), Positives = 82/158 (51%), Gaps = 2/158 (1%)
 Frame = +2

Query: 182 QESAKRVESTSARFLWTGPSMSNKMHCISWKRIARDRKDGGLGFHELELQNKAGIARQVW 361
           ++  + ++   + FLW+G  MS+    ISW  + + + +GGLG   L+  N     + VW
Sbjct: 480 RQCIREIDKLCSSFLWSGSEMSSHKAKISWDIVCKPKAEGGLGLRNLKEANDVSCLKLVW 539

Query: 362 DINSNKSSIWVDWI-KNMIKW*HFWTM-PITNNASWMWRKILQLRETIQDLIVHRIGNGA 535
            I SN +S+W  W+ + +I+    W++   T+  SW+WRKIL++R+  +      +GNG 
Sbjct: 540 RIISNSNSLWTKWVAEYLIRKKSIWSLKQSTSMGSWIWRKILKIRDVAKSFSRVEVGNGE 599

Query: 536 DTFI*QDPWTAREGGWILNNNQQADSCDSRLHREAKIS 649
                 D W+A   G +++      + D  + REA ++
Sbjct: 600 SASFWYDHWSAH--GRLIDTVGDKGTIDLGIPREASVA 635



 Score = 49.7 bits (117), Expect(3) = 1e-28
 Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 6/132 (4%)
 Frame = +3

Query: 753  KDRVIWTLDP---KGLFTMKSAYKSIQVPFPQVR*HSLVWFPNNIKFHIATSWLCLSKGL 923
            +D V+W       K  F+ +  +  I+     V  H  VWF +    +   +WL +   L
Sbjct: 669  EDTVLWRGKNDVFKPHFSTRDTWHLIKATSSTVSWHKGVWFRHATPKYALCTWLAIHNRL 728

Query: 924  KTQDKL---KDKGIIQVSSCFCRNSMEFEDHLFLGCKFSSNLWQKILRRSQIIHSNKEWR 1094
             T D++      G +  +   C N+ +  +HLF  C ++S +W  + +       +  W 
Sbjct: 729  PTGDRMLKWNSSGSVSGNCVLCTNNSKTLEHLFFSCSYASTVWAALAKGIWKTRYSTRWS 788

Query: 1095 EEVEWVSNNFRD 1130
              +  +S +F+D
Sbjct: 789  HLLTHISTHFQD 800



 Score = 37.7 bits (86), Expect(3) = 1e-28
 Identities = 17/46 (36%), Positives = 27/46 (58%)
 Frame = +3

Query: 60  KITSKIKTWKARFLLLAGRMELIK*VISSMQVYWSSVLMLPKKVLK 197
           +I  +I TW  RF   AGR  LIK V+ S+  +W +   LP++ ++
Sbjct: 439 QIKKRIATWTFRFFSFAGRFNLIKSVLWSICNFWLAAFRLPRQCIR 484


>ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298394 [Fragaria vesca
            subsp. vesca]
          Length = 958

 Score = 88.6 bits (218), Expect(3) = 1e-27
 Identities = 42/124 (33%), Positives = 65/124 (52%), Gaps = 1/124 (0%)
 Frame = +2

Query: 194  KRVESTSARFLWTGPSMSNKMHCISWKRIARDRKDGGLGFHELELQNKAGIARQVWDINS 373
            K +E     FLW G         ++W  I   + +GGLG  +L   NKA +   +W++ S
Sbjct: 659  KDIEKRLRCFLWAGNCSGRAATKVAWSEICLPKCEGGLGIKDLHCWNKALMISHIWNLVS 718

Query: 374  NKSSIWVDWIK-NMIKW*HFWTMPITNNASWMWRKILQLRETIQDLIVHRIGNGADTFI* 550
            + S+ W DW+K  ++K   FW  P+ +  SW WRK+L++RE      V+ IG+G  T + 
Sbjct: 719  SSSNFWTDWVKVYLLKGNSFWNAPLPSICSWNWRKLLKIRELCCSFFVNIIGDGRATSLW 778

Query: 551  QDPW 562
             D W
Sbjct: 779  FDNW 782



 Score = 58.2 bits (139), Expect(3) = 1e-27
 Identities = 26/48 (54%), Positives = 40/48 (83%)
 Frame = +3

Query: 60  KITSKIKTWKARFLLLAGRMELIK*VISSMQVYWSSVLMLPKKVLKGL 203
           +I ++IK+W+ + L  AGR++LI+ V+SS+QVYW+S L+LPKKVLK +
Sbjct: 614 RIETRIKSWENKVLSFAGRLQLIQSVLSSIQVYWASHLILPKKVLKDI 661



 Score = 25.4 bits (54), Expect(3) = 1e-27
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 4   GCPPISSRLRLVDRQPLIPR*RVKLK 81
           G P I+S+LR+ D  PL+ R   ++K
Sbjct: 595 GIPLITSKLRMQDCSPLLDRIETRIK 620


>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
            [Arabidopsis thaliana]
          Length = 1164

 Score = 85.9 bits (211), Expect(3) = 1e-24
 Identities = 50/163 (30%), Positives = 78/163 (47%), Gaps = 2/163 (1%)
 Frame = +2

Query: 194  KRVESTSARFLWTGPSMSNKMHCISWKRIARDRKDGGLGFHELELQNKAGIARQVWDINS 373
            K++ES  +RFLW+       +  ++W ++   + +GG+G     + N+    R +W + S
Sbjct: 727  KKIESLCSRFLWSSRIDKKGIAKVAWSQVCLPKAEGGIGLRRFAVSNRTLYLRMIWLLFS 786

Query: 374  NKSSIWVDWIK--NMIKW*HFWTMPITNNASWMWRKILQLRETIQDLIVHRIGNGADTFI 547
            N  S+WV W K  ++ K   FW  P   + SW W+ +L+LR   +  I   +GNG D   
Sbjct: 787  NSGSLWVAWHKQHSLGKSTSFWNQPEKPHDSWNWKCLLRLRVVAERFIRCNVGNGRDASF 846

Query: 548  *QDPWTAREGGWILNNNQQADSCDSRLHREAKISSLSNDTCLS 676
              D WT    G ++         D R+H  AKIS    D C S
Sbjct: 847  WFDNWT--PFGPLIKFLGNEGPRDLRVHLNAKIS----DVCTS 883



 Score = 39.7 bits (91), Expect(3) = 1e-24
 Identities = 19/51 (37%), Positives = 30/51 (58%)
 Frame = +3

Query: 60  KITSKIKTWKARFLLLAGRMELIK*VISSMQVYWSSVLMLPKKVLKGLRVL 212
           KIT++  +W  R L  AGR++L+  VIS +  +W S  +LP   +K +  L
Sbjct: 682 KITARFNSWVVRLLSFAGRVQLLASVISGIVNFWISSFILPLGCIKKIESL 732



 Score = 36.6 bits (83), Expect(3) = 1e-24
 Identities = 30/106 (28%), Positives = 40/106 (37%), Gaps = 6/106 (5%)
 Frame = +3

Query: 741  DCSEKDRVIWTLDPK-----GLFTMKSAYKSIQVPFPQVR*HSLVWFPNNIKFHIATSWL 905
            D  + D   W +D K           SA +    P P  R    VWF      H    W 
Sbjct: 911  DAQDLDSYDWVVDNKVCQGFSAAATWSALRPSSAPVPWAR---AVWFKGATPKHAFHLWT 967

Query: 906  CLSKGLKTQDKLKDKGIIQVSSC-FCRNSMEFEDHLFLGCKFSSNL 1040
                 L T+ +L   G+   ++C  C    E  DHLFL C F++ L
Sbjct: 968  AHLDRLPTKVRLASWGMQIDTTCGLCSLHPETRDHLFLSCDFANFL 1013


>gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thaliana]
          Length = 629

 Score = 96.7 bits (239), Expect(2) = 4e-23
 Identities = 48/154 (31%), Positives = 81/154 (52%), Gaps = 2/154 (1%)
 Frame = +2

Query: 194 KRVESTSARFLWTGPSMSNKMHCISWKRIARDRKDGGLGFHELELQNKAGIARQVWDINS 373
           K + S  + FLW+GP +  +   +SW  I + +++GGLG   L   N   + + +W + S
Sbjct: 242 KEINSICSAFLWSGPELHRRKAKVSWDDICKPKQEGGLGLRSLTEANVVSVLKLIWRVTS 301

Query: 374 NKSSIWVDWIK-NMIKW*HFWTM-PITNNASWMWRKILQLRETIQDLIVHRIGNGADTFI 547
           N  S+WV W K N++K   FW++ P ++  SWMW+K+L+ RET +      + NGA T  
Sbjct: 302 NDDSLWVKWSKMNLLKQESFWSLTPNSSLGSWMWKKMLKYRETAKPFSRVEVNNGARTSF 361

Query: 548 *QDPWTAREGGWILNNNQQADSCDSRLHREAKIS 649
             D W+    G +++   Q    D  + R   ++
Sbjct: 362 WFDNWSGM--GHLMDVTGQRGQIDLGISRNKTVA 393



 Score = 40.4 bits (93), Expect(2) = 4e-23
 Identities = 19/46 (41%), Positives = 27/46 (58%)
 Frame = +3

Query: 60  KITSKIKTWKARFLLLAGRMELIK*VISSMQVYWSSVLMLPKKVLK 197
           +I ++I TW +R+L  AGR+ LI  V+ S   +W S   LP   LK
Sbjct: 197 QIRNRIGTWTSRYLSFAGRLNLISSVLWSTMNFWMSAFRLPSACLK 242


>dbj|BAB01344.1| reverse transcriptase-like protein [Arabidopsis thaliana]
          Length = 1115

 Score = 92.8 bits (229), Expect(2) = 5e-22
 Identities = 49/154 (31%), Positives = 80/154 (51%), Gaps = 2/154 (1%)
 Frame = +2

Query: 194  KRVESTSARFLWTGPSMSNKMHCISWKRIARDRKDGGLGFHELELQNKAGIARQVWDINS 373
            K + S  + FLW+GP ++ +   +SW  I +  K GGLG   L   N   + + +W + S
Sbjct: 754  KEINSICSAFLWSGPELNRRKAKVSWDDICKP-KQGGLGLRSLTEANVVSVLKLIWRVTS 812

Query: 374  NKSSIWVDWIK-NMIKW*HFWTM-PITNNASWMWRKILQLRETIQDLIVHRIGNGADTFI 547
            N  S+WV W K N++K   FW++ P ++  SWMW+K+L+ RET +      + NGA T  
Sbjct: 813  NDDSLWVKWSKMNLLKQESFWSLKPNSSLGSWMWKKMLKYRETAKPFSRVEVNNGARTSF 872

Query: 548  *QDPWTAREGGWILNNNQQADSCDSRLHREAKIS 649
              D W+    G +++   Q    D  + R   ++
Sbjct: 873  WFDNWSGM--GHLMDVTGQRGQIDLGISRNKTVA 904



 Score = 40.4 bits (93), Expect(2) = 5e-22
 Identities = 19/46 (41%), Positives = 27/46 (58%)
 Frame = +3

Query: 60  KITSKIKTWKARFLLLAGRMELIK*VISSMQVYWSSVLMLPKKVLK 197
           +I ++I TW +R+L  AGR+ LI  V+ S   +W S   LP   LK
Sbjct: 709 QIRNRIGTWTSRYLSFAGRLNLISSVLWSTMNFWMSAFRLPSACLK 754


>ref|XP_004173049.1| PREDICTED: putative ribonuclease H protein At1g65750-like, partial
           [Cucumis sativus]
          Length = 647

 Score = 55.1 bits (131), Expect(4) = 6e-22
 Identities = 35/152 (23%), Positives = 67/152 (44%), Gaps = 1/152 (0%)
 Frame = +2

Query: 194 KRVESTSARFLWTGPSMSNKMHCISWKRIARDRKDGGLGFHELELQNKAGIARQVWDINS 373
           K V+     +LW G         ++W  +     +GGL   +    NKA   + +W +  
Sbjct: 289 KDVDKILRSYLWRGKEEGRGGAKVAWDEVCLPFDEGGLAICDGSSWNKASTLKILWLLLV 348

Query: 374 NKSSIWVDWIK-NMIKW*HFWTMPITNNASWMWRKILQLRETIQDLIVHRIGNGADTFI* 550
              S+WV W++  ++K    W +      SW +R IL+ R+ ++  +  ++GN     + 
Sbjct: 349 KSGSLWVAWVEAYILKGRSLWEIDAGAGRSWCFRAILRKRDILKAHVEMKLGNVRKCRML 408

Query: 551 QDPWTAREGGWILNNNQQADSCDSRLHREAKI 646
            D W   +GG I+    +    D+   R+A++
Sbjct: 409 LDAWI--QGGMIIQLFGERVIYDAGSRRDARL 438



 Score = 53.9 bits (128), Expect(4) = 6e-22
 Identities = 24/45 (53%), Positives = 34/45 (75%)
 Frame = +3

Query: 63  ITSKIKTWKARFLLLAGRMELIK*VISSMQVYWSSVLMLPKKVLK 197
           ITS+I++W AR L  A  ++L++ V+ S+QVYW+SV MLP KV K
Sbjct: 245 ITSRIRSWSARVLSFASSLQLVRLVLRSLQVYWASVFMLPMKVHK 289



 Score = 42.7 bits (99), Expect(4) = 6e-22
 Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 4/107 (3%)
 Frame = +3

Query: 711  LWQQISALDFDCSEKDRVIWTLDPKGLFTMKSAYKSIQVPFPQVR*HSLVWFPNNIKFH- 887
            +W  I  +    S  DR +W       F++ SA+++I+    +V    L+W   NI    
Sbjct: 460  IWDMIQGVRLSPSVDDRWVWVSGRLDSFSIVSAWETIRPNSSRVGWSGLLWGGGNITVGR 519

Query: 888  -IATSWLCLSKGLKTQDKLK--DKGIIQVSSCFCRNSMEFEDHLFLG 1019
                +WL +   L T+D+L   D+  I +S   C  + E  DHL +G
Sbjct: 520  VYFCAWLAIRDRLGTRDRLSWWDR-FIPLSCMLCGGNYESRDHLLIG 565



 Score = 20.8 bits (42), Expect(4) = 6e-22
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 4   GCPPISSRLRLVDRQPLI 57
           G P +S RLR  D  PLI
Sbjct: 225 GLPLLSRRLRSSDCDPLI 242


>dbj|BAB08692.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana] gi|93007380|gb|ABE97193.1|
           hypothetical protein At5g13655 [Arabidopsis thaliana]
          Length = 385

 Score = 82.8 bits (203), Expect(2) = 7e-22
 Identities = 41/146 (28%), Positives = 80/146 (54%), Gaps = 2/146 (1%)
 Frame = +2

Query: 221 FLWTGPSMSNKMHCISWKRIARDRKDGGLGFHELELQNKAGIARQVWDINSNKSSIWVDW 400
           FLW+GPS++ +   ++W  +   + +GGLG   +E  NK  + + +W I S K S+WVDW
Sbjct: 5   FLWSGPSLNARKTKVAWSVVCTPKSEGGLGLRAVEETNKVCMLKLIWRILSAKGSLWVDW 64

Query: 401 I-KNMIKW*HFWTMPITNN-ASWMWRKILQLRETIQDLIVHRIGNGADTFI*QDPWTARE 574
           + K++++    W +  T++  SW+W+K+L+ R+  +      + NG  T    D W++  
Sbjct: 65  VKKHLLRGGSLWAVKETSSRGSWIWKKLLKYRDKAKCFHKVDVRNGESTSFWYDSWSSL- 123

Query: 575 GGWILNNNQQADSCDSRLHREAKISS 652
            G + +   +    D  + +++ +SS
Sbjct: 124 -GCLYDKFGERGCIDMGIPKDSTLSS 148



 Score = 50.1 bits (118), Expect(2) = 7e-22
 Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 4/121 (3%)
 Frame = +3

Query: 747  SEKDRVIWTLDPKGL---FTMKSAYKSIQVPFPQVR*HSLVWFPNNIKFHIATSWLCLSK 917
            +E+D  +W     G    F  K  +  I+   P+++ +  +WF N    +   +WL +  
Sbjct: 180  TERDVALWKGKEDGFHPTFLSKETWSQIRNTQPEMQGYRGIWFSNATPKYALLTWLMVRN 239

Query: 918  GLKTQDKLKDKGIIQVSSC-FCRNSMEFEDHLFLGCKFSSNLWQKILRRSQIIHSNKEWR 1094
             + T +K+        +SC FC+N  E  +HLF  C ++  +W  +++   +   +  W+
Sbjct: 240  RIATGEKMGLWNQNTDTSCIFCKNPNETREHLFFQCVYTRKVWNGLIKGLLLDKYSDRWQ 299

Query: 1095 E 1097
            +
Sbjct: 300  D 300


>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1352

 Score = 82.0 bits (201), Expect(2) = 4e-21
 Identities = 39/125 (31%), Positives = 70/125 (56%), Gaps = 2/125 (1%)
 Frame = +2

Query: 194  KRVESTSARFLWTGPSMSNKMHCISWKRIARDRKDGGLGFHELELQNKAGIARQVWDINS 373
            + +E   + FLW+GP ++ K   I+W  + + +++GGLG   L+  N+  + + +W I S
Sbjct: 984  QEIEKMFSAFLWSGPDLNTKKAKIAWSEVCKLKEEGGLGLKPLKEANEVSLLKLIWRILS 1043

Query: 374  NKSSIWVDWI-KNMIKW*HFWTM-PITNNASWMWRKILQLRETIQDLIVHRIGNGADTFI 547
             + S+WV W+ K++I+   FW++   T   SW+WRKIL+ R+  +      + +G  T  
Sbjct: 1044 ARDSLWVKWVNKHLIRKETFWSVKENTGLGSWLWRKILKQRDKARLFHRMEVRSGTFTSF 1103

Query: 548  *QDPW 562
              D W
Sbjct: 1104 WHDHW 1108



 Score = 48.1 bits (113), Expect(2) = 4e-21
 Identities = 23/46 (50%), Positives = 32/46 (69%)
 Frame = +3

Query: 60   KITSKIKTWKARFLLLAGRMELIK*VISSMQVYWSSVLMLPKKVLK 197
            KI ++I +W  RFL  AGR++LIK V+SS+  +W SV  LPK  L+
Sbjct: 939  KIRARITSWTNRFLSFAGRLQLIKSVLSSITNFWLSVFRLPKACLQ 984


>emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thaliana]
           gi|7267919|emb|CAB78261.1| putative reverse
           transcriptase [Arabidopsis thaliana]
          Length = 662

 Score = 89.7 bits (221), Expect(2) = 7e-21
 Identities = 39/131 (29%), Positives = 70/131 (53%), Gaps = 1/131 (0%)
 Frame = +2

Query: 182 QESAKRVESTSARFLWTGPSMSNKMHCISWKRIARDRKDGGLGFHELELQNKAGIARQVW 361
           +E  + ++   + FLW+GP +S     I+W+ + R +++GGLG   ++  N     + +W
Sbjct: 351 RECVREIDKLCSAFLWSGPELSTNKAKIAWETVCRPKREGGLGLQSIKEANDVCCLKLIW 410

Query: 362 DINSNKSSIWVDWIKN-MIKW*HFWTMPITNNASWMWRKILQLRETIQDLIVHRIGNGAD 538
            I S   S+WV WI+  ++K   FW+    +  SWMW+K+L+ R+T +      I NG  
Sbjct: 411 RIVSQGDSLWVQWIRTYLLKRNTFWSFRSASQGSWMWKKLLKYRDTAKAFSKVDIRNGET 470

Query: 539 TFI*QDPWTAR 571
                D W+++
Sbjct: 471 ASFWYDDWSSK 481



 Score = 39.7 bits (91), Expect(2) = 7e-21
 Identities = 18/46 (39%), Positives = 29/46 (63%)
 Frame = +3

Query: 60  KITSKIKTWKARFLLLAGRMELIK*VISSMQVYWSSVLMLPKKVLK 197
           +I  +I TW ARFL  AGR+ L+  V+ S+  +W S   LP++ ++
Sbjct: 310 QIKRRIGTWTARFLSYAGRLNLVSSVLWSICNFWLSAFRLPRECVR 355


>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
          Length = 740

 Score = 83.2 bits (204), Expect(2) = 7e-20
 Identities = 39/126 (30%), Positives = 71/126 (56%), Gaps = 2/126 (1%)
 Frame = +2

Query: 194 KRVESTSARFLWTGPSMSNKMHCISWKRIARDRKDGGLGFHELELQNKAGIARQVWDINS 373
           K +E   + FLW+GP ++ K   I+W  + + +++GGLG   L   NK    + +W + S
Sbjct: 410 KEIEKLCSAFLWSGPELNPKKAKITWTSLCKLKQEGGLGIKSLLEANKVSCLKLIWRLVS 469

Query: 374 NKSSIWVDWI-KNMIKW*HFWTMPITNN-ASWMWRKILQLRETIQDLIVHRIGNGADTFI 547
            +SS+WV+W+   +I+   FW+    ++  SWMW+K+L+ R+  + +    I +G+ T  
Sbjct: 470 RQSSLWVNWVWTYIIRKGSFWSANDRSSLGSWMWKKLLKYRDVAKSMCKVEIKSGSSTSF 529

Query: 548 *QDPWT 565
             D W+
Sbjct: 530 WYDNWS 535



 Score = 42.7 bits (99), Expect(2) = 7e-20
 Identities = 22/51 (43%), Positives = 29/51 (56%)
 Frame = +3

Query: 60  KITSKIKTWKARFLLLAGRMELIK*VISSMQVYWSSVLMLPKKVLKGLRVL 212
           K+ SKI +W AR L  AGR+ LI  VI S+  +W S   LP   +K +  L
Sbjct: 365 KVRSKISSWTARSLSYAGRLALINSVIVSLSNFWMSAYRLPAGCIKEIEKL 415


>dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana]
          Length = 478

 Score = 85.5 bits (210), Expect(2) = 7e-20
 Identities = 40/126 (31%), Positives = 72/126 (57%), Gaps = 2/126 (1%)
 Frame = +2

Query: 194 KRVESTSARFLWTGPSMSNKMHCISWKRIARDRKDGGLGFHELELQNKAGIARQVWDINS 373
           K ++S  + FLW+GP ++ K   ++W  +   + +GGLG   L+  NK  + + +W + S
Sbjct: 93  KEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLKLIWRMLS 152

Query: 374 NKSSIWVDWIK-NMIKW*HFWTMP-ITNNASWMWRKILQLRETIQDLIVHRIGNGADTFI 547
           + +S+WV W++  +++   FW++   T   SWMW+KIL+ R      + H I NG++T  
Sbjct: 153 S-TSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHRALASGFVKHDIHNGSNTSF 211

Query: 548 *QDPWT 565
             D W+
Sbjct: 212 WFDNWS 217



 Score = 40.4 bits (93), Expect(2) = 7e-20
 Identities = 20/46 (43%), Positives = 26/46 (56%)
 Frame = +3

Query: 60  KITSKIKTWKARFLLLAGRMELIK*VISSMQVYWSSVLMLPKKVLK 197
           KI  +I  W AR L  AGR++LI  VI S+  +W S   LP   +K
Sbjct: 48  KIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAFRLPSACIK 93


>gb|AAD15471.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1277

 Score = 82.8 bits (203), Expect(2) = 1e-19
 Identities = 39/126 (30%), Positives = 70/126 (55%), Gaps = 2/126 (1%)
 Frame = +2

Query: 194  KRVESTSARFLWTGPSMSNKMHCISWKRIARDRKDGGLGFHELELQNKAGIARQVWDINS 373
            K +E   + FLW+GP ++ K   I+W  + + +++GGLG   L   NK    + +W + S
Sbjct: 979  KEIEKLCSAFLWSGPELNPKKAKITWTSLCKLKQEGGLGIKSLLEANKVSCLKLIWRLVS 1038

Query: 374  NKSSIWVDWI-KNMIKW*HFWTMPITNN-ASWMWRKILQLRETIQDLIVHRIGNGADTFI 547
             +SS+WV+W+   +I+   FW+    ++  SWMW+K+L  R+  + +    I +G+ T  
Sbjct: 1039 RQSSLWVNWVWTYIIRKGSFWSANDRSSLGSWMWKKLLNYRDVAKSMCKVEIKSGSSTSF 1098

Query: 548  *QDPWT 565
              D W+
Sbjct: 1099 WYDNWS 1104



 Score = 42.7 bits (99), Expect(2) = 1e-19
 Identities = 22/51 (43%), Positives = 29/51 (56%)
 Frame = +3

Query: 60   KITSKIKTWKARFLLLAGRMELIK*VISSMQVYWSSVLMLPKKVLKGLRVL 212
            K+ SKI +W AR L  AGR+ LI  VI S+  +W S   LP   +K +  L
Sbjct: 934  KVRSKISSWTARSLSYAGRLALINSVIVSLSNFWMSAYRLPAGCIKEIEKL 984


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score = 85.5 bits (210), Expect(2) = 2e-19
 Identities = 40/126 (31%), Positives = 70/126 (55%), Gaps = 2/126 (1%)
 Frame = +2

Query: 194  KRVESTSARFLWTGPSMSNKMHCISWKRIARDRKDGGLGFHELELQNKAGIARQVWDINS 373
            + +E   + FLW+G  M++    ISW  + + + +GGLG   L+  N     + VW I S
Sbjct: 837  RELEKMCSAFLWSGTEMNSNKAKISWHMVCKPKDEGGLGLRSLKEANDVCCLKLVWKIVS 896

Query: 374  NKSSIWVDWI-KNMIKW*HFWTMPIT-NNASWMWRKILQLRETIQDLIVHRIGNGADTFI 547
            + +S+WV W+ +++++   FW +  T +  SW+W+K+L+ RE  + L    +GNG  T  
Sbjct: 897  HSNSLWVKWVDQHLLRNASFWEVKQTVSQGSWIWKKLLKYREVAKTLSKVEVGNGKQTSF 956

Query: 548  *QDPWT 565
              D W+
Sbjct: 957  WYDNWS 962



 Score = 38.9 bits (89), Expect(2) = 2e-19
 Identities = 17/48 (35%), Positives = 30/48 (62%)
 Frame = +3

Query: 60  KITSKIKTWKARFLLLAGRMELIK*VISSMQVYWSSVLMLPKKVLKGL 203
           ++  +I +W +RFL  AGR+ LI  V+ S+  +W +   LP+K ++ L
Sbjct: 792 QVRKRIGSWTSRFLSYAGRLNLISSVLWSICNFWLAAFRLPRKCIREL 839


>dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 489

 Score = 85.1 bits (209), Expect(2) = 2e-19
 Identities = 39/130 (30%), Positives = 68/130 (52%), Gaps = 2/130 (1%)
 Frame = +2

Query: 182 QESAKRVESTSARFLWTGPSMSNKMHCISWKRIARDRKDGGLGFHELELQNKAGIARQVW 361
           +E  + ++   + +LW+G  ++     I+W  + + + +GGLG   L+  N     + +W
Sbjct: 215 RECIREIDKMCSAYLWSGGDLNTSKAKIAWTDVCKPKDEGGLGLRSLKEANDVSCLKLIW 274

Query: 362 DINSNKSSIWVDWI-KNMIKW*HFWTM-PITNNASWMWRKILQLRETIQDLIVHRIGNGA 535
            I S+  S+WV WI   ++K   FW +   T+  SWMW+K+L+ R+    L    + NGA
Sbjct: 275 RIISHADSLWVKWIHATLLKQVSFWAVRENTSLGSWMWKKVLKFRDAAIQLCKAEVNNGA 334

Query: 536 DTFI*QDPWT 565
            TF   D W+
Sbjct: 335 HTFFWYDNWS 344



 Score = 39.3 bits (90), Expect(2) = 2e-19
 Identities = 18/45 (40%), Positives = 27/45 (60%)
 Frame = +3

Query: 63  ITSKIKTWKARFLLLAGRMELIK*VISSMQVYWSSVLMLPKKVLK 197
           I  KI +W ARFL  AGR+ LI  V+ S+  +W     LP++ ++
Sbjct: 175 IKKKIGSWSARFLSYAGRLNLISSVLWSICNFWMGAFRLPRECIR 219


>gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata subsp. lyrata]
          Length = 441

 Score = 83.2 bits (204), Expect(2) = 3e-19
 Identities = 40/126 (31%), Positives = 67/126 (53%), Gaps = 2/126 (1%)
 Frame = +2

Query: 194 KRVESTSARFLWTGPSMSNKMHCISWKRIARDRKDGGLGFHELELQNKAGIARQVWDINS 373
           K ++   + FLW+GP ++ K   +SW  +   +++GGLG   L   NK    + +W + S
Sbjct: 57  KEIDGLCSAFLWSGPELNRKKAKVSWNDVCMPKEEGGLGLRSLTEANKVCCLKLIWRLLS 116

Query: 374 NKSSIWVDWIKN-MIKW*HFWTMPITNN-ASWMWRKILQLRETIQDLIVHRIGNGADTFI 547
           + SS+WV W++  +I+   FW++  T+   SWMWRK+L+ R        + I NG     
Sbjct: 117 S-SSLWVQWLRQYVIRKGSFWSLRDTSTLGSWMWRKLLKYRHLASGFTQYEIRNGKGVSF 175

Query: 548 *QDPWT 565
             D W+
Sbjct: 176 WHDNWS 181



 Score = 40.8 bits (94), Expect(2) = 3e-19
 Identities = 19/46 (41%), Positives = 26/46 (56%)
 Frame = +3

Query: 60  KITSKIKTWKARFLLLAGRMELIK*VISSMQVYWSSVLMLPKKVLK 197
           +I  +I  W AR L  AGR++LI  VI S+  +W S   LP   +K
Sbjct: 12  RIRERISCWTARHLSFAGRLQLISSVIHSLTNFWMSAFRLPNACIK 57


>emb|CAB72467.1| putative protein [Arabidopsis thaliana]
          Length = 762

 Score = 85.5 bits (210), Expect(2) = 5e-19
 Identities = 41/126 (32%), Positives = 69/126 (54%), Gaps = 2/126 (1%)
 Frame = +2

Query: 194 KRVESTSARFLWTGPSMSNKMHCISWKRIARDRKDGGLGFHELELQNKAGIARQVWDINS 373
           + +E   + FLW+G ++++K   ISW ++ + + +GGLG   L+  N     + VW I S
Sbjct: 390 QEIEKLCSSFLWSGTNLNSKKAKISWNQVCKPKSEGGLGLRSLKEANDVCCLKLVWRIIS 449

Query: 374 NKSSIWVDWIK-NMIKW*HFWTMPITNN-ASWMWRKILQLRETIQDLIVHRIGNGADTFI 547
           +  S+WV W++ N++K   FW +    N  SW+W+KIL+ R   +      +GNG  T  
Sbjct: 450 HGDSLWVKWVEHNLLKREIFWIVKENANLGSWIWKKILKYRGVAKRFCKAEVGNGESTSF 509

Query: 548 *QDPWT 565
             D W+
Sbjct: 510 WFDDWS 515



 Score = 37.7 bits (86), Expect(2) = 5e-19
 Identities = 18/51 (35%), Positives = 28/51 (54%)
 Frame = +3

Query: 60  KITSKIKTWKARFLLLAGRMELIK*VISSMQVYWSSVLMLPKKVLKGLRVL 212
           +I  +I +W +RFL  AGR  LI  +I S   +W S   LP+  ++ +  L
Sbjct: 345 QIRKRIGSWSSRFLSFAGRFNLISSIIWSSCNFWLSAFQLPRACIQEIEKL 395


>gb|ABK28140.1| unknown [Arabidopsis thaliana]
          Length = 349

 Score = 78.6 bits (192), Expect(2) = 5e-19
 Identities = 37/127 (29%), Positives = 68/127 (53%), Gaps = 2/127 (1%)
 Frame = +2

Query: 194 KRVESTSARFLWTGPSMSNKMHCISWKRIARDRKDGGLGFHELELQNKAGIARQVWDINS 373
           K +E   + FLW+GP +      I+W ++     +GGLG   L+  N     + +W + +
Sbjct: 61  KEIERLCSAFLWSGPDLKTHNAKIAWSKVCLPMCEGGLGLRPLKEINTVCGLKLIWRLLA 120

Query: 374 NKSSIWVDWIKN-MIKW*HFWTMPITN-NASWMWRKILQLRETIQDLIVHRIGNGADTFI 547
           +++S+W  W++  +I+  +FW +  ++   SWMWRK+L LR+  +      I NG +T  
Sbjct: 121 SQTSLWGQWVQTYLIRRNNFWAIKASSYQGSWMWRKLLTLRDVARSFHKKEIHNGRNTSF 180

Query: 548 *QDPWTA 568
             D W++
Sbjct: 181 WYDHWSS 187



 Score = 44.7 bits (104), Expect(2) = 5e-19
 Identities = 21/51 (41%), Positives = 30/51 (58%)
 Frame = +3

Query: 60  KITSKIKTWKARFLLLAGRMELIK*VISSMQVYWSSVLMLPKKVLKGLRVL 212
           KI  +I +W  RFL   GR++LIK V+ S+  +WSS   LP   +K +  L
Sbjct: 16  KIRKRISSWTGRFLSYCGRLQLIKSVLMSITNFWSSAFRLPGNCMKEIERL 66


>gb|ABE65398.1| hypothetical protein At1g43570 [Arabidopsis thaliana]
          Length = 348

 Score = 78.6 bits (192), Expect(2) = 5e-19
 Identities = 37/127 (29%), Positives = 68/127 (53%), Gaps = 2/127 (1%)
 Frame = +2

Query: 194 KRVESTSARFLWTGPSMSNKMHCISWKRIARDRKDGGLGFHELELQNKAGIARQVWDINS 373
           K +E   + FLW+GP +      I+W ++     +GGLG   L+  N     + +W + +
Sbjct: 61  KEIERLCSAFLWSGPDLKTHNAKIAWSKVCLPMCEGGLGLRPLKEINTVCGLKLIWRLLA 120

Query: 374 NKSSIWVDWIKN-MIKW*HFWTMPITN-NASWMWRKILQLRETIQDLIVHRIGNGADTFI 547
           +++S+W  W++  +I+  +FW +  ++   SWMWRK+L LR+  +      I NG +T  
Sbjct: 121 SQTSLWGQWVQTYLIRRNNFWAIKASSYQGSWMWRKLLTLRDVARSFHKKEIHNGRNTSF 180

Query: 548 *QDPWTA 568
             D W++
Sbjct: 181 WYDHWSS 187



 Score = 44.7 bits (104), Expect(2) = 5e-19
 Identities = 21/51 (41%), Positives = 30/51 (58%)
 Frame = +3

Query: 60  KITSKIKTWKARFLLLAGRMELIK*VISSMQVYWSSVLMLPKKVLKGLRVL 212
           KI  +I +W  RFL   GR++LIK V+ S+  +WSS   LP   +K +  L
Sbjct: 16  KIRKRISSWTGRFLSYCGRLQLIKSVLMSITNFWSSAFRLPGNCMKEIERL 66