BLASTX nr result
ID: Akebia22_contig00023964
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Akebia22_contig00023964
(1692 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta... 88 6e-30
emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|72678... 84 5e-29
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana] 88 1e-28
ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298... 89 1e-27
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,... 86 1e-24
gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thal... 97 4e-23
dbj|BAB01344.1| reverse transcriptase-like protein [Arabidopsis ... 93 5e-22
ref|XP_004173049.1| PREDICTED: putative ribonuclease H protein A... 55 6e-22
dbj|BAB08692.1| non-LTR retroelement reverse transcriptase-like ... 83 7e-22
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta... 82 4e-21
emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thal... 90 7e-21
gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana] 83 7e-20
dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana] 86 7e-20
gb|AAD15471.1| putative non-LTR retroelement reverse transcripta... 83 1e-19
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ... 86 2e-19
dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like ... 85 2e-19
gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata sub... 83 3e-19
emb|CAB72467.1| putative protein [Arabidopsis thaliana] 86 5e-19
gb|ABK28140.1| unknown [Arabidopsis thaliana] 79 5e-19
gb|ABE65398.1| hypothetical protein At1g43570 [Arabidopsis thali... 79 5e-19
>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1216
Score = 87.8 bits (216), Expect(3) = 6e-30
Identities = 45/158 (28%), Positives = 80/158 (50%), Gaps = 2/158 (1%)
Frame = +2
Query: 182 QESAKRVESTSARFLWTGPSMSNKMHCISWKRIARDRKDGGLGFHELELQNKAGIARQVW 361
+E + S+ LW+GP ++ K +SW I + +K+GGLG L NK + +W
Sbjct: 554 RECINEINRISSALLWSGPELNPKKAKVSWDEICKPKKEGGLGLQSLREANKVSSLKLIW 613
Query: 362 DINSNKSSIWVDWIK-NMIKW*HFWTMPITNN-ASWMWRKILQLRETIQDLIVHRIGNGA 535
+ S + S+WV W + N++K FW++ + SW+WR++L+ RE + + NG
Sbjct: 614 RLLSCQDSLWVKWTRMNLLKKESFWSIGTHSTLGSWIWRRLLKHREVAKSFCKIEVNNGV 673
Query: 536 DTFI*QDPWTAREGGWILNNNQQADSCDSRLHREAKIS 649
+T D W+ E G ++N + D + R ++
Sbjct: 674 NTSFWFDNWS--EKGPLINLTGARGAIDMGISRHMTLA 709
Score = 57.0 bits (136), Expect(3) = 6e-30
Identities = 38/147 (25%), Positives = 63/147 (42%), Gaps = 6/147 (4%)
Frame = +3
Query: 753 KDRVIWTLDP---KGLFTMKSAYKSIQVPFPQVR*HSLVWFPNNIKFHIATSWLCLSKGL 923
+D ++W K F+ K + I+ Q H VWF + +WL + L
Sbjct: 744 EDAILWRGKEDVFKARFSTKDTWNHIRTSSNQRAWHKGVWFAHATPKFSFCAWLAIRNRL 803
Query: 924 KTQDKLKDKGIIQVSSC-FCRNSMEFEDHLFLGCKFSSNLWQKILRRSQIIHSNKEWREE 1100
T D++ ++C FC + ME DHLF C +SS +W I + + +W
Sbjct: 804 STGDRMMTWNNGTPTTCVFCSSPMETRDHLFFQCCYSSEIWTSIAKNVYKDRFSTKWSAV 863
Query: 1101 VEWVSNNFRD--DDFLGKKACLQRLHS 1175
V ++S++ D FL + +HS
Sbjct: 864 VNYISDSQPDRIQSFLSRYTFQVSIHS 890
Score = 35.4 bits (80), Expect(3) = 6e-30
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +3
Query: 60 KITSKIKTWKARFLLLAGRMELIK*VISSMQVYWSSVLMLPKKVL 194
+I +I W +R+L AGR+ LI V+ S+ +W + LP++ +
Sbjct: 513 QIRRRIGMWTSRYLSFAGRLSLINSVLWSITNFWMNAFRLPRECI 557
>emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|7267871|emb|CAB78214.1|
putative protein [Arabidopsis thaliana]
Length = 473
Score = 83.6 bits (205), Expect(3) = 5e-29
Identities = 43/157 (27%), Positives = 84/157 (53%), Gaps = 2/157 (1%)
Frame = +2
Query: 182 QESAKRVESTSARFLWTGPSMSNKMHCISWKRIARDRKDGGLGFHELELQNKAGIARQVW 361
++ + ++ + +LW+G ++ I+W + + +++GGLG L+ N + +W
Sbjct: 82 RDCIREIDKMCSAYLWSGGELNTSKAKITWAFVCKPKEEGGLGLRSLKEANDVCCLKLIW 141
Query: 362 DINSNKSSIWVDWIK-NMIKW*HFWTM-PITNNASWMWRKILQLRETIQDLIVHRIGNGA 535
I S+ S+WV WI+ +++K FW + T+ SWMWRKIL+ R+ + L I NGA
Sbjct: 142 RIISHADSLWVKWIQSSLLKKVSFWAVRENTSLGSWMWRKILKFRDIARTLCKVEINNGA 201
Query: 536 DTFI*QDPWTAREGGWILNNNQQADSCDSRLHREAKI 646
T D W+ + G ++++ + D +++ A +
Sbjct: 202 RTSFWYDDWS--DLGRLIDSAGDRGAIDLGINKHATV 236
Score = 56.6 bits (135), Expect(3) = 5e-29
Identities = 32/130 (24%), Positives = 59/130 (45%), Gaps = 4/130 (3%)
Frame = +3
Query: 753 KDRVIWTLDP---KGLFTMKSAYKSIQVPFPQVR*HSLVWFPNNIKFHIATSWLCLSKGL 923
+DR +W + +F+ K + I+ +V + VWF I H WL + L
Sbjct: 271 EDRALWKGKENRFRSIFSTKDTWNHIRTVSNKVAWYKGVWFAQAIPKHAFCMWLAVHNRL 330
Query: 924 KTQDKLKDKGIIQVSSCF-CRNSMEFEDHLFLGCKFSSNLWQKILRRSQIIHSNKEWREE 1100
T D++ + ++C C ++E DHLF C F++ +W+ + + +W+
Sbjct: 331 STGDRMTLWNMGVDATCILCNKALESRDHLFFSCPFATEIWEPLAKTIYNTCFYTDWQTI 390
Query: 1101 VEWVSNNFRD 1130
+ VS N+ D
Sbjct: 391 INNVSRNWPD 400
Score = 37.0 bits (84), Expect(3) = 5e-29
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +3
Query: 72 KIKTWKARFLLLAGRMELIK*VISSMQVYWSSVLMLPKKVLK 197
KI +W ARFL AGR+ LI V+ S+ +W LP+ ++
Sbjct: 45 KICSWSARFLSYAGRLNLISSVLWSICNFWMGAFRLPRDCIR 86
>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
Length = 872
Score = 88.2 bits (217), Expect(3) = 1e-28
Identities = 45/158 (28%), Positives = 82/158 (51%), Gaps = 2/158 (1%)
Frame = +2
Query: 182 QESAKRVESTSARFLWTGPSMSNKMHCISWKRIARDRKDGGLGFHELELQNKAGIARQVW 361
++ + ++ + FLW+G MS+ ISW + + + +GGLG L+ N + VW
Sbjct: 480 RQCIREIDKLCSSFLWSGSEMSSHKAKISWDIVCKPKAEGGLGLRNLKEANDVSCLKLVW 539
Query: 362 DINSNKSSIWVDWI-KNMIKW*HFWTM-PITNNASWMWRKILQLRETIQDLIVHRIGNGA 535
I SN +S+W W+ + +I+ W++ T+ SW+WRKIL++R+ + +GNG
Sbjct: 540 RIISNSNSLWTKWVAEYLIRKKSIWSLKQSTSMGSWIWRKILKIRDVAKSFSRVEVGNGE 599
Query: 536 DTFI*QDPWTAREGGWILNNNQQADSCDSRLHREAKIS 649
D W+A G +++ + D + REA ++
Sbjct: 600 SASFWYDHWSAH--GRLIDTVGDKGTIDLGIPREASVA 635
Score = 49.7 bits (117), Expect(3) = 1e-28
Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 6/132 (4%)
Frame = +3
Query: 753 KDRVIWTLDP---KGLFTMKSAYKSIQVPFPQVR*HSLVWFPNNIKFHIATSWLCLSKGL 923
+D V+W K F+ + + I+ V H VWF + + +WL + L
Sbjct: 669 EDTVLWRGKNDVFKPHFSTRDTWHLIKATSSTVSWHKGVWFRHATPKYALCTWLAIHNRL 728
Query: 924 KTQDKL---KDKGIIQVSSCFCRNSMEFEDHLFLGCKFSSNLWQKILRRSQIIHSNKEWR 1094
T D++ G + + C N+ + +HLF C ++S +W + + + W
Sbjct: 729 PTGDRMLKWNSSGSVSGNCVLCTNNSKTLEHLFFSCSYASTVWAALAKGIWKTRYSTRWS 788
Query: 1095 EEVEWVSNNFRD 1130
+ +S +F+D
Sbjct: 789 HLLTHISTHFQD 800
Score = 37.7 bits (86), Expect(3) = 1e-28
Identities = 17/46 (36%), Positives = 27/46 (58%)
Frame = +3
Query: 60 KITSKIKTWKARFLLLAGRMELIK*VISSMQVYWSSVLMLPKKVLK 197
+I +I TW RF AGR LIK V+ S+ +W + LP++ ++
Sbjct: 439 QIKKRIATWTFRFFSFAGRFNLIKSVLWSICNFWLAAFRLPRQCIR 484
>ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298394 [Fragaria vesca
subsp. vesca]
Length = 958
Score = 88.6 bits (218), Expect(3) = 1e-27
Identities = 42/124 (33%), Positives = 65/124 (52%), Gaps = 1/124 (0%)
Frame = +2
Query: 194 KRVESTSARFLWTGPSMSNKMHCISWKRIARDRKDGGLGFHELELQNKAGIARQVWDINS 373
K +E FLW G ++W I + +GGLG +L NKA + +W++ S
Sbjct: 659 KDIEKRLRCFLWAGNCSGRAATKVAWSEICLPKCEGGLGIKDLHCWNKALMISHIWNLVS 718
Query: 374 NKSSIWVDWIK-NMIKW*HFWTMPITNNASWMWRKILQLRETIQDLIVHRIGNGADTFI* 550
+ S+ W DW+K ++K FW P+ + SW WRK+L++RE V+ IG+G T +
Sbjct: 719 SSSNFWTDWVKVYLLKGNSFWNAPLPSICSWNWRKLLKIRELCCSFFVNIIGDGRATSLW 778
Query: 551 QDPW 562
D W
Sbjct: 779 FDNW 782
Score = 58.2 bits (139), Expect(3) = 1e-27
Identities = 26/48 (54%), Positives = 40/48 (83%)
Frame = +3
Query: 60 KITSKIKTWKARFLLLAGRMELIK*VISSMQVYWSSVLMLPKKVLKGL 203
+I ++IK+W+ + L AGR++LI+ V+SS+QVYW+S L+LPKKVLK +
Sbjct: 614 RIETRIKSWENKVLSFAGRLQLIQSVLSSIQVYWASHLILPKKVLKDI 661
Score = 25.4 bits (54), Expect(3) = 1e-27
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 4 GCPPISSRLRLVDRQPLIPR*RVKLK 81
G P I+S+LR+ D PL+ R ++K
Sbjct: 595 GIPLITSKLRMQDCSPLLDRIETRIK 620
>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
[Arabidopsis thaliana]
Length = 1164
Score = 85.9 bits (211), Expect(3) = 1e-24
Identities = 50/163 (30%), Positives = 78/163 (47%), Gaps = 2/163 (1%)
Frame = +2
Query: 194 KRVESTSARFLWTGPSMSNKMHCISWKRIARDRKDGGLGFHELELQNKAGIARQVWDINS 373
K++ES +RFLW+ + ++W ++ + +GG+G + N+ R +W + S
Sbjct: 727 KKIESLCSRFLWSSRIDKKGIAKVAWSQVCLPKAEGGIGLRRFAVSNRTLYLRMIWLLFS 786
Query: 374 NKSSIWVDWIK--NMIKW*HFWTMPITNNASWMWRKILQLRETIQDLIVHRIGNGADTFI 547
N S+WV W K ++ K FW P + SW W+ +L+LR + I +GNG D
Sbjct: 787 NSGSLWVAWHKQHSLGKSTSFWNQPEKPHDSWNWKCLLRLRVVAERFIRCNVGNGRDASF 846
Query: 548 *QDPWTAREGGWILNNNQQADSCDSRLHREAKISSLSNDTCLS 676
D WT G ++ D R+H AKIS D C S
Sbjct: 847 WFDNWT--PFGPLIKFLGNEGPRDLRVHLNAKIS----DVCTS 883
Score = 39.7 bits (91), Expect(3) = 1e-24
Identities = 19/51 (37%), Positives = 30/51 (58%)
Frame = +3
Query: 60 KITSKIKTWKARFLLLAGRMELIK*VISSMQVYWSSVLMLPKKVLKGLRVL 212
KIT++ +W R L AGR++L+ VIS + +W S +LP +K + L
Sbjct: 682 KITARFNSWVVRLLSFAGRVQLLASVISGIVNFWISSFILPLGCIKKIESL 732
Score = 36.6 bits (83), Expect(3) = 1e-24
Identities = 30/106 (28%), Positives = 40/106 (37%), Gaps = 6/106 (5%)
Frame = +3
Query: 741 DCSEKDRVIWTLDPK-----GLFTMKSAYKSIQVPFPQVR*HSLVWFPNNIKFHIATSWL 905
D + D W +D K SA + P P R VWF H W
Sbjct: 911 DAQDLDSYDWVVDNKVCQGFSAAATWSALRPSSAPVPWAR---AVWFKGATPKHAFHLWT 967
Query: 906 CLSKGLKTQDKLKDKGIIQVSSC-FCRNSMEFEDHLFLGCKFSSNL 1040
L T+ +L G+ ++C C E DHLFL C F++ L
Sbjct: 968 AHLDRLPTKVRLASWGMQIDTTCGLCSLHPETRDHLFLSCDFANFL 1013
>gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thaliana]
Length = 629
Score = 96.7 bits (239), Expect(2) = 4e-23
Identities = 48/154 (31%), Positives = 81/154 (52%), Gaps = 2/154 (1%)
Frame = +2
Query: 194 KRVESTSARFLWTGPSMSNKMHCISWKRIARDRKDGGLGFHELELQNKAGIARQVWDINS 373
K + S + FLW+GP + + +SW I + +++GGLG L N + + +W + S
Sbjct: 242 KEINSICSAFLWSGPELHRRKAKVSWDDICKPKQEGGLGLRSLTEANVVSVLKLIWRVTS 301
Query: 374 NKSSIWVDWIK-NMIKW*HFWTM-PITNNASWMWRKILQLRETIQDLIVHRIGNGADTFI 547
N S+WV W K N++K FW++ P ++ SWMW+K+L+ RET + + NGA T
Sbjct: 302 NDDSLWVKWSKMNLLKQESFWSLTPNSSLGSWMWKKMLKYRETAKPFSRVEVNNGARTSF 361
Query: 548 *QDPWTAREGGWILNNNQQADSCDSRLHREAKIS 649
D W+ G +++ Q D + R ++
Sbjct: 362 WFDNWSGM--GHLMDVTGQRGQIDLGISRNKTVA 393
Score = 40.4 bits (93), Expect(2) = 4e-23
Identities = 19/46 (41%), Positives = 27/46 (58%)
Frame = +3
Query: 60 KITSKIKTWKARFLLLAGRMELIK*VISSMQVYWSSVLMLPKKVLK 197
+I ++I TW +R+L AGR+ LI V+ S +W S LP LK
Sbjct: 197 QIRNRIGTWTSRYLSFAGRLNLISSVLWSTMNFWMSAFRLPSACLK 242
>dbj|BAB01344.1| reverse transcriptase-like protein [Arabidopsis thaliana]
Length = 1115
Score = 92.8 bits (229), Expect(2) = 5e-22
Identities = 49/154 (31%), Positives = 80/154 (51%), Gaps = 2/154 (1%)
Frame = +2
Query: 194 KRVESTSARFLWTGPSMSNKMHCISWKRIARDRKDGGLGFHELELQNKAGIARQVWDINS 373
K + S + FLW+GP ++ + +SW I + K GGLG L N + + +W + S
Sbjct: 754 KEINSICSAFLWSGPELNRRKAKVSWDDICKP-KQGGLGLRSLTEANVVSVLKLIWRVTS 812
Query: 374 NKSSIWVDWIK-NMIKW*HFWTM-PITNNASWMWRKILQLRETIQDLIVHRIGNGADTFI 547
N S+WV W K N++K FW++ P ++ SWMW+K+L+ RET + + NGA T
Sbjct: 813 NDDSLWVKWSKMNLLKQESFWSLKPNSSLGSWMWKKMLKYRETAKPFSRVEVNNGARTSF 872
Query: 548 *QDPWTAREGGWILNNNQQADSCDSRLHREAKIS 649
D W+ G +++ Q D + R ++
Sbjct: 873 WFDNWSGM--GHLMDVTGQRGQIDLGISRNKTVA 904
Score = 40.4 bits (93), Expect(2) = 5e-22
Identities = 19/46 (41%), Positives = 27/46 (58%)
Frame = +3
Query: 60 KITSKIKTWKARFLLLAGRMELIK*VISSMQVYWSSVLMLPKKVLK 197
+I ++I TW +R+L AGR+ LI V+ S +W S LP LK
Sbjct: 709 QIRNRIGTWTSRYLSFAGRLNLISSVLWSTMNFWMSAFRLPSACLK 754
>ref|XP_004173049.1| PREDICTED: putative ribonuclease H protein At1g65750-like, partial
[Cucumis sativus]
Length = 647
Score = 55.1 bits (131), Expect(4) = 6e-22
Identities = 35/152 (23%), Positives = 67/152 (44%), Gaps = 1/152 (0%)
Frame = +2
Query: 194 KRVESTSARFLWTGPSMSNKMHCISWKRIARDRKDGGLGFHELELQNKAGIARQVWDINS 373
K V+ +LW G ++W + +GGL + NKA + +W +
Sbjct: 289 KDVDKILRSYLWRGKEEGRGGAKVAWDEVCLPFDEGGLAICDGSSWNKASTLKILWLLLV 348
Query: 374 NKSSIWVDWIK-NMIKW*HFWTMPITNNASWMWRKILQLRETIQDLIVHRIGNGADTFI* 550
S+WV W++ ++K W + SW +R IL+ R+ ++ + ++GN +
Sbjct: 349 KSGSLWVAWVEAYILKGRSLWEIDAGAGRSWCFRAILRKRDILKAHVEMKLGNVRKCRML 408
Query: 551 QDPWTAREGGWILNNNQQADSCDSRLHREAKI 646
D W +GG I+ + D+ R+A++
Sbjct: 409 LDAWI--QGGMIIQLFGERVIYDAGSRRDARL 438
Score = 53.9 bits (128), Expect(4) = 6e-22
Identities = 24/45 (53%), Positives = 34/45 (75%)
Frame = +3
Query: 63 ITSKIKTWKARFLLLAGRMELIK*VISSMQVYWSSVLMLPKKVLK 197
ITS+I++W AR L A ++L++ V+ S+QVYW+SV MLP KV K
Sbjct: 245 ITSRIRSWSARVLSFASSLQLVRLVLRSLQVYWASVFMLPMKVHK 289
Score = 42.7 bits (99), Expect(4) = 6e-22
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 4/107 (3%)
Frame = +3
Query: 711 LWQQISALDFDCSEKDRVIWTLDPKGLFTMKSAYKSIQVPFPQVR*HSLVWFPNNIKFH- 887
+W I + S DR +W F++ SA+++I+ +V L+W NI
Sbjct: 460 IWDMIQGVRLSPSVDDRWVWVSGRLDSFSIVSAWETIRPNSSRVGWSGLLWGGGNITVGR 519
Query: 888 -IATSWLCLSKGLKTQDKLK--DKGIIQVSSCFCRNSMEFEDHLFLG 1019
+WL + L T+D+L D+ I +S C + E DHL +G
Sbjct: 520 VYFCAWLAIRDRLGTRDRLSWWDR-FIPLSCMLCGGNYESRDHLLIG 565
Score = 20.8 bits (42), Expect(4) = 6e-22
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +1
Query: 4 GCPPISSRLRLVDRQPLI 57
G P +S RLR D PLI
Sbjct: 225 GLPLLSRRLRSSDCDPLI 242
>dbj|BAB08692.1| non-LTR retroelement reverse transcriptase-like protein
[Arabidopsis thaliana] gi|93007380|gb|ABE97193.1|
hypothetical protein At5g13655 [Arabidopsis thaliana]
Length = 385
Score = 82.8 bits (203), Expect(2) = 7e-22
Identities = 41/146 (28%), Positives = 80/146 (54%), Gaps = 2/146 (1%)
Frame = +2
Query: 221 FLWTGPSMSNKMHCISWKRIARDRKDGGLGFHELELQNKAGIARQVWDINSNKSSIWVDW 400
FLW+GPS++ + ++W + + +GGLG +E NK + + +W I S K S+WVDW
Sbjct: 5 FLWSGPSLNARKTKVAWSVVCTPKSEGGLGLRAVEETNKVCMLKLIWRILSAKGSLWVDW 64
Query: 401 I-KNMIKW*HFWTMPITNN-ASWMWRKILQLRETIQDLIVHRIGNGADTFI*QDPWTARE 574
+ K++++ W + T++ SW+W+K+L+ R+ + + NG T D W++
Sbjct: 65 VKKHLLRGGSLWAVKETSSRGSWIWKKLLKYRDKAKCFHKVDVRNGESTSFWYDSWSSL- 123
Query: 575 GGWILNNNQQADSCDSRLHREAKISS 652
G + + + D + +++ +SS
Sbjct: 124 -GCLYDKFGERGCIDMGIPKDSTLSS 148
Score = 50.1 bits (118), Expect(2) = 7e-22
Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 4/121 (3%)
Frame = +3
Query: 747 SEKDRVIWTLDPKGL---FTMKSAYKSIQVPFPQVR*HSLVWFPNNIKFHIATSWLCLSK 917
+E+D +W G F K + I+ P+++ + +WF N + +WL +
Sbjct: 180 TERDVALWKGKEDGFHPTFLSKETWSQIRNTQPEMQGYRGIWFSNATPKYALLTWLMVRN 239
Query: 918 GLKTQDKLKDKGIIQVSSC-FCRNSMEFEDHLFLGCKFSSNLWQKILRRSQIIHSNKEWR 1094
+ T +K+ +SC FC+N E +HLF C ++ +W +++ + + W+
Sbjct: 240 RIATGEKMGLWNQNTDTSCIFCKNPNETREHLFFQCVYTRKVWNGLIKGLLLDKYSDRWQ 299
Query: 1095 E 1097
+
Sbjct: 300 D 300
>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1352
Score = 82.0 bits (201), Expect(2) = 4e-21
Identities = 39/125 (31%), Positives = 70/125 (56%), Gaps = 2/125 (1%)
Frame = +2
Query: 194 KRVESTSARFLWTGPSMSNKMHCISWKRIARDRKDGGLGFHELELQNKAGIARQVWDINS 373
+ +E + FLW+GP ++ K I+W + + +++GGLG L+ N+ + + +W I S
Sbjct: 984 QEIEKMFSAFLWSGPDLNTKKAKIAWSEVCKLKEEGGLGLKPLKEANEVSLLKLIWRILS 1043
Query: 374 NKSSIWVDWI-KNMIKW*HFWTM-PITNNASWMWRKILQLRETIQDLIVHRIGNGADTFI 547
+ S+WV W+ K++I+ FW++ T SW+WRKIL+ R+ + + +G T
Sbjct: 1044 ARDSLWVKWVNKHLIRKETFWSVKENTGLGSWLWRKILKQRDKARLFHRMEVRSGTFTSF 1103
Query: 548 *QDPW 562
D W
Sbjct: 1104 WHDHW 1108
Score = 48.1 bits (113), Expect(2) = 4e-21
Identities = 23/46 (50%), Positives = 32/46 (69%)
Frame = +3
Query: 60 KITSKIKTWKARFLLLAGRMELIK*VISSMQVYWSSVLMLPKKVLK 197
KI ++I +W RFL AGR++LIK V+SS+ +W SV LPK L+
Sbjct: 939 KIRARITSWTNRFLSFAGRLQLIKSVLSSITNFWLSVFRLPKACLQ 984
>emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|7267919|emb|CAB78261.1| putative reverse
transcriptase [Arabidopsis thaliana]
Length = 662
Score = 89.7 bits (221), Expect(2) = 7e-21
Identities = 39/131 (29%), Positives = 70/131 (53%), Gaps = 1/131 (0%)
Frame = +2
Query: 182 QESAKRVESTSARFLWTGPSMSNKMHCISWKRIARDRKDGGLGFHELELQNKAGIARQVW 361
+E + ++ + FLW+GP +S I+W+ + R +++GGLG ++ N + +W
Sbjct: 351 RECVREIDKLCSAFLWSGPELSTNKAKIAWETVCRPKREGGLGLQSIKEANDVCCLKLIW 410
Query: 362 DINSNKSSIWVDWIKN-MIKW*HFWTMPITNNASWMWRKILQLRETIQDLIVHRIGNGAD 538
I S S+WV WI+ ++K FW+ + SWMW+K+L+ R+T + I NG
Sbjct: 411 RIVSQGDSLWVQWIRTYLLKRNTFWSFRSASQGSWMWKKLLKYRDTAKAFSKVDIRNGET 470
Query: 539 TFI*QDPWTAR 571
D W+++
Sbjct: 471 ASFWYDDWSSK 481
Score = 39.7 bits (91), Expect(2) = 7e-21
Identities = 18/46 (39%), Positives = 29/46 (63%)
Frame = +3
Query: 60 KITSKIKTWKARFLLLAGRMELIK*VISSMQVYWSSVLMLPKKVLK 197
+I +I TW ARFL AGR+ L+ V+ S+ +W S LP++ ++
Sbjct: 310 QIKRRIGTWTARFLSYAGRLNLVSSVLWSICNFWLSAFRLPRECVR 355
>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
Length = 740
Score = 83.2 bits (204), Expect(2) = 7e-20
Identities = 39/126 (30%), Positives = 71/126 (56%), Gaps = 2/126 (1%)
Frame = +2
Query: 194 KRVESTSARFLWTGPSMSNKMHCISWKRIARDRKDGGLGFHELELQNKAGIARQVWDINS 373
K +E + FLW+GP ++ K I+W + + +++GGLG L NK + +W + S
Sbjct: 410 KEIEKLCSAFLWSGPELNPKKAKITWTSLCKLKQEGGLGIKSLLEANKVSCLKLIWRLVS 469
Query: 374 NKSSIWVDWI-KNMIKW*HFWTMPITNN-ASWMWRKILQLRETIQDLIVHRIGNGADTFI 547
+SS+WV+W+ +I+ FW+ ++ SWMW+K+L+ R+ + + I +G+ T
Sbjct: 470 RQSSLWVNWVWTYIIRKGSFWSANDRSSLGSWMWKKLLKYRDVAKSMCKVEIKSGSSTSF 529
Query: 548 *QDPWT 565
D W+
Sbjct: 530 WYDNWS 535
Score = 42.7 bits (99), Expect(2) = 7e-20
Identities = 22/51 (43%), Positives = 29/51 (56%)
Frame = +3
Query: 60 KITSKIKTWKARFLLLAGRMELIK*VISSMQVYWSSVLMLPKKVLKGLRVL 212
K+ SKI +W AR L AGR+ LI VI S+ +W S LP +K + L
Sbjct: 365 KVRSKISSWTARSLSYAGRLALINSVIVSLSNFWMSAYRLPAGCIKEIEKL 415
>dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana]
Length = 478
Score = 85.5 bits (210), Expect(2) = 7e-20
Identities = 40/126 (31%), Positives = 72/126 (57%), Gaps = 2/126 (1%)
Frame = +2
Query: 194 KRVESTSARFLWTGPSMSNKMHCISWKRIARDRKDGGLGFHELELQNKAGIARQVWDINS 373
K ++S + FLW+GP ++ K ++W + + +GGLG L+ NK + + +W + S
Sbjct: 93 KEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLKLIWRMLS 152
Query: 374 NKSSIWVDWIK-NMIKW*HFWTMP-ITNNASWMWRKILQLRETIQDLIVHRIGNGADTFI 547
+ +S+WV W++ +++ FW++ T SWMW+KIL+ R + H I NG++T
Sbjct: 153 S-TSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHRALASGFVKHDIHNGSNTSF 211
Query: 548 *QDPWT 565
D W+
Sbjct: 212 WFDNWS 217
Score = 40.4 bits (93), Expect(2) = 7e-20
Identities = 20/46 (43%), Positives = 26/46 (56%)
Frame = +3
Query: 60 KITSKIKTWKARFLLLAGRMELIK*VISSMQVYWSSVLMLPKKVLK 197
KI +I W AR L AGR++LI VI S+ +W S LP +K
Sbjct: 48 KIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAFRLPSACIK 93
>gb|AAD15471.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1277
Score = 82.8 bits (203), Expect(2) = 1e-19
Identities = 39/126 (30%), Positives = 70/126 (55%), Gaps = 2/126 (1%)
Frame = +2
Query: 194 KRVESTSARFLWTGPSMSNKMHCISWKRIARDRKDGGLGFHELELQNKAGIARQVWDINS 373
K +E + FLW+GP ++ K I+W + + +++GGLG L NK + +W + S
Sbjct: 979 KEIEKLCSAFLWSGPELNPKKAKITWTSLCKLKQEGGLGIKSLLEANKVSCLKLIWRLVS 1038
Query: 374 NKSSIWVDWI-KNMIKW*HFWTMPITNN-ASWMWRKILQLRETIQDLIVHRIGNGADTFI 547
+SS+WV+W+ +I+ FW+ ++ SWMW+K+L R+ + + I +G+ T
Sbjct: 1039 RQSSLWVNWVWTYIIRKGSFWSANDRSSLGSWMWKKLLNYRDVAKSMCKVEIKSGSSTSF 1098
Query: 548 *QDPWT 565
D W+
Sbjct: 1099 WYDNWS 1104
Score = 42.7 bits (99), Expect(2) = 1e-19
Identities = 22/51 (43%), Positives = 29/51 (56%)
Frame = +3
Query: 60 KITSKIKTWKARFLLLAGRMELIK*VISSMQVYWSSVLMLPKKVLKGLRVL 212
K+ SKI +W AR L AGR+ LI VI S+ +W S LP +K + L
Sbjct: 934 KVRSKISSWTARSLSYAGRLALINSVIVSLSNFWMSAYRLPAGCIKEIEKL 984
>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 1223
Score = 85.5 bits (210), Expect(2) = 2e-19
Identities = 40/126 (31%), Positives = 70/126 (55%), Gaps = 2/126 (1%)
Frame = +2
Query: 194 KRVESTSARFLWTGPSMSNKMHCISWKRIARDRKDGGLGFHELELQNKAGIARQVWDINS 373
+ +E + FLW+G M++ ISW + + + +GGLG L+ N + VW I S
Sbjct: 837 RELEKMCSAFLWSGTEMNSNKAKISWHMVCKPKDEGGLGLRSLKEANDVCCLKLVWKIVS 896
Query: 374 NKSSIWVDWI-KNMIKW*HFWTMPIT-NNASWMWRKILQLRETIQDLIVHRIGNGADTFI 547
+ +S+WV W+ +++++ FW + T + SW+W+K+L+ RE + L +GNG T
Sbjct: 897 HSNSLWVKWVDQHLLRNASFWEVKQTVSQGSWIWKKLLKYREVAKTLSKVEVGNGKQTSF 956
Query: 548 *QDPWT 565
D W+
Sbjct: 957 WYDNWS 962
Score = 38.9 bits (89), Expect(2) = 2e-19
Identities = 17/48 (35%), Positives = 30/48 (62%)
Frame = +3
Query: 60 KITSKIKTWKARFLLLAGRMELIK*VISSMQVYWSSVLMLPKKVLKGL 203
++ +I +W +RFL AGR+ LI V+ S+ +W + LP+K ++ L
Sbjct: 792 QVRKRIGSWTSRFLSYAGRLNLISSVLWSICNFWLAAFRLPRKCIREL 839
>dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 489
Score = 85.1 bits (209), Expect(2) = 2e-19
Identities = 39/130 (30%), Positives = 68/130 (52%), Gaps = 2/130 (1%)
Frame = +2
Query: 182 QESAKRVESTSARFLWTGPSMSNKMHCISWKRIARDRKDGGLGFHELELQNKAGIARQVW 361
+E + ++ + +LW+G ++ I+W + + + +GGLG L+ N + +W
Sbjct: 215 RECIREIDKMCSAYLWSGGDLNTSKAKIAWTDVCKPKDEGGLGLRSLKEANDVSCLKLIW 274
Query: 362 DINSNKSSIWVDWI-KNMIKW*HFWTM-PITNNASWMWRKILQLRETIQDLIVHRIGNGA 535
I S+ S+WV WI ++K FW + T+ SWMW+K+L+ R+ L + NGA
Sbjct: 275 RIISHADSLWVKWIHATLLKQVSFWAVRENTSLGSWMWKKVLKFRDAAIQLCKAEVNNGA 334
Query: 536 DTFI*QDPWT 565
TF D W+
Sbjct: 335 HTFFWYDNWS 344
Score = 39.3 bits (90), Expect(2) = 2e-19
Identities = 18/45 (40%), Positives = 27/45 (60%)
Frame = +3
Query: 63 ITSKIKTWKARFLLLAGRMELIK*VISSMQVYWSSVLMLPKKVLK 197
I KI +W ARFL AGR+ LI V+ S+ +W LP++ ++
Sbjct: 175 IKKKIGSWSARFLSYAGRLNLISSVLWSICNFWMGAFRLPRECIR 219
>gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata subsp. lyrata]
Length = 441
Score = 83.2 bits (204), Expect(2) = 3e-19
Identities = 40/126 (31%), Positives = 67/126 (53%), Gaps = 2/126 (1%)
Frame = +2
Query: 194 KRVESTSARFLWTGPSMSNKMHCISWKRIARDRKDGGLGFHELELQNKAGIARQVWDINS 373
K ++ + FLW+GP ++ K +SW + +++GGLG L NK + +W + S
Sbjct: 57 KEIDGLCSAFLWSGPELNRKKAKVSWNDVCMPKEEGGLGLRSLTEANKVCCLKLIWRLLS 116
Query: 374 NKSSIWVDWIKN-MIKW*HFWTMPITNN-ASWMWRKILQLRETIQDLIVHRIGNGADTFI 547
+ SS+WV W++ +I+ FW++ T+ SWMWRK+L+ R + I NG
Sbjct: 117 S-SSLWVQWLRQYVIRKGSFWSLRDTSTLGSWMWRKLLKYRHLASGFTQYEIRNGKGVSF 175
Query: 548 *QDPWT 565
D W+
Sbjct: 176 WHDNWS 181
Score = 40.8 bits (94), Expect(2) = 3e-19
Identities = 19/46 (41%), Positives = 26/46 (56%)
Frame = +3
Query: 60 KITSKIKTWKARFLLLAGRMELIK*VISSMQVYWSSVLMLPKKVLK 197
+I +I W AR L AGR++LI VI S+ +W S LP +K
Sbjct: 12 RIRERISCWTARHLSFAGRLQLISSVIHSLTNFWMSAFRLPNACIK 57
>emb|CAB72467.1| putative protein [Arabidopsis thaliana]
Length = 762
Score = 85.5 bits (210), Expect(2) = 5e-19
Identities = 41/126 (32%), Positives = 69/126 (54%), Gaps = 2/126 (1%)
Frame = +2
Query: 194 KRVESTSARFLWTGPSMSNKMHCISWKRIARDRKDGGLGFHELELQNKAGIARQVWDINS 373
+ +E + FLW+G ++++K ISW ++ + + +GGLG L+ N + VW I S
Sbjct: 390 QEIEKLCSSFLWSGTNLNSKKAKISWNQVCKPKSEGGLGLRSLKEANDVCCLKLVWRIIS 449
Query: 374 NKSSIWVDWIK-NMIKW*HFWTMPITNN-ASWMWRKILQLRETIQDLIVHRIGNGADTFI 547
+ S+WV W++ N++K FW + N SW+W+KIL+ R + +GNG T
Sbjct: 450 HGDSLWVKWVEHNLLKREIFWIVKENANLGSWIWKKILKYRGVAKRFCKAEVGNGESTSF 509
Query: 548 *QDPWT 565
D W+
Sbjct: 510 WFDDWS 515
Score = 37.7 bits (86), Expect(2) = 5e-19
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = +3
Query: 60 KITSKIKTWKARFLLLAGRMELIK*VISSMQVYWSSVLMLPKKVLKGLRVL 212
+I +I +W +RFL AGR LI +I S +W S LP+ ++ + L
Sbjct: 345 QIRKRIGSWSSRFLSFAGRFNLISSIIWSSCNFWLSAFQLPRACIQEIEKL 395
>gb|ABK28140.1| unknown [Arabidopsis thaliana]
Length = 349
Score = 78.6 bits (192), Expect(2) = 5e-19
Identities = 37/127 (29%), Positives = 68/127 (53%), Gaps = 2/127 (1%)
Frame = +2
Query: 194 KRVESTSARFLWTGPSMSNKMHCISWKRIARDRKDGGLGFHELELQNKAGIARQVWDINS 373
K +E + FLW+GP + I+W ++ +GGLG L+ N + +W + +
Sbjct: 61 KEIERLCSAFLWSGPDLKTHNAKIAWSKVCLPMCEGGLGLRPLKEINTVCGLKLIWRLLA 120
Query: 374 NKSSIWVDWIKN-MIKW*HFWTMPITN-NASWMWRKILQLRETIQDLIVHRIGNGADTFI 547
+++S+W W++ +I+ +FW + ++ SWMWRK+L LR+ + I NG +T
Sbjct: 121 SQTSLWGQWVQTYLIRRNNFWAIKASSYQGSWMWRKLLTLRDVARSFHKKEIHNGRNTSF 180
Query: 548 *QDPWTA 568
D W++
Sbjct: 181 WYDHWSS 187
Score = 44.7 bits (104), Expect(2) = 5e-19
Identities = 21/51 (41%), Positives = 30/51 (58%)
Frame = +3
Query: 60 KITSKIKTWKARFLLLAGRMELIK*VISSMQVYWSSVLMLPKKVLKGLRVL 212
KI +I +W RFL GR++LIK V+ S+ +WSS LP +K + L
Sbjct: 16 KIRKRISSWTGRFLSYCGRLQLIKSVLMSITNFWSSAFRLPGNCMKEIERL 66
>gb|ABE65398.1| hypothetical protein At1g43570 [Arabidopsis thaliana]
Length = 348
Score = 78.6 bits (192), Expect(2) = 5e-19
Identities = 37/127 (29%), Positives = 68/127 (53%), Gaps = 2/127 (1%)
Frame = +2
Query: 194 KRVESTSARFLWTGPSMSNKMHCISWKRIARDRKDGGLGFHELELQNKAGIARQVWDINS 373
K +E + FLW+GP + I+W ++ +GGLG L+ N + +W + +
Sbjct: 61 KEIERLCSAFLWSGPDLKTHNAKIAWSKVCLPMCEGGLGLRPLKEINTVCGLKLIWRLLA 120
Query: 374 NKSSIWVDWIKN-MIKW*HFWTMPITN-NASWMWRKILQLRETIQDLIVHRIGNGADTFI 547
+++S+W W++ +I+ +FW + ++ SWMWRK+L LR+ + I NG +T
Sbjct: 121 SQTSLWGQWVQTYLIRRNNFWAIKASSYQGSWMWRKLLTLRDVARSFHKKEIHNGRNTSF 180
Query: 548 *QDPWTA 568
D W++
Sbjct: 181 WYDHWSS 187
Score = 44.7 bits (104), Expect(2) = 5e-19
Identities = 21/51 (41%), Positives = 30/51 (58%)
Frame = +3
Query: 60 KITSKIKTWKARFLLLAGRMELIK*VISSMQVYWSSVLMLPKKVLKGLRVL 212
KI +I +W RFL GR++LIK V+ S+ +WSS LP +K + L
Sbjct: 16 KIRKRISSWTGRFLSYCGRLQLIKSVLMSITNFWSSAFRLPGNCMKEIERL 66