BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia22_contig00019966
         (3757 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I sub...  1582   0.0  
emb|CBI29879.3| unnamed protein product [Vitis vinifera]             1562   0.0  
ref|XP_007028854.1| Nuclear RNA polymerase A1, putative isoform ...  1437   0.0  
ref|XP_002526734.1| DNA-directed RNA polymerase I largest subuni...  1422   0.0  
ref|XP_006493898.1| PREDICTED: DNA-directed RNA polymerase I sub...  1420   0.0  
ref|XP_006421454.1| hypothetical protein CICLE_v10004132mg [Citr...  1414   0.0  
ref|XP_007028853.1| Nuclear RNA polymerase A1, putative isoform ...  1411   0.0  
emb|CAN70028.1| hypothetical protein VITISV_029145 [Vitis vinifera]  1400   0.0  
ref|XP_004165748.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...  1397   0.0  
ref|XP_004136744.1| PREDICTED: DNA-directed RNA polymerase I sub...  1394   0.0  
ref|XP_006588921.1| PREDICTED: DNA-directed RNA polymerase I sub...  1391   0.0  
ref|XP_007145632.1| hypothetical protein PHAVU_007G255400g [Phas...  1366   0.0  
ref|XP_006351332.1| PREDICTED: DNA-directed RNA polymerase I sub...  1353   0.0  
ref|XP_004249758.1| PREDICTED: DNA-directed RNA polymerase I sub...  1344   0.0  
ref|XP_004513648.1| PREDICTED: DNA-directed RNA polymerase I sub...  1340   0.0  
ref|XP_004513652.1| PREDICTED: DNA-directed RNA polymerase I sub...  1337   0.0  
ref|XP_003607990.1| DNA-directed RNA polymerase subunit beta [Me...  1325   0.0  
gb|EYU39881.1| hypothetical protein MIMGU_mgv1a000122mg [Mimulus...  1301   0.0  
ref|XP_006290488.1| hypothetical protein CARUB_v10016563mg [Caps...  1296   0.0  
ref|XP_002876429.1| hypothetical protein ARALYDRAFT_486216 [Arab...  1275   0.0  

>ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Vitis
            vinifera]
          Length = 1740

 Score = 1582 bits (4097), Expect = 0.0
 Identities = 828/1286 (64%), Positives = 981/1286 (76%), Gaps = 35/1286 (2%)
 Frame = -1

Query: 3757 VKKCALQLELIIKGDIVGAKXXXXXXXXXXXXXXXXDRVHVK---GLPRQVPNYNSKNLK 3587
            V+K   QLELI KGD+VGAK                D  HV     +     +  S +LK
Sbjct: 166  VQKYVSQLELISKGDVVGAKNLDSISPSESSYPEDSDGSHVSCSSTVNSSARDNCSVHLK 225

Query: 3586 QHSWTSLQYSEAMSLLDELMTGQKTECKRCGAKNPKITCPNFGWFHV-NMPNKYTRANII 3410
            Q  WTSLQ  EAMS++D  +  +  +CK C AK+P++T P FGWFH+  + +  TRAN+I
Sbjct: 226  QQEWTSLQCIEAMSVMDNFLKLKHRDCKNCKAKSPQVTKPTFGWFHMAGLSDAQTRANVI 285

Query: 3409 KGSKLNKLSMGKAKRNSTGEEENANDSSAMGD-VDSTDAESSGVVYDGTPDSAQKV---K 3242
            +GSKL +     A+  S+ E EN ND    GD VD+ +  SS    DG  D+  K    K
Sbjct: 286  RGSKLERPLSRVAEEKSSSEVENVNDMFPWGDGVDTDETHSSIAPTDGIQDTVTKRLERK 345

Query: 3241 GGYLYPEFLKQKEFFSGPLLPSEVKNHMKLLWENETQLCSLICDIQQERLSISGMKGNYS 3062
            G     EF+KQK FFSGPLLPSEV++ M+ LWENE +LCS I DI QERL  SG K  YS
Sbjct: 346  GAQAPIEFIKQKSFFSGPLLPSEVRDIMERLWENEAELCSFISDILQERLGASGNKAGYS 405

Query: 3061 MFFIEALLVPPIKFRPPSKGGDSVMEHPQTVLLNKVMYSNISLCNEHMNSSERSKIVPRW 2882
            MFF+E +LVPPIKFRPPSKG  SVMEHPQTVLL KV+ +NI+L N H N+SERSKI+ RW
Sbjct: 406  MFFLETILVPPIKFRPPSKGQISVMEHPQTVLLGKVLQANIALGNAHANNSERSKIISRW 465

Query: 2881 FDLQQSINVLFGNSKTAGL-RENMATGICQLLEKKEGIFRQKMMGKRVNYACRSVISPDP 2705
             DLQQSINVLF     AG  + +  +GICQLLEKKEG+FRQKMMGKRVN+ACRSVISPDP
Sbjct: 466  MDLQQSINVLFDGKTAAGQGQRDTGSGICQLLEKKEGVFRQKMMGKRVNFACRSVISPDP 525

Query: 2704 YLAVNEIGIPPYFALRLTYPERVTPWNVNKLRDAIINGAEVHPGATHYVDKLATVKLPPN 2525
            YLAVNEIGIPPYFALRLTYPE+VTPWNV KLRDAIING E+HPGATHYVDKL+TVKL  N
Sbjct: 526  YLAVNEIGIPPYFALRLTYPEKVTPWNVVKLRDAIINGPEIHPGATHYVDKLSTVKLAVN 585

Query: 2524 RKIRTSISRKLHSSRGVVAQPGKNLEHELEGKVVYRHLQDGDIVLVNRQPTLHKPSIMAH 2345
            +K+R SISRKL SSRGVVAQPG++ ++E EGK+VYRHLQDGDIVLVNRQPTLHKPSIMAH
Sbjct: 586  KKMRISISRKLPSSRGVVAQPGRSSDNEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAH 645

Query: 2344 VVRVLSGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAFNIVNANNQYILPTSG 2165
            VVRVL GEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEA+NIVNANNQYI+P+ G
Sbjct: 646  VVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYIVPSRG 705

Query: 2164 EPTRGLIQDHIVSAVLLTKKDTFLTWEEYNHLLYSSGVSAAARDFFSSKPGQKVSVINSE 1985
            +P RGLIQDHIVSAVLLTKKDTFLT E+YN LLYSSG+S+ +  F   KPG+KVSV++SE
Sbjct: 706  DPIRGLIQDHIVSAVLLTKKDTFLTREQYNQLLYSSGLSSGSGSFIG-KPGKKVSVLDSE 764

Query: 1984 AEIEPILPAILKPVPMWTGKQVITSLLNHISRTRGFEPLTVEKSGKIKKEYFGRKSDEAN 1805
             E++P+LPAI KP P+W+GKQVIT++LNHI  TRG +P T EK GKI +EYFG + DE  
Sbjct: 765  DEMQPLLPAIWKPEPLWSGKQVITAVLNHI--TRGRKPFTTEKDGKIPREYFGSEIDEKK 822

Query: 1804 -------------------------LLIQKNELVHGVIDKAQFGEYGLVHTVQEFYGSDT 1700
                                     LLI KNELV GVIDKAQF +YGLVH VQE YGS+T
Sbjct: 823  SGKGKDPGSDRRKEKRIEKKHGEYKLLIHKNELVRGVIDKAQFDKYGLVHMVQELYGSNT 882

Query: 1699 AGILLSVLSRLFTVFLQMHGFTCGVDDLLIVQELDMERMKKLQRSDKIGEEQHAKFIGAK 1520
            AGILLSVLSRLFTVFLQMHGFTCGVDDLLI    D+ R  +L +S+ IGE  H KFIG+ 
Sbjct: 883  AGILLSVLSRLFTVFLQMHGFTCGVDDLLISPNYDIARKIELDKSENIGELVHCKFIGSN 942

Query: 1519 EGDIDQMELQVEIEKAIRIKGESAITQLDRMMSSELNDLTSVVNSELFPKGLLKPFPKNC 1340
             G ID ++LQVE+EK I   GE+AIT+LDRMM +ELN+LTS VN +L  KGL+KPFPKNC
Sbjct: 943  HGKIDPVKLQVEVEKIILSNGEAAITRLDRMMKNELNELTSKVNKDLLLKGLVKPFPKNC 1002

Query: 1339 LSLMTTSGAKGSLVNFTQISSLLGQQQLEGKRVPRMVSGKTLPCFPPWDPASRAGGFITD 1160
            LSLMTT+GAKGS VNF+QISS LGQQ LEGKRVPRMVSGKTLPCFPPWD A+RAGGFI+D
Sbjct: 1003 LSLMTTTGAKGSTVNFSQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDCAARAGGFISD 1062

Query: 1159 RFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKSLECLKVCYDHTVRDADGS 980
            RFLTGL PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+K+LECLKVCYD+TVRD+DGS
Sbjct: 1063 RFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDYTVRDSDGS 1122

Query: 979  VVQFCYGEDGVDVHKTSFVTKFDTLAANQRVL-ERLGDHFEDAQMKSDDYIKELPEALEQ 803
            +VQF YG+DGVDVH+TSF+T+F+ LA N+ V+ E+ G        K + YI++LP+ L +
Sbjct: 1123 IVQFNYGDDGVDVHQTSFITEFEALAVNEEVVCEKFGQ-----DGKFNGYIQKLPKELRK 1177

Query: 802  KTKDFLSNLTKQQRHSLHLRKRKDFXXXXXXXXXXXLAQPGEPVGVIAAQSVGQPSTQMT 623
            KTK F+    ++++   +++K+KDF           LAQPGEPVGV+AAQSVG+PSTQMT
Sbjct: 1178 KTKKFIEGFMEERQDFDNMKKQKDFVNLVKQKYISSLAQPGEPVGVLAAQSVGEPSTQMT 1237

Query: 622  LNTFHHAGLGAMNVTLGIPRLQEILMRASETIQTPVMTCPLLMGKTWDDAKRLAATLKKV 443
            LNTFH AG G +NVTLGIPRLQEILM A+  I+TP+MTCPL MG++ DDA+RLAA LKKV
Sbjct: 1238 LNTFHLAGRGEVNVTLGIPRLQEILMTAANDIKTPIMTCPLQMGRSKDDAERLAAKLKKV 1297

Query: 442  SVADIVESIEVSVVPFSVKKHQVSSIYKLKMKLYRPELYPPFSDITLEDCLKTMEVLFVG 263
            +VADI ES+EVS+VPF+V+ HQ  SIYKLKMKLY P LYPP + I+LEDC +T+E +FV 
Sbjct: 1298 TVADITESMEVSIVPFTVQDHQTCSIYKLKMKLYEPALYPPHTGISLEDCEETLEAVFVR 1357

Query: 262  ELEEEIQAHLIMLSKISGIKNIVLSAQSGSSKDIDEGDTGSKSQQVXXXXXXXXXXXXXX 83
            ELE+ IQ HL++LSKISGIKN +  ++S +SK+ DE  +G     +              
Sbjct: 1358 ELEDAIQNHLLLLSKISGIKNFLPDSRSMASKETDEDASG---DGLAGGNGDEDDDGEDD 1414

Query: 82   XXXXDLGVDAQKRRRQATDEMDYEDA 5
                DLG+DAQKR++QA+DEMDY D+
Sbjct: 1415 GGAEDLGLDAQKRKQQASDEMDYGDS 1440


>emb|CBI29879.3| unnamed protein product [Vitis vinifera]
          Length = 1669

 Score = 1562 bits (4044), Expect = 0.0
 Identities = 819/1285 (63%), Positives = 971/1285 (75%), Gaps = 34/1285 (2%)
 Frame = -1

Query: 3757 VKKCALQLELIIKGDIVGAKXXXXXXXXXXXXXXXXDRVHVK---GLPRQVPNYNSKNLK 3587
            V+K   QLELI KGD+VGAK                D  HV     +     +  S +LK
Sbjct: 117  VQKYVSQLELISKGDVVGAKNLDSISPSESSYPEDSDGSHVSCSSTVNSSARDNCSVHLK 176

Query: 3586 QHSWTSLQYSEAMSLLDELMTGQKTECKRCGAKNPKITCPNFGWFHV-NMPNKYTRANII 3410
            Q  WTSLQ  EAMS++D  +  +  +CK C AK+P++T P FGWFH+  + +  TRAN+I
Sbjct: 177  QQEWTSLQCIEAMSVMDNFLKLKHRDCKNCKAKSPQVTKPTFGWFHMAGLSDAQTRANVI 236

Query: 3409 KGSKLNKLSMGKAKRNSTGEEENANDSSAMGDVDSTDAESSGVVYDGTPDSAQKV---KG 3239
            +GSKL +                      +  VD+ +  SS    DG  D+  K    KG
Sbjct: 237  RGSKLER---------------------PLNGVDTDETHSSIAPTDGIQDTVTKRLERKG 275

Query: 3238 GYLYPEFLKQKEFFSGPLLPSEVKNHMKLLWENETQLCSLICDIQQERLSISGMKGNYSM 3059
                 EF+KQK FFSGPLLPSEV++ M+ LWENE +LCS I DI QERL  SG K  YSM
Sbjct: 276  AQAPIEFIKQKSFFSGPLLPSEVRDIMERLWENEAELCSFISDILQERLGASGNKAGYSM 335

Query: 3058 FFIEALLVPPIKFRPPSKGGDSVMEHPQTVLLNKVMYSNISLCNEHMNSSERSKIVPRWF 2879
            FF+E +LVPPIKFRPPSKG  SVMEHPQTVLL KV+ +NI+L N H N+SERSKI+ RW 
Sbjct: 336  FFLETILVPPIKFRPPSKGQISVMEHPQTVLLGKVLQANIALGNAHANNSERSKIISRWM 395

Query: 2878 DLQQSINVLFGNSKTAGL-RENMATGICQLLEKKEGIFRQKMMGKRVNYACRSVISPDPY 2702
            DLQQSINVLF     AG  + +  +GICQLLEKKEG+FRQKMMGKRVN+ACRSVISPDPY
Sbjct: 396  DLQQSINVLFDGKTAAGQGQRDTGSGICQLLEKKEGVFRQKMMGKRVNFACRSVISPDPY 455

Query: 2701 LAVNEIGIPPYFALRLTYPERVTPWNVNKLRDAIINGAEVHPGATHYVDKLATVKLPPNR 2522
            LAVNEIGIPPYFALRLTYPE+VTPWNV KLRDAIING E+HPGATHYVDKL+TVKL  N+
Sbjct: 456  LAVNEIGIPPYFALRLTYPEKVTPWNVVKLRDAIINGPEIHPGATHYVDKLSTVKLAVNK 515

Query: 2521 KIRTSISRKLHSSRGVVAQPGKNLEHELEGKVVYRHLQDGDIVLVNRQPTLHKPSIMAHV 2342
            K+R SISRKL SSRGVVAQPG++ ++E EGK+VYRHLQDGDIVLVNRQPTLHKPSIMAHV
Sbjct: 516  KMRISISRKLPSSRGVVAQPGRSSDNEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHV 575

Query: 2341 VRVLSGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAFNIVNANNQYILPTSGE 2162
            VRVL GEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEA+NIVNANNQYI+P+ G+
Sbjct: 576  VRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYIVPSRGD 635

Query: 2161 PTRGLIQDHIVSAVLLTKKDTFLTWEEYNHLLYSSGVSAAARDFFSSKPGQKVSVINSEA 1982
            P RGLIQDHIVSAVLLTKKDTFLT E+YN LLYSSG+S+ +  F   KPG+KVSV++SE 
Sbjct: 636  PIRGLIQDHIVSAVLLTKKDTFLTREQYNQLLYSSGLSSGSGSFIG-KPGKKVSVLDSED 694

Query: 1981 EIEPILPAILKPVPMWTGKQVITSLLNHISRTRGFEPLTVEKSGKIKKEYFGRKSDEAN- 1805
            E++P+LPAI KP P+W+GKQVIT++LNHI  TRG +P T EK GKI +EYFG + DE   
Sbjct: 695  EMQPLLPAIWKPEPLWSGKQVITAVLNHI--TRGRKPFTTEKDGKIPREYFGSEIDEKKS 752

Query: 1804 ------------------------LLIQKNELVHGVIDKAQFGEYGLVHTVQEFYGSDTA 1697
                                    LLI KNELV GVIDKAQF +YGLVH VQE YGS+TA
Sbjct: 753  GKGKDPGSDRRKEKRIEKKHGEYKLLIHKNELVRGVIDKAQFDKYGLVHMVQELYGSNTA 812

Query: 1696 GILLSVLSRLFTVFLQMHGFTCGVDDLLIVQELDMERMKKLQRSDKIGEEQHAKFIGAKE 1517
            GILLSVLSRLFTVFLQMHGFTCGVDDLLI    D+ R  +L +S+ IGE  H KFIG+  
Sbjct: 813  GILLSVLSRLFTVFLQMHGFTCGVDDLLISPNYDIARKIELDKSENIGELVHCKFIGSNH 872

Query: 1516 GDIDQMELQVEIEKAIRIKGESAITQLDRMMSSELNDLTSVVNSELFPKGLLKPFPKNCL 1337
            G ID ++LQVE+EK I   GE+AIT+LDRMM +ELN+LTS VN +L  KGL+KPFPKNCL
Sbjct: 873  GKIDPVKLQVEVEKIILSNGEAAITRLDRMMKNELNELTSKVNKDLLLKGLVKPFPKNCL 932

Query: 1336 SLMTTSGAKGSLVNFTQISSLLGQQQLEGKRVPRMVSGKTLPCFPPWDPASRAGGFITDR 1157
            SLMTT+GAKGS VNF+QISS LGQQ LEGKRVPRMVSGKTLPCFPPWD A+RAGGFI+DR
Sbjct: 933  SLMTTTGAKGSTVNFSQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDCAARAGGFISDR 992

Query: 1156 FLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKSLECLKVCYDHTVRDADGSV 977
            FLTGL PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+K+LECLKVCYD+TVRD+DGS+
Sbjct: 993  FLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDYTVRDSDGSI 1052

Query: 976  VQFCYGEDGVDVHKTSFVTKFDTLAANQRVL-ERLGDHFEDAQMKSDDYIKELPEALEQK 800
            VQF YG+DGVDVH+TSF+T+F+ LA N+ V+ E+ G        K + YI++LP+ L +K
Sbjct: 1053 VQFNYGDDGVDVHQTSFITEFEALAVNEEVVCEKFGQ-----DGKFNGYIQKLPKELRKK 1107

Query: 799  TKDFLSNLTKQQRHSLHLRKRKDFXXXXXXXXXXXLAQPGEPVGVIAAQSVGQPSTQMTL 620
            TK F+    ++++   +++K+KDF           LAQPGEPVGV+AAQSVG+PSTQMTL
Sbjct: 1108 TKKFIEGFMEERQDFDNMKKQKDFVNLVKQKYISSLAQPGEPVGVLAAQSVGEPSTQMTL 1167

Query: 619  NTFHHAGLGAMNVTLGIPRLQEILMRASETIQTPVMTCPLLMGKTWDDAKRLAATLKKVS 440
            NTFH AG G +NVTLGIPRLQEILM A+  I+TP+MTCPL MG++ DDA+RLAA LKKV+
Sbjct: 1168 NTFHLAGRGEVNVTLGIPRLQEILMTAANDIKTPIMTCPLQMGRSKDDAERLAAKLKKVT 1227

Query: 439  VADIVESIEVSVVPFSVKKHQVSSIYKLKMKLYRPELYPPFSDITLEDCLKTMEVLFVGE 260
            VADI ES+EVS+VPF+V+ HQ  SIYKLKMKLY P LYPP + I+LEDC +T+E +FV E
Sbjct: 1228 VADITESMEVSIVPFTVQDHQTCSIYKLKMKLYEPALYPPHTGISLEDCEETLEAVFVRE 1287

Query: 259  LEEEIQAHLIMLSKISGIKNIVLSAQSGSSKDIDEGDTGSKSQQVXXXXXXXXXXXXXXX 80
            LE+ IQ HL++LSKISGIKN +  ++S +SK+ DE  +G     +               
Sbjct: 1288 LEDAIQNHLLLLSKISGIKNFLPDSRSMASKETDEDASG---DGLAGGNGDEDDDGEDDG 1344

Query: 79   XXXDLGVDAQKRRRQATDEMDYEDA 5
               DLG+DAQKR++QA+DEMDY D+
Sbjct: 1345 GAEDLGLDAQKRKQQASDEMDYGDS 1369


>ref|XP_007028854.1| Nuclear RNA polymerase A1, putative isoform 2 [Theobroma cacao]
            gi|508717459|gb|EOY09356.1| Nuclear RNA polymerase A1,
            putative isoform 2 [Theobroma cacao]
          Length = 1689

 Score = 1437 bits (3720), Expect = 0.0
 Identities = 771/1287 (59%), Positives = 939/1287 (72%), Gaps = 37/1287 (2%)
 Frame = -1

Query: 3757 VKKCALQLELIIKGDIVGAKXXXXXXXXXXXXXXXXDRVHVKGLPRQVPNYNSKNLKQHS 3578
            V++C  QL+LI  GDIVGAK                +     G       +NS+ +K   
Sbjct: 117  VERCVSQLKLIGNGDIVGAKRLDSDSADASSYSDYNEGSQESG----SIVHNSEAVKPKE 172

Query: 3577 WTSLQYSEAMSLLDELMTGQKTECKRCGAKNPKITCPNFGWFHVN-MPNKYTRANIIKGS 3401
            WTSLQ  EAMS+L+  +  +  +CK C AKNP IT P FGW H+N M     R N+I+G 
Sbjct: 173  WTSLQLMEAMSVLNNFLKLKYNKCKNCDAKNPNITKPVFGWLHMNGMLGAQMRENVIRGC 232

Query: 3400 KLNKLSMGKAKRNSTGEEENANDSSAMGDVDSTDAESSGVVYDGTPDSAQKV--KGGYLY 3227
            K+      +A    +G E+  + SS+   VD  + ++S + + G+  +  K   K   + 
Sbjct: 233  KMVDTFSDEA---GSGLEDADDVSSSGNGVDIAEMDTSEIGFTGSEGNGAKARKKKAQVP 289

Query: 3226 PEFLKQKEFFSGPLLPSEVKNHMKLLWENETQLCSLICDIQQERLSISGMKGNYSMFFIE 3047
             EF+KQK  FSGPLLPSEVK   KLLWENE +LCS+I DIQQ+     G K  YSMFF+E
Sbjct: 290  LEFMKQKNLFSGPLLPSEVKKITKLLWENEVELCSIISDIQQQGF---GKKVGYSMFFLE 346

Query: 3046 ALLVPPIKFRPPSKGGDSVMEHPQTVLLNKVMYSNISLCNEHMNSSERSKIVPR-WFDLQ 2870
             +LVPPIKFR P+KGGDSVMEHPQTVLL+KV+ +NISL N + N+ + SK V R W DLQ
Sbjct: 347  TILVPPIKFRAPTKGGDSVMEHPQTVLLSKVLQANISLGNAYTNNLQSSKAVVRLWMDLQ 406

Query: 2869 QSINVLFGNSKTAGLRENMATGICQLLEKKEGIFRQKMMGKRVNYACRSVISPDPYLAVN 2690
            QS+N+LF +        ++++GICQLLEKKEG+FRQKMMGKRVN+ACRSVISPDPYLAVN
Sbjct: 407  QSVNLLFDSKTAMSQGRDVSSGICQLLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAVN 466

Query: 2689 EIGIPPYFALRLTYPERVTPWNVNKLRDAIINGAEVHPGATHYVDKLATVKLPPNRKIRT 2510
            EIGIPPYFALRLTYPERVTPWNV KLR+AIING+E HPGATHYVDKL+T +LPP++K R 
Sbjct: 467  EIGIPPYFALRLTYPERVTPWNVVKLREAIINGSEFHPGATHYVDKLSTKRLPPSQKARI 526

Query: 2509 SISRKLHSSRGVVAQPGKNLEHELEGKVVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVL 2330
            SISRKL SSRG +AQPGKNL++E EGK+V RHLQDGD+VLVNRQPTLHKPSIMAHVVRVL
Sbjct: 527  SISRKLPSSRGAIAQPGKNLDYEFEGKIVLRHLQDGDVVLVNRQPTLHKPSIMAHVVRVL 586

Query: 2329 SGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAFNIVNANNQYILPTSGEPTRG 2150
             GEKT+RMHYANCSTYNADFDGDE+NVHFPQDEISRAEA+NIVNANNQY+ P++GEP R 
Sbjct: 587  KGEKTIRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVRPSNGEPIRA 646

Query: 2149 LIQDHIVSAVLLTKKDTFLTWEEYNHLLYSSGVSAAARDFFSSKPGQKVSVINSEAEIEP 1970
            LIQDHIVSAVLLTK+DTFL+ +E+N LLYSSGVS+ A++ FS KPGQKV V  SE  + P
Sbjct: 647  LIQDHIVSAVLLTKRDTFLSRDEFNQLLYSSGVSSLAQNSFSGKPGQKVFVSTSEEGMLP 706

Query: 1969 ILPAILKPVPMWTGKQVITSLLNHISRTRGFEPLTVEKSGKIKKEYF------------- 1829
            I+PAILKP P+WTGKQVI+S+L+HI  TRG  P TV K+ KI +++F             
Sbjct: 707  IIPAILKPKPLWTGKQVISSVLSHI--TRGRPPFTVGKTAKIPRDFFRNRRNKNKQSSRE 764

Query: 1828 -------GRKS-----------DEANLLIQKNELVHGVIDKAQFGEYGLVHTVQEFYGSD 1703
                   G+K+           DE  +LI +N+LV GVIDKAQF +YGLVHTVQE YGS+
Sbjct: 765  ENQPKNDGQKAKVAEKNSKKEPDEEKILIYRNDLVRGVIDKAQFADYGLVHTVQELYGSN 824

Query: 1702 TAGILLSVLSRLFTVFLQMHGFTCGVDDLLIVQELDMERMKKLQRSDKIGEEQHAKFIGA 1523
            TAGILLSV SRLFTVFLQMHGFTCGVDDLLI+++ D+ER K+L+  +K   E H +  G 
Sbjct: 825  TAGILLSVFSRLFTVFLQMHGFTCGVDDLLIMEDKDIERKKQLEDCEKKVTEAHYELFGV 884

Query: 1522 KEGDIDQMELQVEIEKAIRIKGESAITQLDRMMSSELNDLTSV-VNSELFPKGLLKPFPK 1346
            K     + ELQ+EIE+ IR  GE+A+T LDR M S LN+ +S  V +EL  +GL+K   +
Sbjct: 885  KVN--SETELQLEIERTIRRDGETALTALDRKMISVLNENSSKGVLTELLSEGLVKSMGE 942

Query: 1345 NCLSLMTTSGAKGSLVNFTQISSLLGQQQLEGKRVPRMVSGKTLPCFPPWDPASRAGGFI 1166
            NC+SLMTTSGAKGS VNF QISS LGQQ+LEGKRVPRMVSGKTLPCF PWD A+RAGGFI
Sbjct: 943  NCISLMTTSGAKGSKVNFQQISSFLGQQELEGKRVPRMVSGKTLPCFHPWDWAARAGGFI 1002

Query: 1165 TDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKSLECLKVCYDHTVRDAD 986
            +DRFL+GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+K+LECLK+ YDHTVRDAD
Sbjct: 1003 SDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDHTVRDAD 1062

Query: 985  GSVVQFCYGEDGVDVHKTSFVTKFDTLAANQRVL-ERLGDHFEDAQMKSDDYIKELPEAL 809
            GS+VQF YGEDG+DVH+TSF+ KF+ LA NQ ++ E+L     +     DD  K LP+ L
Sbjct: 1063 GSIVQFIYGEDGIDVHQTSFIAKFEALALNQDMMSEKLCSQLGE----PDDSDKILPDGL 1118

Query: 808  EQKTKDFLSNLTKQQRHSLHLRKRKDFXXXXXXXXXXXLAQPGEPVGVIAAQSVGQPSTQ 629
              K + F+    K+ +H     K KDF           LAQPGEPVGV+AAQSVG+PSTQ
Sbjct: 1119 RSKAEQFIREEIKKYQH--QKIKPKDFLNLLKLKFLSSLAQPGEPVGVLAAQSVGEPSTQ 1176

Query: 628  MTLNTFHHAGLGAMNVTLGIPRLQEILMRASETIQTPVMTCPLLMGKTWDDAKRLAATLK 449
            MTLNTFH AG G MNVTLGIPRLQEILM AS  I+TPVMTCPL  GKT +DA  LA  +K
Sbjct: 1177 MTLNTFHLAGRGEMNVTLGIPRLQEILMTASIDIRTPVMTCPLHKGKTKEDALCLANKMK 1236

Query: 448  KVSVADIVESIEVSVVPFSVKKHQVSSIYKLKMKLYRPELYPPFSDITLEDCLKTMEVLF 269
            K++VADI+ES+EVSV PF+V    + SIYKLKM L +P+ Y   SDIT++DC   ++V+F
Sbjct: 1237 KITVADILESMEVSVAPFAVDNGDICSIYKLKMMLGKPDKYFENSDITVKDCEHILKVVF 1296

Query: 268  VGELEEEIQAHLIMLSKISGIKNIVLSAQSGSSKDIDEGDTGSKSQQVXXXXXXXXXXXX 89
            + ELE+ IQ HL++LSKISGIK  +  +Q  +S ++DE  +  +S++             
Sbjct: 1297 LRELEDAIQNHLVLLSKISGIKKFMPDSQRNASNEMDEDVSEGRSRETKNDDDDDDDDAD 1356

Query: 88   XXXXXXDLGVDAQKRRRQATDEMDYED 8
                  DLG+DAQK+++Q TDEMDYED
Sbjct: 1357 DEERAEDLGLDAQKQKQQTTDEMDYED 1383


>ref|XP_002526734.1| DNA-directed RNA polymerase I largest subunit, putative [Ricinus
            communis] gi|223533923|gb|EEF35648.1| DNA-directed RNA
            polymerase I largest subunit, putative [Ricinus communis]
          Length = 1686

 Score = 1422 bits (3681), Expect = 0.0
 Identities = 778/1282 (60%), Positives = 916/1282 (71%), Gaps = 32/1282 (2%)
 Frame = -1

Query: 3757 VKKCALQLELIIKGDIVGAKXXXXXXXXXXXXXXXXDRVHVK--GLPRQVPNYNSKNLKQ 3584
            V+KC  QLELI+KGDIVGAK                D  H     +   V   + ++ +Q
Sbjct: 120  VEKCIKQLELIVKGDIVGAKRLESVSPSEALYPEESDLSHESCPTIHSGVQCNDGEHTRQ 179

Query: 3583 HSWTSLQYSEAMSLLDELMTGQKTECKRCGAKNPKITCPNFGWFHVN-MPNKYTRANIIK 3407
              WTSLQ++EAMS+L+  +  +  +CK C + NP IT P FGWFH + M +   RAN+I 
Sbjct: 180  QGWTSLQFTEAMSVLNNFLKPKFKKCKNCESSNPNITKPTFGWFHTSGMSDASIRANVIT 239

Query: 3406 GSKLNKLSMGKAKRNSTGEEENANDSSAMGDVDSTDAESSGVVYDGTPDSAQKVKGGYLY 3227
            G +L  L                  S   G  D  DA   G  + GT    +K +   L 
Sbjct: 240  GHQLGGLL----------------GSEIEGTTDVEDAAEPGDQHSGTKKHKKKERKEVL- 282

Query: 3226 PEFLKQKEFFSGPLLPSEVKNHMKLLWENETQLCSLICDIQQERLSISGMKGNYSMFFIE 3047
             EF +QK  FS  LLPSEVK  ++LLW+NE ++CS I D+QQ+       K   +MFF+E
Sbjct: 283  -EFTRQKSTFSKQLLPSEVKEKLELLWKNEARICSFISDLQQQEFG--KRKAGPAMFFLE 339

Query: 3046 ALLVPPIKFRPPSKGGDSVMEHPQTVLLNKVMYSNISLCNEHMNSSERSKIVPRWFDLQQ 2867
             +LVPPIKFRPP+KGGDSVMEHPQTVLL+KV+ SNISL + H+N  E SKIV RW DLQQ
Sbjct: 340  TILVPPIKFRPPTKGGDSVMEHPQTVLLSKVLQSNISLGDAHINK-EHSKIVRRWLDLQQ 398

Query: 2866 SINVLFGNSKTA---GLRENMATGICQLLEKKEGIFRQKMMGKRVNYACRSVISPDPYLA 2696
            SIN LF +SKTA   G RE  A GICQLLEKKEG+FRQKMMGKRVNYACRSVISPDPY+ 
Sbjct: 399  SINTLF-DSKTAKGPGQREG-APGICQLLEKKEGLFRQKMMGKRVNYACRSVISPDPYIG 456

Query: 2695 VNEIGIPPYFALRLTYPERVTPWNVNKLRDAIINGAEVHPGATHYVDKLATVKLPPNRKI 2516
            VNEIGIPP FA++LTYPERVTPWN+ KLR+A+ING+E HPGATHYVDKL+  KLPP RK 
Sbjct: 457  VNEIGIPPCFAVKLTYPERVTPWNIAKLRNAVINGSECHPGATHYVDKLSINKLPPARKA 516

Query: 2515 RTSISRKLHSSRGVVAQPGKNLEHELEGKVVYRHLQDGDIVLVNRQPTLHKPSIMAHVVR 2336
            R SISRKL SSRG V Q GK  E E EGK+VYRHLQDGD+VLVNRQPTLHKPSIMAHVVR
Sbjct: 517  RISISRKLPSSRGAVTQAGKGSECEFEGKIVYRHLQDGDVVLVNRQPTLHKPSIMAHVVR 576

Query: 2335 VLSGEKTLRMHYANCS-TYNADFDGDEMNVHFPQDEISRAEAFNIVNANNQYILPTSGEP 2159
            VL GEKTLRMHYANCS TYNADFDGDEMNVHFPQDE+SRAEA+NIVNANNQ++ P++GEP
Sbjct: 577  VLKGEKTLRMHYANCSITYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQFVRPSNGEP 636

Query: 2158 TRGLIQDHIVSAVLLTKKDTFLTWEEYNHLLYSSGVSAAARDFFSSKPGQKVSVINSEAE 1979
             RGLIQDHIVSAVLLTKKDTFL+ +E+N LLYSSGVS    + F  +PGQKV    SE E
Sbjct: 637  LRGLIQDHIVSAVLLTKKDTFLSQDEFNQLLYSSGVSTVGPNSFHGRPGQKVLWSRSEDE 696

Query: 1978 IEPILPAILKPVPMWTGKQVITSLLNHISRTRGFEPLTVEKSGKIKKEYF---------- 1829
            I+ + PAI KP P+WTGKQVIT++LNHI  T    P TVEK  KI   +F          
Sbjct: 697  IQTLPPAIWKPKPLWTGKQVITAILNHI--TSDHPPFTVEKDAKIPSNFFKSRANEDKPC 754

Query: 1828 -----------GRKSDEANLLIQKNELVHGVIDKAQFGEYGLVHTVQEFYGSDTAGILLS 1682
                        ++ DE  +L+ KNELV GVIDK QFGEYGLVHTV E  GS TAGILLS
Sbjct: 755  QEEKSDKDAPAEKEPDEEKMLVYKNELVRGVIDKGQFGEYGLVHTVHELLGSHTAGILLS 814

Query: 1681 VLSRLFTVFLQMHGFTCGVDDLLIVQELDMERMKKLQRSDKIGEEQHAKFIGAKEG--DI 1508
            VLSRLFT +LQMHGFTCGVDDLLI+   D ER K+L+  +K GE  H  FIG K+    I
Sbjct: 815  VLSRLFTAYLQMHGFTCGVDDLLILTNKDEERKKQLEWCEKSGEAVHRNFIGIKDEKIKI 874

Query: 1507 DQMELQVEIEKAIRIKGESAITQLDRMMSSELNDLTSV-VNSELFPKGLLKPFPKNCLSL 1331
            D + +Q+ IEK IR  G+SA+  LDR MS+ELN  TS  V S L   GLLKP  KNC+SL
Sbjct: 875  DPVAMQLNIEKTIRSDGDSALAYLDRQMSNELNTKTSSGVISNLLSDGLLKPSGKNCISL 934

Query: 1330 MTTSGAKGSLVNFTQISSLLGQQQLEGKRVPRMVSGKTLPCFPPWDPASRAGGFITDRFL 1151
            MTTSGAKGS VNF QISS LGQQ+LEGKRVPRMVSGKTLPCF PWD A+R+GG+ITDRFL
Sbjct: 935  MTTSGAKGSKVNFQQISSFLGQQELEGKRVPRMVSGKTLPCFHPWDWAARSGGYITDRFL 994

Query: 1150 TGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKSLECLKVCYDHTVRDADGSVVQ 971
            TGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+K+LECLK+ YDHTVRDADGSVVQ
Sbjct: 995  TGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKIGYDHTVRDADGSVVQ 1054

Query: 970  FCYGEDGVDVHKTSFVTKFDTLAANQ-RVLERLGDHFEDAQMKSDDYIKELPEALEQKTK 794
            F YGEDGVDVH+TSF+ KF  LA NQ  + +R G          + YI ELPEAL++K  
Sbjct: 1055 FYYGEDGVDVHQTSFIAKFKELALNQDMIYKRSGGQLG----AFNSYISELPEALKEKAD 1110

Query: 793  DFLSNLTKQQRHSLHLRKRKDFXXXXXXXXXXXLAQPGEPVGVIAAQSVGQPSTQMTLNT 614
             FL + +   R + +L KR+D            LAQPGEPVGV+AAQSVG+PSTQMTLNT
Sbjct: 1111 RFLDDFSIMGRIASNLVKREDLYNLMKQKFLLSLAQPGEPVGVLAAQSVGEPSTQMTLNT 1170

Query: 613  FHHAGLGAMNVTLGIPRLQEILMRASETIQTPVMTCPLLMGKTWDDAKRLAATLKKVSVA 434
            FH AG G MNVTLGIPRLQEILM AS  I+TP+MTCPL  G+T +DA  LA  L+KV+VA
Sbjct: 1171 FHLAGRGEMNVTLGIPRLQEILMTASIDIKTPIMTCPLQEGRTNEDADHLADKLRKVTVA 1230

Query: 433  DIVESIEVSVVPFSVKKHQVSSIYKLKMKLYRPELYPPFSDITLEDCLKTMEVLFVGELE 254
            DIVES+EVSVVPF+++   V  IYKLKMKLYRP  YP +++I++ED  +T+EV+F+ ELE
Sbjct: 1231 DIVESMEVSVVPFAIQDGGVCRIYKLKMKLYRPAHYPQYANISVEDWEETLEVVFLRELE 1290

Query: 253  EEIQAHLIMLSKISGIKNIVLSAQSGSSKDIDEGDTGSKSQQVXXXXXXXXXXXXXXXXX 74
            + IQ H+ +LS+ISGIK+ +  ++S +S + DE   G  S +                  
Sbjct: 1291 DAIQNHMFLLSRISGIKDFLPESRSRASGEADEDVAGDMSHR---EERDDDNDDDDGERA 1347

Query: 73   XDLGVDAQKRRRQATDEMDYED 8
             DLG+DAQKR+ QATDEMDY+D
Sbjct: 1348 DDLGLDAQKRKLQATDEMDYDD 1369


>ref|XP_006493898.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Citrus
            sinensis]
          Length = 1715

 Score = 1420 bits (3677), Expect = 0.0
 Identities = 766/1314 (58%), Positives = 938/1314 (71%), Gaps = 64/1314 (4%)
 Frame = -1

Query: 3757 VKKCALQLELIIKGDIVGAKXXXXXXXXXXXXXXXXDRVHVKGLPRQVP--NY-NSKNLK 3587
            V+KC  +LELIIKGDI+ AK                D  +        P  NY N +NLK
Sbjct: 117  VEKCVRKLELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLK 176

Query: 3586 QHSWTSLQYSEAMSLLDELMTGQKTECKRCGAKNPKITCPNFGWFHVN-MPNKYTRANII 3410
               WTSLQ++EA   L + +  + T+C  C AKNP+I+ P FGW H+N MP+   RAN+I
Sbjct: 177  PQEWTSLQFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNGMPHADIRANLI 236

Query: 3409 KGSKLNKLSMGKAKRNSTGEEENANDSSAMGDVDSTDAESSGVVYDGTPDSAQK--VKGG 3236
            +G  L +   G       GEEE   D  A  DVD+ +  S    + GT D+A +   KG 
Sbjct: 237  RGCNLGETFSG-------GEEEK--DLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGS 287

Query: 3235 YLYPE-FLKQKEFFSGPLLPSEVKNHMKLLWENETQLCSLICDIQQERLSISGMKGNYSM 3059
               P  F KQK+ FSGPLLPS+VK+ ++ LWENE +LCS I D+QQ+     G K  +S+
Sbjct: 288  GAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGF---GKKAGHSI 344

Query: 3058 FFIEALLVPPIKFRPPSKGGDSVMEHPQTVLLNKVMYSNISLCNEHMNSSERSKI-VPRW 2882
            FF+ A+LVPPIKFR PSKGGDSVMEHPQTVLL+KV+ +NI L N ++N  + +KI V RW
Sbjct: 345  FFLGAVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKIIVTRW 404

Query: 2881 FDLQQSINVLFGNSKTAGLRENMATGICQLLEKKEGIFRQKMMGKRVNYACRSVISPDPY 2702
             +LQQS+NVLF     AG R+ MA+GICQLLEKKEG+FRQK+MGKRVNYACRSVISPDPY
Sbjct: 405  MNLQQSVNVLFDGKNAAGQRD-MASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPY 463

Query: 2701 LAVNEIGIPPYFALRLTYPERVTPWNVNKLRDAIINGAEVHPGATHYVDKLATVKLPPNR 2522
            LAVNEIGIPPYFALRLTYPERVTPWNV KLRD+IINGAE+HPGATHY+DKL+T++LPPN+
Sbjct: 464  LAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNK 523

Query: 2521 KIRTSISRKLHSSRGVVAQPGKNLEHELEGKVVYRHLQDGDIVLVNRQPTLHKPSIMAHV 2342
            K+R SI+RKL +SRG + QPGK+ ++E EGK+VYRHLQDGD+VLVNRQPTLHKPSIMAHV
Sbjct: 524  KMRISIARKLDTSRGAIVQPGKDSDNEFEGKIVYRHLQDGDVVLVNRQPTLHKPSIMAHV 583

Query: 2341 VRVLSGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAFNIVNANNQYILPTSGE 2162
            VRVL GEKTLRMHYANCSTYNADFDGDEMNVHFPQDE+SRAEA+NIVNANNQY+ P++G+
Sbjct: 584  VRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGD 643

Query: 2161 PTRGLIQDHIVSAVLLTKKDTFLTWEEYNHLLYSSGVSAAARDFFSSKPGQKVSVINSEA 1982
            P R LIQDHIVSA LLTKKDTFL  +E+  LLYSSGVS++    F+ KPGQ+V +  SE 
Sbjct: 644  PLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQ 703

Query: 1981 EIEPILPAILKPVPMWTGKQVITSLLNHISRTRGFEPLTVEKSGKIKKEYF--------- 1829
            E+ P+LPAI KP P+WTGKQVIT++LNHI  TRG  P  VE+ GK+ +++F         
Sbjct: 704  EVLPLLPAIWKPEPLWTGKQVITAVLNHI--TRGRPPFVVERGGKLPQDFFKTRFNADKQ 761

Query: 1828 ----------------------GRKSD-----------------------EANLLIQKNE 1784
                                  G+K +                       E  LLI KN+
Sbjct: 762  SDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKND 821

Query: 1783 LVHGVIDKAQFGEYGLVHTVQEFYGSDTAGILLSVLSRLFTVFLQMHGFTCGVDDLLIVQ 1604
            LV GVIDKAQF +YGLVHTVQE YGS+TAG LLS LSRLFTVFLQMHGFTCGVDDLLI++
Sbjct: 822  LVRGVIDKAQFADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILK 881

Query: 1603 ELDMERMKKLQRSDKIGEEQHAKFIGAKEG-DIDQMELQVEIEKAIRIKGESAITQLDRM 1427
            + + ER   L  S++IG+  H + +  ++G +ID ++L+ EIEKA+R  G++A+   D  
Sbjct: 882  DKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMK 941

Query: 1426 MSSELNDLT-SVVNSELFPKGLLKPFPKNCLSLMTTSGAKGSLVNFTQISSLLGQQQLEG 1250
            M+S+LN  T S V +EL  +GLLKP  KN +SLMTTSGAKGS VNF QISS LGQQ+LEG
Sbjct: 942  MTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEG 1001

Query: 1249 KRVPRMVSGKTLPCFPPWDPASRAGGFITDRFLTGLRPQEYYFHCMAGREGLVDTAVKTS 1070
            KRVPRMVSGKTLP F PWD A RAGGFI DRFLTGLRPQEYYFHCMAGREGLVDTAVKTS
Sbjct: 1002 KRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTS 1061

Query: 1069 RSGYLQRCLVKSLECLKVCYDHTVRDADGSVVQFCYGEDGVDVHKTSFVTKFDTLAANQR 890
            RSGYLQRCL+K+LECLK+ YD++VRDADGS+VQFCYGEDGVDVH+TSF++KFD LAANQ 
Sbjct: 1062 RSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAANQE 1121

Query: 889  VLERLGDHFEDAQMKSDDYIKELPEALEQKTKDFLSNLTKQQRHSLHLRKRKDFXXXXXX 710
            ++ +      DA   S+ YI ELP+AL+   + F       +        ++DF      
Sbjct: 1122 MIYKKCSGQLDA---SNAYIMELPDALKDNAEKFADKFLSNE------MAKQDFLKLVKH 1172

Query: 709  XXXXXLAQPGEPVGVIAAQSVGQPSTQMTLNTFHHAGLGAMNVTLGIPRLQEILMRASET 530
                 LAQPGEPVG++A+QSVG+PSTQMTLNTFH AG G MNVTLGIPRLQEIL  AS+ 
Sbjct: 1173 KFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKD 1232

Query: 529  IQTPVMTCPLLMGKTWDDAKRLAATLKKVSVADIVESIEVSVVPFSVKKHQVSSIYKLKM 350
            I+TPV+TCPLL+GKT DDAKRLA  LKK++VADIV+ I V V  F+    Q  S+Y L M
Sbjct: 1233 IKTPVITCPLLVGKTEDDAKRLADKLKKITVADIVKKISVKVRAFTSHDGQACSVYVLTM 1292

Query: 349  KLYRPELYPPFSDITLEDCLKTMEVLFVGELEEEIQAHLIMLSKISGIKNIVLSAQSGSS 170
            +LY+P+ YP ++DITLED  + +EV+FV ELE+ IQ HL++LSKI+GIKN+       +S
Sbjct: 1293 ELYKPKNYPTYTDITLEDWEEILEVVFVRELEDTIQNHLLLLSKINGIKNVASGLTQKAS 1352

Query: 169  KDIDEGDTGSKSQQVXXXXXXXXXXXXXXXXXXDLGVDAQKRRRQATDEMDYED 8
             + D+  +G+ SQ                    DLG+DA K++++ATDE DYED
Sbjct: 1353 NETDQDGSGNVSQ---CRGDDDDADDADGEEAEDLGMDAHKQKQRATDEKDYED 1403


>ref|XP_006421454.1| hypothetical protein CICLE_v10004132mg [Citrus clementina]
            gi|557523327|gb|ESR34694.1| hypothetical protein
            CICLE_v10004132mg [Citrus clementina]
          Length = 1715

 Score = 1414 bits (3659), Expect = 0.0
 Identities = 763/1314 (58%), Positives = 935/1314 (71%), Gaps = 64/1314 (4%)
 Frame = -1

Query: 3757 VKKCALQLELIIKGDIVGAKXXXXXXXXXXXXXXXXDRVHVKGLPRQVP--NY-NSKNLK 3587
            V+KC  +LELIIKGDI+ AK                D  +        P  NY N +NLK
Sbjct: 117  VEKCVRKLELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLK 176

Query: 3586 QHSWTSLQYSEAMSLLDELMTGQKTECKRCGAKNPKITCPNFGWFHVN-MPNKYTRANII 3410
               WTSLQ++EA   L + +  + T+C  C AKNP+I+ P FGW H+N MP+   RAN+I
Sbjct: 177  PQEWTSLQFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNGMPHADIRANLI 236

Query: 3409 KGSKLNKLSMGKAKRNSTGEEENANDSSAMGDVDSTDAESSGVVYDGTPDSAQK--VKGG 3236
            +G  L +   G       GEEE   D     DVD+ +  S    + GT D+A +   KG 
Sbjct: 237  RGCNLGETFSG-------GEEEK--DLGTSSDVDAPETHSFNGAFPGTQDTAARRHQKGS 287

Query: 3235 YLYPE-FLKQKEFFSGPLLPSEVKNHMKLLWENETQLCSLICDIQQERLSISGMKGNYSM 3059
               P  F KQK+ FSGPLLPS+VK+ ++ LWENE +LCS I D+QQ+     G K  +S+
Sbjct: 288  GAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGF---GKKAGHSI 344

Query: 3058 FFIEALLVPPIKFRPPSKGGDSVMEHPQTVLLNKVMYSNISLCNEHMNSSERSK-IVPRW 2882
            FF+  +LVPPIKFR PSKGGDSVMEHPQTVLL+KV+ +NI L N ++N  + +K IV RW
Sbjct: 345  FFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARW 404

Query: 2881 FDLQQSINVLFGNSKTAGLRENMATGICQLLEKKEGIFRQKMMGKRVNYACRSVISPDPY 2702
             +LQQS+NVLF     AG R+ +A+GICQLLEKKEG+FRQK+MGKRVNYACRSVISPDPY
Sbjct: 405  MNLQQSVNVLFDGKNAAGQRD-VASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPY 463

Query: 2701 LAVNEIGIPPYFALRLTYPERVTPWNVNKLRDAIINGAEVHPGATHYVDKLATVKLPPNR 2522
            LAVNEIGIPPYFALRLTYPERVTPWNV KLRD+IINGAE+HPGATHY+DKL+T++LPPN+
Sbjct: 464  LAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNK 523

Query: 2521 KIRTSISRKLHSSRGVVAQPGKNLEHELEGKVVYRHLQDGDIVLVNRQPTLHKPSIMAHV 2342
            K+R SI RKL +SRG + QPGK+ ++E EGK+VYRHLQDGD+VLVNRQPTLHKPSIMAHV
Sbjct: 524  KMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHV 583

Query: 2341 VRVLSGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAFNIVNANNQYILPTSGE 2162
            VRVL GEKTLRMHYANCSTYNADFDGDEMNVHFPQDE+SRAEA+NIVNANNQY+ P++G+
Sbjct: 584  VRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGD 643

Query: 2161 PTRGLIQDHIVSAVLLTKKDTFLTWEEYNHLLYSSGVSAAARDFFSSKPGQKVSVINSEA 1982
            P R LIQDHIVSA LLTKKDTFL  +E+  LLYSSGVS++    F+ KPGQ+V +  SE 
Sbjct: 644  PLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQ 703

Query: 1981 EIEPILPAILKPVPMWTGKQVITSLLNHISRTRGFEPLTVEKSGKIKKEYF--------- 1829
            E+ P+LPAI KP P+WTGKQVIT++LNHI  TRG  P  VE+ GK+ +++F         
Sbjct: 704  EVLPLLPAIWKPEPLWTGKQVITAVLNHI--TRGRPPFIVERGGKLPQDFFKTRFNADKQ 761

Query: 1828 -GRKSD--------------------------------------------EANLLIQKNE 1784
             GRK +                                            E  LLI KN+
Sbjct: 762  SGRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKND 821

Query: 1783 LVHGVIDKAQFGEYGLVHTVQEFYGSDTAGILLSVLSRLFTVFLQMHGFTCGVDDLLIVQ 1604
            LV GVIDKAQF +YGLVHTVQE YGS+TAG LLS LSRLFTVFLQMHGFTCGVDDLLI++
Sbjct: 822  LVRGVIDKAQFADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILK 881

Query: 1603 ELDMERMKKLQRSDKIGEEQHAKFIGAKEG-DIDQMELQVEIEKAIRIKGESAITQLDRM 1427
            + + ER   L  S++IG+  H + +  ++G +ID ++L+ EIEKA+R  G++A+   D  
Sbjct: 882  DKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMK 941

Query: 1426 MSSELNDLT-SVVNSELFPKGLLKPFPKNCLSLMTTSGAKGSLVNFTQISSLLGQQQLEG 1250
            M+S+LN  T S V ++L  +GLLKP  KN +SLMTTSGAKGS VNF QISS LGQQ+LEG
Sbjct: 942  MTSQLNKHTSSSVINDLLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEG 1001

Query: 1249 KRVPRMVSGKTLPCFPPWDPASRAGGFITDRFLTGLRPQEYYFHCMAGREGLVDTAVKTS 1070
            KRVPRMVSGKTLP F PWD A RAGGFI DRFLTGLRPQEYYFHCMAGREGLVDTAVKTS
Sbjct: 1002 KRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTS 1061

Query: 1069 RSGYLQRCLVKSLECLKVCYDHTVRDADGSVVQFCYGEDGVDVHKTSFVTKFDTLAANQR 890
            RSGYLQRCL+K+LECLK+ YD++VRDADGS+VQFCYGEDGVDVH+TSF++KFD LAANQ 
Sbjct: 1062 RSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAANQE 1121

Query: 889  VLERLGDHFEDAQMKSDDYIKELPEALEQKTKDFLSNLTKQQRHSLHLRKRKDFXXXXXX 710
            ++ +      DA   S+ YI ELP+AL+   + F       +        ++DF      
Sbjct: 1122 MIYKKCSGQLDA---SNAYIMELPDALKDNAEKFADKFLSNE------MAKQDFLKLVKH 1172

Query: 709  XXXXXLAQPGEPVGVIAAQSVGQPSTQMTLNTFHHAGLGAMNVTLGIPRLQEILMRASET 530
                 LAQPGEPVG++AAQSVG+PSTQMTLNTFH AG G MNVTLGIPRLQEIL  AS+ 
Sbjct: 1173 KFVLSLAQPGEPVGLLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKD 1232

Query: 529  IQTPVMTCPLLMGKTWDDAKRLAATLKKVSVADIVESIEVSVVPFSVKKHQVSSIYKLKM 350
            I+TPV+TCPLL+GKT DDAKRLA  LKK++VADIV+ I V V  F+    Q  ++Y L M
Sbjct: 1233 IKTPVITCPLLVGKTEDDAKRLADKLKKITVADIVKKISVKVRAFTSHDGQACTVYVLTM 1292

Query: 349  KLYRPELYPPFSDITLEDCLKTMEVLFVGELEEEIQAHLIMLSKISGIKNIVLSAQSGSS 170
            +LY+P+ YP ++DITLED  + +EV+FV ELE+ IQ HL++LSKI+GIKN+       +S
Sbjct: 1293 ELYKPKNYPTYTDITLEDWEEILEVVFVRELEDTIQNHLLLLSKINGIKNVASGLTQKAS 1352

Query: 169  KDIDEGDTGSKSQQVXXXXXXXXXXXXXXXXXXDLGVDAQKRRRQATDEMDYED 8
             + D+  +G+ SQ                    DLG+DA K++++ATDE DYED
Sbjct: 1353 NETDQEGSGNVSQ---CRGDDDDADDADGEEAEDLGMDAHKQKQRATDEKDYED 1403


>ref|XP_007028853.1| Nuclear RNA polymerase A1, putative isoform 1 [Theobroma cacao]
            gi|508717458|gb|EOY09355.1| Nuclear RNA polymerase A1,
            putative isoform 1 [Theobroma cacao]
          Length = 1665

 Score = 1411 bits (3653), Expect = 0.0
 Identities = 755/1248 (60%), Positives = 919/1248 (73%), Gaps = 38/1248 (3%)
 Frame = -1

Query: 3757 VKKCALQLELIIKGDIVGAKXXXXXXXXXXXXXXXXDRVHVKGLPRQVPNYNSKNLKQHS 3578
            V++C  QL+LI  GDIVGAK                +     G       +NS+ +K   
Sbjct: 117  VERCVSQLKLIGNGDIVGAKRLDSDSADASSYSDYNEGSQESG----SIVHNSEAVKPKE 172

Query: 3577 WTSLQYSEAMSLLDELMTGQKTECKRCGAKNPKITCPNFGWFHVN-MPNKYTRANIIKGS 3401
            WTSLQ  EAMS+L+  +  +  +CK C AKNP IT P FGW H+N M     R N+I+G 
Sbjct: 173  WTSLQLMEAMSVLNNFLKLKYNKCKNCDAKNPNITKPVFGWLHMNGMLGAQMRENVIRGC 232

Query: 3400 KLNKLSMGKAKRNSTGEEENANDSSAMGDVDSTDAESSGVVYDGTPDSAQKV--KGGYLY 3227
            K+      +A    +G E+  + SS+   VD  + ++S + + G+  +  K   K   + 
Sbjct: 233  KMVDTFSDEA---GSGLEDADDVSSSGNGVDIAEMDTSEIGFTGSEGNGAKARKKKAQVP 289

Query: 3226 PEFLKQKEFFSGPLLPSEVKNHMKLLWENETQLCSLICDIQQERLSISGMKGNYSMFFIE 3047
             EF+KQK  FSGPLLPSEVK   KLLWENE +LCS+I DIQQ+     G K  YSMFF+E
Sbjct: 290  LEFMKQKNLFSGPLLPSEVKKITKLLWENEVELCSIISDIQQQGF---GKKVGYSMFFLE 346

Query: 3046 ALLVPPIKFRPPSKGGDSVMEHPQTVLLNKVMYSNISLCNEHMNSSERSKIVPR-WFDLQ 2870
             +LVPPIKFR P+KGGDSVMEHPQTVLL+KV+ +NISL N + N+ + SK V R W DLQ
Sbjct: 347  TILVPPIKFRAPTKGGDSVMEHPQTVLLSKVLQANISLGNAYTNNLQSSKAVVRLWMDLQ 406

Query: 2869 QSINVLFGNSKTAGLRENMATGICQLLEKKEGIFRQKMMGKRVNYACRSVISPDPYLAVN 2690
            QS+N+LF +        ++++GICQLLEKKEG+FRQKMMGKRVN+ACRSVISPDPYLAVN
Sbjct: 407  QSVNLLFDSKTAMSQGRDVSSGICQLLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAVN 466

Query: 2689 EIGIPPYFALRLTYPERVTPWNVNKLRDAIINGAEVHPGATHYVDKLATVKLPPNRKIRT 2510
            EIGIPPYFALRLTYPERVTPWNV KLR+AIING+E HPGATHYVDKL+T +LPP++K R 
Sbjct: 467  EIGIPPYFALRLTYPERVTPWNVVKLREAIINGSEFHPGATHYVDKLSTKRLPPSQKARI 526

Query: 2509 SISRKLHSSRGVVAQPGKNLEHELEGKVVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVL 2330
            SISRKL SSRG +AQPGKNL++E EGK+V RHLQDGD+VLVNRQPTLHKPSIMAHVVRVL
Sbjct: 527  SISRKLPSSRGAIAQPGKNLDYEFEGKIVLRHLQDGDVVLVNRQPTLHKPSIMAHVVRVL 586

Query: 2329 SGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAFNIVNANNQYILPTSGEPTRG 2150
             GEKT+RMHYANCSTYNADFDGDE+NVHFPQDEISRAEA+NIVNANNQY+ P++GEP R 
Sbjct: 587  KGEKTIRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVRPSNGEPIRA 646

Query: 2149 LIQDHIVSAVLLTKKDTFLTWEEYNHLLYSSGVSAAARDFFSSKPGQKVSVINSEAEIEP 1970
            LIQDHIVSAVLLTK+DTFL+ +E+N LLYSSGVS+ A++ FS KPGQKV V  SE  + P
Sbjct: 647  LIQDHIVSAVLLTKRDTFLSRDEFNQLLYSSGVSSLAQNSFSGKPGQKVFVSTSEEGMLP 706

Query: 1969 ILPAILKPVPMWTGKQVITSLLNHISRTRGFEPLTVEKSGKIKKEYF------------- 1829
            I+PAILKP P+WTGKQVI+S+L+HI  TRG  P TV K+ KI +++F             
Sbjct: 707  IIPAILKPKPLWTGKQVISSVLSHI--TRGRPPFTVGKTAKIPRDFFRNRRNKNKQSSRE 764

Query: 1828 -------GRKS-----------DEANLLIQKNELVHGVIDKAQFGEYGLVHTVQEFYGSD 1703
                   G+K+           DE  +LI +N+LV GVIDKAQF +YGLVHTVQE YGS+
Sbjct: 765  ENQPKNDGQKAKVAEKNSKKEPDEEKILIYRNDLVRGVIDKAQFADYGLVHTVQELYGSN 824

Query: 1702 TAGILLSVLSRLFTVFLQMHGFTCGVDDLLIVQELDMERMKKLQRSDKIGEEQHAKFIGA 1523
            TAGILLSV SRLFTVFLQMHGFTCGVDDLLI+++ D+ER K+L+  +K   E H +  G 
Sbjct: 825  TAGILLSVFSRLFTVFLQMHGFTCGVDDLLIMEDKDIERKKQLEDCEKKVTEAHYELFGV 884

Query: 1522 K-EGDIDQMELQVEIEKAIRIKGESAITQLDRMMSSELNDLTSV-VNSELFPKGLLKPFP 1349
            K   +    ELQ+EIE+ IR  GE+A+T LDR M S LN+ +S  V +EL  +GL+K   
Sbjct: 885  KVNSETAPTELQLEIERTIRRDGETALTALDRKMISVLNENSSKGVLTELLSEGLVKSMG 944

Query: 1348 KNCLSLMTTSGAKGSLVNFTQISSLLGQQQLEGKRVPRMVSGKTLPCFPPWDPASRAGGF 1169
            +NC+SLMTTSGAKGS VNF QISS LGQQ+LEGKRVPRMVSGKTLPCF PWD A+RAGGF
Sbjct: 945  ENCISLMTTSGAKGSKVNFQQISSFLGQQELEGKRVPRMVSGKTLPCFHPWDWAARAGGF 1004

Query: 1168 ITDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKSLECLKVCYDHTVRDA 989
            I+DRFL+GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+K+LECLK+ YDHTVRDA
Sbjct: 1005 ISDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDHTVRDA 1064

Query: 988  DGSVVQFCYGEDGVDVHKTSFVTKFDTLAANQRVL-ERLGDHFEDAQMKSDDYIKELPEA 812
            DGS+VQF YGEDG+DVH+TSF+ KF+ LA NQ ++ E+L     +     DD  K LP+ 
Sbjct: 1065 DGSIVQFIYGEDGIDVHQTSFIAKFEALALNQDMMSEKLCSQLGE----PDDSDKILPDG 1120

Query: 811  LEQKTKDFLSNLTKQQRHSLHLRKRKDFXXXXXXXXXXXLAQPGEPVGVIAAQSVGQPST 632
            L  K + F+    K+ +H     K KDF           LAQPGEPVGV+AAQSVG+PST
Sbjct: 1121 LRSKAEQFIREEIKKYQH--QKIKPKDFLNLLKLKFLSSLAQPGEPVGVLAAQSVGEPST 1178

Query: 631  QMTLNTFHHAGLGAMNVTLGIPRLQEILMRASETIQTPVMTCPLLMGKTWDDAKRLAATL 452
            QMTLNTFH AG G MNVTLGIPRLQEILM AS  I+TPVMTCPL  GKT +DA  LA  +
Sbjct: 1179 QMTLNTFHLAGRGEMNVTLGIPRLQEILMTASIDIRTPVMTCPLHKGKTKEDALCLANKM 1238

Query: 451  KKVSVADIVESIEVSVVPFSVKKHQVSSIYKLKMKLYRPELYPPFSDITLEDCLKTMEVL 272
            KK++VADI+ES+EVSV PF+V    + SIYKLKM L +P+ Y   SDIT++DC   ++V+
Sbjct: 1239 KKITVADILESMEVSVAPFAVDNGDICSIYKLKMMLGKPDKYFENSDITVKDCEHILKVV 1298

Query: 271  FVGELEEEIQAHLIMLSKISGIKNIVLSAQSGSSKDIDEGDTGSKSQQ 128
            F+ ELE+ IQ HL++LSKISGIK  +  +Q  +S ++DE  +  +S++
Sbjct: 1299 FLRELEDAIQNHLVLLSKISGIKKFMPDSQRNASNEMDEDVSEGRSRE 1346


>emb|CAN70028.1| hypothetical protein VITISV_029145 [Vitis vinifera]
          Length = 1350

 Score = 1400 bits (3623), Expect = 0.0
 Identities = 741/1172 (63%), Positives = 867/1172 (73%), Gaps = 81/1172 (6%)
 Frame = -1

Query: 3757 VKKCALQLELIIKGDIVGAKXXXXXXXXXXXXXXXXDRVHVK---GLPRQVPNYNSKNLK 3587
            V+K   QLELI KGD+VGAK                D  HV     +     +  S +LK
Sbjct: 186  VQKYVSQLELISKGDVVGAKNLDSISPSESSYPEDSDGSHVSCSSTVNSSARDNCSVHLK 245

Query: 3586 QHSWTSLQYSEAMSLLDELMTGQKTECKRCGAKNPKITCPNFGWFHV-NMPNKYTRANII 3410
            Q  WTSLQ  EAMS++D  +  +  +CK C AK+P++T P FGWFH+  + +  TRAN+I
Sbjct: 246  QQEWTSLQCIEAMSVMDNFLKLKHRDCKNCKAKSPQVTKPTFGWFHMAGLSDAQTRANVI 305

Query: 3409 KGSKLNKLSMGKAKRNSTGEEENANDSSAMGD-VDSTDAESSGVVYDGTPDSAQKV---K 3242
            +GSKL +     A+  S+ E EN ND    GD VD+ +  SS    DG  D+  K    K
Sbjct: 306  RGSKLERPLSRVAEEKSSSEVENVNDMFPWGDGVDTDETHSSIAPTDGIQDTVTKXLERK 365

Query: 3241 GGYLYPEFLKQKEFFSGPLLPSE----------------------------VKNHMKLLW 3146
            G     EF+KQK FFSGPLLPSE                            V++ M+ LW
Sbjct: 366  GAQAPIEFIKQKSFFSGPLLPSEVCFLXALEHHHQLPWLMSVVVVNYVVTKVRDIMERLW 425

Query: 3145 ENETQLCSLICDIQQERLSISGMKGNYSMFFIEALLVPPIKFRPPSKGGDSVMEHPQTVL 2966
            ENE +LCS I DI QERL  SG K  YSMFF+E +LVPPIKFRPPSKG  SVMEHPQTVL
Sbjct: 426  ENEAELCSFISDILQERLGASGNKAGYSMFFLETILVPPIKFRPPSKGQISVMEHPQTVL 485

Query: 2965 LNKVMYSNISLCNEHMNSSERSKIVPRWFDLQQSINVLFGNSKTAGL-RENMATGICQLL 2789
            L KV+ +NI+L N H N+SERSKI+ RW DLQQSINVLF     AG  + +  +GICQLL
Sbjct: 486  LGKVLQANIALGNAHANNSERSKIISRWMDLQQSINVLFDGKTAAGQGQRDTGSGICQLL 545

Query: 2788 EKKEGIFRQKMMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVNKLR 2609
            EKKEG+FRQKMMGKRVN+ACRSVISPDPYLAVNEIGIPPYFALRLTYPE+VTPWNV KLR
Sbjct: 546  EKKEGVFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVTPWNVVKLR 605

Query: 2608 DAIINGAEVHPGATHYVDKLATVKLPPNRKIRTSISRKLHSSRGVVAQPGKNLEHELEGK 2429
            DAIING E+HPGATHYVDKL+TVKL  N+K+R SISRKL SSRGVVAQPG++ ++E EGK
Sbjct: 606  DAIINGPEIHPGATHYVDKLSTVKLAVNKKMRISISRKLPSSRGVVAQPGRSSDNEFEGK 665

Query: 2428 VVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLSGEKTLRMHYANC-------------- 2291
            +VYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVL GEKTLRMHYANC              
Sbjct: 666  IVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCRVESEHISMLDLDD 725

Query: 2290 ----STYNADFDGDEMNVHFPQDEISRAEAFNIVNANNQYILPTSGEPTRGLIQDHIVSA 2123
                STYNADFDGDEMNVHFPQDEISRAEA+NIVNANNQYI+P+ G+P RGLIQDHIVSA
Sbjct: 726  CSDSSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYIVPSRGDPIRGLIQDHIVSA 785

Query: 2122 VLLTKKDTFLTWEEYNHLLYSSGVSAAARDFFSSKPGQKVSVINSEAEIEPILPAILKPV 1943
            VLLTKKDTFLT E+YN LLYSSG+S+ +  F   KPG+KVSV++SE E++P+LPAI KP 
Sbjct: 786  VLLTKKDTFLTREQYNQLLYSSGLSSGSGSFI-GKPGKKVSVLDSEDEMQPLLPAIWKPE 844

Query: 1942 PMWTGKQVITSLLNHISRTRGFEPLTVEKSGKIKKEYFG--------------------- 1826
            P+W+GKQVIT++LNHI  TRG +P T EK GKI +EYFG                     
Sbjct: 845  PLWSGKQVITAVLNHI--TRGRKPFTTEKDGKIPREYFGSEIDEKKSGKGKDPGSDRRKE 902

Query: 1825 ----RKSDEANLLIQKNELVHGVIDKAQFGEYGLVHTVQEFYGSDTAGILLSVLSRLFTV 1658
                +K  E  LLI KNELV GVIDKAQF +YGLVH VQE YGS+TAGILLSVLSRLFTV
Sbjct: 903  KRIEKKHGEYKLLIHKNELVRGVIDKAQFDKYGLVHMVQELYGSNTAGILLSVLSRLFTV 962

Query: 1657 FLQMHGFTCGVDDLLIVQELDMERMKKLQRSDKIGEEQHAKFIGAKEGDIDQMELQVEIE 1478
            FLQMHGFTCGVDDLLI    D+ R  +L +S+ IGE  H KFIG+  G ID ++LQVE+E
Sbjct: 963  FLQMHGFTCGVDDLLISPNYDIARKIELDKSENIGELVHCKFIGSNHGKIDPVKLQVEVE 1022

Query: 1477 KAIRIKGESAITQLDRMMSSELNDLTSVVNSELFPKGLLKPFPKNCLSLMTTSGAKGSLV 1298
            K I   GE+AIT+LDRMM +ELN+LTS VN +L  KGL+KPFPKNCLSLMTT+GAKGS V
Sbjct: 1023 KIILSNGEAAITRLDRMMKNELNELTSKVNKDLLLKGLVKPFPKNCLSLMTTTGAKGSTV 1082

Query: 1297 NFTQISSLLGQQQLEGKRVPRMVSGKTLPCFPPWDPASRAGGFITDRFLTGLRPQEYYFH 1118
            NF+QISS LGQQ LEGKRVPRMVSGKTLPCFPPWD A+RAGGFI+DRFLTGL PQEYYFH
Sbjct: 1083 NFSQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDCAARAGGFISDRFLTGLHPQEYYFH 1142

Query: 1117 CMAGREGLVDTAVKTSRSGYLQRCLVKSLECLKVCYDHTVRDADGSVVQFCYGEDGVDVH 938
            CMAGREGLVDTAVKTSRSGYLQRCL+K+LECLKVCYD+TVRD+DGS+VQF YG+DGVDVH
Sbjct: 1143 CMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDYTVRDSDGSIVQFNYGDDGVDVH 1202

Query: 937  KTSFVTKFDTLAANQRVL-ERLGDHFEDAQMKSDDYIKELPEALEQKTKDFLSNLTKQQR 761
            +TSF+T+F+ LA NQ V+ E+ G        K + YI++LP+ L +KTK F+    ++++
Sbjct: 1203 QTSFITEFEALAVNQEVVCEKFGQ-----DGKFNGYIQKLPKELRKKTKKFIEGFMEERQ 1257

Query: 760  HSLHLRKRKDFXXXXXXXXXXXLAQPGEPVGVIAAQSVGQPSTQMTLNTFHHAGLGAMNV 581
               +++K+KDF           LAQPGEPVGV+AAQSVG+PSTQMTLNTFH AG G +NV
Sbjct: 1258 DFDNMKKQKDFVNLVKQKYISSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEVNV 1317

Query: 580  TLGIPRLQEILMRASETIQTPVMTCPLLMGKT 485
            TLGIPRLQEILM A+  I+TP+MTCPL MG++
Sbjct: 1318 TLGIPRLQEILMTAANDIKTPIMTCPLQMGRS 1349


>ref|XP_004165748.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
            RPA1-like [Cucumis sativus]
          Length = 1652

 Score = 1397 bits (3616), Expect = 0.0
 Identities = 766/1277 (59%), Positives = 915/1277 (71%), Gaps = 27/1277 (2%)
 Frame = -1

Query: 3757 VKKCALQLELIIKGDIVGAKXXXXXXXXXXXXXXXXDRVHVKGLPRQVPNYNSKNLKQHS 3578
            V+ C   LELI+ G+I  AK                  ++          Y  KN +  +
Sbjct: 123  VENCKTLLELILDGEIAKAKELEEEWMNSKSRTKSSHSMYT---------YERKNGQPET 173

Query: 3577 WTSLQYSEAMSLLDELMTGQKTECKRCGAKNPKITCPNFGWFHVN-MPNKYTRANIIKGS 3401
            WTSLQ+SEA+S++ + +  +++ CK CGAK+PKIT P FGWFH+  +     RAN I+ S
Sbjct: 174  WTSLQFSEAISVVTKFLKPKQSNCKYCGAKSPKITKPTFGWFHMKGLAGVQKRANAIRRS 233

Query: 3400 KLNKLSMGKAKRNSTGEEENANDSSAMGDVDSTDAESSGVVYDGTPDSAQKVKGGYLYPE 3221
            K   +S G A+  S+ EEE   +++     D +                         PE
Sbjct: 234  KPVSVSSG-AEGVSSLEEETTTEATVEDFEDVS-------------------------PE 267

Query: 3220 FLKQKEFFSGPLLPSEVKNHMKLLWENETQLCSLICDIQQERLSISGMKGNYSMFFIEAL 3041
               QK F SG LLPSEVK+ +K LW+NE  LCS I DI Q+     G K  +SMFF+E++
Sbjct: 268  VFMQKNFSSGHLLPSEVKDILKRLWKNEALLCSFISDISQQG---HGNKAGHSMFFLESV 324

Query: 3040 LVPPIKFRPPSKGGDSVMEHPQTVLLNKVMYSNISLCNEHMNSSERSKIVPRWFDLQQSI 2861
            LVPPIKFRPP+KGGDSVMEHPQTVLLNKV+ SNISL N H N SE SKIV  W DLQQSI
Sbjct: 325  LVPPIKFRPPAKGGDSVMEHPQTVLLNKVLQSNISLGNGHANKSEHSKIVRLWMDLQQSI 384

Query: 2860 NVLFGNSKTAGLRENMAT-GICQLLEKKEGIFRQKMMGKRVNYACRSVISPDPYLAVNEI 2684
            N+LF +   AG  +N A+ GICQLLEKKEG+FRQKMMGKRVN+ACRSVISPDPYLAVNEI
Sbjct: 385  NILFDSKSAAGPGKNDASLGICQLLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAVNEI 444

Query: 2683 GIPPYFALRLTYPERVTPWNVNKLRDAIINGAEVHPGATHYVDKLATVKL--PPNRKIRT 2510
            GIPPYFALRLTYPERVT WNV KLR+AIING E HPGATHY+DKLATVKL   P+RK R 
Sbjct: 445  GIPPYFALRLTYPERVTAWNVQKLRNAIINGPETHPGATHYIDKLATVKLNLKPSRKSRI 504

Query: 2509 SISRKLHSSRGVVAQPGKNLEHELEGKVVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVL 2330
            SISRKL SSRGVV   G + ++E EGK+V RHLQDGDIVLVNRQPTLHKPSIMAHVVRVL
Sbjct: 505  SISRKLPSSRGVVVDQGCD-DYEFEGKIVNRHLQDGDIVLVNRQPTLHKPSIMAHVVRVL 563

Query: 2329 SGEKTLRMHYANCS-TYNADFDGDEMNVHFPQDEISRAEAFNIVNANNQYILPTSGEPTR 2153
             GEKT+RMHYANCS TYNADFDGDEMNVHFPQDEISRAEA+NIVNANNQY+ PTSGEP R
Sbjct: 564  KGEKTIRMHYANCSITYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVKPTSGEPIR 623

Query: 2152 GLIQDHIVSAVLLTKKDTFLTWEEYNHLLYSSGVSAAARDFFSSKPGQKVSVINSEAEIE 1973
             LIQDHI+SAVLLTKKDTFL ++E++ LLYSSG+S +     S KPGQK+  ++ +AE+ 
Sbjct: 624  ALIQDHIISAVLLTKKDTFLNFDEFSQLLYSSGISTSKACASSEKPGQKIFTLDFDAEML 683

Query: 1972 PILPAILKPVPMWTGKQVITSLLNHISRTRGFEPLTVEKSGKI-------------KKEY 1832
            P+LPA+ KP P+WTGKQV+T+LL+HI  T+G  P  VEK  KI             KKE+
Sbjct: 684  PVLPAVWKPEPLWTGKQVVTALLDHI--TQGSPPFFVEKDVKIPRGFLILDEGNSKKKEH 741

Query: 1831 F------GRKSDEANLLIQKNELVHGVIDKAQFGEYGLVHTVQEFYGSDTAGILLSVLSR 1670
                     + D+ +LLI KNELV GVIDKAQFG+YGLVHTVQE YGS+TAG+LLSV+SR
Sbjct: 742  TKVDKLKAARLDDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQELYGSNTAGLLLSVMSR 801

Query: 1669 LFTVFLQMHGFTCGVDDLLIVQELDMERMKKLQRSDKIGEEQHAKFIGAKEGD-IDQMEL 1493
            LFTVFLQ HGFTCGVDDLL+++ +D ER K+LQ  +KIGE+ H  F+  K+G+ +D M L
Sbjct: 802  LFTVFLQTHGFTCGVDDLLLIECMDKEREKQLQICEKIGEQVHLGFLKVKDGEKLDPMTL 861

Query: 1492 QVEIEKAIRIKGESAITQLDRMMSSELNDLT--SVVNSELFPKGLLKPFPKNCLSLMTTS 1319
            Q+ IEK I   GE+A+T LDR M+S+LN+ T  S V  +L  +GLLKP  KNC+SLMTTS
Sbjct: 862  QLNIEKTISYNGEAALTSLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSVKNCISLMTTS 921

Query: 1318 GAKGSLVNFTQISSLLGQQQLEGKRVPRMVSGKTLPCFPPWDPASRAGGFITDRFLTGLR 1139
            GAKG   NF QISS LGQQQLEGKRVPRMVSGKTLPCFPPWD ASRAGGFI DRFLTGLR
Sbjct: 922  GAKGGTANFQQISSHLGQQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRFLTGLR 981

Query: 1138 PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKSLECLKVCYDHTVRDADGSVVQFCYG 959
            PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+K+LE LK+CYDHTVRDADGSV+QF YG
Sbjct: 982  PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKICYDHTVRDADGSVIQFQYG 1041

Query: 958  EDGVDVHKTSFVTKFDTLAANQRVLERLGDHFEDAQMKSDDYIKELPEALEQKTKDFLSN 779
            EDGVDVHKT+F+TKF+ LAANQ +L     H      K + +I ELP AL +K +   ++
Sbjct: 1042 EDGVDVHKTAFITKFEALAANQDMLYENSHH---QLGKYNVFINELPSALREKGEFIYNS 1098

Query: 778  LTKQQRHSLHLRKRKDFXXXXXXXXXXXLAQPGEPVGVIAAQSVGQPSTQMTLNTFHHAG 599
            L+K +   L L  ++DF           LAQPGEPVGV+AAQS+G+PSTQMTLNTFHHAG
Sbjct: 1099 LSKDKVPGLVL--KEDFIRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAG 1156

Query: 598  LGAMNVTLGIPRLQEILMRASETIQTPVMTCPLLMGKTWDDAKRLAATLKKVSVADIVES 419
             G MNVTLGIPRLQEILM AS+ I+TP+MTCPL  G + D AK LA  LKK++VADI+ES
Sbjct: 1157 RGEMNVTLGIPRLQEILMTASQDIKTPIMTCPLKEGYSMDVAKGLANKLKKITVADIIES 1216

Query: 418  IEVSVVPFSVKKHQVSSIYKLKMKLYRPELYPPFSDITLEDCLKTMEVLFVGELEEEIQA 239
            + V+VVPFS +K ++ SIYKL++  Y  E       I+ ED   T+E +F+ ELE  I+ 
Sbjct: 1217 MNVTVVPFSQRKREICSIYKLRIDFYPLENNAQHGHISPEDLENTLETVFLEELEGLIER 1276

Query: 238  HLIMLSKISGIKNIVLSAQSGSSKDIDEGDTGSKSQQVXXXXXXXXXXXXXXXXXXDLGV 59
             +++LSKI+GIK  V  +Q   SK   EGD  S S+Q                   DLG 
Sbjct: 1277 EMVLLSKINGIKXFVPDSQ---SKGSSEGDEVSSSRQ---EEMDDDDEGNDLDVAEDLGS 1330

Query: 58   DAQKRRRQATDEMDYED 8
            D +K++ QA DEMDYED
Sbjct: 1331 DXEKQKLQANDEMDYED 1347


>ref|XP_004136744.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Cucumis
            sativus]
          Length = 1650

 Score = 1394 bits (3609), Expect = 0.0
 Identities = 763/1280 (59%), Positives = 913/1280 (71%), Gaps = 30/1280 (2%)
 Frame = -1

Query: 3757 VKKCALQLELIIKGDIVGAKXXXXXXXXXXXXXXXXDRVHVKGLPRQVPNYNSKNLKQHS 3578
            V+ C   LELI+ G+I  AK                  ++          Y  KN +  +
Sbjct: 117  VENCKTLLELILDGEIAKAKELEEEWMNSKSRTKSSHSMYT---------YERKNGQPET 167

Query: 3577 WTSLQYSEAMSLLDELMTGQKTECKRCGAKNPKITCPNFGWFHVN-MPNKYTRANIIKGS 3401
            WTSLQ+SEA+S++ + +  +++ CK CGAK+PKIT P FGWFH+  +     RAN I+ S
Sbjct: 168  WTSLQFSEAISVVTKFLKPKQSNCKYCGAKSPKITKPTFGWFHMKGLAGVQKRANAIRRS 227

Query: 3400 KLNKLSMGKAKRNSTGEEENANDSSAMGDVDSTDAESSGVVYDGTPDSAQKVKGGYLYPE 3221
            K   +S G A+  S+ EEE   +++     D +                         PE
Sbjct: 228  KPVSVSSG-AEGVSSLEEETTTEATVEDFEDVS-------------------------PE 261

Query: 3220 FLKQKEFFSGPLLPSEVKNHMKLLWENETQLCSLICDIQQERLSISGMKGNYSMFFIEAL 3041
               QK F SG LLPSEVK+ +K LW+NE  LCS I DI Q+     G K  +SMFF+E++
Sbjct: 262  VFMQKNFSSGHLLPSEVKDILKRLWKNEALLCSFISDISQQG---HGNKAGHSMFFLESV 318

Query: 3040 LVPPIKFRPPSKGGDSVMEHPQTVLLNKVMYSNISLCNEHMNSSERSKIVPRWFDLQQSI 2861
            LVPPIKFRPP+KGGDSVMEHPQTVLLNKV+ SNISL N H N SE SKIV  W DLQQSI
Sbjct: 319  LVPPIKFRPPAKGGDSVMEHPQTVLLNKVLQSNISLGNGHANKSEHSKIVRLWMDLQQSI 378

Query: 2860 NVLFGNSKTAGLRENMAT-GICQLLEKKEGIFRQKMMGKRVNYACRSVISPDPYLAVNEI 2684
            N+LF +   AG  +N A+ GICQLLEKKEG+FRQKMMGKRVN+ACRSVISPDPYLAVNEI
Sbjct: 379  NILFDSKSAAGPGKNDASLGICQLLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAVNEI 438

Query: 2683 GIPPYFALRLTYPERVTPWNVNKLRDAIINGAEVHPGATHYVDKLATVKL--PPNRKIRT 2510
            GIPPYFALRLTYPERVT WNV KLR+AIING E HPGATHY+DKLATVKL   P+RK R 
Sbjct: 439  GIPPYFALRLTYPERVTAWNVQKLRNAIINGPETHPGATHYIDKLATVKLNLKPSRKSRI 498

Query: 2509 SISRKLHSSRGVVAQPGKNLEHELEGKVVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVL 2330
            SISRKL SSRGVV   G + ++E EGK+V RHLQDGDIVLVNRQPTLHKPSIMAHVVRVL
Sbjct: 499  SISRKLPSSRGVVVDQGCD-DYEFEGKIVNRHLQDGDIVLVNRQPTLHKPSIMAHVVRVL 557

Query: 2329 SGEKTLRMHYANCS-TYNADFDGDEMNVHFPQDEISRAEAFNIVNANNQYILPTSGEPTR 2153
             GEKT+RMHYANCS TYNADFDGDEMNVHFPQDEISRAEA+NIVNANNQY+ PTSGEP R
Sbjct: 558  KGEKTIRMHYANCSITYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVKPTSGEPIR 617

Query: 2152 GLIQDHIVSAVLLTKKDTFLTWEEYNHLLYSSGVSAAARDFFSSKPGQKVSVINSEAEIE 1973
             LIQDHI+SAVLLTKKDTFL ++E++ LLYSSG+S +     S KPGQK+  ++ +AE+ 
Sbjct: 618  ALIQDHIISAVLLTKKDTFLNFDEFSQLLYSSGISTSKACASSEKPGQKIFTLDFDAEML 677

Query: 1972 PILPAILKPVPMWTGKQVITSLLNHISRTRGFEPLTVEKSGKIKKEYF------------ 1829
            P+LPA+ KP P+WTGKQV+T+LL+HI  T+G  P  VEK  KI + +F            
Sbjct: 678  PVLPAVWKPEPLWTGKQVVTALLDHI--TQGSPPFFVEKDVKIPRGFFKCRDMGNNSSKK 735

Query: 1828 ----------GRKSDEANLLIQKNELVHGVIDKAQFGEYGLVHTVQEFYGSDTAGILLSV 1679
                        + D+ +LLI KNELV GVIDKAQFG+YGLVHTVQE YGS+TAG+LLSV
Sbjct: 736  KEHTKVDKLKAARLDDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQELYGSNTAGLLLSV 795

Query: 1678 LSRLFTVFLQMHGFTCGVDDLLIVQELDMERMKKLQRSDKIGEEQHAKFIGAKEGD-IDQ 1502
            +SRLFTVFLQ HGFTCGVDDLL+++ +D ER K+LQ  +KIGE+ H  F+  K+G+ +D 
Sbjct: 796  MSRLFTVFLQTHGFTCGVDDLLLIECMDKEREKQLQICEKIGEQVHLGFLKVKDGEKLDP 855

Query: 1501 MELQVEIEKAIRIKGESAITQLDRMMSSELNDLT--SVVNSELFPKGLLKPFPKNCLSLM 1328
            M LQ+ IEK I   GE+A+T LDR M+S+LN+ T  S V  +L  +GLLKP  KNC+SLM
Sbjct: 856  MTLQLNIEKTISYNGEAALTSLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSVKNCISLM 915

Query: 1327 TTSGAKGSLVNFTQISSLLGQQQLEGKRVPRMVSGKTLPCFPPWDPASRAGGFITDRFLT 1148
            TTSGAKG   NF QISS LGQQQLEGKRVPRMVSGKTLPCFPPWD ASRAGGFI DRFLT
Sbjct: 916  TTSGAKGGTANFQQISSHLGQQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRFLT 975

Query: 1147 GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKSLECLKVCYDHTVRDADGSVVQF 968
            GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+K+LE LK+CYDHTVRDADGSV+QF
Sbjct: 976  GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKICYDHTVRDADGSVIQF 1035

Query: 967  CYGEDGVDVHKTSFVTKFDTLAANQRVLERLGDHFEDAQMKSDDYIKELPEALEQKTKDF 788
             YGEDGVDVHKT+F+TKF+ LAANQ +L     H      K + +I ELP AL +K +  
Sbjct: 1036 QYGEDGVDVHKTAFITKFEALAANQDMLYENSHH---QLGKYNVFINELPSALREKGEFI 1092

Query: 787  LSNLTKQQRHSLHLRKRKDFXXXXXXXXXXXLAQPGEPVGVIAAQSVGQPSTQMTLNTFH 608
             ++L+K +   L L  ++DF           LAQPGEPVGV+AAQS+G+PSTQMTLNTFH
Sbjct: 1093 YNSLSKDKVPGLVL--KEDFIRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFH 1150

Query: 607  HAGLGAMNVTLGIPRLQEILMRASETIQTPVMTCPLLMGKTWDDAKRLAATLKKVSVADI 428
            H G G MNVTLGI RLQEILM AS+ I+TP+MTCPL  G + D AK LA  LKK++VADI
Sbjct: 1151 HVGRGEMNVTLGILRLQEILMTASQDIKTPIMTCPLKEGYSMDVAKGLANKLKKITVADI 1210

Query: 427  VESIEVSVVPFSVKKHQVSSIYKLKMKLYRPELYPPFSDITLEDCLKTMEVLFVGELEEE 248
            +ES+ V+VVPFS +K ++ SIYKL++  Y  E       I+ ED   T+E +F+ ELE  
Sbjct: 1211 IESMNVTVVPFSQRKREICSIYKLRIDFYPLENNAQHGHISPEDLENTLETVFLEELEGL 1270

Query: 247  IQAHLIMLSKISGIKNIVLSAQSGSSKDIDEGDTGSKSQQVXXXXXXXXXXXXXXXXXXD 68
            I+  +++LSKI+GIKN V  +Q   SK   EGD  S S+Q                   D
Sbjct: 1271 IEREMVLLSKINGIKNFVPDSQ---SKGSSEGDEVSSSRQ--KENDDDDDEGNDLDVAED 1325

Query: 67   LGVDAQKRRRQATDEMDYED 8
            LG D +K++ QA DEMDYED
Sbjct: 1326 LGSDMKKQKLQANDEMDYED 1345


>ref|XP_006588921.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Glycine
            max]
          Length = 1651

 Score = 1391 bits (3601), Expect = 0.0
 Identities = 750/1268 (59%), Positives = 906/1268 (71%), Gaps = 24/1268 (1%)
 Frame = -1

Query: 3739 QLELIIKGDIVGAKXXXXXXXXXXXXXXXXDRVHVKGLPRQVPNYNSKNLKQHSWTSLQY 3560
            QLELI+KGDI+ AK                D     G   +   Y+++ L ++ WTSLQ+
Sbjct: 123  QLELIMKGDIIRAKRLESIIPGKSVDSFNPDESIHPGDGDESQCYSAEQLGEN-WTSLQF 181

Query: 3559 SEAMSLLDELMTGQKTECKRCGAKNPKITCPNFGWFHVNMPNK-YTRANIIKGSKLNKLS 3383
            SEAMS+L +L+T +  +C++CGAKNPKI+ P FGWFH+N+ +   TRA+ I+        
Sbjct: 182  SEAMSVLRKLLTKKHKKCQKCGAKNPKISKPTFGWFHMNVLSADETRADTIRSV------ 235

Query: 3382 MGKAKRNSTGEEENANDSSAMGDVDSTDAESSGVVYDGTPDSAQKVKGGYLYPEFLKQKE 3203
                      E E  ND  ++G  D+TD E          D  +K K  Y     L ++ 
Sbjct: 236  ----------ESETTNDDISLGGGDTTDVEDITSAGTAKRDKRKKEKLSYK----LAEQN 281

Query: 3202 FFSGPLLPSEVKNHMKLLWENETQLCSLICDIQQERLSISGMKGNYSMFFIEALLVPPIK 3023
              SG LLPS+VK  ++LLWENE +LCS I DIQ +     G K  +SMFF+E + VPPIK
Sbjct: 282  KLSGSLLPSQVKGILELLWENEARLCSYINDIQDQGF---GKKAGHSMFFLENIFVPPIK 338

Query: 3022 FRPPSKGGDSVMEHPQTVLLNKVMYSNISLCNEHMNSSERSKIVPRWFDLQQSINVLFGN 2843
            FRPP+KGGD+VMEHPQTVLL KV+  NISL + H+N S+ SK++ RW DLQQS+N+LF N
Sbjct: 339  FRPPTKGGDNVMEHPQTVLLTKVLQCNISLGDAHLNKSDPSKVLSRWMDLQQSVNMLFDN 398

Query: 2842 SKTAGLRENMATGICQLLEKKEGIFRQKMMGKRVNYACRSVISPDPYLAVNEIGIPPYFA 2663
             KTA  + ++ATGICQLLEKKEGIFRQKMMGKRVN+ACRSVISPDPYLAVNEIGIPPYFA
Sbjct: 399  -KTASGKRDVATGICQLLEKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFA 457

Query: 2662 LRLTYPERVTPWNVNKLRDAIINGAEVHPGATHYVDKLATVKLPPNRKIRTSISRKLHSS 2483
            LRL+YPERVTPWNV KLR+AI+NG E HPGATHY DK++ VKLPP  K+ +  SRKL +S
Sbjct: 458  LRLSYPERVTPWNVVKLRNAILNGPESHPGATHYADKVSIVKLPPKGKLLSLTSRKLPTS 517

Query: 2482 RGVVAQPGKNLEHELEGKVVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLSGEKTLRMH 2303
            RGV+   GK  +HE EGKVVYRHL+DGD+VLVNRQPTLHKPSIMAH+VRVL GEKT+RMH
Sbjct: 518  RGVILHQGKISDHEFEGKVVYRHLKDGDVVLVNRQPTLHKPSIMAHIVRVLKGEKTVRMH 577

Query: 2302 YANCSTYNADFDGDEMNVHFPQDEISRAEAFNIVNANNQYILPTSGEPTRGLIQDHIVSA 2123
            YANCSTYNADFDGDE+NVHFPQDEISRAEA+NIVNANNQY+ PTSG+P R LIQDHIVSA
Sbjct: 578  YANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVKPTSGDPIRALIQDHIVSA 637

Query: 2122 VLLTKKDTFLTWEEYNHLLYSSGVSAAARDFFSSKPGQKVSVINSEAEIEPILPAILKPV 1943
             LLTKKDTFL++EE+N LLYSSGVS A    F  K GQKV + NSE+E+    PAI KP 
Sbjct: 638  ALLTKKDTFLSYEEFNQLLYSSGVSMAGLGSFYGKHGQKVFISNSESEMFLFPPAIWKPE 697

Query: 1942 PMWTGKQVITSLLNHISRTRGFEPLTVEKSGKIKKEYFGR-----------------KSD 1814
            P+WTGKQVI++LL +I  TRG  P T EK+ KI   +F                   K D
Sbjct: 698  PLWTGKQVISALLYYI--TRGSPPFTAEKNAKIPSNFFKTQIRKGKRYTEDTSKKKDKPD 755

Query: 1813 EANLLIQKNELVHGVIDKAQFGEYGLVHTVQEFYGSDTAGILLSVLSRLFTVFLQMHGFT 1634
            E  LLI KN+LV GV+DKAQFG+YG++HTVQE YGS+ AG LLS LSRLFT FLQMHGFT
Sbjct: 756  EDKLLIYKNDLVRGVVDKAQFGDYGMIHTVQELYGSNVAGNLLSALSRLFTTFLQMHGFT 815

Query: 1633 CGVDDLLIVQELDMERMKKLQRSDKIGEEQHAKFIGAKEGD-IDQMELQVEIEKAIRIKG 1457
            CGVDDL++ +  D+ERM +L+  + IG+  H +FIG K  D ID + LQ+ IEK IR  G
Sbjct: 816  CGVDDLMLTEGKDVERMNQLKSCEIIGDSVHREFIGVKNSDNIDPVTLQLNIEKKIRSNG 875

Query: 1456 ESAITQLDRMMSSELNDLTSV-VNSELFPKGLLKPFPKNCLSLMTTSGAKGSLVNFTQIS 1280
            E+A+T LDR M+S LN  TS  +  +L  +G+LKP  KNC+SLMTTSGAKGS+VNF QIS
Sbjct: 876  EAALT-LDRKMTSNLNSRTSSGILKKLLSEGILKPSGKNCISLMTTSGAKGSMVNFQQIS 934

Query: 1279 SLLGQQQLEGKRVPRMVSGKTLPCFPPWDPASRAGGFITDRFLTGLRPQEYYFHCMAGRE 1100
            S LGQQ+LEGKRVPRMVSGKTLPCFPPWD + RAGGFI DRFLT L PQEYYFHCMAGRE
Sbjct: 935  SHLGQQELEGKRVPRMVSGKTLPCFPPWDCSPRAGGFIIDRFLTALHPQEYYFHCMAGRE 994

Query: 1099 GLVDTAVKTSRSGYLQRCLVKSLECLKVCYDHTVRDADGSVVQFCYGEDGVDVHKTSFVT 920
            GLVDTAVKTSRSGYLQRCL+K+LECLKVCYDHTVRDADGS++QF YGEDGVDVH+TSF+T
Sbjct: 995  GLVDTAVKTSRSGYLQRCLMKNLECLKVCYDHTVRDADGSIIQFHYGEDGVDVHQTSFIT 1054

Query: 919  KFDTLAANQRVLERLGDHFEDAQMKSDDYIKELPEALEQKTKDFLSNLTKQQRHSLHLRK 740
            +F  L+ N+   E +  ++     +S  YI +LPEALE K + F       ++ +L   +
Sbjct: 1055 EFGALSTNK---ELVFSNYCRQLDRSSPYINKLPEALEGKAEKF------SKQRNLGSME 1105

Query: 739  RKDFXXXXXXXXXXXLAQPGEPVGVIAAQSVGQPSTQMTLNTFHHAGLGAMNVTLGIPRL 560
            + DF           LAQPGEPVGV+A+QSVG+P+TQMTLNTFH AG G MNVTLGIPRL
Sbjct: 1106 QADFLRLMEHKYVSCLAQPGEPVGVLASQSVGEPATQMTLNTFHLAGRGEMNVTLGIPRL 1165

Query: 559  QEILMRASETIQTPVMTCPLLMGKTWDDAKRLAATLKKVSVADIVESIEVSVVPFSVKKH 380
            QEILM A+  I+TP MTCPL   K+  DA  LA  LKK++VADI++S++VSVVP +V   
Sbjct: 1166 QEILMAAARDIKTPFMTCPLRHDKSMKDAICLADKLKKITVADIIKSMKVSVVPVTVLGG 1225

Query: 379  QVSSIYKLKMKLYRPELYPPFSDITLEDCLKTMEVLFVGELEEEIQAHLIMLSKISGIKN 200
            QV SIYKL MKLY+ + YP ++DITL+D  +T+ V FV ELE+ IQ H+ +LSKISGIK 
Sbjct: 1226 QVCSIYKLVMKLYKSKQYPEYTDITLDDWEETLRVNFVRELEDAIQNHMTLLSKISGIKK 1285

Query: 199  IVLSAQSGSSKDIDE----GDTGSKSQQVXXXXXXXXXXXXXXXXXXDLGVDAQKRRRQA 32
                 QS  S   ++    G    K  Q                   DLG DAQKR+ Q 
Sbjct: 1286 FKTDPQSNYSNSSEDAHSNGSESEKKGQNNDDDDEDGGGVEDTEGYEDLGSDAQKRKLQG 1345

Query: 31   TDEMDYED 8
            TDE+DYED
Sbjct: 1346 TDEVDYED 1353


>ref|XP_007145632.1| hypothetical protein PHAVU_007G255400g [Phaseolus vulgaris]
            gi|561018822|gb|ESW17626.1| hypothetical protein
            PHAVU_007G255400g [Phaseolus vulgaris]
          Length = 1637

 Score = 1366 bits (3535), Expect = 0.0
 Identities = 742/1269 (58%), Positives = 899/1269 (70%), Gaps = 25/1269 (1%)
 Frame = -1

Query: 3739 QLELIIKGDIVGAKXXXXXXXXXXXXXXXXDRVHVKGLPRQVPNYNSKNLKQ--HSWTSL 3566
            Q ELI+KGDI+ AK                D               S+ ++Q   +W+SL
Sbjct: 123  QFELIMKGDIIRAKSLDSIISDESNHSGDGDE--------------SQGVEQLGENWSSL 168

Query: 3565 QYSEAMSLLDELMTGQKTECKRCGAKNPKITCPNFGWFHVN-MPNKYTRANIIKGSKLNK 3389
            Q+SEAMS+L + +  +  +C+ CG  NP+I+ P FGWFH+N + +   RAN ++      
Sbjct: 169  QFSEAMSVLRKFLLRKYKKCQNCGVVNPRISKPTFGWFHMNVLSDDEARANTMRAL---- 224

Query: 3388 LSMGKAKRNSTGEEENANDSSAMGDVDSTDAESSGVVYDGTPDSAQKVKGGYLYPEFLKQ 3209
                        E E  ND  ++G  ++T+ E   +   GT     K K G L  +   Q
Sbjct: 225  ------------ESETINDDMSLGGGETTEEED--ITSTGTA-KRDKRKKGKLSSKLAAQ 269

Query: 3208 KEFFSGPLLPSEVKNHMKLLWENETQLCSLICDIQQERLSISGMKGNYSMFFIEALLVPP 3029
             +  SG LLPS+VK  ++LLWENE +LCS I DIQ +     G K  +SMFF+E + VPP
Sbjct: 270  NKL-SGSLLPSQVKGILELLWENEARLCSYISDIQDQGF---GKKAGHSMFFLENIFVPP 325

Query: 3028 IKFRPPSKGGDSVMEHPQTVLLNKVMYSNISLCNEHMNSSERSKIVPRWFDLQQSINVLF 2849
            IKFRPP+KGGD VMEHPQTVLL KV+  NISL + H+N  + SK++ RW DLQQS+N+LF
Sbjct: 326  IKFRPPTKGGDDVMEHPQTVLLTKVLQGNISLGDAHINKLDPSKVLSRWMDLQQSVNLLF 385

Query: 2848 GNSKTAGLRENMATGICQLLEKKEGIFRQKMMGKRVNYACRSVISPDPYLAVNEIGIPPY 2669
             N KT+G  E +A GICQLLEKKEGIFRQKMMGKRVN+ACRSVISPDPYLAVNEIGIPPY
Sbjct: 386  DN-KTSGQGE-VAAGICQLLEKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPY 443

Query: 2668 FALRLTYPERVTPWNVNKLRDAIINGAEVHPGATHYVDKLATVKLPPNRKIRTSISRKLH 2489
            FALRL+YPERVTPWNV  LR+AI+NG + HPGATHY D+ ATVKLPPN K+ + ISRKL 
Sbjct: 444  FALRLSYPERVTPWNVTMLRNAILNGPQSHPGATHYTDQQATVKLPPNGKLLSFISRKLP 503

Query: 2488 SSRGVVAQPGKNLEHELEGKVVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLSGEKTLR 2309
            SSRGV+   GK  + E EGK+VYRHL+DGD+VLVNRQPTLHKPSIMAHVVRVL GEKT+R
Sbjct: 504  SSRGVILDHGKISDQEFEGKIVYRHLKDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTVR 563

Query: 2308 MHYANCSTYNADFDGDEMNVHFPQDEISRAEAFNIVNANNQYILPTSGEPTRGLIQDHIV 2129
            MHYANCSTYNADFDGDE+NVHFPQDEISRAEA+NIVNANNQY+ PTSG+P R LIQDHIV
Sbjct: 564  MHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVKPTSGDPIRALIQDHIV 623

Query: 2128 SAVLLTKKDTFLTWEEYNHLLYSSGVSAAARDFFSSKPGQKVSVINSEAEIEPILPAILK 1949
            SA LLTKKDTF+T+E +  LLYSSGVS      FS K GQKV + NSE E+    PAI K
Sbjct: 624  SAALLTKKDTFITYEVFIQLLYSSGVSMTGLGSFSGKHGQKVFMTNSEFEMFLFPPAIWK 683

Query: 1948 PVPMWTGKQVITSLLNHISRTRGFEPLTVEKSGKIKKEYF------GRK----------- 1820
            P P+WTGKQVI++LL +I  TR   P TVEK+ KI   +F      G++           
Sbjct: 684  PEPLWTGKQVISALLYYI--TRDSPPFTVEKNAKIPSNFFKTQVRDGKRHTRDKSRNKVE 741

Query: 1819 -SDEANLLIQKNELVHGVIDKAQFGEYGLVHTVQEFYGSDTAGILLSVLSRLFTVFLQMH 1643
              DE  LLI KN+LV GV+DKAQFG+YG++HTVQE YGS  AG LLS LSRLFT FLQMH
Sbjct: 742  PDDEDKLLIYKNDLVRGVVDKAQFGDYGIIHTVQELYGSKVAGNLLSALSRLFTTFLQMH 801

Query: 1642 GFTCGVDDLLIVQELDMERMKKLQRSDKIGEEQHAKFIGAKEGD-IDQMELQVEIEKAIR 1466
            GFTCGVDDL+I +E D+ERM +L+  ++IG+  H +FIG    D ID + LQ+ IEK IR
Sbjct: 802  GFTCGVDDLMITEEKDVERMDQLRSCEEIGDIVHREFIGVMNSDIIDPITLQLNIEKKIR 861

Query: 1465 IKGESAITQLDRMMSSELNDLTSV-VNSELFPKGLLKPFPKNCLSLMTTSGAKGSLVNFT 1289
              GE+A+T LDR M+S LN  TS  +  +L   G+LKP  KNC+SLMTTSGAKGS+VNF 
Sbjct: 862  SNGEAALTYLDRKMTSNLNSRTSSGILKDLLSDGILKPSGKNCISLMTTSGAKGSMVNFQ 921

Query: 1288 QISSLLGQQQLEGKRVPRMVSGKTLPCFPPWDPASRAGGFITDRFLTGLRPQEYYFHCMA 1109
            QISS LGQQ+LEGKRVPRMVSGKTLPCF PWD + RAGGFI DRFLTGL PQEYYFHCMA
Sbjct: 922  QISSHLGQQELEGKRVPRMVSGKTLPCFAPWDCSPRAGGFIIDRFLTGLHPQEYYFHCMA 981

Query: 1108 GREGLVDTAVKTSRSGYLQRCLVKSLECLKVCYDHTVRDADGSVVQFCYGEDGVDVHKTS 929
            GREGLVDTAVKTSRSGYLQRCL+K+LECLKVCYDHTVRDADGS++QF YGEDGVDVH TS
Sbjct: 982  GREGLVDTAVKTSRSGYLQRCLMKNLECLKVCYDHTVRDADGSIIQFHYGEDGVDVHHTS 1041

Query: 928  FVTKFDTLAANQRVLERLGDHFEDAQMKSDDYIKELPEALEQKTKDFLSNLTKQQRHSLH 749
            F+ KF+ L+ N+ ++   G+       +S  YI +LP+AL++K ++F  +  KQ+  +L 
Sbjct: 1042 FINKFEALSTNKELV--YGNCCRQLD-RSSPYINKLPDALKEKAENFFRDSLKQR--NLG 1096

Query: 748  LRKRKDFXXXXXXXXXXXLAQPGEPVGVIAAQSVGQPSTQMTLNTFHHAGLGAMNVTLGI 569
              KR +F           LAQPGE VGV+A+QSVG+P+TQMTLNTFH AG G MNVTLGI
Sbjct: 1097 SLKRAEFLKLMEHKYVSCLAQPGESVGVLASQSVGEPATQMTLNTFHLAGRGEMNVTLGI 1156

Query: 568  PRLQEILMRASETIQTPVMTCPLLMGKTWDDAKRLAATLKKVSVADIVESIEVSVVPFSV 389
            PRLQEI+M A+  I+TP MTCPL   K+ ++A  LA  LKK++VADI++S++VSVVP SV
Sbjct: 1157 PRLQEIVMAAARDIKTPFMTCPLRSNKSMEEAICLADKLKKITVADIIKSMKVSVVPVSV 1216

Query: 388  KKHQVSSIYKLKMKLYRPELYPPFSDITLEDCLKTMEVLFVGELEEEIQAHLIMLSKISG 209
               QV SIYKL MKLY+P+ YP +SDITLED   T+ + FV ELE+ I+ H+ +LSKISG
Sbjct: 1217 LGGQVCSIYKLVMKLYKPKQYPKYSDITLEDWEDTLRISFVRELEDAIENHMALLSKISG 1276

Query: 208  IKNIVLSAQSGSSKDIDEGDTGSKSQQ--VXXXXXXXXXXXXXXXXXXDLGVDAQKRRRQ 35
            IK      QS S+   D    GS+S+                      DLG DAQKR+RQ
Sbjct: 1277 IKKFKTDPQSHSNSSEDAHGNGSESETKGKSNDDDDDDDVVEDTEGYEDLGSDAQKRKRQ 1336

Query: 34   ATDEMDYED 8
             TDE+DYED
Sbjct: 1337 GTDEVDYED 1345


>ref|XP_006351332.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Solanum
            tuberosum]
          Length = 1675

 Score = 1353 bits (3502), Expect = 0.0
 Identities = 714/1281 (55%), Positives = 907/1281 (70%), Gaps = 31/1281 (2%)
 Frame = -1

Query: 3757 VKKCALQLELIIKGDIVGAKXXXXXXXXXXXXXXXXDRVHVKGLPRQVPNYNSKNL-KQH 3581
            V+KC  +LELI KGD+VGAK                +  H+      +   + +   K+ 
Sbjct: 112  VEKCVSELELIAKGDVVGAKMIDALSPDNSTDREESEGSHMSCAMDDLNMQDHREYNKRP 171

Query: 3580 SWTSLQYSEAMSLLDELMTGQKTECKRCGAKNPKITCPNFGWFHVNMPNKYTRANIIK-G 3404
            SW + Q++EAM+++D ++  +  +C  C AKNPKI  P+FG FH+++ NK  R N I  G
Sbjct: 172  SWDNFQFTEAMAVIDRILKTKTEKCSNCKAKNPKIRKPSFGRFHMDISNKQIRENYINSG 231

Query: 3403 SKLNKLSMGKAKRNSTGEEENANDSSAMGDVDSTDAESSGVVYDGTPDS-AQKVKGGYLY 3227
             + N    G ++ N + E  NA +   +G+ +++   +S    DG  +S A+K +GG   
Sbjct: 232  RRFNLHDTGGSEENPSPEVVNATEP--LGEAETSLCVTST---DGVENSKARKRQGGDQS 286

Query: 3226 PEFLKQKEFFSGPLLPSEVKNHMKLLWENETQLCSLICDIQQERLSISGMKGNYSMFFIE 3047
                +QK+ FS   LPS+V++ ++ LWENE  LC+  CDIQ +  + SG     SMFF++
Sbjct: 287  DVVEQQKDSFSVAHLPSQVRSIIEHLWENEAPLCTFFCDIQSQHHNTSGKVAGPSMFFLD 346

Query: 3046 ALLVPPIKFRPPSKGGDSVMEHPQTVLLNKVMYSNISLCNEHMNSSERSKIVPRWFDLQQ 2867
            ++LVPPIKFRPP+KGGDS+MEHP TVLL KV+ +NI+L N H+N + RSKI+ R  DLQQ
Sbjct: 347  SILVPPIKFRPPAKGGDSIMEHPHTVLLGKVVQANIALGNAHINRAGRSKIISRLMDLQQ 406

Query: 2866 SINVLFGNSKTAGL-RENMATGICQLLEKKEGIFRQKMMGKRVNYACRSVISPDPYLAVN 2690
            S+NVLF +   +G  ++++ +GICQ+LEKKEGIFRQKMMGKRVN+ACRSVISPDPYL+VN
Sbjct: 407  SVNVLFDSKTASGPGQKDVGSGICQMLEKKEGIFRQKMMGKRVNFACRSVISPDPYLSVN 466

Query: 2689 EIGIPPYFALRLTYPERVTPWNVNKLRDAIINGAEVHPGATHYVDKLATVKLPPNRKIRT 2510
            EIGIPPYFALRLTYPER+TPWN  K+RDA+ING E HPGA  + D++ATVKLP N+K+R 
Sbjct: 467  EIGIPPYFALRLTYPERLTPWNAVKMRDAVINGPENHPGAVSFADRIATVKLPSNKKMRV 526

Query: 2509 SISRKLHSSRGVVAQPGKNLEHELEGKVVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVL 2330
            +ISRKL SSRG V Q G+N E+E EGKVVYRHLQDGD+VLVNRQPTLHKPSIMAHVVRVL
Sbjct: 527  AISRKLPSSRGAVTQSGRNNEYEFEGKVVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVL 586

Query: 2329 SGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAFNIVNANNQYILPTSGEPTRG 2150
             GEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEA+NIVNAN QYI+PT G+  RG
Sbjct: 587  KGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANEQYIVPTKGDTVRG 646

Query: 2149 LIQDHIVSAVLLTKKDTFLTWEEYNHLLYSSGVSAAARDFFSSKPGQKVSVINSEAEIEP 1970
            LIQDHIV AV+LT K+TFLT  E+N LLY SGV AA     S     KVSV++ E  ++ 
Sbjct: 647  LIQDHIVGAVILTMKNTFLTLHEFNQLLYGSGVFAAGPAPTSGNHSNKVSVVDFEGVVQT 706

Query: 1969 ILPAILKPVPMWTGKQVITSLLNHISRTRGFEPLTVEKSGKIKKEYFGRKS--------- 1817
            +LPA+ KP P+WTGKQVIT+LLNH+  T+G  P TV+  GKI   YF  +S         
Sbjct: 707  VLPAVWKPKPLWTGKQVITALLNHL--TKGCAPCTVKNKGKIPYPYFLSESRLVEYQSRE 764

Query: 1816 ------DEANLLIQKNELVHGVIDKAQFGEYGLVHTVQEFYGSDTAGILLSVLSRLFTVF 1655
                   E   LI KNELV GVIDKAQFG++GLVHT+QE YGS+ AGILLS LSRLFT+F
Sbjct: 765  EQEDRTAENEFLIWKNELVRGVIDKAQFGKFGLVHTIQELYGSNKAGILLSALSRLFTIF 824

Query: 1654 LQMHGFTCGVDDLLIVQELDMERMKKLQRSDKIGEEQHAKFIGAKEGDIDQMELQVEIEK 1475
            LQ+HGFTCGVDDL+I+   D+ R ++L+  D +GEE H  F+  K G+I  +ELQ+EIEK
Sbjct: 825  LQLHGFTCGVDDLVILPHYDIRRKEELE-GDDVGEEAHCDFVKFKRGEIGPLELQLEIEK 883

Query: 1474 AIRIKGESAITQLDRMMSSELNDLTSVVNSELFPKGLLKPFPKNCLSLMTTSGAKGSLVN 1295
            A+    E+A   LD  M ++L +  S  N EL  KGLLKPFP+NC++LMT +GAKGS VN
Sbjct: 884  AMSSNKEAATAALDMKMKNKLANKGSQFNKELLLKGLLKPFPRNCIALMTITGAKGSTVN 943

Query: 1294 FTQISSLLGQQQLEGKRVPRMVSGKTLPCFPPWDPASRAGGFITDRFLTGLRPQEYYFHC 1115
            F QISS LGQQ+LEGKRVPRMVSGKTLPCFPPWD ASRAGG+++DRFL+GLRPQEYYFHC
Sbjct: 944  FQQISSYLGQQELEGKRVPRMVSGKTLPCFPPWDCASRAGGYVSDRFLSGLRPQEYYFHC 1003

Query: 1114 MAGREGLVDTAVKTSRSGYLQRCLVKSLECLKVCYDHTVRDADGSVVQFCYGEDGVDVHK 935
            MAGREGLVDTAVKTSRSGYLQRCL+K+LE LKVCYD+TVRDADGS++QF YGEDGVDVH+
Sbjct: 1004 MAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQFYYGEDGVDVHR 1063

Query: 934  TSFVTKFDTLAANQRVLERLGDHFEDAQMKSDDYIKELPEALEQKTKDFLSNLTKQQRHS 755
            TSF+  F  L  NQ  + +   H      K + YI++LP+ LE+K K F    TK+    
Sbjct: 1064 TSFLKNFKALKNNQETICQKLRH----GRKLNSYIEKLPDGLEEKVKHFWEKRTKKLEKK 1119

Query: 754  LHLRKRK------------DFXXXXXXXXXXXLAQPGEPVGVIAAQSVGQPSTQMTLNTF 611
            L    +K            DF           LA  GEPVGV+A QSVG+PSTQMTLNTF
Sbjct: 1120 LGKLVKKEEMVKQLKEEEADFLELVRQKYFSSLADSGEPVGVLAGQSVGEPSTQMTLNTF 1179

Query: 610  HHAGLGAMNVTLGIPRLQEILMRASETIQTPVMTCPLLMGKTWDDAKRLAATLKKVSVAD 431
            H AG G MNVTLGIPRLQEILM ASE I+TP++TCP L  ++ +DA+ L A +KK++VAD
Sbjct: 1180 HLAGRGEMNVTLGIPRLQEILMTASEAIKTPILTCPFLGWQSKNDAQSLLAKVKKITVAD 1239

Query: 430  IVESIEVSVVPFSVKKHQVSSIYKLKMKLYRPELYPPFSDITLEDCLKTMEVLFVGELEE 251
            ++ES+EV ++P S+  HQVS +YKL +KL + +       ++ EDC  T++ +F+ ELE+
Sbjct: 1240 MIESMEVKLLPLSIYNHQVSQLYKLTVKLKKHDF------VSSEDCEYTLKFVFLRELED 1293

Query: 250  EIQAHLIMLSKISGIKNIVLSAQSGSSKDIDEGDTGSKSQQVXXXXXXXXXXXXXXXXXX 71
             I++HL +LSKI+GI+N   S++S  S + +E  + ++ ++                   
Sbjct: 1294 AIESHLALLSKINGIQNFKTSSESVDSDETEENASSTRHEE------EMLDDEDEDERTE 1347

Query: 70   DLGVDAQKRRRQATDEMDYED 8
            DL  DAQKR++Q TDEMDY+D
Sbjct: 1348 DLSSDAQKRKQQTTDEMDYDD 1368


>ref|XP_004249758.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Solanum
            lycopersicum]
          Length = 1677

 Score = 1344 bits (3478), Expect = 0.0
 Identities = 712/1285 (55%), Positives = 903/1285 (70%), Gaps = 35/1285 (2%)
 Frame = -1

Query: 3757 VKKCALQLELIIKGDIVGAKXXXXXXXXXXXXXXXXDRVHVKGLP-----RQVPNYNSKN 3593
            V+KC  +LELI KGD+VGAK                +  H+         R    YN   
Sbjct: 112  VEKCVSELELIAKGDVVGAKMIDALSPDNSTDREESEGSHMSCTMDDLNVRDHCEYN--- 168

Query: 3592 LKQHSWTSLQYSEAMSLLDELMTGQKTECKRCGAKNPKITCPNFGWFHVNMPNKYTRANI 3413
             K+ SW + Q++EAM+++D ++  +  +C  C AKNPKI  P+FG FH+++ NK  R N 
Sbjct: 169  -KRPSWDNFQFTEAMAVIDRILKTKTEKCSNCKAKNPKIRKPSFGRFHMDISNKQIRENY 227

Query: 3412 IK-GSKLNKLSMGKAKRNSTGEEENANDSSAMGDVDSTDAESSGVVYDGTPDS-AQKVKG 3239
            I  G + N    G ++ N + E  NA +   +G+ +++   +S    DG  +S  +K +G
Sbjct: 228  INSGRRFNLHDTGGSEENPSPEVVNATEP--LGEAETSLCVTST---DGVENSKGRKRQG 282

Query: 3238 GYLYPEFLKQKEFFSGPLLPSEVKNHMKLLWENETQLCSLICDIQQERLSISGMKGNYSM 3059
            G       +QK+ FS   LPS+V++ ++ LWENE  LC+  CDIQ +  + SG     SM
Sbjct: 283  GDQSDVVEQQKDSFSVAHLPSQVRSIIEHLWENEAPLCTFFCDIQSQHRNTSGKVAGPSM 342

Query: 3058 FFIEALLVPPIKFRPPSKGGDSVMEHPQTVLLNKVMYSNISLCNEHMNSSERSKIVPRWF 2879
            FF++++LVPP+KFRPP+KGGDS+MEHP TVLL KV+ +NI+L N H+N + RSKI+ R  
Sbjct: 343  FFLDSILVPPVKFRPPAKGGDSIMEHPHTVLLGKVIQANIALGNAHINRAGRSKIISRLM 402

Query: 2878 DLQQSINVLFGNSKTAGL-RENMATGICQLLEKKEGIFRQKMMGKRVNYACRSVISPDPY 2702
            DLQQS+NVLF +   +G  ++++ +GICQ+LEKKEGIFRQKMMGKRVN+ACRSVISPDPY
Sbjct: 403  DLQQSVNVLFDSKTASGPGQKDVGSGICQMLEKKEGIFRQKMMGKRVNFACRSVISPDPY 462

Query: 2701 LAVNEIGIPPYFALRLTYPERVTPWNVNKLRDAIINGAEVHPGATHYVDKLATVKLPPNR 2522
            L+VNEIGIPPYFA RLTYPER+TPWN  K+RDA+ING E HPGA  + D++ATVKLP N+
Sbjct: 463  LSVNEIGIPPYFASRLTYPERLTPWNAVKMRDAVINGPENHPGAISFADRIATVKLPSNK 522

Query: 2521 KIRTSISRKLHSSRGVVAQPGKNLEHELEGKVVYRHLQDGDIVLVNRQPTLHKPSIMAHV 2342
            K+R +ISRKL SSRG V Q G+N E+E EGKVVYRHLQDGD+VLVNRQPTLHKPSIMAHV
Sbjct: 523  KMRVAISRKLPSSRGAVTQSGRNNEYEFEGKVVYRHLQDGDVVLVNRQPTLHKPSIMAHV 582

Query: 2341 VRVLSGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAFNIVNANNQYILPTSGE 2162
            VRVL GEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEA+NIVNAN QYI+PT G+
Sbjct: 583  VRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANEQYIVPTKGD 642

Query: 2161 PTRGLIQDHIVSAVLLTKKDTFLTWEEYNHLLYSSGVSAAARDFFSSKPGQKVSVINSEA 1982
              RGLIQDHIV AV+LT K+TFL+  E+N LLY SGV AA     S     KVS+++ E 
Sbjct: 643  TVRGLIQDHIVGAVILTMKNTFLSLHEFNQLLYGSGVFAAGPAPTSGNHSNKVSIVDFEG 702

Query: 1981 EIEPILPAILKPVPMWTGKQVITSLLNHISRTRGFEPLTVEKSGKIKKEYFGRKS----- 1817
             ++ +LPA+ KP P+WTGKQVIT+LLNH+  T G  P TV+  GKI   YF  +S     
Sbjct: 703  VVQTVLPAVWKPKPLWTGKQVITALLNHL--TNGCPPCTVKNKGKIPYAYFLSESRLVEY 760

Query: 1816 ----------DEANLLIQKNELVHGVIDKAQFGEYGLVHTVQEFYGSDTAGILLSVLSRL 1667
                       E   LI KNELV GVIDKAQFG++GLVHT+QE YGS+ AGILLS LSRL
Sbjct: 761  QSREEQEDRTAENEFLIWKNELVRGVIDKAQFGKFGLVHTIQELYGSNKAGILLSALSRL 820

Query: 1666 FTVFLQMHGFTCGVDDLLIVQELDMERMKKLQRSDKIGEEQHAKFIGAKEGDIDQMELQV 1487
            FT+FLQ+HGFTCG+DDL+I+   D+ R ++L+  D +GEE H  F+  K G+I  +ELQ+
Sbjct: 821  FTIFLQLHGFTCGIDDLVILPHYDIRRKEELE-GDDVGEEAHCDFVKFKRGEIGPLELQL 879

Query: 1486 EIEKAIRIKGESAITQLDRMMSSELNDLTSVVNSELFPKGLLKPFPKNCLSLMTTSGAKG 1307
            EIEKAI    E A   LD  M ++L +  S  N EL  KGLLKPFP+NC++LMT +GAKG
Sbjct: 880  EIEKAISSNKEVATAALDMKMKNKLANKGSQFNKELLLKGLLKPFPRNCIALMTITGAKG 939

Query: 1306 SLVNFTQISSLLGQQQLEGKRVPRMVSGKTLPCFPPWDPASRAGGFITDRFLTGLRPQEY 1127
            S VNF QISS LGQQ+LEGKRVPRMVSGKTLPCFP WD ASRAGG+++DRFL+GLRPQEY
Sbjct: 940  STVNFQQISSYLGQQELEGKRVPRMVSGKTLPCFPAWDCASRAGGYVSDRFLSGLRPQEY 999

Query: 1126 YFHCMAGREGLVDTAVKTSRSGYLQRCLVKSLECLKVCYDHTVRDADGSVVQFCYGEDGV 947
            YFHCMAGREGLVDTAVKTSRSGYLQRCL+K+LE LKVCYD+TVRDADGS++QF YGEDGV
Sbjct: 1000 YFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQFYYGEDGV 1059

Query: 946  DVHKTSFVTKFDTLAANQRVLERLGDHFEDAQMKSDDYIKELPEALEQKTKDFLSNLTKQ 767
            DVH+TSF+  F  L  NQ  + +   H      K + YI++LP+ L +K K F  + TK+
Sbjct: 1060 DVHRTSFLKNFKALKNNQETICQKLRH----GCKLNSYIEKLPDGLGEKVKHFWESKTKK 1115

Query: 766  QRHSLHLRKRK------------DFXXXXXXXXXXXLAQPGEPVGVIAAQSVGQPSTQMT 623
                L +  +K            DF           LA  GEPVGV+A QSVG+PSTQMT
Sbjct: 1116 LEKKLGMLVKKEEMVKQLKEEEADFLELVGQKYFSSLADSGEPVGVLAGQSVGEPSTQMT 1175

Query: 622  LNTFHHAGLGAMNVTLGIPRLQEILMRASETIQTPVMTCPLLMGKTWDDAKRLAATLKKV 443
            LNTFH AG G MNVTLGIPRLQEILM ASE I+TP+MTCP L  K+ +DA+ L A +KK+
Sbjct: 1176 LNTFHLAGRGEMNVTLGIPRLQEILMTASEAIKTPIMTCPFLGWKSKNDAQSLLAKVKKI 1235

Query: 442  SVADIVESIEVSVVPFSVKKHQVSSIYKLKMKLYRPELYPPFSDITLEDCLKTMEVLFVG 263
            +VAD++ES+EV ++P S+  HQVS +YKL +KL + +       ++ EDC  T++ +F+ 
Sbjct: 1236 TVADMIESMEVKLLPLSIYNHQVSQLYKLTVKLKKHDF------VSSEDCEYTLKFVFLR 1289

Query: 262  ELEEEIQAHLIMLSKISGIKNIVLSAQSGSSKDIDEGDTGSKSQQVXXXXXXXXXXXXXX 83
            ELE+ I++HL +LSKI+GI+N   S++S  S + +E  + ++ ++               
Sbjct: 1290 ELEDAIESHLALLSKINGIQNFKTSSESVDSDETEENASSTRREE----EMLDDDDDDED 1345

Query: 82   XXXXDLGVDAQKRRRQATDEMDYED 8
                DL  DAQKR++Q TDEMDY+D
Sbjct: 1346 ERTEDLSSDAQKRKQQTTDEMDYDD 1370


>ref|XP_004513648.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Cicer
            arietinum]
          Length = 1650

 Score = 1340 bits (3469), Expect = 0.0
 Identities = 728/1266 (57%), Positives = 896/1266 (70%), Gaps = 20/1266 (1%)
 Frame = -1

Query: 3745 ALQLELIIKGDIVGAKXXXXXXXXXXXXXXXXDRVHVKGLPRQVPNYNSKNLKQHSWTSL 3566
            A QLELI+KG+I  AK                      G   Q    +S      +WTSL
Sbjct: 121  ANQLELIMKGNIAKAKNLDAINLDESADLSD-------GNDSQC---SSDEQLGENWTSL 170

Query: 3565 QYSEAMSLLDELMTGQKTECKRCGAKNPKITCPNFGWFHVN-MPNKYTRANIIKGSKLNK 3389
            Q+SEAMS+L + +  +  +C+ CG  NPKIT P FGWFHV  +     RAN+I G   + 
Sbjct: 171  QFSEAMSVLRKFLKKEFRKCQNCGNINPKITKPTFGWFHVKALSAAQARANVISGIDASL 230

Query: 3388 LSMGKAKRNSTGEEENANDSSAMGDVDSTDAESSGVVYDGTPDSAQKVKGGYLYPEFLKQ 3209
             S            E  +D  ++G+ D+TD E   +    T +S  K +        L +
Sbjct: 231  AS------------EIIHDDISLGNGDTTDVED--ITSGDTANSNAKRQNK------LAR 270

Query: 3208 KEFFSGPLLPSEVKNHMKLLWENETQLCSLICDIQQERLSISGMKGNYSMFFIEALLVPP 3029
                SG LLPS+V+  ++LLWENE +LC  I DIQ +     G K  +SMFF++ + VPP
Sbjct: 271  HNKLSGSLLPSQVQGILELLWENEARLCLYISDIQGQGF---GKKAGHSMFFLDNIYVPP 327

Query: 3028 IKFRPPSKGGDSVMEHPQTVLLNKVMYSNISLCNEHMNSSERSKIVPRWFDLQQSINVLF 2849
            IKFRPP+KG D V EH QTVLL +V+ SNISL   H+N S+ S ++ RW DLQ+S+N+LF
Sbjct: 328  IKFRPPTKGDDKVSEHAQTVLLTRVLESNISLGQAHLNKSDASVVLRRWMDLQRSVNLLF 387

Query: 2848 GNSKTAGLRENMATGICQLLEKKEGIFRQKMMGKRVNYACRSVISPDPYLAVNEIGIPPY 2669
             N KTA  ++++ TGICQLLEKKEGIFRQKMMGKRVNYACRSVISPDPYLAVNEIGIPPY
Sbjct: 388  DN-KTASGQKDLVTGICQLLEKKEGIFRQKMMGKRVNYACRSVISPDPYLAVNEIGIPPY 446

Query: 2668 FALRLTYPERVTPWNVNKLRDAIINGAEVHPGATHYVDKLATVKLPPNRKIRTSISRKLH 2489
            FALRLTYPERVTPWNV +LR+AI+NG E HPGAT Y DK +T+KLP +R+ R+  SRKL 
Sbjct: 447  FALRLTYPERVTPWNVVELRNAILNGPETHPGATLYADKTSTLKLPLDRRSRSLTSRKLQ 506

Query: 2488 SSRGVVAQPGKNLEHELEGKVVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLSGEKTLR 2309
            SSRGV+   GK  ++E EGKVVYRHL+DGD+VLVNRQPTLHKPSIMAHVVRVL GEKT+R
Sbjct: 507  SSRGVIMHNGKIHDNEFEGKVVYRHLKDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTVR 566

Query: 2308 MHYANCSTYNADFDGDEMNVHFPQDEISRAEAFNIVNANNQYILPTSGEPTRGLIQDHIV 2129
            MHYANCSTYNADFDGDE+NVHFPQDEISRAEA+NIVNANNQY+ PTSG+P R LIQDHIV
Sbjct: 567  MHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVKPTSGDPIRALIQDHIV 626

Query: 2128 SAVLLTKKDTFLTWEEYNHLLYSSGVSAAARDFFSSKPGQKVSVINSEAEIEPILPAILK 1949
            SA LLTKKDTFL+ EE+N LLYSSGVS      F  KPGQK+ + NS++E+    PAI K
Sbjct: 627  SAALLTKKDTFLSCEEFNQLLYSSGVSMTGMGPFPGKPGQKIFMSNSDSEMFLFPPAIFK 686

Query: 1948 PVPMWTGKQVITSLLNHISRTRGFEPLTVEKSGKIKKEYF------GRK----------- 1820
            P P+WTGKQVI++LL +I  T+G  P TVEK+ KI   +F      G+K           
Sbjct: 687  PEPLWTGKQVISALLYYI--TKGSPPFTVEKNAKIPSSFFKTRMREGKKRTKDTSIKKDE 744

Query: 1819 SDEANLLIQKNELVHGVIDKAQFGEYGLVHTVQEFYGSDTAGILLSVLSRLFTVFLQMHG 1640
             DE  LLI +N+LV GV+DKAQFG+YG+VHTVQEFYGS+TAGILLS LSRLFT FLQMHG
Sbjct: 745  PDEDKLLIYRNDLVRGVVDKAQFGDYGIVHTVQEFYGSNTAGILLSALSRLFTNFLQMHG 804

Query: 1639 FTCGVDDLLIVQELDMERMKKLQRSDKIGEEQHAKFIGAKEGD-IDQMELQVEIEKAIRI 1463
            FTCGVDDLL+ +  D ER  +L+  ++IG+  H +FIG  EGD ID + +Q+ +EK IR 
Sbjct: 805  FTCGVDDLLLTEGKDSERTNQLESCEEIGDIVHREFIGVMEGDNIDPITMQLNVEKKIRS 864

Query: 1462 KGESAITQLDRMMSSELNDLTSV-VNSELFPKGLLKPFPKNCLSLMTTSGAKGSLVNFTQ 1286
             GE+AIT LDR M S LN  TS  V   L  +G+LKP  KN +SLMTTSGAKGS+VNF Q
Sbjct: 865  NGEAAITYLDRKMISNLNSRTSTGVLKVLLSEGILKPSGKNWISLMTTSGAKGSMVNFQQ 924

Query: 1285 ISSLLGQQQLEGKRVPRMVSGKTLPCFPPWDPASRAGGFITDRFLTGLRPQEYYFHCMAG 1106
            ISS LGQQ+LEGKRVPRMVSGKTLPCF  WD + RAGGFI DRFLT LRPQEYYFHCMAG
Sbjct: 925  ISSHLGQQELEGKRVPRMVSGKTLPCFTSWDCSPRAGGFIIDRFLTALRPQEYYFHCMAG 984

Query: 1105 REGLVDTAVKTSRSGYLQRCLVKSLECLKVCYDHTVRDADGSVVQFCYGEDGVDVHKTSF 926
            REGLVDTAVKTSRSGYLQRCL+K+LECLKVCYDHTVRDADGS++QF YGEDGVDVH+TSF
Sbjct: 985  REGLVDTAVKTSRSGYLQRCLMKNLECLKVCYDHTVRDADGSIIQFHYGEDGVDVHQTSF 1044

Query: 925  VTKFDTLAANQRVLERLGDHFEDAQMKSDDYIKELPEALEQKTKDFLSNLTKQQRHSLHL 746
            + KF+ L+ N+ ++        D   KS  YI +LP+AL+ K + F+ + + +QR+S  +
Sbjct: 1045 INKFEALSTNKELVYSNCCRELD---KSSPYINKLPDALKGKAEKFILDSSSKQRNSGSM 1101

Query: 745  RKRKDFXXXXXXXXXXXLAQPGEPVGVIAAQSVGQPSTQMTLNTFHHAGLGAMNVTLGIP 566
                +F           LAQPGEPVGV+A+QSVG+P+TQMTLNTFH AG G MNVTLGIP
Sbjct: 1102 -THTNFLHLMEHKYVSSLAQPGEPVGVLASQSVGEPATQMTLNTFHLAGRGEMNVTLGIP 1160

Query: 565  RLQEILMRASETIQTPVMTCPLLMGKTWDDAKRLAATLKKVSVADIVESIEVSVVPFSVK 386
            RLQEIL  AS  I+TP MTCPL   K+ +DA RLA  +KK++VADI+ES++VSVVP +V+
Sbjct: 1161 RLQEILTAASAHIKTPFMTCPLRPNKSMEDAIRLADKMKKITVADIIESMKVSVVPVTVQ 1220

Query: 385  KHQVSSIYKLKMKLYRPELYPPFSDITLEDCLKTMEVLFVGELEEEIQAHLIMLSKISGI 206
              ++ SIYKL MKL++P+ YP ++D+TL+D  +T+ V FV  LE+ I+ ++ +L+KISGI
Sbjct: 1221 DGRICSIYKLMMKLHKPKHYPKYTDVTLKDWEETLRVSFVRGLEDAIENNIALLAKISGI 1280

Query: 205  KNIVLSAQSGSSKDIDEGDTGSKSQQVXXXXXXXXXXXXXXXXXXDLGVDAQKRRRQATD 26
             N    AQ  SS   ++  +  K+                     DLG+DAQK +RQ  D
Sbjct: 1281 TNFKTDAQPNSSNGAEDDPSNGKTND----DDDDDGDADDTEGAEDLGLDAQKSKRQVVD 1336

Query: 25   EMDYED 8
            ++DY+D
Sbjct: 1337 DVDYDD 1342


>ref|XP_004513652.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Cicer
            arietinum]
          Length = 1660

 Score = 1337 bits (3460), Expect = 0.0
 Identities = 723/1269 (56%), Positives = 894/1269 (70%), Gaps = 23/1269 (1%)
 Frame = -1

Query: 3745 ALQLELIIKGDIVGAKXXXXXXXXXXXXXXXXDRVHVKGLPRQVPNYNSKNLKQHSWTSL 3566
            A QLELI+KG+I  AK                D        +   N          WTSL
Sbjct: 121  ANQLELIMKGNIAKAKNLDEINLDESADLCDGDDSQCSSAEQLGEN----------WTSL 170

Query: 3565 QYSEAMSLLDELMTGQKTECKRCGAKNPKITCPNFGWFHVN-MPNKYTRANIIKGSKLNK 3389
            Q+SEAMS+L + +  +  +C+ CG  NPKIT P FGWFHV  +     RAN+I G+ ++ 
Sbjct: 171  QFSEAMSVLRKFLKKEYRKCQNCGYINPKITIPTFGWFHVKALSAAQARANVISGNDVSL 230

Query: 3388 LSMGKAKRNSTGEEENANDSSAMGDVDSTDAE--SSGVVYDGTPDSAQKVKGGYLYPEFL 3215
             S            E  +D  ++G+ D+TD E  +SG + +       K K         
Sbjct: 231  AS------------EIIHDDISLGNGDTTDVEDITSGDIANSNAKRHNKEKQ-------- 270

Query: 3214 KQKEFFSGPLLPSEVKNHMKLLWENETQLCSLICDIQQERLSISGMKGNYSMFFIEALLV 3035
                  +G LLPS+V+  ++LLWEN+ +LC  I DIQ   +   G K  +SMFF+E + V
Sbjct: 271  ISSHTLAGSLLPSQVQRILELLWENDARLCLYISDIQGLGI---GKKAGHSMFFLENIYV 327

Query: 3034 PPIKFRPPSKGGDSVMEHPQTVLLNKVMYSNISLCNEHMNSSERSKIVPRWFDLQQSINV 2855
            PPIKFRPP+KG D V EH QTVLL +V+ SNISL   H+N S+ S ++ RW DLQ+S+N+
Sbjct: 328  PPIKFRPPTKGDDKVSEHAQTVLLTRVLESNISLGQAHLNKSDASVVLRRWMDLQRSVNL 387

Query: 2854 LFGNSKTAG-LRENMATGICQLLEKKEGIFRQKMMGKRVNYACRSVISPDPYLAVNEIGI 2678
            LF N   +G  ++++ TGICQLLEKKEGIFRQKMMGKRVNYACRSVISPDPYLAVNEIGI
Sbjct: 388  LFDNKTASGESQKDLVTGICQLLEKKEGIFRQKMMGKRVNYACRSVISPDPYLAVNEIGI 447

Query: 2677 PPYFALRLTYPERVTPWNVNKLRDAIINGAEVHPGATHYVDKLATVKLPPNRKIRTSISR 2498
            PPYFALRLTYPERVTPWNV +LR+AI+NG E HPGAT Y DK +T+KLP +R+ R+  SR
Sbjct: 448  PPYFALRLTYPERVTPWNVVELRNAILNGPETHPGATLYADKTSTLKLPLDRRSRSLTSR 507

Query: 2497 KLHSSRGVVAQPGKNLEHELEGKVVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLSGEK 2318
            +L SSRGV+   GK  ++E EGKVVYRHL+DGD+VLVNRQPTLHKPSIMAHVVRVL GEK
Sbjct: 508  RLQSSRGVIMHNGKIHDNEFEGKVVYRHLKDGDVVLVNRQPTLHKPSIMAHVVRVLKGEK 567

Query: 2317 TLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAFNIVNANNQYILPTSGEPTRGLIQD 2138
            T+RMHYANCSTYNADFDGDE+NVHFPQDEISRAEA+NIVNANNQY+ PTSG+P R LIQD
Sbjct: 568  TVRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVKPTSGDPIRALIQD 627

Query: 2137 HIVSAVLLTKKDTFLTWEEYNHLLYSSGVSAAARDFFSSKPGQKVSVINSEAEIEPILPA 1958
            HIVSA LLTKKDTFL+ EE+N LLYSSGVS      F  KPGQK+ + NS++E+    PA
Sbjct: 628  HIVSAALLTKKDTFLSCEEFNQLLYSSGVSMTGMGPFPGKPGQKIFMSNSDSEMFLFPPA 687

Query: 1957 ILKPVPMWTGKQVITSLLNHISRTRGFEPLTVEKSGKIKKEYF------GRK-------- 1820
            I KP P+WTGKQVI++LL +I  T+G  P TVEK+ KI   +F      G+K        
Sbjct: 688  IFKPEPLWTGKQVISALLYYI--TKGSPPFTVEKNAKIPSSFFKTRMREGKKRTKDTSIK 745

Query: 1819 ---SDEANLLIQKNELVHGVIDKAQFGEYGLVHTVQEFYGSDTAGILLSVLSRLFTVFLQ 1649
                DE  LLI KN+LV GV+DKAQFG+YG+VHTVQEFYGS+TAG LLS LSRLFT FLQ
Sbjct: 746  KDEPDEDKLLIYKNDLVRGVVDKAQFGDYGIVHTVQEFYGSNTAGFLLSALSRLFTNFLQ 805

Query: 1648 MHGFTCGVDDLLIVQELDMERMKKLQRSDKIGEEQHAKFIGAKEGD-IDQMELQVEIEKA 1472
            MHGFTCGVDDLL+ +  D ER  +L+  ++IG+  H +FIG  EGD ID + +Q+ +EK 
Sbjct: 806  MHGFTCGVDDLLLTEGKDSERTNQLESCEEIGDIVHREFIGVMEGDNIDPITMQLNVEKK 865

Query: 1471 IRIKGESAITQLDRMMSSELNDLTSV-VNSELFPKGLLKPFPKNCLSLMTTSGAKGSLVN 1295
            IR  GE+AIT LDR M S LN  TS  V  EL  +G+LKP  KN +SLMTTSGAKGS+VN
Sbjct: 866  IRSNGEAAITYLDRKMISNLNSRTSSGVLKELLSEGILKPSGKNWISLMTTSGAKGSMVN 925

Query: 1294 FTQISSLLGQQQLEGKRVPRMVSGKTLPCFPPWDPASRAGGFITDRFLTGLRPQEYYFHC 1115
            F QISS LGQQ+LEGKRVPRMVSGKTLPCF  WD + RAGGFI DRFLT LRPQEYYFHC
Sbjct: 926  FQQISSHLGQQELEGKRVPRMVSGKTLPCFTSWDCSPRAGGFIIDRFLTALRPQEYYFHC 985

Query: 1114 MAGREGLVDTAVKTSRSGYLQRCLVKSLECLKVCYDHTVRDADGSVVQFCYGEDGVDVHK 935
            MAGREGLVDTAVKTSRSGYLQRCL+K+LECLKVCYDHTVRDADGS++QF YGEDGVDVH+
Sbjct: 986  MAGREGLVDTAVKTSRSGYLQRCLMKNLECLKVCYDHTVRDADGSIIQFHYGEDGVDVHQ 1045

Query: 934  TSFVTKFDTLAANQRVLERLGDHFEDAQMKSDDYIKELPEALEQKTKDFLSNLTKQQRHS 755
            TSF+ KF+ L+ N+ ++        D   +S  YI +LP+AL+ K + F+ + + +QR+S
Sbjct: 1046 TSFINKFEALSTNKELVYSNCCRELD---ESSPYINKLPDALKGKAEKFIRDSSSKQRNS 1102

Query: 754  LHLRKRKDFXXXXXXXXXXXLAQPGEPVGVIAAQSVGQPSTQMTLNTFHHAGLGAMNVTL 575
              +    +F           LAQPGEPVGV+A+QSVG+P+TQMTLNTFH AG G MNVTL
Sbjct: 1103 GSM-THTNFLQLMEHKYVSSLAQPGEPVGVLASQSVGEPATQMTLNTFHLAGRGEMNVTL 1161

Query: 574  GIPRLQEILMRASETIQTPVMTCPLLMGKTWDDAKRLAATLKKVSVADIVESIEVSVVPF 395
            GIPRLQEIL  AS  I+TP MTCPL   K+ +DA RLA  +KK++VADI+ES++VSVVP 
Sbjct: 1162 GIPRLQEILTAASAHIKTPFMTCPLRPNKSMEDAIRLADKMKKITVADIIESMKVSVVPV 1221

Query: 394  SVKKHQVSSIYKLKMKLYRPELYPPFSDITLEDCLKTMEVLFVGELEEEIQAHLIMLSKI 215
            +V+  ++ SIYKL MKL++P+ YP ++D+TL+D  +T+ V FV  LE+ I+ ++ +L+KI
Sbjct: 1222 TVQDGRICSIYKLMMKLHKPKHYPKYTDVTLKDWEETLRVSFVRGLEDAIENNIALLAKI 1281

Query: 214  SGIKNIVLSAQSGSSKDIDEGDTGSKSQQVXXXXXXXXXXXXXXXXXXDLGVDAQKRRRQ 35
            SGI N    AQ  SS   ++  +  K+                     DLG+DAQK +RQ
Sbjct: 1282 SGITNFKTDAQPNSSNGAEDDPSNGKTND--DDDDDDDGDADDTEGAEDLGLDAQKSKRQ 1339

Query: 34   ATDEMDYED 8
              D++DY+D
Sbjct: 1340 VVDDVDYDD 1348


>ref|XP_003607990.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
            gi|355509045|gb|AES90187.1| DNA-directed RNA polymerase
            subunit beta [Medicago truncatula]
          Length = 1628

 Score = 1325 bits (3430), Expect = 0.0
 Identities = 721/1269 (56%), Positives = 887/1269 (69%), Gaps = 19/1269 (1%)
 Frame = -1

Query: 3757 VKKCALQLELIIKGDIVGAKXXXXXXXXXXXXXXXXDRVHVKGLPRQVPNYNSKNLKQHS 3578
            VK+ A QLELI+KG+I  AK                D             ++       S
Sbjct: 118  VKRRASQLELILKGNISKAKSLGEIKLNETIDSVDDDD--------DDSQWSGAEQLGES 169

Query: 3577 WTSLQYSEAMSLLDELMTGQKTECKRCGAKNPKITCPNFGWFHVN-MPNKYTRANIIKGS 3401
            WTSLQ+SEAMS++ E +     +C  CG  +PKIT P FG F+V  + +   RAN+I  +
Sbjct: 170  WTSLQFSEAMSVIYEFLAKDYKKCLNCGCISPKITKPTFGRFNVKALSSVQARANVISSA 229

Query: 3400 KLNKLSMGKAKRNSTGEEENANDSSAMGDVDSTDAESSGVVYDGTPDSAQKVKGGYLYPE 3221
            K                       +A    D  D  S G       +    +K       
Sbjct: 230  K-----------------------AADVQADEEDITSGGAGNSNGNNQILSIK------- 259

Query: 3220 FLKQKEFFSGPLLPSEVKNHMKLLWENETQLCSLICDIQQERLSISGMKGNYSMFFIEAL 3041
             L ++   SG LLPS+V+  +KLLW+NE++LCS I DIQ +     G K  +SMFF+E +
Sbjct: 260  -LVEQSSLSGSLLPSQVQEMIKLLWKNESRLCSHISDIQDQGF---GKKAGHSMFFLENI 315

Query: 3040 LVPPIKFRPPSKGGDSVMEHPQTVLLNKVMYSNISLCNEHMNSSERSKIVPRWFDLQQSI 2861
             VPPIKFRPP K GD+V EHPQTVLL+KV+ SNISL + H   S+   I+ RW DLQ S+
Sbjct: 316  FVPPIKFRPPLKAGDNVAEHPQTVLLSKVLESNISLADAHRTKSDAYYILRRWQDLQGSV 375

Query: 2860 NVLFGNSKTAGLRENMATGICQLLEKKEGIFRQKMMGKRVNYACRSVISPDPYLAVNEIG 2681
            N+LF N KT+   +  A+GICQLL+KKEGIFRQKMMGKRVNYACRSVISPDPYLAVNEIG
Sbjct: 376  NLLFDN-KTSLRSQKDASGICQLLDKKEGIFRQKMMGKRVNYACRSVISPDPYLAVNEIG 434

Query: 2680 IPPYFALRLTYPERVTPWNVNKLRDAIINGAEVHPGATHYVDKLATVKLPPNRKIRTSIS 2501
            IPPYFALRLTYPERVTPWN  KL DAI+NG + HPGA  Y DK +T++L  ++ +R+S S
Sbjct: 435  IPPYFALRLTYPERVTPWNSAKLMDAILNGPDTHPGAILYTDKTSTLRLQKDKSLRSSTS 494

Query: 2500 RKLHSSRGVVAQPGKNLEHELEGKVVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLSGE 2321
            R+L SSRGV+   GK  EHE EGKVVYRHL+DGD+VLVNRQPTLHKPSIMAHVVRVL GE
Sbjct: 495  RRLQSSRGVIMHHGKIHEHEFEGKVVYRHLKDGDVVLVNRQPTLHKPSIMAHVVRVLKGE 554

Query: 2320 KTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAFNIVNANNQYILPTSGEPTRGLIQ 2141
            KT+RMHYANCSTYNADFDGDE+NVHFPQDEISRAEA+NIVNANNQY+ PTSG+P R LIQ
Sbjct: 555  KTVRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVKPTSGDPIRALIQ 614

Query: 2140 DHIVSAVLLTKKDTFLTWEEYNHLLYSSGVSAAARDFFSSKPGQKVSVINSEAEIEPILP 1961
            DHIVSA LLTKKDTFL+ +E+N LLYSSGVS      FS KPGQKV + NSE+E+    P
Sbjct: 615  DHIVSAALLTKKDTFLSCQEFNQLLYSSGVSMTGMGSFSCKPGQKVLMSNSESEMFLFPP 674

Query: 1960 AILKPVPMWTGKQVITSLLNHISRTRGFEPLTVEKSGKIKKEYF--------------GR 1823
            AI KP P+WTGKQVI++LL +I  T+G  P TVEK+ KI   +F               R
Sbjct: 675  AIFKPEPLWTGKQVISALLCYI--TKGRPPFTVEKNAKIPSSFFKTQTGEIKKHTKDTSR 732

Query: 1822 KSDEA--NLLIQKNELVHGVIDKAQFGEYGLVHTVQEFYGSDTAGILLSVLSRLFTVFLQ 1649
            K DE    LLI +N+LV GV+DKAQFG+YG+VHTVQEFYGS+TAGILLS LSRLFT FLQ
Sbjct: 733  KKDELEDKLLIYRNDLVRGVVDKAQFGDYGMVHTVQEFYGSNTAGILLSALSRLFTNFLQ 792

Query: 1648 MHGFTCGVDDLLIVQELDMERMKKLQRSDKIGEEQHAKFIGAKEGD-IDQMELQVEIEKA 1472
            MHGFTCGVDDLLI    D ER+ +L+  ++IG+  H +FIG  E + ID + +Q+ +EK 
Sbjct: 793  MHGFTCGVDDLLIKVGKDSERLNQLESCEEIGDIVHREFIGVMESENIDPITMQLNVEKK 852

Query: 1471 IRIKGESAITQLDRMMSSELNDLTSV-VNSELFPKGLLKPFPKNCLSLMTTSGAKGSLVN 1295
            IR  GE+AIT LDR M S LN  TS  V  EL  KG LKP  KN +SLMTTSGAKGS+VN
Sbjct: 853  IRSNGEAAITYLDRKMISNLNSRTSSGVLKELLSKGSLKPSGKNWISLMTTSGAKGSMVN 912

Query: 1294 FTQISSLLGQQQLEGKRVPRMVSGKTLPCFPPWDPASRAGGFITDRFLTGLRPQEYYFHC 1115
            F QISS LGQQ+LEGKRVPRMVSGKTLPCFP WD + RAGGFI DRFLT LRPQEYYFHC
Sbjct: 913  FQQISSHLGQQELEGKRVPRMVSGKTLPCFPSWDCSPRAGGFIIDRFLTALRPQEYYFHC 972

Query: 1114 MAGREGLVDTAVKTSRSGYLQRCLVKSLECLKVCYDHTVRDADGSVVQFCYGEDGVDVHK 935
            MAGREGLVDTAVKTSRSGYLQRCL+K+LE LKVCYDHTVRD+DGS++QF YGEDGVDVH+
Sbjct: 973  MAGREGLVDTAVKTSRSGYLQRCLMKNLESLKVCYDHTVRDSDGSIIQFHYGEDGVDVHQ 1032

Query: 934  TSFVTKFDTLAANQRVLERLGDHFEDAQMKSDDYIKELPEALEQKTKDFLSNLTKQQRHS 755
            TSF+ KF+ L+ N+ ++        D   +S  YI +LP+AL+ K ++F+ + + +QR+S
Sbjct: 1033 TSFINKFEALSINKELIYSNCCRQLD---RSSPYINKLPDALKGKAENFIRDFSSKQRNS 1089

Query: 754  LHLRKRKDFXXXXXXXXXXXLAQPGEPVGVIAAQSVGQPSTQMTLNTFHHAGLGAMNVTL 575
              + K  DF           LAQPGEPVGV+A+QSVG+P+TQMTLNTFH AG G MNVTL
Sbjct: 1090 SSM-KEADFLQVMEHKYVSSLAQPGEPVGVLASQSVGEPATQMTLNTFHLAGRGEMNVTL 1148

Query: 574  GIPRLQEILMRASETIQTPVMTCPLLMGKTWDDAKRLAATLKKVSVADIVESIEVSVVPF 395
            GIPRL EI++ AS+ I+TP MTCPL   K+ +DA RLA  +KK++VADI+ES++VSVVP 
Sbjct: 1149 GIPRLHEIVVAASKNIKTPFMTCPLRPNKSMEDAIRLADKMKKITVADIIESMKVSVVPV 1208

Query: 394  SVKKHQVSSIYKLKMKLYRPELYPPFSDITLEDCLKTMEVLFVGELEEEIQAHLIMLSKI 215
            +VK+ ++ SIYKL MKL++P+ YP ++D+TLED  +T+ V FV ELE+ I+ H+ +L++I
Sbjct: 1209 AVKEGRICSIYKLTMKLHKPKHYPKYTDVTLEDWEETLRVGFVRELEDAIENHISLLARI 1268

Query: 214  SGIKNIVLSAQSGSSKDIDEGDTGSKSQQVXXXXXXXXXXXXXXXXXXDLGVDAQKRRRQ 35
            SGIK+    + S +  D D  +  + +Q                      G DAQK +++
Sbjct: 1269 SGIKDFQGKSNSSNGLDNDHSNESASNQNGQTDDDDEVGDTEDAEED---GFDAQKSKQR 1325

Query: 34   ATDEMDYED 8
            ATDE+DY+D
Sbjct: 1326 ATDEVDYDD 1334


>gb|EYU39881.1| hypothetical protein MIMGU_mgv1a000122mg [Mimulus guttatus]
          Length = 1719

 Score = 1301 bits (3366), Expect = 0.0
 Identities = 705/1249 (56%), Positives = 872/1249 (69%), Gaps = 52/1249 (4%)
 Frame = -1

Query: 3598 KNLKQHSWTSLQYSEAMSLLDELMTGQKTECKRCGAKNPKITCPNFGWFHVNMPN--KYT 3425
            K+ +Q SW+S Q +EA+S+++E +  +  +C  C  + PKI+ P FGWF V      K  
Sbjct: 183  KDDEQASWSSAQLAEAISVMNEYLRRKGKKCMNCEMRCPKISKPTFGWFQVGGATSAKAI 242

Query: 3424 RANIIKGSKLNKLSMGKAKRNSTGEEENANDSSAMGDVDSTDAESSGVVYDGTPDS---- 3257
            R N+I+  KL++      + N + E  NA D S   D ++ ++ S     + T  S    
Sbjct: 243  RENVIRSHKLDESDSDGGEDNFSSEVVNAGDHSMNDDSETVESNSFIATSNSTKKSKKKG 302

Query: 3256 ---AQKVKGGYLYPEFLKQKEFFSGPLLPSEVKNHMKLLWENETQLCSLICDIQQERLSI 3086
               A+K+  G   P F     + SGPLLPS+V++ +KLLWE E   CS I DIQ+++   
Sbjct: 303  VNRAKKLNPGSGDPNF-----YLSGPLLPSQVRDILKLLWEKEASFCSYISDIQRQKCKP 357

Query: 3085 SGMKGNYSMFFIEALLVPPIKFRPPSKGGDSVMEHPQTVLLNKVMYSNISLCNEHMNSSE 2906
             G K  YSMFF+E +LVPPI+FRPP+KGGDSVMEHPQTVLL KV+ SNI+L N H+N+ E
Sbjct: 358  FGNKTGYSMFFLETVLVPPIRFRPPAKGGDSVMEHPQTVLLGKVLQSNIALGNAHVNA-E 416

Query: 2905 RSKIVPRWFDLQQSINVLFGNSKTAGL-RENMATGICQLLEKKEGIFRQKMMGKRVNYAC 2729
            +SKI+ RW +LQQSINV F +     L +++   GICQ LEKKEGIFRQKMMGKRVN+AC
Sbjct: 417  KSKIISRWMELQQSINVYFDSKTATSLAQKDSIAGICQFLEKKEGIFRQKMMGKRVNFAC 476

Query: 2728 RSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVNKLRDAIINGAEVHPGATHYVDKL 2549
            RSVISPDPYLAVNEIGIPPYFAL+LTYPERVTPWN  KLR A++NG ++HPGAT YVD +
Sbjct: 477  RSVISPDPYLAVNEIGIPPYFALKLTYPERVTPWNAAKLRGAVVNGPDIHPGATTYVDSV 536

Query: 2548 ATVKLPPNRKIRTSISRKLHSSRGVVAQPGKNLEHELEGKVVYRHLQDGDIVLVNRQPTL 2369
              VKLPP++K+R +ISRKL SSRGVV Q GK  + E EGK V+RHLQDGDIVLVNRQPTL
Sbjct: 537  TIVKLPPSQKMRVAISRKLPSSRGVVTQSGKFDDLEFEGKTVHRHLQDGDIVLVNRQPTL 596

Query: 2368 HKPSIMAHVVRVLSGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAFNIVNANN 2189
            HKPSIMAHVVRVL GE+TLRMHYANCS+YNADFDGDE+NVHFPQDEISRAEA+NIVNAN 
Sbjct: 597  HKPSIMAHVVRVLHGERTLRMHYANCSSYNADFDGDEINVHFPQDEISRAEAYNIVNANE 656

Query: 2188 QYILPTSGEPTRGLIQDHIVSAVLLTKKDTFLTWEEYNHLLYSSGVSAAARDFFSSKPGQ 2009
            QYI+PT G+  RGLIQDHIV AVLLT K+TF+   E+N LLY SGV A+          +
Sbjct: 657  QYIVPTKGDTVRGLIQDHIVGAVLLTMKNTFVNRSEFNQLLYGSGVFASGPGSLPKNNSR 716

Query: 2008 KVSVINSEAEIEPILPAILKPVPMWTGKQVITSLLNHISRTRGFEPLTVEKSGKIKKEYF 1829
            KV++I++E  +E +LPAI KP P+WTGKQVIT+LLNHI  TRG  P TVE  GKI K YF
Sbjct: 717  KVTLIDTEGVVESVLPAIWKPEPLWTGKQVITALLNHI--TRGCAPFTVENQGKIPKNYF 774

Query: 1828 -------GRKSD----EANLLIQKNELVHGVIDKAQFGEYGLVHTVQEFYGSDTAGILLS 1682
                   G + +    E NLL+ KNELV GVIDKAQFG++GLVHTVQE YG+ +AGI LS
Sbjct: 775  FGNSYTRGEEDEDQNAEHNLLVWKNELVRGVIDKAQFGKFGLVHTVQELYGASSAGIFLS 834

Query: 1681 VLSRLFTVFLQMHGFTCGVDDLLIVQELDMERMKKLQRSDKIGEEQHAKFIGAKEGDIDQ 1502
             LSR+FT+FLQ+HGFTCGVDDL+I+ + D +R +KL+  D +GE  H  F+  K G I  
Sbjct: 835  ALSRVFTLFLQIHGFTCGVDDLIILPDYDDQRKEKLEGED-VGEVVHCDFVKFKPGQIGP 893

Query: 1501 MELQVEIEKAIRIKGESAITQLDRMMSSELND-LT---SVVNSELFPKGLLKPFPKNCLS 1334
             ELQ+EIEK I    ESA   LD  M ++LN  LT   S +   L   GLLKPFPKNC+S
Sbjct: 894  DELQLEIEKVICTDRESATASLDMKMKNKLNSKLTREGSQILKHLLTAGLLKPFPKNCIS 953

Query: 1333 LMTTSGAKGSLVNFTQISSLLGQQQLEGKRVPRMVSGKTLPCFPPWDPASRAGGFITDRF 1154
            +MTT+GAKGS VNF QIS+ LGQQ+LEGKRVPRMVSGKTLP FPPWD  SRAGGFITDRF
Sbjct: 954  VMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPSFPPWDFTSRAGGFITDRF 1013

Query: 1153 LTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKSLECLKVCYDHTVRDADGSVV 974
            LTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVK+LE LKVCYD+TVRDADGS+V
Sbjct: 1014 LTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKNLESLKVCYDYTVRDADGSIV 1073

Query: 973  QFCYGEDGVDVHKTSFVTKFDTLAANQRVLERLGDHFEDAQMKSDDYIKELPEALEQKTK 794
            QF YGEDG+DVH+TSF+  F  L  N+  + +   H    + + + YIK+LPE LE++ K
Sbjct: 1074 QFYYGEDGIDVHRTSFLNNFKALQDNRETICQKFQH----KREFNSYIKKLPEGLEEEAK 1129

Query: 793  DFL-----SNLTKQQR------HSLHLRKRKD----------------FXXXXXXXXXXX 695
             F+      +L KQ        HS    ++K+                F           
Sbjct: 1130 RFIQETQNKSLAKQSTSAGEGPHSSRKARKKEKLLKKEKAAAAYEQDAFLELVKQKYLSS 1189

Query: 694  LAQPGEPVGVIAAQSVGQPSTQMTLNTFHHAGLGAMNVTLGIPRLQEILMRASETIQTPV 515
            LAQ GEPVGVIAAQSVG+PSTQMTLNTFH AG G MNVTLGIPRLQEILM ASE I+TP+
Sbjct: 1190 LAQAGEPVGVIAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMSASEVIKTPL 1249

Query: 514  MTCPLLMGKTWDDAKRLAATLKKVSVADIVESIEVSVVPFSVKKHQVSSIYKLKMKLYRP 335
            +TCP    ++  +   L + +KKVSVAD++E++EV +   SV     + +YKLKM L   
Sbjct: 1250 LTCPFSQWRSKREVVSLVSHVKKVSVADLIENMEVQL---SVNHKTAARVYKLKMTLKDT 1306

Query: 334  ELYPPFSDITLEDCLKTMEVLFVGELEEEIQAHLIMLSKISGIKNIVLSAQSGSSKDIDE 155
            E       ++LE+  +T++  F+GELE+ I+ H++ LS++SGIKN   + +  SS + DE
Sbjct: 1307 EF------VSLENMHETLKTTFLGELEDAIENHVLYLSRLSGIKNFASNPKPKSSNEADE 1360

Query: 154  GDTGSKSQQVXXXXXXXXXXXXXXXXXXDLGVDAQKRRRQATDEMDYED 8
             ++G  ++                    DLG D QKR++QATD+MDYED
Sbjct: 1361 DESGLGTENA---GVNDDDDDDDDDKGDDLGSDVQKRKQQATDDMDYED 1406


>ref|XP_006290488.1| hypothetical protein CARUB_v10016563mg [Capsella rubella]
            gi|482559195|gb|EOA23386.1| hypothetical protein
            CARUB_v10016563mg [Capsella rubella]
          Length = 1651

 Score = 1296 bits (3353), Expect = 0.0
 Identities = 703/1282 (54%), Positives = 892/1282 (69%), Gaps = 32/1282 (2%)
 Frame = -1

Query: 3757 VKKCALQLELIIKGDIVGAKXXXXXXXXXXXXXXXXDRVHVKGLPRQVPNY-NSKNLKQH 3581
            VKKC  QL+LI+KGDIV AK                +     G+           +++  
Sbjct: 119  VKKCVSQLKLIMKGDIVSAKQLEVKSDSTSTNSEDIEVSCESGVTNDSSQECEDPDMEDQ 178

Query: 3580 SWTSLQYSEAMSLLDELMTGQKTECKRCGAKNPKITCPNFGWFHVNMPN-KYTRANIIKG 3404
             WTSLQ++E  +++   M     EC +C AKNPK+  P FGW  +   N     AN+I+G
Sbjct: 179  RWTSLQFAEVTAVMKNFMKLTSKECNKCKAKNPKLEKPMFGWVRMKGMNASAVGANLIRG 238

Query: 3403 SKLNKLSMGKAKRNSTGEEENANDSSAMGDVDS-TDAESSGVVYDGTPDSAQKVKGGYLY 3227
             K+ K         ST   EN +DS     +D+ ++AE S        D  ++ K   + 
Sbjct: 239  LKVKK---------STSSVENPDDSG----IDALSEAEDS--------DKEKREKSTEIA 277

Query: 3226 PEFLKQKEFFSGPLLPSEVKNHMKLLWENETQLCSLICDIQQERLSISGMKGNYSMFFIE 3047
             EF KQK+     LLPSEV+  +K LWENE + CS I D+ Q        K +YSMFF+E
Sbjct: 278  KEFEKQKDT-KRDLLPSEVRAILKNLWENEHEYCSFIGDLWQS----GSEKIDYSMFFLE 332

Query: 3046 ALLVPPIKFRPPSKGGDSVMEHPQTVLLNKVMYSNISLCNEHMNSSERSKIVPRWFDLQQ 2867
            ++LVPPIKFRPP+KGGDSVMEHPQTV LNKV+ SNI+L N   N  ++SK++ RW +LQ+
Sbjct: 333  SVLVPPIKFRPPTKGGDSVMEHPQTVGLNKVLLSNITLGNACTNKLDQSKVISRWMNLQE 392

Query: 2866 SINVLFGNSKTAGLRENMATGICQLLEKKEGIFRQKMMGKRVNYACRSVISPDPYLAVNE 2687
            S+NVLF +   +   +   +GICQLLEKKEG+FRQKMMGKRVN+ACRSVISPDPY+AVNE
Sbjct: 393  SVNVLFDSKAASVQSQKDGSGICQLLEKKEGLFRQKMMGKRVNHACRSVISPDPYIAVNE 452

Query: 2686 IGIPPYFALRLTYPERVTPWNVNKLRDAIINGAEVHPGATHYVDKLATVKLPPNRKIRTS 2507
            IGIPP FAL+L YPERVTPWNV KLR+AIING +VHPGATHY DKL+TVKLP + K RT+
Sbjct: 453  IGIPPCFALKLIYPERVTPWNVEKLREAIINGPDVHPGATHYSDKLSTVKLPSSVKERTA 512

Query: 2506 ISRKLHSSRGVVAQPGKNLEHELEGKVVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLS 2327
            I+ KL SSRG   + GK  +   EGKVVYR ++DGD+VLVNRQPTLHKPS+MAH+VRVL 
Sbjct: 513  IANKLLSSRGATTELGKTCDINFEGKVVYRQMRDGDVVLVNRQPTLHKPSLMAHIVRVLK 572

Query: 2326 GEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAFNIVNANNQYILPTSGEPTRGL 2147
            GEKTLR+HYANCSTYNADFDGDEMNVHFPQDEISRAEA+NIVNANNQY  P++G+P R L
Sbjct: 573  GEKTLRLHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYARPSNGDPLRAL 632

Query: 2146 IQDHIVSAVLLTKKDTFLTWEEYNHLLYSSGVSAAARDFFSSKPGQKVSVINSEAEIEPI 1967
            IQDHIVS+VLLTK+DTFL  + +N LL+SSGV+      FS K G+KV++  S+AE+  +
Sbjct: 633  IQDHIVSSVLLTKRDTFLDKDLFNQLLFSSGVTDMVLSSFSGKSGKKVTISASDAELLTV 692

Query: 1966 LPAILKPVPMWTGKQVITSLLNHISRTRGFEPLTVEKSGKIKKEYFGRKS---------- 1817
            +PAILKPVP+WTGKQVIT++LN I  T+G  P TVEK+ K+  ++F  +S          
Sbjct: 693  MPAILKPVPLWTGKQVITTVLNLI--TKGHPPFTVEKATKLPVDFFKCRSREVKPNTGDL 750

Query: 1816 --------------DEANLLIQKNELVHGVIDKAQFGEYGLVHTVQEFYGSDTAGILLSV 1679
                          +E  LLI+KNE V GVIDKAQF ++G+VHTV E YGS+ AG LLSV
Sbjct: 751  TKKKDIDESWKQDLNEDKLLIRKNEFVCGVIDKAQFADFGMVHTVHELYGSNAAGNLLSV 810

Query: 1678 LSRLFTVFLQMHGFTCGVDDLLIVQELDMERMKKLQRSDKIGEEQHAKFIGAK-EGDIDQ 1502
             SRLFT FLQ+HGFTCGVDDL+I++++D ER K+LQ  +K+GE    K  G   +  ID 
Sbjct: 811  FSRLFTAFLQIHGFTCGVDDLIILKDMDEERTKQLQECEKVGERVLRKTFGIDVDRQIDP 870

Query: 1501 MELQVEIEKAIRIKGESAITQLDRMMSSELNDLTSV-VNSELFPKGLLKPFPKNCLSLMT 1325
             +++  IE+ +   GESA+  LDR + ++LN  +S  V ++L   GLLK   KNC+SLMT
Sbjct: 871  QDMRSRIERILYEDGESALASLDRSIVNDLNQCSSKGVMNDLLSDGLLKTPGKNCISLMT 930

Query: 1324 TSGAKGSLVNFTQISSLLGQQQLEGKRVPRMVSGKTLPCFPPWDPASRAGGFITDRFLTG 1145
             SGAKGS VNF QISS LGQQ LEGKRVPRMVSGKTLPCF PWD + RAGGFI+DRFL+G
Sbjct: 931  ISGAKGSKVNFQQISSHLGQQDLEGKRVPRMVSGKTLPCFHPWDWSPRAGGFISDRFLSG 990

Query: 1144 LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKSLECLKVCYDHTVRDADGSVVQFC 965
            LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+K+LE LKV YD TVRDADGS++QF 
Sbjct: 991  LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLESLKVNYDCTVRDADGSIIQFQ 1050

Query: 964  YGEDGVDVHKTSFVTKFDTLAANQ-RVLERLGDHFEDAQMKSDDYIKELPEALEQKTKDF 788
            YGEDGVDVH++SF+ KF  L  NQ  VL+R     ED    S  YI +LP +L++  + F
Sbjct: 1051 YGEDGVDVHRSSFIGKFKELTVNQDMVLQRCS---EDMLSGSSSYISDLPISLKKDAEKF 1107

Query: 787  LSNLTKQQRHSLHLRKRKDFXXXXXXXXXXXLAQPGEPVGVIAAQSVGQPSTQMTLNTFH 608
            +  +   +R +    ++++            LAQPGEPVGV+AAQSVG+PSTQMTLNTFH
Sbjct: 1108 VEAMPMNERIASKFVRQEELLKLVKSKYFESLAQPGEPVGVLAAQSVGEPSTQMTLNTFH 1167

Query: 607  HAGLGAMNVTLGIPRLQEILMRASETIQTPVMTCPLLMGKTWDDAKRLAATLKKVSVADI 428
             AG G MNVTLGIPRLQEILM A+  I+TP+MTCPLL GKT +DA  +   L+K++VADI
Sbjct: 1168 LAGRGEMNVTLGIPRLQEILMTAAADIKTPIMTCPLLKGKTKEDANDITDKLRKITVADI 1227

Query: 427  VESIEVSVVPFSVKKHQVSSIYKLKMKLYRPELYPPFSDITLEDCLKTMEVLFVGELEEE 248
            ++ +E+SVVP+++ K+ + SI+KLK+ LY+PE YP  +DIT ED  +TM+V+F+ +LE+ 
Sbjct: 1228 IKDMELSVVPYTIHKNDICSIHKLKINLYKPEHYPKNTDITEEDWEETMKVVFLRKLEDA 1287

Query: 247  IQAHLIMLSKISGIKNIV--LSAQSGSSKDIDEGDTGSKSQQVXXXXXXXXXXXXXXXXX 74
            I+ H+ ML ++ GI+N V   S  +G+  D D   +G +++                   
Sbjct: 1288 IEIHMKMLHRMRGIRNFVQDTSPTAGNETDNDNSISGKQTED---------DDDGEGTEV 1338

Query: 73   XDLGVDAQKRRRQATDEMDYED 8
             DLG DAQKR++QATDEMDYE+
Sbjct: 1339 DDLGSDAQKRKKQATDEMDYEE 1360


>ref|XP_002876429.1| hypothetical protein ARALYDRAFT_486216 [Arabidopsis lyrata subsp.
            lyrata] gi|297322267|gb|EFH52688.1| hypothetical protein
            ARALYDRAFT_486216 [Arabidopsis lyrata subsp. lyrata]
          Length = 1678

 Score = 1275 bits (3300), Expect = 0.0
 Identities = 695/1279 (54%), Positives = 881/1279 (68%), Gaps = 29/1279 (2%)
 Frame = -1

Query: 3757 VKKCALQLELIIKGDIVGAKXXXXXXXXXXXXXXXXDRVHVKGLPRQVPNYNSKNLKQHS 3578
            V++   QL+LIIKGDIV AK                    V     +       +++   
Sbjct: 132  VERAVSQLKLIIKGDIVSAKQLESNTPTKSDSSDVSCESGVTTDSSE--GCEDSDMEDQR 189

Query: 3577 WTSLQYSEAMSLLDELMTGQKTECKRCGAKNPKITCPNFGWFHVN-MPNKYTRANIIKGS 3401
            WTSLQ++E  +++   M      C RC A NP++  P FGW  +  M      AN+I+G 
Sbjct: 190  WTSLQFAEVTAVMKNFMRLSSKSCNRCKAVNPQLEKPMFGWVRMKAMKGSDIVANVIRGL 249

Query: 3400 KLNKLSMGKAKRNSTGEEENANDSSAMGDVDSTDAESSGVVYDGTPDSAQKVKGGYLYPE 3221
            KL K         ST   EN +D       D +  ++   V DG  D   + K   +  E
Sbjct: 250  KLKK---------STSSVENPDD------FDDSGIDALSEVEDG--DKETREKSTEVVKE 292

Query: 3220 FLKQKEFFSGPLLPSEVKNHMKLLWENETQLCSLICDIQQERLSISGMKGNYSMFFIEAL 3041
            F +        LLP+EV+  +K LWENE   CS I D+ Q        K +YSMFF+E++
Sbjct: 293  FEEHNNSSKRDLLPTEVREILKDLWENEHDFCSFIGDLWQS----GSEKIDYSMFFLESV 348

Query: 3040 LVPPIKFRPPSKGGDSVMEHPQTVLLNKVMYSNISLCNEHMNSSERSKIVPRWFDLQQSI 2861
            LVPPIKFRP +KGGDSVMEHPQTV LNKV+ SNI L N   N  ++SKI+ RW +LQ+S+
Sbjct: 349  LVPPIKFRPSTKGGDSVMEHPQTVGLNKVLGSNIQLGNACTNKLDQSKIISRWMNLQESV 408

Query: 2860 NVLFGNSKTAGLR-ENMATGICQLLEKKEGIFRQKMMGKRVNYACRSVISPDPYLAVNEI 2684
            NVLF +SKTA ++ +   +GICQLLEKKEG+FRQKMMGKRVN+ACRSVISPDPY+AVN+I
Sbjct: 409  NVLF-DSKTATVQSQREGSGICQLLEKKEGLFRQKMMGKRVNHACRSVISPDPYIAVNDI 467

Query: 2683 GIPPYFALRLTYPERVTPWNVNKLRDAIINGAEVHPGATHYVDKLATVKLPPNRKIRTSI 2504
            GIPP FAL+LTYPERVTPWNV KLR+AIING ++HPGATHY DKL+TVKLP   K R +I
Sbjct: 468  GIPPCFALKLTYPERVTPWNVEKLREAIINGPDIHPGATHYSDKLSTVKLPSTEKARRAI 527

Query: 2503 SRKLHSSRGVVAQPGKNLEHELEGKVVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLSG 2324
            +RKL SSRG   + GK  +   EGK V+RH++DGD+VLVNRQPTLHKPS+MAH+VRVL G
Sbjct: 528  ARKLLSSRGATTELGKTCDINFEGKTVHRHMRDGDVVLVNRQPTLHKPSLMAHIVRVLRG 587

Query: 2323 EKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAFNIVNANNQYILPTSGEPTRGLI 2144
            EKTLR+HYANCSTYNADFDGDEMNVHFPQDEISRAEA+NIVNANNQY  P++G+P R LI
Sbjct: 588  EKTLRLHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYARPSNGDPLRALI 647

Query: 2143 QDHIVSAVLLTKKDTFLTWEEYNHLLYSSGVSAAARDFFSSKPGQKVSVINSEAEIEPIL 1964
            QDHIVS+VLLTK+DTFL  + +N LL+SSGV+      FS + G+KV V  S+AE+  + 
Sbjct: 648  QDHIVSSVLLTKRDTFLDKDHFNQLLFSSGVTDMVLSSFSGRSGKKVMVSASDAELLTVT 707

Query: 1963 PAILKPVPMWTGKQVITSLLNHISRTRGFEPLTVEKSGKIKKEYFGRKS----------- 1817
            PAILKPVP+WTGKQVIT++LN I  T+G  P TVEK+ K+  ++F  +S           
Sbjct: 708  PAILKPVPLWTGKQVITAVLNQI--TKGHPPFTVEKATKLPVDFFKCRSREVKPNSGDLT 765

Query: 1816 -------------DEANLLIQKNELVHGVIDKAQFGEYGLVHTVQEFYGSDTAGILLSVL 1676
                         +E  LLI+KNE V GVIDKAQF +YGLVHTV E YGS+ AG LLSV 
Sbjct: 766  KKKKIDESWKQNLNEDKLLIRKNEFVCGVIDKAQFADYGLVHTVHELYGSNAAGNLLSVF 825

Query: 1675 SRLFTVFLQMHGFTCGVDDLLIVQELDMERMKKLQRSDKIGEEQHAKFIGAK-EGDIDQM 1499
            SRLFTVFLQ+HGFTCGVDDL+I++++D ER K+LQ  + +GE    K  G   +  ID  
Sbjct: 826  SRLFTVFLQIHGFTCGVDDLIILKDMDEERTKQLQECENVGERVLRKTFGIDVDVQIDPQ 885

Query: 1498 ELQVEIEKAIRIKGESAITQLDRMMSSELNDLTSV-VNSELFPKGLLKPFPKNCLSLMTT 1322
            +++  IE+ +   GESA+  LDR + ++LN  +S  V ++L   GLLK    NC+SLMT 
Sbjct: 886  DMRSRIERILYEDGESALASLDRSIVNDLNQCSSKGVMNDLLSDGLLKTPGMNCISLMTI 945

Query: 1321 SGAKGSLVNFTQISSLLGQQQLEGKRVPRMVSGKTLPCFPPWDPASRAGGFITDRFLTGL 1142
            SGAKGS VNF QISS LGQQ LEGKRVPRMVSGKTLPCF PWD + RAGGFI+DRFL+GL
Sbjct: 946  SGAKGSKVNFQQISSHLGQQDLEGKRVPRMVSGKTLPCFHPWDWSPRAGGFISDRFLSGL 1005

Query: 1141 RPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKSLECLKVCYDHTVRDADGSVVQFCY 962
            RPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+K+LE LK+ YD TVRDADGS++QF Y
Sbjct: 1006 RPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLESLKINYDCTVRDADGSIIQFQY 1065

Query: 961  GEDGVDVHKTSFVTKFDTLAANQ-RVLERLGDHFEDAQMKSDDYIKELPEALEQKTKDFL 785
            GEDGVDVH++SF+ KF  LA NQ  VL+R     ED    ++ YI +LP +L+   + F+
Sbjct: 1066 GEDGVDVHRSSFIEKFKELAINQDMVLQRCS---EDMLSGANSYISDLPISLKNGAEKFV 1122

Query: 784  SNLTKQQRHSLHLRKRKDFXXXXXXXXXXXLAQPGEPVGVIAAQSVGQPSTQMTLNTFHH 605
              +   +R +    ++++            LAQPGEPVGV+AAQSVG+PSTQMTLNTFH 
Sbjct: 1123 EAMPMNERIASKFVRQEELLKLVKSKFFASLAQPGEPVGVLAAQSVGEPSTQMTLNTFHL 1182

Query: 604  AGLGAMNVTLGIPRLQEILMRASETIQTPVMTCPLLMGKTWDDAKRLAATLKKVSVADIV 425
            AG G MNVTLGIPRLQEILM A+  I+TP+MTCPLL GKT +DA  +   L+K++VADI+
Sbjct: 1183 AGRGEMNVTLGIPRLQEILMTAAADIKTPIMTCPLLKGKTKEDANDITGKLRKITVADII 1242

Query: 424  ESIEVSVVPFSVKKHQVSSIYKLKMKLYRPELYPPFSDITLEDCLKTMEVLFVGELEEEI 245
            +S+++SVVP++V K++V SI+KLK+ LY+PE YP  +DIT +D  +TM V+F+ +LE+ I
Sbjct: 1243 KSMDLSVVPYTVYKNEVCSIHKLKINLYKPEHYPKHTDITEKDWEETMTVVFLRKLEDAI 1302

Query: 244  QAHLIMLSKISGIKNIVLSAQSGSSKDIDEGDTGSKSQQVXXXXXXXXXXXXXXXXXXDL 65
            + H+ ML +I GI N     ++G+  D D+  +G +++                    DL
Sbjct: 1303 EIHMKMLHRIRGICN-DKGPEAGNETDNDDSVSGKQNKD-------DGDDDGEGTEVDDL 1354

Query: 64   GVDAQKRRRQATDEMDYED 8
            G DAQK+++Q TDEMDYE+
Sbjct: 1355 GSDAQKQKKQVTDEMDYEE 1373