BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia22_contig00018401
         (1156 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Th...   379   e-102
gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis]       365   3e-98
ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   353   1e-94
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]      350   8e-94
gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]      349   1e-93
ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [...   346   1e-92
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V...   342   2e-91
ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   339   1e-90
ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [A...   330   9e-88
ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   325   3e-86
ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   323   6e-86
ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis...   317   8e-84
ref|XP_004498237.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   313   7e-83
ref|XP_004498236.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   313   7e-83
gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thali...   310   1e-81
ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis tha...   310   1e-81
gb|EYU28878.1| hypothetical protein MIMGU_mgv1a000505mg [Mimulus...   307   5e-81
ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Caps...   307   5e-81
emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis hall...   306   1e-80
ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis ...   301   3e-79

>ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao]
            gi|590697846|ref|XP_007045553.1| RNA-dependent RNA
            polymerase 1 isoform 1 [Theobroma cacao]
            gi|590697850|ref|XP_007045554.1| RNA-dependent RNA
            polymerase 1 isoform 1 [Theobroma cacao]
            gi|508709487|gb|EOY01384.1| RNA-dependent RNA polymerase
            1 isoform 1 [Theobroma cacao] gi|508709488|gb|EOY01385.1|
            RNA-dependent RNA polymerase 1 isoform 1 [Theobroma
            cacao] gi|508709489|gb|EOY01386.1| RNA-dependent RNA
            polymerase 1 isoform 1 [Theobroma cacao]
          Length = 1109

 Score =  379 bits (974), Expect = e-102
 Identities = 190/318 (59%), Positives = 241/318 (75%)
 Frame = +3

Query: 189  MGRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQTKTTRSNPRSFAVVQFTSPES 368
            MG+TIQVS FPS+V AE VK FLE YTG+ TVYALK+RQ K   +  R++A+VQFT    
Sbjct: 1    MGKTIQVSRFPSNVHAEEVKTFLELYTGKETVYALKIRQQK---NGGRAYAIVQFTKSTD 57

Query: 369  AEQISSLINQRLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSLWK 548
            AE I  L NQRLYYG+SYLK  EM+ DIVPKPRT + ++E   LHFGCQ+S EKF  LW+
Sbjct: 58   AELIIRLTNQRLYYGSSYLKAREMENDIVPKPRTFLHTMEGVTLHFGCQVSNEKFYVLWE 117

Query: 549  GLDAILNVGFGLRKLEFLLTHRHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVSAA 728
             +D  +N G G+RKL+FLL+H  +EY+LDL Y++IWQI+L  PR++  ++K+LLIQ+  A
Sbjct: 118  EVDVTVNFGMGMRKLQFLLSHHCVEYRLDLFYENIWQIELHRPRNQ--TSKYLLIQLFGA 175

Query: 729  PRIFKKPLCSSGDIYGDPTFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELPYNCKLP 908
            PRI++K + SSG ++ +P  NYF D PDDQWVR TDFT SSCIGQSS +CLELPY  +LP
Sbjct: 176  PRIYEKDVRSSGLVFENPLLNYFMDVPDDQWVRTTDFTQSSCIGQSSVLCLELPYYLQLP 235

Query: 909  GIRENFHNYKEDEGRFLLESGSTFSHRMDLVPIVEPPPHGQELPYDILFKINSLVQNGYL 1088
              RENF  YKE EG+F+LESGS++S  ++LVPIV  P  G +LPY+ILFKIN LVQNG +
Sbjct: 236  NFRENFAYYKESEGKFVLESGSSYSRNLNLVPIV-GPSLGIDLPYEILFKINLLVQNGCI 294

Query: 1089 SGPTLDSTFFRLVHPSNI 1142
             GP LD+ F+RLV+P  I
Sbjct: 295  PGPALDANFYRLVNPCRI 312


>gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis]
          Length = 1133

 Score =  365 bits (936), Expect = 3e-98
 Identities = 188/318 (59%), Positives = 235/318 (73%)
 Frame = +3

Query: 189  MGRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQTKTTRSNPRSFAVVQFTSPES 368
            MG+TIQ+SGFPS VSAE+VK FLE +TG GTVYA+K+R TK   S  RS+A+VQF + E+
Sbjct: 1    MGKTIQLSGFPSHVSAESVKEFLEGHTGRGTVYAIKIRPTKNGGS--RSYAIVQFMTVET 58

Query: 369  AEQISSLINQRLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSLWK 548
            AE I  L N RL+YG SYL    M+RDIVPKPR  + SL+   LHFGCQIS+EKFS LW+
Sbjct: 59   AELIIRLANPRLWYGRSYLLARVMERDIVPKPRATLYSLQNVTLHFGCQISKEKFSFLWR 118

Query: 549  GLDAILNVGFGLRKLEFLLTHRHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVSAA 728
              +  ++ G GLR+L F LT+  +EY+L L Y+++WQI+L  PR +  + K+LLIQ+  A
Sbjct: 119  VGNVSVDFGLGLRRLNFYLTYGPVEYRLQLLYENVWQIELHRPRGQ--TAKYLLIQLLGA 176

Query: 729  PRIFKKPLCSSGDIYGDPTFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELPYNCKLP 908
            PR+++K +  S DI  +P FNYF+DTPDDQWVRATDFT S CIG SSA+ LELPY   LP
Sbjct: 177  PRVYEKEVRISFDILENPLFNYFKDTPDDQWVRATDFTESCCIGHSSALYLELPYGVDLP 236

Query: 909  GIRENFHNYKEDEGRFLLESGSTFSHRMDLVPIVEPPPHGQELPYDILFKINSLVQNGYL 1088
             +RENF  YKE E RF+LESGS+FS  +DLVPIV  PP G  LP++ +FKIN L+QNG L
Sbjct: 237  DLRENFVYYKESEERFILESGSSFSRNLDLVPIV-GPPSGINLPFETVFKINMLLQNGCL 295

Query: 1089 SGPTLDSTFFRLVHPSNI 1142
            SGPTLD  F+RLV P  I
Sbjct: 296  SGPTLDVDFYRLVDPQRI 313


>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
          Length = 1132

 Score =  353 bits (905), Expect = 1e-94
 Identities = 179/322 (55%), Positives = 236/322 (73%), Gaps = 2/322 (0%)
 Frame = +3

Query: 189  MGRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQTKTTRSNPRSFAVVQFTSPES 368
            MG+TIQV GFP+ V+AE VK FLE+ TG GTVYALKLR  K  +   R +A+VQFT+ E+
Sbjct: 1    MGKTIQVFGFPAGVTAEAVKDFLESKTGGGTVYALKLRTPK--KGVGRLYAIVQFTTKEA 58

Query: 369  AEQISSLI--NQRLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSL 542
            A+ I SL    ++L+YG SYL    M++D VP+PRT M ++E   LHFGC+IS EKF+ L
Sbjct: 59   ADTIISLACRTEKLWYGRSYLNARRMEQDTVPRPRTFMHTMEHIELHFGCKISNEKFAVL 118

Query: 543  WKGLDAILNVGFGLRKLEFLLTHRHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVS 722
            W+G++  +N GFG+RK+ FLL+H   EY+L+L Y++IW+I+L  PR ++  TK+LLIQ+ 
Sbjct: 119  WRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQM--TKYLLIQLL 176

Query: 723  AAPRIFKKPLCSSGDIYGDPTFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELPYNCK 902
             APRIF+K + S   +Y  P FN+F++ PDDQWVR TDFT S+ IGQS+ +C+ELPY  +
Sbjct: 177  GAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPYRLE 236

Query: 903  LPGIRENFHNYKEDEGRFLLESGSTFSHRMDLVPIVEPPPHGQELPYDILFKINSLVQNG 1082
            LP  +ENF  YKE E RF+LE+GS +S  +DLVPIV  PP G  LPY+ILFKIN LVQNG
Sbjct: 237  LPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIV-GPPDGIALPYEILFKINLLVQNG 295

Query: 1083 YLSGPTLDSTFFRLVHPSNIPV 1148
             ++GP LDS F+RLV P   PV
Sbjct: 296  CVAGPLLDSNFYRLVDPYRAPV 317


>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score =  350 bits (897), Expect = 8e-94
 Identities = 182/315 (57%), Positives = 229/315 (72%)
 Frame = +3

Query: 189  MGRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQTKTTRSNPRSFAVVQFTSPES 368
            MG+TIQV GF S VSA  VK FLE YTG  TVYALK+RQ K    + R+FA+VQFT    
Sbjct: 1    MGKTIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKIRQHK---KSGRAFAIVQFTRSSD 57

Query: 369  AEQISSLINQRLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSLWK 548
            A  I  L NQRLYYG SYLK  EM+ DIVPKPR  + ++E   ++FGCQ+SEEKF  LWK
Sbjct: 58   AGLIIRLANQRLYYGRSYLKAREMETDIVPKPRVFLHTMERVTVNFGCQVSEEKFYVLWK 117

Query: 549  GLDAILNVGFGLRKLEFLLTHRHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVSAA 728
              +  LN G G+RKLEFLL++   +YKL+L Y++IWQI+LR P S+  ++K LLIQ+  A
Sbjct: 118  ADNVTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQ--TSKHLLIQLFGA 175

Query: 729  PRIFKKPLCSSGDIYGDPTFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELPYNCKLP 908
            PRI++K + +S  ++ DP  NYF+D PDDQWVR TDFT S+CIGQSS + LELP+N +LP
Sbjct: 176  PRIYEKEVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLWLELPHNLQLP 235

Query: 909  GIRENFHNYKEDEGRFLLESGSTFSHRMDLVPIVEPPPHGQELPYDILFKINSLVQNGYL 1088
              RENF  YKE+EGR +LESGS++S  + LVPIV  P    +LP++ILFK+N LVQNG +
Sbjct: 236  NFRENFAYYKENEGRLVLESGSSYSCNLSLVPIV-CPSRVIDLPFEILFKVNLLVQNGCI 294

Query: 1089 SGPTLDSTFFRLVHP 1133
             GP LD TF+RLV P
Sbjct: 295  PGPALDDTFYRLVDP 309


>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score =  349 bits (896), Expect = 1e-93
 Identities = 181/315 (57%), Positives = 228/315 (72%)
 Frame = +3

Query: 189  MGRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQTKTTRSNPRSFAVVQFTSPES 368
            MG+TIQV GF S VSA  VK FLE YTG  TVYALK+RQ K    + R+FA+VQFT    
Sbjct: 1    MGKTIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKIRQHK---KSGRAFAIVQFTRSSD 57

Query: 369  AEQISSLINQRLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSLWK 548
            A  I  L NQRLYYG SYLK  EM+ DIVPKPR  + ++E   ++F C +SEEKF  LWK
Sbjct: 58   AGLIIRLANQRLYYGRSYLKAREMETDIVPKPRVFLHTMERVTVNFDCHVSEEKFYVLWK 117

Query: 549  GLDAILNVGFGLRKLEFLLTHRHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVSAA 728
              +  LN G G+RKLEFLL++   +YKL+L Y++IWQI+LR P S+  ++K LLIQ+  A
Sbjct: 118  ADNVTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQ--TSKHLLIQLFGA 175

Query: 729  PRIFKKPLCSSGDIYGDPTFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELPYNCKLP 908
            PRI++K + +S  ++ DP  NYF+D PDDQWVR TDFT S+CIGQSS +CLELP+N +LP
Sbjct: 176  PRIYEKEVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLCLELPHNLQLP 235

Query: 909  GIRENFHNYKEDEGRFLLESGSTFSHRMDLVPIVEPPPHGQELPYDILFKINSLVQNGYL 1088
              RENF  YKE+EGR +LESGS++S  + LVPIV  P    +LP++ILFK+N LVQNG +
Sbjct: 236  NFRENFAYYKENEGRLVLESGSSYSCNLSLVPIV-CPSRVIDLPFEILFKVNLLVQNGCI 294

Query: 1089 SGPTLDSTFFRLVHP 1133
             GP LD TF+RLV P
Sbjct: 295  PGPALDDTFYRLVDP 309


>ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa]
            gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
            family protein [Populus trichocarpa]
          Length = 1133

 Score =  346 bits (887), Expect = 1e-92
 Identities = 173/320 (54%), Positives = 231/320 (72%)
 Frame = +3

Query: 189  MGRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQTKTTRSNPRSFAVVQFTSPES 368
            M +T++VSGFPSS +A  V+VFLE++TG GTV ALK+R+ +T     R +A+VQFT+  +
Sbjct: 1    MSKTVKVSGFPSSTTAGAVQVFLESHTGGGTVEALKIREIRT--GGARKYAIVQFTTTRA 58

Query: 369  AEQISSLINQRLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSLWK 548
            AEQI SL N RL+YG SYL    M RDI+P+PR+ + ++E   LHFG Q S+EKFS++W 
Sbjct: 59   AEQIISLANPRLWYGHSYLNARPMDRDIIPQPRSFLHTMESVTLHFGYQTSKEKFSAVWS 118

Query: 549  GLDAILNVGFGLRKLEFLLTHRHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVSAA 728
            G +  +N G G+RKL F L+H   EYKL+L +++IWQI+L  PR +  + K+LLIQ+  A
Sbjct: 119  GNNVSVNFGLGMRKLHFFLSHNLAEYKLNLLFENIWQIELHRPRGQ--TVKYLLIQLYGA 176

Query: 729  PRIFKKPLCSSGDIYGDPTFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELPYNCKLP 908
            PRI+++ + SS +++ DP  NYFRD PD+QWVR TDFT S  IG SS++CLELP + +LP
Sbjct: 177  PRIYERDVPSSSNVFEDPLLNYFRDVPDEQWVRTTDFTPSCGIGHSSSLCLELPNHLQLP 236

Query: 909  GIRENFHNYKEDEGRFLLESGSTFSHRMDLVPIVEPPPHGQELPYDILFKINSLVQNGYL 1088
               ENF  YKE+EG F+LESG TFS   DLVPIV  P  G  LPY+ILF++N LVQNG L
Sbjct: 237  NFNENFFYYKENEGTFVLESGLTFSRNPDLVPIV-GPSSGVNLPYNILFRVNLLVQNGCL 295

Query: 1089 SGPTLDSTFFRLVHPSNIPV 1148
            +G  LD  F+RLV P+ +PV
Sbjct: 296  AGSMLDDIFYRLVDPNRMPV 315


>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
          Length = 1121

 Score =  342 bits (877), Expect = 2e-91
 Identities = 175/321 (54%), Positives = 231/321 (71%), Gaps = 1/321 (0%)
 Frame = +3

Query: 189  MGRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQTKTTRSNPRSFAVVQFTSPES 368
            M +TIQV GFPS VSA+ +K FLE YTGEGT+ AL+++Q ++  S   + A VQFTS E 
Sbjct: 1    MSKTIQVYGFPSIVSADEIKEFLEKYTGEGTIEALEIKQPRSGAS--MTHAKVQFTSFEL 58

Query: 369  AEQISSLINQRLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSLWK 548
            AE I +L  ++++YG +YLK  EM  DI+PKPR  + S++   LHFGCQ+S+E+F  LWK
Sbjct: 59   AEFIITLCKKKVWYGRNYLKAREMDLDIIPKPRAFLHSMDRITLHFGCQMSDERFCVLWK 118

Query: 549  GLDAILNVGFGLRKLEFLLTHRHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVSAA 728
             ++  +  G GLRK  F L+H   EYKL+LSY++IWQIQL+HPR ++  TKFLLIQ+  A
Sbjct: 119  AINVSVKFGSGLRKFYFFLSHGSEEYKLELSYENIWQIQLQHPRGQI--TKFLLIQLLGA 176

Query: 729  PRIFKKPLCSSGDIYGDPTFN-YFRDTPDDQWVRATDFTTSSCIGQSSAICLELPYNCKL 905
            P+I++K +         P  + YF++ PDDQWVR  DFT S  IGQS A+CLELPY  +L
Sbjct: 177  PQIYEKDV---------PVLSYYFKEAPDDQWVREIDFTPSCFIGQSFALCLELPYGSQL 227

Query: 906  PGIRENFHNYKEDEGRFLLESGSTFSHRMDLVPIVEPPPHGQELPYDILFKINSLVQNGY 1085
            P  RENF  YKE++G+F+LESGS++SH + LVPI+  PP G  LP+ ILFKIN+LVQNG 
Sbjct: 228  PNFRENFAYYKENDGKFILESGSSYSHNLHLVPIL-GPPQGSSLPFQILFKINTLVQNGC 286

Query: 1086 LSGPTLDSTFFRLVHPSNIPV 1148
            LSGPTLD++FFRLV P   P+
Sbjct: 287  LSGPTLDTSFFRLVDPERFPI 307


>ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Glycine
            max] gi|571439308|ref|XP_006574822.1| PREDICTED:
            RNA-dependent RNA polymerase 1-like isoform X2 [Glycine
            max] gi|571439310|ref|XP_006574823.1| PREDICTED:
            RNA-dependent RNA polymerase 1-like isoform X3 [Glycine
            max]
          Length = 1125

 Score =  339 bits (869), Expect = 1e-90
 Identities = 171/322 (53%), Positives = 231/322 (71%), Gaps = 3/322 (0%)
 Frame = +3

Query: 189  MGRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQTKTTRSNPRSFAVVQFTSPES 368
            MG+TI++ GFP+SV+   VK F+E YTGEGTV+A+KLR  K     PR+FA++QFT+  S
Sbjct: 1    MGKTIELYGFPTSVNVSDVKTFVEQYTGEGTVFAIKLRHGKGRV--PRAFAIIQFTTANS 58

Query: 369  AEQISSLIN---QRLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSS 539
            A  + S  N   + L YGTSYLK  EM+RDIVP+PR  + SL+   L FGCQIS+ +FS 
Sbjct: 59   ATSMMSRANNILRTLRYGTSYLKAREMERDIVPRPRVFLHSLDDVKLSFGCQISKGRFSV 118

Query: 540  LWKGLDAILNVGFGLRKLEFLLTHRHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQV 719
            LWK  D I+N G G+RK+ FL +H +++YKL+LSY++IW+I+L  PR+   +T++LLIQ+
Sbjct: 119  LWKKQDVIVNFGSGMRKMHFLFSHNNVQYKLELSYENIWKIELHRPRNE--TTRYLLIQL 176

Query: 720  SAAPRIFKKPLCSSGDIYGDPTFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELPYNC 899
              APR+F+  + +S +I+ DP FN+F+D PD+QW+RA DFT  S IGQSSAICLELP   
Sbjct: 177  LGAPRVFENDVPTSTNIFDDPLFNFFKDAPDEQWIRAIDFTPESRIGQSSAICLELPNGR 236

Query: 900  KLPGIRENFHNYKEDEGRFLLESGSTFSHRMDLVPIVEPPPHGQELPYDILFKINSLVQN 1079
            +LP  RENF  Y+E E ++ L++G  FS    LVPIV  PP G ++ YDILFK+NSLVQ+
Sbjct: 237  QLPNFRENFAYYEESERQYTLQTGVPFSQNWGLVPIV-APPLGVKISYDILFKVNSLVQH 295

Query: 1080 GYLSGPTLDSTFFRLVHPSNIP 1145
              L+GP LD  F+RLV P  +P
Sbjct: 296  ACLAGPALDGDFYRLVDPRRMP 317


>ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [Amborella trichopoda]
            gi|548853371|gb|ERN11375.1| hypothetical protein
            AMTR_s00176p00039530 [Amborella trichopoda]
          Length = 1210

 Score =  330 bits (845), Expect = 9e-88
 Identities = 173/315 (54%), Positives = 221/315 (70%), Gaps = 2/315 (0%)
 Frame = +3

Query: 192  GRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQTKTTRSNPRSFAVVQFTSPESA 371
            GRT+QVSGFP    AE VK FLE+ TG GTVY LK+R  K+ + N R FA+VQFT+ +SA
Sbjct: 75   GRTVQVSGFPQGTCAEAVKKFLESITGFGTVYHLKIRIHKS-KPNSRVFAIVQFTTSKSA 133

Query: 372  EQISSLINQ--RLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSLW 545
            E I SL  Q   LY+G SY+ V  M+ DIVP PR     LE   L+FG QISEE F+ LW
Sbjct: 134  EVIYSLAPQPKSLYFGNSYVIVRYMENDIVPNPRVTYHVLESIQLYFGNQISEESFAILW 193

Query: 546  KGLDAILNVGFGLRKLEFLLTHRHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVSA 725
               +  +  GFGL+K+ F L H  ++YKLDL Y++IWQIQLR P +    T++L++Q+  
Sbjct: 194  SNTNVKVEFGFGLKKIFFYLAHTGVDYKLDLYYENIWQIQLRRPGTE--GTRYLVLQMQG 251

Query: 726  APRIFKKPLCSSGDIYGDPTFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELPYNCKL 905
            APRIF+KPL  S DIY  P FNY++D PD+QWVR+ DFT S  IGQSS++CL LP   ++
Sbjct: 252  APRIFQKPLSFSSDIYDSPLFNYYKDFPDEQWVRSIDFTPSCSIGQSSSLCLALPNGTRI 311

Query: 906  PGIRENFHNYKEDEGRFLLESGSTFSHRMDLVPIVEPPPHGQELPYDILFKINSLVQNGY 1085
            P IRENF  YKE  G F L++GS+FSH + LVPIV PP    +LPY ILF++NSLVQNG+
Sbjct: 312  PNIRENFAYYKEIGGAFNLKTGSSFSHSLHLVPIVHPPDQ-IKLPYKILFRVNSLVQNGF 370

Query: 1086 LSGPTLDSTFFRLVH 1130
            L GPTLD+ F+ L++
Sbjct: 371  LVGPTLDTEFYNLLN 385


>ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
          Length = 1109

 Score =  325 bits (832), Expect = 3e-86
 Identities = 175/320 (54%), Positives = 224/320 (70%)
 Frame = +3

Query: 189  MGRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQTKTTRSNPRSFAVVQFTSPES 368
            MG+TIQV G PS+VSA  +K FLE YTGEGT+ AL+++Q K+  S   + A VQFTS   
Sbjct: 1    MGKTIQVYGVPSNVSANEIKEFLEKYTGEGTIEALEIKQPKSGVS--MTHAKVQFTSLRL 58

Query: 369  AEQISSLINQRLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSLWK 548
            AE I SL  Q L+YG +YLK  EM  DI+PKPRT + S++   LHFG Q+S E+F  LWK
Sbjct: 59   AELIISLAKQ-LWYGGNYLKAREMDLDIIPKPRTFLHSMDRITLHFGYQMSNERFCVLWK 117

Query: 549  GLDAILNVGFGLRKLEFLLTHRHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVSAA 728
             ++  +  GFGLRK  F L+H   EYKL+LS ++IWQIQLR PR +  +TKFLLIQ+  A
Sbjct: 118  AINVSVKFGFGLRKFYFFLSHGSEEYKLELSCENIWQIQLREPRGQ--NTKFLLIQLLDA 175

Query: 729  PRIFKKPLCSSGDIYGDPTFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELPYNCKLP 908
            P+I++K + +          +YF++TPDDQWVR  DFT S  IGQSSA+CLELP+  +LP
Sbjct: 176  PQIYEKDVSA---------LSYFKETPDDQWVREIDFTPSCSIGQSSALCLELPHGSQLP 226

Query: 909  GIRENFHNYKEDEGRFLLESGSTFSHRMDLVPIVEPPPHGQELPYDILFKINSLVQNGYL 1088
               ENF  YKE++ +F+LESG++FS  + LVPIV  PP G  LP+ ILFKIN+LVQNG L
Sbjct: 227  NFCENFARYKENDRKFILESGASFSGNLHLVPIV-GPPQGSNLPFKILFKINTLVQNGCL 285

Query: 1089 SGPTLDSTFFRLVHPSNIPV 1148
            SGPTLD+ FFR V P  I +
Sbjct: 286  SGPTLDTNFFRWVDPQRINI 305


>ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Fragaria vesca subsp.
            vesca]
          Length = 1119

 Score =  323 bits (829), Expect = 6e-86
 Identities = 175/318 (55%), Positives = 221/318 (69%)
 Frame = +3

Query: 189  MGRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQTKTTRSNPRSFAVVQFTSPES 368
            MG+TIQ+ GFPS  +AE +K FLE +TGEG+V+ALKLR  K   S  R +A++QF S   
Sbjct: 1    MGKTIQLHGFPSGQTAENIKEFLEKHTGEGSVFALKLRPAK---SGGRFYAIIQFQSISQ 57

Query: 369  AEQISSLINQRLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSLWK 548
            AE+I SL N RL+YG SYL       DIVPKPRT + SL    LH GCQ++++KFS LW 
Sbjct: 58   AEKIISLANARLWYGRSYLNA-RPAHDIVPKPRTFLHSLRDLVLHVGCQVAKDKFSVLWG 116

Query: 549  GLDAILNVGFGLRKLEFLLTHRHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVSAA 728
              +  ++ GFG+R L+F L +R   Y+L LSY++IWQI+L H R R  S K+L+IQ+   
Sbjct: 117  TAEVSVDFGFGMRNLQFRLLYRQKVYRLQLSYENIWQIELHHQRGR--SAKYLVIQLYGN 174

Query: 729  PRIFKKPLCSSGDIYGDPTFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELPYNCKLP 908
            PRI+++ +CSSG   G    NYFRD PDD WVR TDFT  SCIGQSS++CL L  + +LP
Sbjct: 175  PRIYQQEVCSSGG-NGYEDMNYFRD-PDD-WVRTTDFTPGSCIGQSSSLCLVLTSDGELP 231

Query: 909  GIRENFHNYKEDEGRFLLESGSTFSHRMDLVPIVEPPPHGQELPYDILFKINSLVQNGYL 1088
               ENF  YK+ +G+F+LE+GSTFS   DLVPIV  P  G +LPYDILFKIN LVQ G L
Sbjct: 232  DFEENFAYYKKTDGQFILENGSTFSRNRDLVPIVGSPA-GIDLPYDILFKINLLVQQGCL 290

Query: 1089 SGPTLDSTFFRLVHPSNI 1142
            SGPTLD+ F+RLV P  I
Sbjct: 291  SGPTLDNNFYRLVDPRRI 308


>ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis sativus]
            gi|316989899|gb|ADU77015.1| RNA-dependent RNA polymerase
            1a [Cucumis sativus]
          Length = 1130

 Score =  317 bits (811), Expect = 8e-84
 Identities = 168/314 (53%), Positives = 220/314 (70%), Gaps = 1/314 (0%)
 Frame = +3

Query: 189  MGRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQTKTTRSNPRSFAVVQFTSPES 368
            MG+TI +SGFPS V+A+ VK FLE +TG GTVYA+K+R  K  R   R +A+VQFTS   
Sbjct: 1    MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPK--RGGGRLYAIVQFTSATQ 58

Query: 369  AEQISSLINQRLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSLWK 548
            AE I SL NQRL+YG+SYLK    + DIVPKPRT M +LE   L FGCQ+S EKF  LW+
Sbjct: 59   AELIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWE 118

Query: 549  GLDAILNVGFGLRKLEFLLTHRHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVSAA 728
            G   ++  G G+RK+ F L ++ +EY+L+LSY+ IWQIQL  PR +  S K+LLIQ+S A
Sbjct: 119  GNVDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQ--SMKYLLIQLSGA 176

Query: 729  PRIFKKPLCSSGDIYGDPTFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELPYNCKLP 908
            PRI+KK   +SG I+ +P  N+F++  DDQWVR TDFT+S  IGQSS++CL+LP   +LP
Sbjct: 177  PRIYKKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLP 236

Query: 909  GIRENFHNYKEDEGRF-LLESGSTFSHRMDLVPIVEPPPHGQELPYDILFKINSLVQNGY 1085
              ++NF  Y+E E  F L++  + FS   DL PIV+   H   LPY ILFKIN+LVQ G 
Sbjct: 237  PFKQNFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSH--VLPYKILFKINALVQYGC 294

Query: 1086 LSGPTLDSTFFRLV 1127
            +  P LD++F+RLV
Sbjct: 295  IPWPLLDASFYRLV 308


>ref|XP_004498237.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X2 [Cicer
            arietinum]
          Length = 1100

 Score =  313 bits (803), Expect = 7e-83
 Identities = 163/323 (50%), Positives = 226/323 (69%), Gaps = 5/323 (1%)
 Frame = +3

Query: 195  RTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQTKTTRSNPRSFAVVQFTSPESAE 374
            +TI++ GFP+SV    VK F+E +TGEG+V A+K+R+ K      R++A++QF +   A 
Sbjct: 5    KTIELYGFPTSVVVPDVKRFVERFTGEGSVVAIKIREGKARVQ--RAYAIIQFNTANQAT 62

Query: 375  QISSLINQR---LYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSLW 545
             + SL N+    L YG SYLK+ EM RDIVP PRT + SL+   L+FGCQIS+E+FS LW
Sbjct: 63   HMLSLHNRSSTMLRYGNSYLKIREMVRDIVPNPRTYLESLDDVTLYFGCQISKERFSILW 122

Query: 546  KGLDAILNVGFGLRKLEFLLTHRHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVSA 725
            +  D  +++  G+RK  F + H + ++K DLSY++IW+I+   P  +  + K+LLIQ+  
Sbjct: 123  RKRDVSVDLSAGMRKWRFCMCHDNKKFKFDLSYENIWKIEQYQPWGK--TAKYLLIQLIG 180

Query: 726  APRIFKK--PLCSSGDIYGDPTFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELPYNC 899
            APRIF+   P  +S ++Y DP  NYF+++PDDQW+RA DFT  +CIGQSSAICLELP + 
Sbjct: 181  APRIFELYVPTSTSTNVYEDPLKNYFKESPDDQWIRAVDFTPFNCIGQSSAICLELPCDR 240

Query: 900  KLPGIRENFHNYKEDEGRFLLESGSTFSHRMDLVPIVEPPPHGQELPYDILFKINSLVQN 1079
              P IRE F +Y+E+EG++ LESGS FSH +D+VPIV  PP G  +P+DILFK+NSLVQ+
Sbjct: 241  DFPNIREYFVHYQENEGQYTLESGSPFSHNLDVVPIV-APPQGIYIPFDILFKVNSLVQH 299

Query: 1080 GYLSGPTLDSTFFRLVHPSNIPV 1148
            G LSG  LD+ F+ LV P  I V
Sbjct: 300  GCLSGSELDNAFYCLVDPLRINV 322


>ref|XP_004498236.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Cicer
            arietinum]
          Length = 1126

 Score =  313 bits (803), Expect = 7e-83
 Identities = 163/323 (50%), Positives = 226/323 (69%), Gaps = 5/323 (1%)
 Frame = +3

Query: 195  RTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQTKTTRSNPRSFAVVQFTSPESAE 374
            +TI++ GFP+SV    VK F+E +TGEG+V A+K+R+ K      R++A++QF +   A 
Sbjct: 5    KTIELYGFPTSVVVPDVKRFVERFTGEGSVVAIKIREGKARVQ--RAYAIIQFNTANQAT 62

Query: 375  QISSLINQR---LYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSLW 545
             + SL N+    L YG SYLK+ EM RDIVP PRT + SL+   L+FGCQIS+E+FS LW
Sbjct: 63   HMLSLHNRSSTMLRYGNSYLKIREMVRDIVPNPRTYLESLDDVTLYFGCQISKERFSILW 122

Query: 546  KGLDAILNVGFGLRKLEFLLTHRHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVSA 725
            +  D  +++  G+RK  F + H + ++K DLSY++IW+I+   P  +  + K+LLIQ+  
Sbjct: 123  RKRDVSVDLSAGMRKWRFCMCHDNKKFKFDLSYENIWKIEQYQPWGK--TAKYLLIQLIG 180

Query: 726  APRIFKK--PLCSSGDIYGDPTFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELPYNC 899
            APRIF+   P  +S ++Y DP  NYF+++PDDQW+RA DFT  +CIGQSSAICLELP + 
Sbjct: 181  APRIFELYVPTSTSTNVYEDPLKNYFKESPDDQWIRAVDFTPFNCIGQSSAICLELPCDR 240

Query: 900  KLPGIRENFHNYKEDEGRFLLESGSTFSHRMDLVPIVEPPPHGQELPYDILFKINSLVQN 1079
              P IRE F +Y+E+EG++ LESGS FSH +D+VPIV  PP G  +P+DILFK+NSLVQ+
Sbjct: 241  DFPNIREYFVHYQENEGQYTLESGSPFSHNLDVVPIV-APPQGIYIPFDILFKVNSLVQH 299

Query: 1080 GYLSGPTLDSTFFRLVHPSNIPV 1148
            G LSG  LD+ F+ LV P  I V
Sbjct: 300  GCLSGSELDNAFYCLVDPLRINV 322


>gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
          Length = 1107

 Score =  310 bits (793), Expect = 1e-81
 Identities = 161/316 (50%), Positives = 218/316 (68%), Gaps = 2/316 (0%)
 Frame = +3

Query: 189  MGRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQTKTTRSNPRSFAVVQFTSPES 368
            MG+TIQV GFP+ VSAE VK FLE  TG GTVYA+K+RQ K  +  PR +A+VQFTS   
Sbjct: 1    MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPK--KGGPRVYAIVQFTSERH 58

Query: 369  AEQISSLINQRLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSLWK 548
               I +   +RLYYG SYLK  E+++DIVPKPR  + ++    + FGCQ+S +KF +LW 
Sbjct: 59   TRLIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWS 118

Query: 549  GLDAILNVGFGLRKLEFLLTHRHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVSAA 728
              D  ++ G G+RKL F  +    +Y+L+LSY++IWQI L  P+ R  S+KFL+IQV  A
Sbjct: 119  AQDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGR--SSKFLVIQVIGA 176

Query: 729  PRIFKKPLCSSGDIYGDPTFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELPYNCKLP 908
            P+IF+K       ++G    +++ D  D+QW+R TDFT+SSCIGQS+A CLELP +  +P
Sbjct: 177  PKIFEKEDQPINLLFG--IMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVP 234

Query: 909  GIRENFHNYKEDE-GRFLLESGSTFSHRMD-LVPIVEPPPHGQELPYDILFKINSLVQNG 1082
              RENF NY E     FL+ESGS++S   + LVP+V+PPP G  LP++ILFK+N+LVQN 
Sbjct: 235  DFRENFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPP-GFSLPFEILFKLNTLVQNA 293

Query: 1083 YLSGPTLDSTFFRLVH 1130
             LSGP LD  F+RL++
Sbjct: 294  CLSGPALDLDFYRLLN 309


>ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
            gi|75335341|sp|Q9LQV2.1|RDR1_ARATH RecName:
            Full=RNA-dependent RNA polymerase 1; Short=AtRDRP1;
            AltName: Full=RNA-directed RNA polymerase 1
            gi|8778232|gb|AAF79241.1|AC006917_26 F10B6.19
            [Arabidopsis thaliana] gi|110737376|dbj|BAF00633.1|
            putative RNA-directed RNA polymerase [Arabidopsis
            thaliana] gi|332191105|gb|AEE29226.1| RNA-dependent RNA
            polymerase 1 [Arabidopsis thaliana]
          Length = 1107

 Score =  310 bits (793), Expect = 1e-81
 Identities = 161/316 (50%), Positives = 218/316 (68%), Gaps = 2/316 (0%)
 Frame = +3

Query: 189  MGRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQTKTTRSNPRSFAVVQFTSPES 368
            MG+TIQV GFP+ VSAE VK FLE  TG GTVYA+K+RQ K  +  PR +A+VQFTS   
Sbjct: 1    MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPK--KGGPRVYAIVQFTSERH 58

Query: 369  AEQISSLINQRLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSLWK 548
               I +   +RLYYG SYLK  E+++DIVPKPR  + ++    + FGCQ+S +KF +LW 
Sbjct: 59   TRLIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWS 118

Query: 549  GLDAILNVGFGLRKLEFLLTHRHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVSAA 728
              D  ++ G G+RKL F  +    +Y+L+LSY++IWQI L  P+ R  S+KFL+IQV  A
Sbjct: 119  AQDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGR--SSKFLVIQVIGA 176

Query: 729  PRIFKKPLCSSGDIYGDPTFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELPYNCKLP 908
            P+IF+K       ++G    +++ D  D+QW+R TDFT+SSCIGQS+A CLELP +  +P
Sbjct: 177  PKIFEKEDQPINLLFG--IMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVP 234

Query: 909  GIRENFHNYKEDE-GRFLLESGSTFSHRMD-LVPIVEPPPHGQELPYDILFKINSLVQNG 1082
              RENF NY E     FL+ESGS++S   + LVP+V+PPP G  LP++ILFK+N+LVQN 
Sbjct: 235  DFRENFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPP-GFSLPFEILFKLNTLVQNA 293

Query: 1083 YLSGPTLDSTFFRLVH 1130
             LSGP LD  F+RL++
Sbjct: 294  CLSGPALDLDFYRLLN 309


>gb|EYU28878.1| hypothetical protein MIMGU_mgv1a000505mg [Mimulus guttatus]
          Length = 1110

 Score =  307 bits (787), Expect = 5e-81
 Identities = 172/322 (53%), Positives = 211/322 (65%)
 Frame = +3

Query: 189  MGRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQTKTTRSNPRSFAVVQFTSPES 368
            MGRTIQV GFP  V+AE VK FLENYTGEGTV AL+++  K  R   R++A VQFT+   
Sbjct: 1    MGRTIQVFGFPYLVAAELVKKFLENYTGEGTVIALEVKTAKVGR---RAYARVQFTNIRC 57

Query: 369  AEQISSLINQRLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSLWK 548
            AE I  L   RLYYGTSYLK  E   DIV  PRT    +E   L+FGCQIS  KFS LWK
Sbjct: 58   AETIIDLAKNRLYYGTSYLKAYESDIDIVQNPRTFAHEMENVTLNFGCQISPHKFSVLWK 117

Query: 549  GLDAILNVGFGLRKLEFLLTHRHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVSAA 728
            G    +  G G++K+ F L H  +EYK+ LSY++IWQI L +   +  S+K L+IQ+  A
Sbjct: 118  GESVTVKFGTGMKKMHFFLRHNSVEYKMQLSYENIWQIVLYNSYGQ--SSKLLVIQLFGA 175

Query: 729  PRIFKKPLCSSGDIYGDPTFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELPYNCKLP 908
            PRI+KK    SG +Y     +YF  T DDQWVR TDF T S IGQSS++CL+LPY  +LP
Sbjct: 176  PRIYKK---LSGSVY-----SYFMVTQDDQWVRTTDF-TQSLIGQSSSLCLQLPYGMRLP 226

Query: 909  GIRENFHNYKEDEGRFLLESGSTFSHRMDLVPIVEPPPHGQELPYDILFKINSLVQNGYL 1088
              R+NF  YKE E  F LE+G  FSH  DLVPIV  PP   +LPY +LFK+ SLVQ G L
Sbjct: 227  NFRDNFLYYKESETPFRLETGVPFSHNSDLVPIVR-PPIDIKLPYTLLFKVCSLVQTGCL 285

Query: 1089 SGPTLDSTFFRLVHPSNIPVHH 1154
             GP LD +FF LV+P+   + +
Sbjct: 286  PGPKLDRSFFDLVNPAKHDIRY 307


>ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Capsella rubella]
            gi|482575337|gb|EOA39524.1| hypothetical protein
            CARUB_v10008144mg [Capsella rubella]
          Length = 1107

 Score =  307 bits (787), Expect = 5e-81
 Identities = 158/317 (49%), Positives = 220/317 (69%), Gaps = 2/317 (0%)
 Frame = +3

Query: 189  MGRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQTKTTRSNPRSFAVVQFTSPES 368
            MG+TIQV GFP  V+ + VK+FLE  TG GTVYA+K+RQ K  R  PR FA+VQFTS   
Sbjct: 1    MGKTIQVFGFPVGVNTDDVKIFLERLTGSGTVYAIKVRQPK--RGGPRVFAIVQFTSERH 58

Query: 369  AEQISSLINQRLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSLWK 548
            A  I ++  +RLYYG SYLK  EM++DIVPKPR  + S+    ++FGCQ+S +K  +LW 
Sbjct: 59   ARLIITMAAERLYYGRSYLKAFEMEQDIVPKPRASLHSISNLKMYFGCQVSPKKLLTLWS 118

Query: 549  GLDAILNVGFGLRKLEFLLTHRHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVSAA 728
              +  ++ G G+RKL F ++    +Y+L+LSY++IWQI L  P+    S+KFL+IQV  A
Sbjct: 119  AHNVCVSFGTGMRKLHFSMSWYQKDYRLELSYENIWQIDLHSPQGG--SSKFLVIQVIGA 176

Query: 729  PRIFKKPLCSSGDIYGDPTFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELPYNCKLP 908
            P+IF+K       ++G    +++ D  D+QW+R TDFT+SSCIGQS+A CLELP +  +P
Sbjct: 177  PKIFEKEDQPVNFLFG--MMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHVHVP 234

Query: 909  GIRENFHNYKEDE-GRFLLESGSTFSHRMD-LVPIVEPPPHGQELPYDILFKINSLVQNG 1082
              RENF NY E     FL++SGS++S   + LVP+V+PPP G +LP++ILFK+N+LVQN 
Sbjct: 235  DFRENFANYAEHRASTFLIQSGSSYSSNANKLVPVVDPPP-GFDLPFEILFKVNTLVQNA 293

Query: 1083 YLSGPTLDSTFFRLVHP 1133
             L GP LD  F++L++P
Sbjct: 294  CLPGPALDLEFYQLLNP 310


>emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis halleri subsp. halleri]
          Length = 1107

 Score =  306 bits (784), Expect = 1e-80
 Identities = 160/318 (50%), Positives = 219/318 (68%), Gaps = 3/318 (0%)
 Frame = +3

Query: 189  MGRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQTKTTRSNPRSFAVVQFTSPES 368
            MG+TIQV GFP+ VSAE VK FLE  TG GTVYA+K+RQ K  +  PR FA+VQFT+   
Sbjct: 1    MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPK--KGGPRVFAIVQFTNERY 58

Query: 369  AEQI-SSLINQRLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSLW 545
            A QI +    +RLYYG SYL   E+ +DIVPKPR  + ++    ++FGCQ+S +KF +LW
Sbjct: 59   ARQIITGAAERRLYYGRSYLNAFEVDQDIVPKPRASLHNISGLKMYFGCQVSTQKFLTLW 118

Query: 546  KGLDAILNVGFGLRKLEFLLTHRHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVSA 725
               D  ++ G G+RKL F  +    +Y+L+LSY++IWQI L  P+ R  S+KFL+IQV  
Sbjct: 119  SAQDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGR--SSKFLVIQVIG 176

Query: 726  APRIFKKPLCSSGDIYGDPTFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELPYNCKL 905
            AP+IF+K       ++G    +++ D  D+QW+R TDFT+SSCIGQS+A CLELP +  +
Sbjct: 177  APKIFEKEDQPINLLFG--MMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNV 234

Query: 906  PGIRENFHNYKEDEGR-FLLESGSTFSHRMD-LVPIVEPPPHGQELPYDILFKINSLVQN 1079
            P  RENF NY E     FL+ESGS++S   + LVP+V+PPP G +LP++ILFK+N+LVQN
Sbjct: 235  PDFRENFANYAEHRASPFLIESGSSYSSNANKLVPVVDPPP-GFDLPFEILFKLNTLVQN 293

Query: 1080 GYLSGPTLDSTFFRLVHP 1133
              L GP LD   ++L++P
Sbjct: 294  ACLPGPALDLDVYQLLNP 311


>ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
            gi|297338672|gb|EFH69089.1| RNA-dependent RNA polymerase
            1 [Arabidopsis lyrata subsp. lyrata]
          Length = 1107

 Score =  301 bits (771), Expect = 3e-79
 Identities = 158/321 (49%), Positives = 219/321 (68%), Gaps = 3/321 (0%)
 Frame = +3

Query: 189  MGRTIQVSGFPSSVSAETVKVFLENYTGEGTVYALKLRQTKTTRSNPRSFAVVQFTSPES 368
            MG+TIQV GFP+ VSAE VK FLE  TG GTVYA+K+RQ K  +  PR FA+VQFT+   
Sbjct: 1    MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPK--KGGPRVFAIVQFTNEIY 58

Query: 369  AEQI-SSLINQRLYYGTSYLKVLEMKRDIVPKPRTLMLSLEVKALHFGCQISEEKFSSLW 545
            A QI +    +RLYYG SYL   E+++DIVPKPR  + ++    ++FGCQ+S +   +LW
Sbjct: 59   ARQIITGAAERRLYYGRSYLNAFEVEQDIVPKPRASLHNISGLKMYFGCQVSTQTLLTLW 118

Query: 546  KGLDAILNVGFGLRKLEFLLTHRHMEYKLDLSYDSIWQIQLRHPRSRLLSTKFLLIQVSA 725
               D  ++ G G+RKL F  +    +Y+L+LSY++IWQI L  P+ R  S+KFL+IQV  
Sbjct: 119  SAQDVSVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGR--SSKFLVIQVIG 176

Query: 726  APRIFKKPLCSSGDIYGDPTFNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELPYNCKL 905
            AP+IF+K       ++G    +++ D  D+QW+R TDFT+SSCIGQS+A CLELP +  +
Sbjct: 177  APKIFEKEDQPINLLFG--MMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNV 234

Query: 906  PGIRENFHNYKEDE-GRFLLESGSTFSHRMD-LVPIVEPPPHGQELPYDILFKINSLVQN 1079
            P  RENF NY E     +L+ESGS++S   + LVP+V+PPP G +LP++ILFK+N+LVQN
Sbjct: 235  PDFRENFANYAEHRASTYLIESGSSYSSNANKLVPVVDPPP-GFDLPFEILFKLNTLVQN 293

Query: 1080 GYLSGPTLDSTFFRLVHPSNI 1142
              L GP LD   ++L++P  I
Sbjct: 294  ACLPGPALDLDVYQLLNPKKI 314