BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia22_contig00015807
         (3331 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN73567.1| hypothetical protein VITISV_003451 [Vitis vinifera]   169   e-103
emb|CAN66637.1| hypothetical protein VITISV_011340 [Vitis vinifera]   156   e-100
emb|CAN76029.1| hypothetical protein VITISV_016069 [Vitis vinifera]   174   4e-98
emb|CAN66710.1| hypothetical protein VITISV_006397 [Vitis vinifera]   166   9e-82
emb|CAN69855.1| hypothetical protein VITISV_041230 [Vitis vinifera]   163   2e-81
gb|AAR13298.1| gag-pol polyprotein [Phaseolus vulgaris]               151   8e-80
gb|ABA93790.1| retrotransposon protein, putative, Ty1-copia subc...   140   3e-77
gb|ABA99134.1| retrotransposon protein, putative, Ty1-copia subc...   140   1e-76
gb|AAT44162.1| putative polyprotein [Oryza sativa Japonica Group]     148   6e-73
gb|AAN61480.1| Putative polyprotein from transposon TNT [Oryza s...   147   8e-73
gb|AAR01716.1| putative Gag and Pol polyprotein [Oryza sativa Ja...   147   8e-73
emb|CAE04541.2| OSJNBa0040D17.9 [Oryza sativa Japonica Group]         148   1e-72
gb|AAO60021.1| putative polyprotein [Oryza sativa Japonica Group...   148   1e-72
gb|AAR01682.1| putative gag and pol protein [Oryza sativa Japoni...   147   2e-72
gb|ABA91402.1| retrotransposon protein, putative, Ty1-copia subc...   148   3e-72
gb|ABF96702.1| retrotransposon protein, putative, Ty1-copia subc...   148   3e-72
gb|AAU44026.2| putative polyprotein [Oryza sativa Japonica Group]     148   3e-72
emb|CAD40744.2| OSJNBa0072D21.4 [Oryza sativa Japonica Group]         148   3e-72
emb|CAE01299.2| OSJNBa0020P07.16 [Oryza sativa Japonica Group]        148   3e-72
gb|AAP20858.1| retrotransposon protein, putative, Ty1-copia sub-...   148   3e-72

>emb|CAN73567.1| hypothetical protein VITISV_003451 [Vitis vinifera]
          Length = 1277

 Score =  169 bits (428), Expect(4) = e-103
 Identities = 89/165 (53%), Positives = 115/165 (69%)
 Frame = -2

Query: 2343 FRNEPQSFKEAMSTPKALFWKEVVNNELEPII*NHT*ELVSLPPGNIPIGCKWIFKRKMK 2164
            F  EPQ+FKEA+++ + L WKE + +E++ I+ NHT ELV LP G  P+  KWIFKRKMK
Sbjct: 761  FPCEPQTFKEAVNSTEGLMWKEAIKSEIDSILQNHTWELVBLPLGCKPLSSKWIFKRKMK 820

Query: 2163 SDDFIDKYKARLVAKGFKQKKCLDYFDMYSPITRITSIPMLIEIVALYKFEINQIDVKTI 1984
             D  IDKYKARLV KG++Q + LDYFD YSP+TRI SI M++ I AL   EI+Q+DVKT 
Sbjct: 821  VDGSIDKYKARLVIKGYRQTEGLDYFDTYSPVTRINSIRMVLAIAALRNLEIHQMDVKTA 880

Query: 1983 FRNDKLNEKIYIEQPERFIVK**EKKVSFCQIILWLKASAQSMTQ 1849
            F N  L+E+IY+EQPE F     EKKV  C+++  L    Q+  Q
Sbjct: 881  FLNGDLDEEIYMEQPEGFSAPGQEKKV--CKLVKSLYGLKQAPKQ 923



 Score =  119 bits (298), Expect(4) = e-103
 Identities = 60/110 (54%), Positives = 78/110 (70%)
 Frame = -2

Query: 1233 TFGGAVIL*KSSK*TCIAQSTIES*FINLDKASEEAKWVHHFLEDILLWEKSMTAICVHC 1054
            T GGA +  KSSK   IA+ST+ES FI LDK  EEA+W+ HFLEDI  W K +  IC+HC
Sbjct: 1143 TLGGAAVSWKSSKQXVIARSTMESEFIALDKCGEEAEWLRHFLEDIPRWSKPVPPICIHC 1202

Query: 1053 DNQMSIIWA*NFVYSRKSWHFRRIHNTVRQLLSN*VISINFIKSKENFTD 904
            D+Q +I  A + +Y+ KS H  R HNT+RQLLS  VIS++++KSK+N  D
Sbjct: 1203 DSQSAIGRAQSNMYNGKSRHIXRRHNTIRQLLSTGVISVDYVKSKDNIAD 1252



 Score =  110 bits (274), Expect(4) = e-103
 Identities = 55/113 (48%), Positives = 77/113 (68%)
 Frame = -1

Query: 1741 CFYLDDMFIMGTSKNIIKSAKKMLTSNFDIKDLGVTDVILGIKVTRTLDGLVLSQLHYIE 1562
            C Y+DDM I+G+   +I S K ML S FD+KD+G+ DVILGIK+ RT + L+LSQ HY++
Sbjct: 959  CLYVDDMLIVGSDDKMITSTKNMLNSRFDMKDMGLADVILGIKIKRTSBELILSQSHYVD 1018

Query: 1561 KMLKTFNKFDISSTKIPFDYHNHNLKKSIGRRISHLEYS*IIGSLMYVINYDR 1403
            K+L  F+K +    + P D   H L K+ G  +S +EYS IIGSLMY+++  R
Sbjct: 1019 KILGKFDKDNSGVARTPVDVTLH-LSKNKGESVSQVEYSRIIGSLMYLMSCTR 1070



 Score = 49.3 bits (116), Expect(4) = e-103
 Identities = 25/48 (52%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
 Frame = -3

Query: 1403 DIIYLIEKLSRNTSNLRVTHWEVLVKVLK--RCILDYRLHYTRYQLYL 1266
            DI Y + KLSR TSN    HW+ +++VLK  R   DY LHYTRY   L
Sbjct: 1072 DIAYAVSKLSRYTSNPGAKHWQGIIRVLKYLRFTRDYGLHYTRYPAVL 1119



 Score = 70.1 bits (170), Expect = 6e-09
 Identities = 30/59 (50%), Positives = 39/59 (66%)
 Frame = -3

Query: 1931 SSSNDRKRKCHFVKLFYGLKQVPNQ*HKKFDNVMIKNGLKIDECDKCVYYKNKNKNLIM 1755
            S+    K+ C  VK  YGLKQ P Q H+KFDNVM+ +G KI+ECDKCVY K+     ++
Sbjct: 899  SAPGQEKKVCKLVKSLYGLKQAPKQWHEKFDNVMLSHGFKINECDKCVYVKDTEHGYVI 957


>emb|CAN66637.1| hypothetical protein VITISV_011340 [Vitis vinifera]
          Length = 1316

 Score =  156 bits (395), Expect(4) = e-100
 Identities = 86/170 (50%), Positives = 113/170 (66%), Gaps = 2/170 (1%)
 Frame = -2

Query: 2352 FLSF--RNEPQSFKEAMSTPKALFWKEVVNNELEPII*NHT*ELVSLPPGNIPIGCKWIF 2179
            FL+F    EPQ+FKEA+++ + L WKE + +E++ I+ NHT ELV LPPG  P+  KWIF
Sbjct: 805  FLTFMLEGEPQTFKEAVNSTEGLMWKEAIKSEIDSILQNHTWELVDLPPGCKPLSSKWIF 864

Query: 2178 KRKMKSDDFIDKYKARLVAKGFKQKKCLDYFDMYSPITRITSIPMLIEIVALYKFEINQI 1999
            KRKMK D  IDKYKARLV KG++Q + LDYFD YSP+TRI SI M++ I AL   EI+Q+
Sbjct: 865  KRKMKVDGSIDKYKARLVIKGYRQTEGLDYFDTYSPVTRINSIRMVLAIAALRNLEIHQM 924

Query: 1998 DVKTIFRNDKLNEKIYIEQPERFIVK**EKKVSFCQIILWLKASAQSMTQ 1849
            D+K          +IY+EQPE F     EKKV  C+++  L    Q+  Q
Sbjct: 925  DMK----------EIYMEQPEGFSAPGQEKKV--CKLVKSLYGLKQAPKQ 962



 Score =  124 bits (310), Expect(4) = e-100
 Identities = 62/110 (56%), Positives = 80/110 (72%)
 Frame = -2

Query: 1233 TFGGAVIL*KSSK*TCIAQSTIES*FINLDKASEEAKWVHHFLEDILLWEKSMTAICVHC 1054
            T GGA +  KSSK T IA+ST+ES FI LDK  EEA+W+ HFLEDI  W K +  IC+HC
Sbjct: 1182 TLGGAAVSWKSSKQTVIARSTMESEFIALDKCGEEAEWLRHFLEDIPRWSKPVPPICIHC 1241

Query: 1053 DNQMSIIWA*NFVYSRKSWHFRRIHNTVRQLLSN*VISINFIKSKENFTD 904
            D+Q +I  A + +Y+ KS H RR HNT+RQLLS  VIS++++KSK+N  D
Sbjct: 1242 DSQSAIGRAQSNMYNGKSRHIRRRHNTIRQLLSTGVISVDYVKSKDNIAD 1291



 Score =  108 bits (271), Expect(4) = e-100
 Identities = 55/113 (48%), Positives = 77/113 (68%)
 Frame = -1

Query: 1741 CFYLDDMFIMGTSKNIIKSAKKMLTSNFDIKDLGVTDVILGIKVTRTLDGLVLSQLHYIE 1562
            C Y+DDM I+G+   +I S K ML S FD+KD+G+ DVILGIK+ RT + L+LSQ HY++
Sbjct: 998  CLYVDDMLIVGSDDKMITSTKNMLNSRFDMKDMGLADVILGIKIKRTSNELILSQSHYVD 1057

Query: 1561 KMLKTFNKFDISSTKIPFDYHNHNLKKSIGRRISHLEYS*IIGSLMYVINYDR 1403
            K+L  F+K +    + P D   H L K+ G  +S +EYS IIGSLMY+++  R
Sbjct: 1058 KILGKFDKDNSGVARTPVDVTLH-LSKNKGESVSQVEYSRIIGSLMYLMSCTR 1109



 Score = 48.9 bits (115), Expect(4) = e-100
 Identities = 25/48 (52%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
 Frame = -3

Query: 1403 DIIYLIEKLSRNTSNLRVTHWEVLVKVLK--RCILDYRLHYTRYQLYL 1266
            DI Y + KLSR TSN    HW+ +++VLK  R   DY LHYTRY   L
Sbjct: 1111 DIAYAVGKLSRYTSNPGAKHWQGIIRVLKYLRFTRDYXLHYTRYPAVL 1158



 Score = 70.9 bits (172), Expect = 4e-09
 Identities = 32/71 (45%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
 Frame = -3

Query: 1964 MRKFTLSNQKGSSSNDRKRK-CHFVKLFYGLKQVPNQ*HKKFDNVMIKNGLKIDECDKCV 1788
            M++  +   +G S+  +++K C  VK  YGLKQ P Q H+KFDNVM+ +G KI+ECDKCV
Sbjct: 926  MKEIYMEQPEGFSAPGQEKKVCKLVKSLYGLKQAPKQWHEKFDNVMLSHGFKINECDKCV 985

Query: 1787 YYKNKNKNLIM 1755
            Y K+     ++
Sbjct: 986  YVKDTEHGYVI 996


>emb|CAN76029.1| hypothetical protein VITISV_016069 [Vitis vinifera]
          Length = 1096

 Score =  174 bits (441), Expect(4) = 4e-98
 Identities = 92/170 (54%), Positives = 119/170 (70%), Gaps = 2/170 (1%)
 Frame = -2

Query: 2352 FLSF--RNEPQSFKEAMSTPKALFWKEVVNNELEPII*NHT*ELVSLPPGNIPIGCKWIF 2179
            FL+F    EPQ+FKEA+++ + L WKE + +E++ I+ NHT ELV LPPG  P+  KWIF
Sbjct: 588  FLTFMLEGEPQTFKEAVNSTEGLMWKEAIKSEIDSILQNHTWELVDLPPGCKPLSSKWIF 647

Query: 2178 KRKMKSDDFIDKYKARLVAKGFKQKKCLDYFDMYSPITRITSIPMLIEIVALYKFEINQI 1999
            KRKMK D  IDKYKARLV KG++Q + LDYFD YSP+TRI SI M++ I AL   EI+Q+
Sbjct: 648  KRKMKVDGSIDKYKARLVIKGYRQTEGLDYFDTYSPVTRINSIRMVLAIAALRNLEIHQM 707

Query: 1998 DVKTIFRNDKLNEKIYIEQPERFIVK**EKKVSFCQIILWLKASAQSMTQ 1849
            DVKT F N  L+E+IY+EQPE F     EKKV  C+++  L    Q+  Q
Sbjct: 708  DVKTAFLNGDLDEEIYMEQPEGFSAPGQEKKV--CKLVKSLYGLKQAPKQ 755



 Score =  112 bits (280), Expect(4) = 4e-98
 Identities = 59/119 (49%), Positives = 79/119 (66%), Gaps = 4/119 (3%)
 Frame = -2

Query: 1197 K*TCIAQSTIES*FINLDKASEEAKWVHHFLEDILLWEKSMTAICVHCDNQMSIIWA*NF 1018
            K T IA+ST+ES FI LDK  EEA+W+ HFLEDI  W K +  IC+HCD+Q +I  A + 
Sbjct: 974  KQTVIARSTMESEFIALDKCGEEAEWLRHFLEDIPRWSKPVPPICIHCDSQSAIGRAQSN 1033

Query: 1017 VYSRKSWHFRRIHNTVRQLLSN*VISINFIKSKENFTDKFV*KIKISYIE----GNGIK 853
            +Y+ KS H RR HNT+RQLLS  VIS++++KSK+N  D     +    +E    G G+K
Sbjct: 1034 MYNGKSRHIRRRHNTIRQLLSTGVISVDYVKSKDNIADPLTKGLNRELVEKSSRGMGLK 1092



 Score = 96.3 bits (238), Expect(4) = 4e-98
 Identities = 52/114 (45%), Positives = 73/114 (64%), Gaps = 1/114 (0%)
 Frame = -1

Query: 1741 CFYLDDMFIMGTSKNIIKSAKKMLT-SNFDIKDLGVTDVILGIKVTRTLDGLVLSQLHYI 1565
            C Y+DDM I+G+   +I S K ML       KD+G+ DVILGIK+ RT + L+LSQ HY+
Sbjct: 791  CLYVDDMLIVGSDDKMITSTKNMLQIQGLTSKDMGLADVILGIKIKRTSNELILSQSHYV 850

Query: 1564 EKMLKTFNKFDISSTKIPFDYHNHNLKKSIGRRISHLEYS*IIGSLMYVINYDR 1403
            +K+L  F+K +    + P D   H L K+ G  +S +EYS IIGSLMY+++  R
Sbjct: 851  DKILGKFDKDNSGVARTPVDVTLH-LSKNKGESVSQVEYSRIIGSLMYLMSCTR 903



 Score = 48.5 bits (114), Expect(4) = 4e-98
 Identities = 25/48 (52%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
 Frame = -3

Query: 1403 DIIYLIEKLSRNTSNLRVTHWEVLVKVLK--RCILDYRLHYTRYQLYL 1266
            DI Y + KLSR TSN    HW+ +++VLK  R   DY LHYTRY   L
Sbjct: 905  DIAYAVGKLSRYTSNPGAKHWQGIIRVLKYLRFTRDYGLHYTRYPAVL 952



 Score = 70.1 bits (170), Expect = 6e-09
 Identities = 30/59 (50%), Positives = 39/59 (66%)
 Frame = -3

Query: 1931 SSSNDRKRKCHFVKLFYGLKQVPNQ*HKKFDNVMIKNGLKIDECDKCVYYKNKNKNLIM 1755
            S+    K+ C  VK  YGLKQ P Q H+KFDNVM+ +G KI+ECDKCVY K+     ++
Sbjct: 731  SAPGQEKKVCKLVKSLYGLKQAPKQWHEKFDNVMLSHGFKINECDKCVYVKDTEHGYVI 789


>emb|CAN66710.1| hypothetical protein VITISV_006397 [Vitis vinifera]
          Length = 1105

 Score =  166 bits (419), Expect(4) = 9e-82
 Identities = 78/167 (46%), Positives = 116/167 (69%)
 Frame = -2

Query: 2349 LSFRNEPQSFKEAMSTPKALFWKEVVNNELEPII*NHT*ELVSLPPGNIPIGCKWIFKRK 2170
            L    +P+++KEAM++    FWKE +N+E++ I+ N T ELV LPPG+ PIGCKW+F+RK
Sbjct: 588  LQIEEDPKTYKEAMASRDVAFWKEAINDEMDSIMSNQTWELVDLPPGSKPIGCKWVFRRK 647

Query: 2169 MKSDDFIDKYKARLVAKGFKQKKCLDYFDMYSPITRITSIPMLIEIVALYKFEINQIDVK 1990
              +D  I  +KARLVAKGFKQ++ +DYFD Y+P+ R TSI +L  + +++   ++Q+DVK
Sbjct: 648  YHTDGMIQTFKARLVAKGFKQREGIDYFDTYAPVARTTSIRILFALASIHNLFVHQMDVK 707

Query: 1989 TIFRNDKLNEKIYIEQPERFIVK**EKKVSFCQIILWLKASAQSMTQ 1849
            T F N  LNE++Y+EQPE F++   E KV  C+++  L    Q+  Q
Sbjct: 708  TAFLNGDLNEEVYMEQPEGFVLPGNENKV--CKLVKSLYGLKQAPKQ 752



 Score = 93.6 bits (231), Expect(4) = 9e-82
 Identities = 50/113 (44%), Positives = 65/113 (57%)
 Frame = -1

Query: 1741 CFYLDDMFIMGTSKNIIKSAKKMLTSNFDIKDLGVTDVILGIKVTRTLDGLVLSQLHYIE 1562
            C Y+DDM I+      I   K+ L+S F +KDLG  D ILGIKV R   G  L+Q HYIE
Sbjct: 788  CLYVDDMLILSDDMRGIIETKRFLSSTFKMKDLGEVDTILGIKVKRNSGGYALNQTHYIE 847

Query: 1561 KMLKTFNKFDISSTKIPFDYHNHNLKKSIGRRISHLEYS*IIGSLMYVINYDR 1403
            K++  F+   I     PFD  +  L+K+ GR ++ LEY+  IGSLMY     R
Sbjct: 848  KVVSKFSHLKIKDANTPFD-SSIKLEKNDGRSVAQLEYASAIGSLMYAAQCTR 899



 Score = 84.0 bits (206), Expect(4) = 9e-82
 Identities = 43/112 (38%), Positives = 66/112 (58%)
 Frame = -2

Query: 1233 TFGGAVIL*KSSK*TCIAQSTIES*FINLDKASEEAKWVHHFLEDILLWEKSMTAICVHC 1054
            T GG  +   S K TCI+ ST+E+ FI L    +EA+W+   + DI     +++ + +HC
Sbjct: 972  TLGGGAVSWGSKKQTCISHSTMEAEFIALAATRKEAEWLRDLMMDIPFTANNVSTVSIHC 1031

Query: 1053 DNQMSIIWA*NFVYSRKSWHFRRIHNTVRQLLSN*VISINFIKSKENFTDKF 898
            D+Q ++  A + VY+ KS H    H  VRQL+ N +ISI+F++S  N  D F
Sbjct: 1032 DSQATLARAYSGVYNGKSRHISIRHEYVRQLIQNGIISISFVRSSGNLADPF 1083



 Score = 33.1 bits (74), Expect(4) = 9e-82
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = -3

Query: 1403 DIIYLIEKLSRNTSNLRVTHWEVLVKVLK--RCILDYRLHYTRY 1278
            DI + + KLSR TSN  V HW+ + +VL   R   +  L Y+++
Sbjct: 901  DISFAVSKLSRFTSNPSVEHWKAIGRVLSYLRNTKELSLQYSKF 944


>emb|CAN69855.1| hypothetical protein VITISV_041230 [Vitis vinifera]
          Length = 1236

 Score =  163 bits (413), Expect(4) = 2e-81
 Identities = 77/167 (46%), Positives = 114/167 (68%)
 Frame = -2

Query: 2349 LSFRNEPQSFKEAMSTPKALFWKEVVNNELEPII*NHT*ELVSLPPGNIPIGCKWIFKRK 2170
            L    +P+++KEAM++    FWKE +N+E++ I+ N T ELV LPPG+ PIGCKW+F+RK
Sbjct: 732  LQIEEDPKTYKEAMASRDVAFWKEAINDEMDSIMSNQTWELVDLPPGSKPIGCKWVFRRK 791

Query: 2169 MKSDDFIDKYKARLVAKGFKQKKCLDYFDMYSPITRITSIPMLIEIVALYKFEINQIDVK 1990
              +D  I  +KARLVAKGFKQ++ +DYFD Y+P+ R T I +L  + +++   ++Q+DVK
Sbjct: 792  YHTDGMIQTFKARLVAKGFKQREGIDYFDTYAPVARTTXIRILFALASIHNLFVHQMDVK 851

Query: 1989 TIFRNDKLNEKIYIEQPERFIVK**EKKVSFCQIILWLKASAQSMTQ 1849
            T F N  LNE++Y+EQPE F++   E KV  C+++  L    Q   Q
Sbjct: 852  TAFLNGBLNEEVYMEQPEGFVLLGNENKV--CKLVKSLYGLKQDPKQ 896



 Score = 94.7 bits (234), Expect(4) = 2e-81
 Identities = 50/113 (44%), Positives = 66/113 (58%)
 Frame = -1

Query: 1741 CFYLDDMFIMGTSKNIIKSAKKMLTSNFDIKDLGVTDVILGIKVTRTLDGLVLSQLHYIE 1562
            C Y+DDM I+      I   K+ L+S F +KDLG  D ILGIKV R  +G  L+Q HYIE
Sbjct: 932  CLYVDDMLILSDDMKGIIETKRFLSSTFKMKDLGEVDTILGIKVKRNSEGYALNQTHYIE 991

Query: 1561 KMLKTFNKFDISSTKIPFDYHNHNLKKSIGRRISHLEYS*IIGSLMYVINYDR 1403
            K++  F+   I     PFD  +  L+K+ GR ++ LEY+  IGSLMY     R
Sbjct: 992  KVVSKFSHLKIKDANTPFD-SSIKLEKNDGRSVAQLEYASAIGSLMYAAQCTR 1043



 Score = 82.4 bits (202), Expect(4) = 2e-81
 Identities = 46/125 (36%), Positives = 74/125 (59%)
 Frame = -2

Query: 1272 ILE*YNNANQ*LSTFGGAVIL*KSSK*TCIAQSTIES*FINLDKASEEAKWVHHFLEDIL 1093
            I+E Y++A   +S+ G  +    S K TCI+ ST+E+ FI L    +EA+W+   + DI 
Sbjct: 1091 IIEGYSDARW-ISSVGDNLSTTGSKKQTCISHSTMEAEFIALAATGKEAEWLRDLMMDIP 1149

Query: 1092 LWEKSMTAICVHCDNQMSIIWA*NFVYSRKSWHFRRIHNTVRQLLSN*VISINFIKSKEN 913
                +++ + +HCD+Q ++  A + VY+ KS H    H  VRQL+ N +ISI+F++S  N
Sbjct: 1150 FTANNVSTVSIHCDSQATLARAYSGVYNGKSRHISIRHEYVRQLIQNGIISISFVRSSGN 1209

Query: 912  FTDKF 898
              D F
Sbjct: 1210 LADPF 1214



 Score = 34.7 bits (78), Expect(4) = 2e-81
 Identities = 15/28 (53%), Positives = 20/28 (71%)
 Frame = -3

Query: 1403 DIIYLIEKLSRNTSNLRVTHWEVLVKVL 1320
            DI + + KLSR  SNLRV HW+ + +VL
Sbjct: 1045 DISFAVSKLSRFISNLRVEHWKAIGRVL 1072


>gb|AAR13298.1| gag-pol polyprotein [Phaseolus vulgaris]
          Length = 1290

 Score =  151 bits (381), Expect(4) = 8e-80
 Identities = 80/163 (49%), Positives = 109/163 (66%)
 Frame = -2

Query: 2337 NEPQSFKEAMSTPKALFWKEVVNNELEPII*NHT*ELVSLPPGNIPIGCKWIFKRKMKSD 2158
            N+P SF EA S P A  W + +  ELE I  N+T  LV LP G  PIGCKWIFK+K   D
Sbjct: 767  NDPISFVEATSAPDAKHWDKAIKTELESIKKNNTWTLVDLPKGAKPIGCKWIFKKKYHPD 826

Query: 2157 DFIDKYKARLVAKGFKQKKCLDYFDMYSPITRITSIPMLIEIVALYKFEINQIDVKTIFR 1978
              I+KYKARLVAKGF QK  +DYFD ++P+TRI+SI +L+ + +++K  I+Q+DVKT F 
Sbjct: 827  GSIEKYKARLVAKGFTQKHNIDYFDTFAPVTRISSIRVLLALASIHKLVIHQMDVKTTFL 886

Query: 1977 NDKLNEKIYIEQPERFIVK**EKKVSFCQIILWLKASAQSMTQ 1849
            N +L E+IY+ QPE  +V   ++KV  C+++  L    Q+  Q
Sbjct: 887  NGELEEEIYMTQPEGCVVLGQKEKV--CKLLKSLYGLKQAPKQ 927



 Score =  100 bits (250), Expect(4) = 8e-80
 Identities = 50/113 (44%), Positives = 72/113 (63%)
 Frame = -1

Query: 1741 CFYLDDMFIMGTSKNIIKSAKKMLTSNFDIKDLGVTDVILGIKVTRTLDGLVLSQLHYIE 1562
            C Y+DDM I GT  +I+   K  L S F++KD+G   VILG+K+ R  D ++LSQ  Y E
Sbjct: 963  CLYVDDMLIFGTCNDIVFKTKLFLGSKFEMKDMGEASVILGVKIIRKGDSILLSQEKYTE 1022

Query: 1561 KMLKTFNKFDISSTKIPFDYHNHNLKKSIGRRISHLEYS*IIGSLMYVINYDR 1403
            K+LK F  +D  S   P+D  N  LKK+ G  IS  +Y+ IIGSL++++++ R
Sbjct: 1023 KLLKKFGYYDFKSVSTPYD-ANSKLKKNRGESISQTQYAQIIGSLLHLMSFSR 1074



 Score = 84.3 bits (207), Expect(4) = 8e-80
 Identities = 44/110 (40%), Positives = 70/110 (63%)
 Frame = -2

Query: 1233 TFGGAVIL*KSSK*TCIAQSTIES*FINLDKASEEAKWVHHFLEDILLWEKSMTAICVHC 1054
            T GG  +  +S++ T IA+ST+ES F+ L+ A  EA+W+ +FL +I L  K   ++ +HC
Sbjct: 1147 TLGGGAVTWRSARQTIIARSTMESEFVALEMAGSEAEWLKNFLANIPLGMKPTPSVSMHC 1206

Query: 1053 DNQMSIIWA*NFVYSRKSWHFRRIHNTVRQLLSN*VISINFIKSKENFTD 904
            D Q +I  A N  Y+ K+ H +  HN V+QLL +  ISI+++KS+ +  D
Sbjct: 1207 DCQSAIAIAKNKSYNGKNRHIQLRHNLVKQLLKSGTISIDYVKSERDLAD 1256



 Score = 33.5 bits (75), Expect(4) = 8e-80
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = -3

Query: 1403 DIIYLIEKLSRNTSNLRVTHWEVLVKVLK--RCILDYRLHYTRYQLYL 1266
            DI Y + +LSR T      HWE L +++K  R  +DY + Y+ +   L
Sbjct: 1076 DIAYAVGRLSRCTQCPSQDHWEALARLMKYLRGTMDYAIEYSGFPAVL 1123


>gb|ABA93790.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1370

 Score =  140 bits (353), Expect(5) = 3e-77
 Identities = 64/134 (47%), Positives = 98/134 (73%)
 Frame = -2

Query: 2331 PQSFKEAMSTPKALFWKEVVNNELEPII*NHT*ELVSLPPGNIPIGCKWIFKRKMKSDDF 2152
            P++ +E  S+P A +WKE V +E++ I+ N T E+V  P G  P+GCKW+FK+K++ D  
Sbjct: 858  PRTIEETYSSPDADYWKEAVRSEMDSIMSNGTWEVVERPYGCKPVGCKWVFKKKLRPDGT 917

Query: 2151 IDKYKARLVAKGFKQKKCLDYFDMYSPITRITSIPMLIEIVALYKFEINQIDVKTIFRND 1972
            I+KYKARLVAKG+ QK+  D+FD YSP+ R+T I +L+ +VA +   ++Q+DVKT F N 
Sbjct: 918  IEKYKARLVAKGYTQKEGEDFFDTYSPVARLTMIRVLLALVASHGLLVHQMDVKTAFLNG 977

Query: 1971 KLNEKIYIEQPERF 1930
            +L E+IY++QP+ +
Sbjct: 978  ELEEEIYMDQPDGY 991



 Score = 87.0 bits (214), Expect(5) = 3e-77
 Identities = 51/116 (43%), Positives = 75/116 (64%), Gaps = 3/116 (2%)
 Frame = -1

Query: 1741 CFYLDDMFIMGTSKNIIKSAKKMLTSNFDIKDLGVTDVILGIKVTRTLD-GLVLSQLHYI 1565
            C Y+DD+ I GTS N+I+  K  L+ +F++KDLG+ DVIL IK+ R  + G+ L+Q HY+
Sbjct: 1052 CLYVDDILIFGTSLNVIEEVKDFLSKSFEMKDLGMADVILNIKLLRGDEGGITLAQSHYV 1111

Query: 1564 EKMLKTFNKFDISSTKIPFDYHNHNLKKSIGRRIS--HLEYS*IIGSLMYVINYDR 1403
            +K+L  F   D  +   P+D  +  L+K+  RRI+   L YS IIGSLMY+ +  R
Sbjct: 1112 DKVLSRFGYNDCKAAPTPYD-PSVLLRKN--RRIARDQLRYSQIIGSLMYLASATR 1164



 Score = 65.5 bits (158), Expect(5) = 3e-77
 Identities = 37/113 (32%), Positives = 68/113 (60%), Gaps = 1/113 (0%)
 Frame = -2

Query: 1233 TFGGAVIL*KSSK*TCIAQSTIES*FINLDKASEEAKWVHHFLEDILLWEKSMTAICVHC 1054
            T GG  +  KS K T + +ST+E    +LD A+ EA+W+   L D+ + EK + AI ++C
Sbjct: 1237 TLGGGAVSWKSCKQTILTRSTMEVELTSLDTATVEAEWLRELLMDLPVVEKPVPAILMNC 1296

Query: 1053 DNQMSIIWA*NFVYSRK-SWHFRRIHNTVRQLLSN*VISINFIKSKENFTDKF 898
            DNQ  +I   +   + K S H +R   ++R+  ++ VI+++++++ +N  D+F
Sbjct: 1297 DNQTVVIKVNSSKDNMKSSRHVKRRLKSIRKQKNSGVIALDYVQTAKNLADQF 1349



 Score = 53.9 bits (128), Expect(5) = 3e-77
 Identities = 22/42 (52%), Positives = 28/42 (66%)
 Frame = -3

Query: 1904 CHFVKLFYGLKQVPNQ*HKKFDNVMIKNGLKIDECDKCVYYK 1779
            C  +K  YGLKQ P Q H+KFDN +   G  ++E DKCVYY+
Sbjct: 1001 CKLLKSLYGLKQAPKQWHEKFDNTLTSAGFVVNEDDKCVYYR 1042



 Score = 34.7 bits (78), Expect(5) = 3e-77
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -3

Query: 1403 DIIYLIEKLSRNTSNLRVTHWEVLVKVLK--RCILDYRLHYTRY 1278
            DI + + KLSR  SNL   HW  L +V+   +  + Y +HY  Y
Sbjct: 1166 DISFAVSKLSRFVSNLGDDHWHALERVMHYLKGTMSYGIHYAGY 1209


>gb|ABA99134.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1083

 Score =  140 bits (354), Expect(5) = 1e-76
 Identities = 64/137 (46%), Positives = 100/137 (72%)
 Frame = -2

Query: 2331 PQSFKEAMSTPKALFWKEVVNNELEPII*NHT*ELVSLPPGNIPIGCKWIFKRKMKSDDF 2152
            P++ +EA S+P A +WKE V +E++ I+ N T E+V  P G  P+GCKW+FK+K++ D  
Sbjct: 571  PRTIEEAYSSPDADYWKEAVRSEMDSIMSNGTWEVVERPYGCKPVGCKWVFKKKLRPDGT 630

Query: 2151 IDKYKARLVAKGFKQKKCLDYFDMYSPITRITSIPMLIEIVALYKFEINQIDVKTIFRND 1972
            I+KYKARLVAK + QK+  D+FD YSP+ R+T+I +L+ + A +   ++Q+DVKT F N 
Sbjct: 631  IEKYKARLVAKDYTQKEGDDFFDTYSPVARLTTIRVLLALAASHGLLVHQMDVKTTFLNG 690

Query: 1971 KLNEKIYIEQPERFIVK 1921
            +L E+IY+ QP+ +++K
Sbjct: 691  ELEEEIYMNQPDGYVLK 707



 Score = 84.0 bits (206), Expect(5) = 1e-76
 Identities = 50/116 (43%), Positives = 72/116 (62%), Gaps = 3/116 (2%)
 Frame = -1

Query: 1741 CFYLDDMFIMGTSKNIIKSAKKMLTSNFDIKDLGVTDVILGIKVTRTLD-GLVLSQLHYI 1565
            C Y+ D+ I GTS N+I+  K  L+ +F++KDLGV DV+L IK+ R  + G+ L Q HY+
Sbjct: 765  CLYVGDILIFGTSLNVIEEVKDFLSKSFEMKDLGVADVVLNIKLLRGDEGGITLVQSHYV 824

Query: 1564 EKMLKTFNKFDISSTKIPFDYHNHNLKKSIGRRIS--HLEYS*IIGSLMYVINYDR 1403
            +K+L  F   D      P+D  +  L+K+  RRI+   L YS IIGSLMY+ +  R
Sbjct: 825  DKVLSRFGYSDCKPAPTPYD-SSVLLRKN--RRIARDQLRYSQIIGSLMYLASATR 877



 Score = 67.0 bits (162), Expect(5) = 1e-76
 Identities = 39/113 (34%), Positives = 69/113 (61%), Gaps = 1/113 (0%)
 Frame = -2

Query: 1233 TFGGAVIL*KSSK*TCIAQSTIES*FINLDKASEEAKWVHHFLEDILLWEKSMTAICVHC 1054
            T GG  +  KS K T + +ST+E+    LD A+ EA+W+   L D+ + EK + AI ++C
Sbjct: 950  TLGGGAVSWKSCKQTILTRSTMEAELTALDTATVEAEWLRELLMDLPVVEKPVPAILMNC 1009

Query: 1053 DNQMSIIWA*NFVYSRK-SWHFRRIHNTVRQLLSN*VISINFIKSKENFTDKF 898
            DNQ+ II   +   + K S H +R   +VR+  ++ VI+++++++ +N  D+F
Sbjct: 1010 DNQIVIIKVNSSKDNMKSSRHVKRRLKSVRKQKNSRVIALDYVQTAKNLADQF 1062



 Score = 51.6 bits (122), Expect(5) = 1e-76
 Identities = 20/42 (47%), Positives = 27/42 (64%)
 Frame = -3

Query: 1904 CHFVKLFYGLKQVPNQ*HKKFDNVMIKNGLKIDECDKCVYYK 1779
            C  +K  YGLK+ P Q H+KFD  +   G  ++E DKCVYY+
Sbjct: 714  CKLLKSLYGLKKAPKQWHEKFDTTLTSTGFIVNEADKCVYYR 755



 Score = 36.6 bits (83), Expect(5) = 1e-76
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = -3

Query: 1403 DIIYLIEKLSRNTSNLRVTHWEVLVKVLK--RCILDYRLHYTRY 1278
            DI + + KLSR  SN    HW+ L +V++  +  + Y +HYT Y
Sbjct: 879  DISFAVSKLSRFVSNPGDDHWQALERVMRYLKGTMSYEIHYTGY 922


>gb|AAT44162.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1302

 Score =  148 bits (373), Expect(4) = 6e-73
 Identities = 73/161 (45%), Positives = 112/161 (69%)
 Frame = -2

Query: 2331 PQSFKEAMSTPKALFWKEVVNNELEPII*NHT*ELVSLPPGNIPIGCKWIFKRKMKSDDF 2152
            P+S  EA ++P A +WKE V +E++ II N T E+   P G  P+GCKW+FK+K++ D  
Sbjct: 791  PKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGT 850

Query: 2151 IDKYKARLVAKGFKQKKCLDYFDMYSPITRITSIPMLIEIVALYKFEINQIDVKTIFRND 1972
            I+KYKARLVAKG+ QK+  D+FD YSP+ R+T+I +L+ + A +   ++Q+DVKT F N 
Sbjct: 851  IEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNG 910

Query: 1971 KLNEKIYIEQPERFIVK**EKKVSFCQIILWLKASAQSMTQ 1849
            +L+E+IY++QP+ F+V+  E KV  C+++  L    Q+  Q
Sbjct: 911  ELDEEIYMDQPDGFVVEGQEGKV--CKLLKSLYGLKQAPKQ 949



 Score = 95.1 bits (235), Expect(4) = 6e-73
 Identities = 51/113 (45%), Positives = 70/113 (61%)
 Frame = -1

Query: 1741 CFYLDDMFIMGTSKNIIKSAKKMLTSNFDIKDLGVTDVILGIKVTRTLDGLVLSQLHYIE 1562
            C Y+DD+ I GT+  +I   K  L+ NFD+KDLGV DVIL IK+ R  +G+ L Q HY+E
Sbjct: 985  CLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVE 1044

Query: 1561 KMLKTFNKFDISSTKIPFDYHNHNLKKSIGRRISHLEYS*IIGSLMYVINYDR 1403
            K+L  F   D   +  P+D  +  L+K+     + LEYS IIGSLMY+ +  R
Sbjct: 1045 KILNRFGYIDSKPSPTPYD-PSLLLRKNKRIARNQLEYSQIIGSLMYLASATR 1096



 Score = 65.5 bits (158), Expect(4) = 6e-73
 Identities = 39/113 (34%), Positives = 67/113 (59%), Gaps = 1/113 (0%)
 Frame = -2

Query: 1233 TFGGAVIL*KSSK*TCIAQSTIES*FINLDKASEEAKWVHHFLEDILLWEKSMTAICVHC 1054
            T GG  +  +S K T + +ST+E+    LD A+ EA+W+   L D+ + EK + AI ++C
Sbjct: 1169 TLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKLVPAILMNC 1228

Query: 1053 DNQMSIIWA*NFVYSRK-SWHFRRIHNTVRQLLSN*VISINFIKSKENFTDKF 898
            DNQ  I+   +   + K S H +R   +VR+L ++ VI++++I++  N  D F
Sbjct: 1229 DNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPF 1281



 Score = 38.1 bits (87), Expect(4) = 6e-73
 Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = -3

Query: 1403 DIIYLIEKLSRNTSNLRVTHWEVLVKVLK--RCILDYRLHYTRYQLYL 1266
            DI + + KLSR TSN    HW  L +V++  +  ++  LHYTRY   L
Sbjct: 1098 DISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTRYPAVL 1145


>gb|AAN61480.1| Putative polyprotein from transposon TNT [Oryza sativa Japonica
            Group]
          Length = 1911

 Score =  147 bits (370), Expect(4) = 8e-73
 Identities = 72/161 (44%), Positives = 112/161 (69%)
 Frame = -2

Query: 2331 PQSFKEAMSTPKALFWKEVVNNELEPII*NHT*ELVSLPPGNIPIGCKWIFKRKMKSDDF 2152
            P+S  EA ++P A +WKE V +E++ II N T E+   P G  P+GCKW+FK+K++ D  
Sbjct: 791  PKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGT 850

Query: 2151 IDKYKARLVAKGFKQKKCLDYFDMYSPITRITSIPMLIEIVALYKFEINQIDVKTIFRND 1972
            I+KYKARLVAKG+ QK+  D+FD YSP+ R+T+I +L+ + A +   ++Q+DVKT F N 
Sbjct: 851  IEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNG 910

Query: 1971 KLNEKIYIEQPERFIVK**EKKVSFCQIILWLKASAQSMTQ 1849
            +L+E+IY++QP+ F+++  E KV  C+++  L    Q+  Q
Sbjct: 911  ELDEEIYMDQPDGFVLEGQEGKV--CKLLKSLYGLKQAPKQ 949



 Score = 96.3 bits (238), Expect(4) = 8e-73
 Identities = 51/113 (45%), Positives = 71/113 (62%)
 Frame = -1

Query: 1741 CFYLDDMFIMGTSKNIIKSAKKMLTSNFDIKDLGVTDVILGIKVTRTLDGLVLSQLHYIE 1562
            C Y+DD+ I GT+  +I   K  L+ NFD+KDLGV DVIL IK+ R  +G+ L Q HY+E
Sbjct: 985  CLYVDDILIFGTNIEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVE 1044

Query: 1561 KMLKTFNKFDISSTKIPFDYHNHNLKKSIGRRISHLEYS*IIGSLMYVINYDR 1403
            K+L  F   D   +  P+D  + +L+K+     + LEYS IIGSLMY+ +  R
Sbjct: 1045 KILNRFGYIDSKPSPTPYD-PSLSLRKNKRIARNQLEYSQIIGSLMYLASATR 1096



 Score = 67.8 bits (164), Expect(4) = 8e-73
 Identities = 40/113 (35%), Positives = 67/113 (59%), Gaps = 1/113 (0%)
 Frame = -2

Query: 1233 TFGGAVIL*KSSK*TCIAQSTIES*FINLDKASEEAKWVHHFLEDILLWEKSMTAICVHC 1054
            T GG  +  +S K T + +ST+E+    LD A+ EA+W+   L D+ + EK + AI ++C
Sbjct: 1169 TLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKPVPAILMNC 1228

Query: 1053 DNQMSIIWA*NFVYSRK-SWHFRRIHNTVRQLLSN*VISINFIKSKENFTDKF 898
            DNQ  I+   N   + K S H +R   +VR+L ++ VI++++I++  N  D F
Sbjct: 1229 DNQTVIVKVNNSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPF 1281



 Score = 35.4 bits (80), Expect(4) = 8e-73
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = -3

Query: 1403 DIIYLIEKLSRNTSNLRVTHWEVLVKVLK--RCILDYRLHYTRYQLYL 1266
            DI + + KLSR TSN    HW  L +V++  +  ++  LHYT Y   L
Sbjct: 1098 DISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVL 1145


>gb|AAR01716.1| putative Gag and Pol polyprotein [Oryza sativa Japonica Group]
          Length = 1302

 Score =  147 bits (370), Expect(4) = 8e-73
 Identities = 72/161 (44%), Positives = 112/161 (69%)
 Frame = -2

Query: 2331 PQSFKEAMSTPKALFWKEVVNNELEPII*NHT*ELVSLPPGNIPIGCKWIFKRKMKSDDF 2152
            P+S  EA ++P A +WKE V +E++ II N T E+   P G  P+GCKW+FK+K++ D  
Sbjct: 791  PKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGT 850

Query: 2151 IDKYKARLVAKGFKQKKCLDYFDMYSPITRITSIPMLIEIVALYKFEINQIDVKTIFRND 1972
            I+KYKARLVAKG+ QK+  D+FD YSP+ R+T+I +L+ + A +   ++Q+DVKT F N 
Sbjct: 851  IEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNG 910

Query: 1971 KLNEKIYIEQPERFIVK**EKKVSFCQIILWLKASAQSMTQ 1849
            +L+E+IY++QP+ F+++  E KV  C+++  L    Q+  Q
Sbjct: 911  ELDEEIYMDQPDGFVLEGQEGKV--CKLLKSLYGLKQAPKQ 949



 Score = 96.3 bits (238), Expect(4) = 8e-73
 Identities = 51/113 (45%), Positives = 71/113 (62%)
 Frame = -1

Query: 1741 CFYLDDMFIMGTSKNIIKSAKKMLTSNFDIKDLGVTDVILGIKVTRTLDGLVLSQLHYIE 1562
            C Y+DD+ I GT+  +I   K  L+ NFD+KDLGV DVIL IK+ R  +G+ L Q HY+E
Sbjct: 985  CLYVDDILIFGTNIEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVE 1044

Query: 1561 KMLKTFNKFDISSTKIPFDYHNHNLKKSIGRRISHLEYS*IIGSLMYVINYDR 1403
            K+L  F   D   +  P+D  + +L+K+     + LEYS IIGSLMY+ +  R
Sbjct: 1045 KILNRFGYIDSKPSPTPYD-PSLSLRKNKRIARNQLEYSQIIGSLMYLASATR 1096



 Score = 67.8 bits (164), Expect(4) = 8e-73
 Identities = 40/113 (35%), Positives = 67/113 (59%), Gaps = 1/113 (0%)
 Frame = -2

Query: 1233 TFGGAVIL*KSSK*TCIAQSTIES*FINLDKASEEAKWVHHFLEDILLWEKSMTAICVHC 1054
            T GG  +  +S K T + +ST+E+    LD A+ EA+W+   L D+ + EK + AI ++C
Sbjct: 1169 TLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKPVPAILMNC 1228

Query: 1053 DNQMSIIWA*NFVYSRK-SWHFRRIHNTVRQLLSN*VISINFIKSKENFTDKF 898
            DNQ  I+   N   + K S H +R   +VR+L ++ VI++++I++  N  D F
Sbjct: 1229 DNQTVIVKVNNSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPF 1281



 Score = 35.4 bits (80), Expect(4) = 8e-73
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = -3

Query: 1403 DIIYLIEKLSRNTSNLRVTHWEVLVKVLK--RCILDYRLHYTRYQLYL 1266
            DI + + KLSR TSN    HW  L +V++  +  ++  LHYT Y   L
Sbjct: 1098 DISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVL 1145


>emb|CAE04541.2| OSJNBa0040D17.9 [Oryza sativa Japonica Group]
          Length = 1319

 Score =  148 bits (373), Expect(4) = 1e-72
 Identities = 73/161 (45%), Positives = 112/161 (69%)
 Frame = -2

Query: 2331 PQSFKEAMSTPKALFWKEVVNNELEPII*NHT*ELVSLPPGNIPIGCKWIFKRKMKSDDF 2152
            P+S  EA ++P A +WKE V +E++ II N T E+   P G  P+GCKW+FK+K++ D  
Sbjct: 791  PKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGT 850

Query: 2151 IDKYKARLVAKGFKQKKCLDYFDMYSPITRITSIPMLIEIVALYKFEINQIDVKTIFRND 1972
            I+KYKARLVAKG+ QK+  D+FD YSP+ R+T+I +L+ + A +   ++Q+DVKT F N 
Sbjct: 851  IEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNG 910

Query: 1971 KLNEKIYIEQPERFIVK**EKKVSFCQIILWLKASAQSMTQ 1849
            +L+E+IY++QP+ F+V+  E KV  C+++  L    Q+  Q
Sbjct: 911  ELDEEIYMDQPDGFVVEGQEGKV--CKLLKSLYGLKQAPKQ 949



 Score = 95.1 bits (235), Expect(4) = 1e-72
 Identities = 51/113 (45%), Positives = 70/113 (61%)
 Frame = -1

Query: 1741 CFYLDDMFIMGTSKNIIKSAKKMLTSNFDIKDLGVTDVILGIKVTRTLDGLVLSQLHYIE 1562
            C Y+DD+ I GT+  +I   K  L+ NFD+KDLGV DVIL IK+ R  +G+ L Q HY+E
Sbjct: 985  CLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVE 1044

Query: 1561 KMLKTFNKFDISSTKIPFDYHNHNLKKSIGRRISHLEYS*IIGSLMYVINYDR 1403
            K+L  F   D   +  P+D  +  L+K+     + LEYS IIGSLMY+ +  R
Sbjct: 1045 KILNRFGYIDSKPSPTPYD-PSLLLRKNKRIARNQLEYSQIIGSLMYLASATR 1096



 Score = 65.9 bits (159), Expect(4) = 1e-72
 Identities = 39/113 (34%), Positives = 67/113 (59%), Gaps = 1/113 (0%)
 Frame = -2

Query: 1233 TFGGAVIL*KSSK*TCIAQSTIES*FINLDKASEEAKWVHHFLEDILLWEKSMTAICVHC 1054
            T GG  +  +S K T + +ST+E+    LD A+ EA+W+   L D+ + EK + AI ++C
Sbjct: 1169 TLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKPVPAILMNC 1228

Query: 1053 DNQMSIIWA*NFVYSRK-SWHFRRIHNTVRQLLSN*VISINFIKSKENFTDKF 898
            DNQ  I+   +   + K S H +R   +VR+L ++ VI++++I++  N  D F
Sbjct: 1229 DNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPF 1281



 Score = 37.0 bits (84), Expect(4) = 1e-72
 Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = -3

Query: 1403 DIIYLIEKLSRNTSNLRVTHWEVLVKVLK--RCILDYRLHYTRYQLYL 1266
            DI + + KLSR TSN    HW VL +V++  +  ++  LHYT Y   L
Sbjct: 1098 DISFAVSKLSRFTSNPGDDHWRVLERVMRYLKGTVELGLHYTGYPAVL 1145


>gb|AAO60021.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|108711758|gb|ABF99553.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1224

 Score =  148 bits (373), Expect(4) = 1e-72
 Identities = 73/161 (45%), Positives = 112/161 (69%)
 Frame = -2

Query: 2331 PQSFKEAMSTPKALFWKEVVNNELEPII*NHT*ELVSLPPGNIPIGCKWIFKRKMKSDDF 2152
            P+S  EA ++P A +WKE V +E++ II N T E+   P G  P+GCKW+FK+K++ D  
Sbjct: 713  PKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCQPVGCKWVFKKKLRPDGT 772

Query: 2151 IDKYKARLVAKGFKQKKCLDYFDMYSPITRITSIPMLIEIVALYKFEINQIDVKTIFRND 1972
            I+KYKARLVAKG+ QK+  D+FD YSP+ R+T+I +L+ + A +   ++Q+DVKT F N 
Sbjct: 773  IEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNG 832

Query: 1971 KLNEKIYIEQPERFIVK**EKKVSFCQIILWLKASAQSMTQ 1849
            +L+E+IY++QP+ F+V+  E KV  C+++  L    Q+  Q
Sbjct: 833  ELDEEIYMDQPDGFVVEGQEGKV--CKLLKSLYGLKQAPKQ 871



 Score = 94.4 bits (233), Expect(4) = 1e-72
 Identities = 53/117 (45%), Positives = 70/117 (59%), Gaps = 4/117 (3%)
 Frame = -1

Query: 1741 CFYLDDMFIMGTSKNIIKSAKKMLTSNFDIKDLGVTDVILGIKVTRTLDGLVLSQLHYIE 1562
            C Y+DD+ I GT+  +I   K  L+ NFD+KDLGV DVIL IK+ R  +G+ L Q HY+E
Sbjct: 907  CLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVE 966

Query: 1561 KMLKTFNKFDISSTKIPFD----YHNHNLKKSIGRRISHLEYS*IIGSLMYVINYDR 1403
            K+L  F   D   +  P+D     H +   K I R  + LEYS IIGSLMY+ +  R
Sbjct: 967  KILNRFGYIDSKPSPTPYDPSLLLHKN---KRIAR--NQLEYSQIIGSLMYLASATR 1018



 Score = 68.2 bits (165), Expect(4) = 1e-72
 Identities = 40/113 (35%), Positives = 68/113 (60%), Gaps = 1/113 (0%)
 Frame = -2

Query: 1233 TFGGAVIL*KSSK*TCIAQSTIES*FINLDKASEEAKWVHHFLEDILLWEKSMTAICVHC 1054
            T GG  +  +S K T + +ST+E+    LD A+ EA+W+   L D+ + EK + AI ++C
Sbjct: 1091 TLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKPVPAILMNC 1150

Query: 1053 DNQMSIIWA*NFVYSRK-SWHFRRIHNTVRQLLSN*VISINFIKSKENFTDKF 898
            DNQM I+   +   + K S H +R   +VR+L ++ VI++++I++  N  D F
Sbjct: 1151 DNQMVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPF 1203



 Score = 35.4 bits (80), Expect(4) = 1e-72
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = -3

Query: 1403 DIIYLIEKLSRNTSNLRVTHWEVLVKVLK--RCILDYRLHYTRYQLYL 1266
            DI + + KLSR TSN    HW  L +V++  +  ++  LHYT Y   L
Sbjct: 1020 DISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVL 1067


>gb|AAR01682.1| putative gag and pol protein [Oryza sativa Japonica Group]
          Length = 1302

 Score =  147 bits (370), Expect(4) = 2e-72
 Identities = 72/161 (44%), Positives = 112/161 (69%)
 Frame = -2

Query: 2331 PQSFKEAMSTPKALFWKEVVNNELEPII*NHT*ELVSLPPGNIPIGCKWIFKRKMKSDDF 2152
            P+S  EA ++P A +WKE V +E++ II N T E+   P G  P+GCKW+FK+K++ D  
Sbjct: 791  PKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGT 850

Query: 2151 IDKYKARLVAKGFKQKKCLDYFDMYSPITRITSIPMLIEIVALYKFEINQIDVKTIFRND 1972
            I+KYKARLVAKG+ QK+  D+FD YSP+ R+T+I +L+ + A +   ++Q+DVKT F N 
Sbjct: 851  IEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNG 910

Query: 1971 KLNEKIYIEQPERFIVK**EKKVSFCQIILWLKASAQSMTQ 1849
            +L+E+IY++QP+ F+++  E KV  C+++  L    Q+  Q
Sbjct: 911  ELDEEIYMDQPDGFVLEGQEGKV--CKLLKSLYGLKQAPKQ 949



 Score = 96.7 bits (239), Expect(4) = 2e-72
 Identities = 51/113 (45%), Positives = 71/113 (62%)
 Frame = -1

Query: 1741 CFYLDDMFIMGTSKNIIKSAKKMLTSNFDIKDLGVTDVILGIKVTRTLDGLVLSQLHYIE 1562
            C Y+DD+ I GT+  +I   K  L+ NFD+KDLGV DVIL IK+ R  +G+ L Q HY+E
Sbjct: 985  CLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVE 1044

Query: 1561 KMLKTFNKFDISSTKIPFDYHNHNLKKSIGRRISHLEYS*IIGSLMYVINYDR 1403
            K+L  F   D   +  P+D  + +L+K+     + LEYS IIGSLMY+ +  R
Sbjct: 1045 KILNRFGYIDSKPSPTPYD-PSLSLRKNKRIARNQLEYSQIIGSLMYLASATR 1096



 Score = 65.9 bits (159), Expect(4) = 2e-72
 Identities = 39/113 (34%), Positives = 67/113 (59%), Gaps = 1/113 (0%)
 Frame = -2

Query: 1233 TFGGAVIL*KSSK*TCIAQSTIES*FINLDKASEEAKWVHHFLEDILLWEKSMTAICVHC 1054
            T GG  +  +S K T + +ST+E+    LD A+ EA+W+   L D+ + EK + AI ++C
Sbjct: 1169 TLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKPVPAILMNC 1228

Query: 1053 DNQMSIIWA*NFVYSRK-SWHFRRIHNTVRQLLSN*VISINFIKSKENFTDKF 898
            DNQ  I+   +   + K S H +R   +VR+L ++ VI++++I++  N  D F
Sbjct: 1229 DNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPF 1281



 Score = 35.4 bits (80), Expect(4) = 2e-72
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = -3

Query: 1403 DIIYLIEKLSRNTSNLRVTHWEVLVKVLK--RCILDYRLHYTRYQLYL 1266
            DI + + KLSR TSN    HW  L +V++  +  ++  LHYT Y   L
Sbjct: 1098 DISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVL 1145


>gb|ABA91402.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 2027

 Score =  148 bits (373), Expect(4) = 3e-72
 Identities = 73/161 (45%), Positives = 112/161 (69%)
 Frame = -2

Query: 2331 PQSFKEAMSTPKALFWKEVVNNELEPII*NHT*ELVSLPPGNIPIGCKWIFKRKMKSDDF 2152
            P+S  EA ++P A +WKE V +E++ II N T E+   P G  P+GCKW+FK+K++ D  
Sbjct: 986  PKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGT 1045

Query: 2151 IDKYKARLVAKGFKQKKCLDYFDMYSPITRITSIPMLIEIVALYKFEINQIDVKTIFRND 1972
            I+KYKARLVAKG+ QK+  D+FD YSP+ R+T+I +L+ + A +   ++Q+DVKT F N 
Sbjct: 1046 IEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNG 1105

Query: 1971 KLNEKIYIEQPERFIVK**EKKVSFCQIILWLKASAQSMTQ 1849
            +L+E+IY++QP+ F+V+  E KV  C+++  L    Q+  Q
Sbjct: 1106 ELDEEIYMDQPDGFVVEGQEGKV--CKLLKSLYGLKQAPKQ 1144



 Score = 95.1 bits (235), Expect(4) = 3e-72
 Identities = 51/113 (45%), Positives = 70/113 (61%)
 Frame = -1

Query: 1741 CFYLDDMFIMGTSKNIIKSAKKMLTSNFDIKDLGVTDVILGIKVTRTLDGLVLSQLHYIE 1562
            C Y+DD+ I GT+  +I   K  L+ NFD+KDLGV DVIL IK+ R  +G+ L Q HY+E
Sbjct: 1180 CLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVE 1239

Query: 1561 KMLKTFNKFDISSTKIPFDYHNHNLKKSIGRRISHLEYS*IIGSLMYVINYDR 1403
            K+L  F   D   +  P+D  +  L+K+     + LEYS IIGSLMY+ +  R
Sbjct: 1240 KILNRFGYIDSKPSPTPYD-PSLLLRKNKRIARNQLEYSQIIGSLMYLASATR 1291



 Score = 65.9 bits (159), Expect(4) = 3e-72
 Identities = 39/113 (34%), Positives = 67/113 (59%), Gaps = 1/113 (0%)
 Frame = -2

Query: 1233 TFGGAVIL*KSSK*TCIAQSTIES*FINLDKASEEAKWVHHFLEDILLWEKSMTAICVHC 1054
            T GG  +  +S K T + +ST+E+    LD A+ EA+W+   L D+ + EK + AI ++C
Sbjct: 1364 TLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKPVPAILMNC 1423

Query: 1053 DNQMSIIWA*NFVYSRK-SWHFRRIHNTVRQLLSN*VISINFIKSKENFTDKF 898
            DNQ  I+   +   + K S H +R   +VR+L ++ VI++++I++  N  D F
Sbjct: 1424 DNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPF 1476



 Score = 35.4 bits (80), Expect(4) = 3e-72
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = -3

Query: 1403 DIIYLIEKLSRNTSNLRVTHWEVLVKVLK--RCILDYRLHYTRYQLYL 1266
            DI + + KLSR TSN    HW  L +V++  +  ++  LHYT Y   L
Sbjct: 1293 DISFAVSKLSRFTSNPGDDHWRALERVMRYLKDTVELGLHYTGYPAVL 1340


>gb|ABF96702.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1518

 Score =  148 bits (373), Expect(4) = 3e-72
 Identities = 73/161 (45%), Positives = 112/161 (69%)
 Frame = -2

Query: 2331 PQSFKEAMSTPKALFWKEVVNNELEPII*NHT*ELVSLPPGNIPIGCKWIFKRKMKSDDF 2152
            P+S  EA ++P A +WKE V +E++ II N T E+   P G  P+GCKW+FK+K++ D  
Sbjct: 1007 PKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGT 1066

Query: 2151 IDKYKARLVAKGFKQKKCLDYFDMYSPITRITSIPMLIEIVALYKFEINQIDVKTIFRND 1972
            I+KYKARLVAKG+ QK+  D+FD YSP+ R+T+I +L+ + A +   ++Q+DVKT F N 
Sbjct: 1067 IEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNG 1126

Query: 1971 KLNEKIYIEQPERFIVK**EKKVSFCQIILWLKASAQSMTQ 1849
            +L+E+IY++QP+ F+V+  E KV  C+++  L    Q+  Q
Sbjct: 1127 ELDEEIYMDQPDGFVVEGQEGKV--CKLLKSLYGLKQAPKQ 1165



 Score = 95.1 bits (235), Expect(4) = 3e-72
 Identities = 51/113 (45%), Positives = 70/113 (61%)
 Frame = -1

Query: 1741 CFYLDDMFIMGTSKNIIKSAKKMLTSNFDIKDLGVTDVILGIKVTRTLDGLVLSQLHYIE 1562
            C Y+DD+ I GT+  +I   K  L+ NFD+KDLGV DVIL IK+ R  +G+ L Q HY+E
Sbjct: 1201 CLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVE 1260

Query: 1561 KMLKTFNKFDISSTKIPFDYHNHNLKKSIGRRISHLEYS*IIGSLMYVINYDR 1403
            K+L  F   D   +  P+D  +  L+K+     + LEYS IIGSLMY+ +  R
Sbjct: 1261 KILNRFGYIDSKPSPTPYD-PSLLLRKNKRIARNQLEYSQIIGSLMYLASATR 1312



 Score = 65.9 bits (159), Expect(4) = 3e-72
 Identities = 39/113 (34%), Positives = 67/113 (59%), Gaps = 1/113 (0%)
 Frame = -2

Query: 1233 TFGGAVIL*KSSK*TCIAQSTIES*FINLDKASEEAKWVHHFLEDILLWEKSMTAICVHC 1054
            T GG  +  +S K T + +ST+E+    LD A+ EA+W+   L D+ + EK + AI ++C
Sbjct: 1385 TLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKPVPAILMNC 1444

Query: 1053 DNQMSIIWA*NFVYSRK-SWHFRRIHNTVRQLLSN*VISINFIKSKENFTDKF 898
            DNQ  I+   +   + K S H +R   +VR+L ++ VI++++I++  N  D F
Sbjct: 1445 DNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPF 1497



 Score = 35.4 bits (80), Expect(4) = 3e-72
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = -3

Query: 1403 DIIYLIEKLSRNTSNLRVTHWEVLVKVLK--RCILDYRLHYTRYQLYL 1266
            DI + + KLSR TSN    HW  L +V++  +  ++  LHYT Y   L
Sbjct: 1314 DISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVL 1361


>gb|AAU44026.2| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1391

 Score =  148 bits (373), Expect(4) = 3e-72
 Identities = 73/161 (45%), Positives = 112/161 (69%)
 Frame = -2

Query: 2331 PQSFKEAMSTPKALFWKEVVNNELEPII*NHT*ELVSLPPGNIPIGCKWIFKRKMKSDDF 2152
            P+S  EA ++P A +WKE V +E++ II N T E+   P G  P+GCKW+FK+K++ D  
Sbjct: 880  PKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGT 939

Query: 2151 IDKYKARLVAKGFKQKKCLDYFDMYSPITRITSIPMLIEIVALYKFEINQIDVKTIFRND 1972
            I+KYKARLVAKG+ QK+  D+FD YSP+ R+T+I +L+ + A +   ++Q+DVKT F N 
Sbjct: 940  IEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNG 999

Query: 1971 KLNEKIYIEQPERFIVK**EKKVSFCQIILWLKASAQSMTQ 1849
            +L+E+IY++QP+ F+V+  E KV  C+++  L    Q+  Q
Sbjct: 1000 ELDEEIYMDQPDGFVVEGQEGKV--CKLLKSLYGLKQAPKQ 1038



 Score = 95.1 bits (235), Expect(4) = 3e-72
 Identities = 51/113 (45%), Positives = 70/113 (61%)
 Frame = -1

Query: 1741 CFYLDDMFIMGTSKNIIKSAKKMLTSNFDIKDLGVTDVILGIKVTRTLDGLVLSQLHYIE 1562
            C Y+DD+ I GT+  +I   K  L+ NFD+KDLGV DVIL IK+ R  +G+ L Q HY+E
Sbjct: 1074 CLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVE 1133

Query: 1561 KMLKTFNKFDISSTKIPFDYHNHNLKKSIGRRISHLEYS*IIGSLMYVINYDR 1403
            K+L  F   D   +  P+D  +  L+K+     + LEYS IIGSLMY+ +  R
Sbjct: 1134 KILNRFGYIDSKPSPTPYD-PSLLLRKNKRIARNQLEYSQIIGSLMYLASATR 1185



 Score = 65.9 bits (159), Expect(4) = 3e-72
 Identities = 39/113 (34%), Positives = 67/113 (59%), Gaps = 1/113 (0%)
 Frame = -2

Query: 1233 TFGGAVIL*KSSK*TCIAQSTIES*FINLDKASEEAKWVHHFLEDILLWEKSMTAICVHC 1054
            T GG  +  +S K T + +ST+E+    LD A+ EA+W+   L D+ + EK + AI ++C
Sbjct: 1258 TLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKPVPAILMNC 1317

Query: 1053 DNQMSIIWA*NFVYSRK-SWHFRRIHNTVRQLLSN*VISINFIKSKENFTDKF 898
            DNQ  I+   +   + K S H +R   +VR+L ++ VI++++I++  N  D F
Sbjct: 1318 DNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPF 1370



 Score = 35.4 bits (80), Expect(4) = 3e-72
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = -3

Query: 1403 DIIYLIEKLSRNTSNLRVTHWEVLVKVLK--RCILDYRLHYTRYQLYL 1266
            DI + + KLSR TSN    HW  L +V++  +  ++  LHYT Y   L
Sbjct: 1187 DISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVL 1234


>emb|CAD40744.2| OSJNBa0072D21.4 [Oryza sativa Japonica Group]
          Length = 1319

 Score =  148 bits (373), Expect(4) = 3e-72
 Identities = 73/161 (45%), Positives = 112/161 (69%)
 Frame = -2

Query: 2331 PQSFKEAMSTPKALFWKEVVNNELEPII*NHT*ELVSLPPGNIPIGCKWIFKRKMKSDDF 2152
            P+S  EA ++P A +WKE V +E++ II N T E+   P G  P+GCKW+FK+K++ D  
Sbjct: 791  PKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGT 850

Query: 2151 IDKYKARLVAKGFKQKKCLDYFDMYSPITRITSIPMLIEIVALYKFEINQIDVKTIFRND 1972
            I+KYKARLVAKG+ QK+  D+FD YSP+ R+T+I +L+ + A +   ++Q+DVKT F N 
Sbjct: 851  IEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNG 910

Query: 1971 KLNEKIYIEQPERFIVK**EKKVSFCQIILWLKASAQSMTQ 1849
            +L+E+IY++QP+ F+V+  E KV  C+++  L    Q+  Q
Sbjct: 911  ELDEEIYMDQPDGFVVEGQEGKV--CKLLKSLYGLKQAPKQ 949



 Score = 95.1 bits (235), Expect(4) = 3e-72
 Identities = 51/113 (45%), Positives = 70/113 (61%)
 Frame = -1

Query: 1741 CFYLDDMFIMGTSKNIIKSAKKMLTSNFDIKDLGVTDVILGIKVTRTLDGLVLSQLHYIE 1562
            C Y+DD+ I GT+  +I   K  L+ NFD+KDLGV DVIL IK+ R  +G+ L Q HY+E
Sbjct: 985  CLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVE 1044

Query: 1561 KMLKTFNKFDISSTKIPFDYHNHNLKKSIGRRISHLEYS*IIGSLMYVINYDR 1403
            K+L  F   D   +  P+D  +  L+K+     + LEYS IIGSLMY+ +  R
Sbjct: 1045 KILNRFGYIDSKPSPTPYD-PSLLLRKNKRIARNQLEYSQIIGSLMYLASATR 1096



 Score = 65.9 bits (159), Expect(4) = 3e-72
 Identities = 39/113 (34%), Positives = 67/113 (59%), Gaps = 1/113 (0%)
 Frame = -2

Query: 1233 TFGGAVIL*KSSK*TCIAQSTIES*FINLDKASEEAKWVHHFLEDILLWEKSMTAICVHC 1054
            T GG  +  +S K T + +ST+E+    LD A+ EA+W+   L D+ + EK + AI ++C
Sbjct: 1169 TLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKPVPAILMNC 1228

Query: 1053 DNQMSIIWA*NFVYSRK-SWHFRRIHNTVRQLLSN*VISINFIKSKENFTDKF 898
            DNQ  I+   +   + K S H +R   +VR+L ++ VI++++I++  N  D F
Sbjct: 1229 DNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPF 1281



 Score = 35.4 bits (80), Expect(4) = 3e-72
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = -3

Query: 1403 DIIYLIEKLSRNTSNLRVTHWEVLVKVLK--RCILDYRLHYTRYQLYL 1266
            DI + + KLSR TSN    HW  L +V++  +  ++  LHYT Y   L
Sbjct: 1098 DISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVL 1145


>emb|CAE01299.2| OSJNBa0020P07.16 [Oryza sativa Japonica Group]
          Length = 1314

 Score =  148 bits (373), Expect(4) = 3e-72
 Identities = 73/161 (45%), Positives = 112/161 (69%)
 Frame = -2

Query: 2331 PQSFKEAMSTPKALFWKEVVNNELEPII*NHT*ELVSLPPGNIPIGCKWIFKRKMKSDDF 2152
            P+S  EA ++P A +WKE V +E++ II N T E+   P G  P+GCKW+FK+K++ D  
Sbjct: 763  PKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTEQPYGCKPVGCKWVFKKKLRPDGT 822

Query: 2151 IDKYKARLVAKGFKQKKCLDYFDMYSPITRITSIPMLIEIVALYKFEINQIDVKTIFRND 1972
            I+KYKARLVAKG+ QK+  D+FD YSP+ R+T+I +L+ + A +   ++Q+DVKT F N 
Sbjct: 823  IEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNG 882

Query: 1971 KLNEKIYIEQPERFIVK**EKKVSFCQIILWLKASAQSMTQ 1849
            +L+E+IY++QP+ F+V+  E KV  C+++  L    Q+  Q
Sbjct: 883  ELDEEIYMDQPDGFVVEGQEGKV--CKLLKSLYGLKQAPKQ 921



 Score = 95.1 bits (235), Expect(4) = 3e-72
 Identities = 51/113 (45%), Positives = 70/113 (61%)
 Frame = -1

Query: 1741 CFYLDDMFIMGTSKNIIKSAKKMLTSNFDIKDLGVTDVILGIKVTRTLDGLVLSQLHYIE 1562
            C Y+DD+ I GT+  +I   K  L+ NFD+KDLGV DVIL IK+ R  +G+ L Q HY+E
Sbjct: 957  CLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVE 1016

Query: 1561 KMLKTFNKFDISSTKIPFDYHNHNLKKSIGRRISHLEYS*IIGSLMYVINYDR 1403
            K+L  F   D   +  P+D  +  L+K+     + LEYS IIGSLMY+ +  R
Sbjct: 1017 KILNRFGYIDSKPSPTPYD-PSLLLRKNKRIARNQLEYSQIIGSLMYLASATR 1068



 Score = 65.9 bits (159), Expect(4) = 3e-72
 Identities = 39/113 (34%), Positives = 67/113 (59%), Gaps = 1/113 (0%)
 Frame = -2

Query: 1233 TFGGAVIL*KSSK*TCIAQSTIES*FINLDKASEEAKWVHHFLEDILLWEKSMTAICVHC 1054
            T GG  +  +S K T + +ST+E+    LD A+ EA+W+   L D+ + EK + AI ++C
Sbjct: 1141 TLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKPVPAILMNC 1200

Query: 1053 DNQMSIIWA*NFVYSRK-SWHFRRIHNTVRQLLSN*VISINFIKSKENFTDKF 898
            DNQ  I+   +   + K S H +R   +VR+L ++ VI++++I++  N  D F
Sbjct: 1201 DNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPF 1253



 Score = 35.4 bits (80), Expect(4) = 3e-72
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = -3

Query: 1403 DIIYLIEKLSRNTSNLRVTHWEVLVKVLK--RCILDYRLHYTRYQLYL 1266
            DI + + KLSR TSN    HW  L +V++  +  ++  LHYT Y   L
Sbjct: 1070 DISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVL 1117


>gb|AAP20858.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
          Length = 1302

 Score =  148 bits (373), Expect(4) = 3e-72
 Identities = 73/161 (45%), Positives = 112/161 (69%)
 Frame = -2

Query: 2331 PQSFKEAMSTPKALFWKEVVNNELEPII*NHT*ELVSLPPGNIPIGCKWIFKRKMKSDDF 2152
            P+S  EA ++P A +WKE V +E++ II N T E+   P G  P+GCKW+FK+K++ D  
Sbjct: 791  PKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGT 850

Query: 2151 IDKYKARLVAKGFKQKKCLDYFDMYSPITRITSIPMLIEIVALYKFEINQIDVKTIFRND 1972
            I+KYKARLVAKG+ QK+  D+FD YSP+ R+T+I +L+ + A +   ++Q+DVKT F N 
Sbjct: 851  IEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNG 910

Query: 1971 KLNEKIYIEQPERFIVK**EKKVSFCQIILWLKASAQSMTQ 1849
            +L+E+IY++QP+ F+V+  E KV  C+++  L    Q+  Q
Sbjct: 911  ELDEEIYMDQPDGFVVEGQEGKV--CKLLKSLYGLKQAPKQ 949



 Score = 95.1 bits (235), Expect(4) = 3e-72
 Identities = 51/113 (45%), Positives = 70/113 (61%)
 Frame = -1

Query: 1741 CFYLDDMFIMGTSKNIIKSAKKMLTSNFDIKDLGVTDVILGIKVTRTLDGLVLSQLHYIE 1562
            C Y+DD+ I GT+  +I   K  L+ NFD+KDLGV DVIL IK+ R  +G+ L Q HY+E
Sbjct: 985  CLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVE 1044

Query: 1561 KMLKTFNKFDISSTKIPFDYHNHNLKKSIGRRISHLEYS*IIGSLMYVINYDR 1403
            K+L  F   D   +  P+D  +  L+K+     + LEYS IIGSLMY+ +  R
Sbjct: 1045 KILNRFGYIDSKPSPTPYD-PSLLLRKNKRIARNQLEYSQIIGSLMYLASATR 1096



 Score = 65.9 bits (159), Expect(4) = 3e-72
 Identities = 39/113 (34%), Positives = 67/113 (59%), Gaps = 1/113 (0%)
 Frame = -2

Query: 1233 TFGGAVIL*KSSK*TCIAQSTIES*FINLDKASEEAKWVHHFLEDILLWEKSMTAICVHC 1054
            T GG  +  +S K T + +ST+E+    LD A+ EA+W+   L D+ + EK + AI ++C
Sbjct: 1169 TLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKPVPAILMNC 1228

Query: 1053 DNQMSIIWA*NFVYSRK-SWHFRRIHNTVRQLLSN*VISINFIKSKENFTDKF 898
            DNQ  I+   +   + K S H +R   +VR+L ++ VI++++I++  N  D F
Sbjct: 1229 DNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPF 1281



 Score = 35.4 bits (80), Expect(4) = 3e-72
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = -3

Query: 1403 DIIYLIEKLSRNTSNLRVTHWEVLVKVLK--RCILDYRLHYTRYQLYL 1266
            DI + + KLSR TSN    HW  L +V++  +  ++  LHYT Y   L
Sbjct: 1098 DISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVL 1145