BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia22_contig00014326
         (2588 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   245   6e-62
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]        230   2e-57
gb|AFB73911.1| polyprotein [Citrus sinensis]                          229   6e-57
gb|AFB73912.1| polyprotein [Citrus sinensis]                          226   5e-56
ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707...   224   2e-55
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]     219   4e-54
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc...   219   4e-54
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   214   1e-52
ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group] g...   214   1e-52
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]                208   1e-50
gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]     205   1e-49
gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vu...   204   2e-49
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]                  203   4e-49
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]              203   4e-49
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]              202   5e-49
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     201   1e-48
gb|AAL31093.1|AC091749_22 putative retrotransposon-related prote...   201   1e-48
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]              199   5e-48
gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein ...   199   5e-48
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]              197   2e-47

>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
            copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  245 bits (626), Expect = 6e-62
 Identities = 160/473 (33%), Positives = 233/473 (49%), Gaps = 3/473 (0%)
 Frame = -3

Query: 1638 GRNNFKAWQMDCKXXXXXXXXXXXXXDKNKPSEKVTED*AEK*NKMDQKACSTIHLCLSW 1459
            GRN+F  WQ+  K                  +  VT + A     +++KA STI LCL+ 
Sbjct: 13   GRNSFSLWQI--KMRALLKQQGFWAPLSKDKNAVVTPEMAI----LEEKAHSTIMLCLAD 66

Query: 1458 NVAYNFADEMTAKGI*DKLQALYLQNDQMSVTYLQKKLFTFRLQPGRLMTDHINEFECLY 1279
            +V    +DE TA G+  KL++LY+     +   L+++LF  R+  G  + +H+ +   L 
Sbjct: 67   DVITEVSDEETAAGLWLKLESLYMTKSLTNKLLLKQRLFGLRMAEGTQLREHLEQLNTLL 126

Query: 1278 SDCISLGAKFEDSQKALFLLIFLLPKWEPFVDQMTTLKKEKFVYSDIVQAVLAKASRKGT 1099
             +  ++  K ED   AL LL+ L   +E FV Q   + K+     ++  A+ ++  R   
Sbjct: 127  LELRNIDVKIEDEDAALILLVSLPMSFENFV-QSFIVGKDTVSLEEVRSALHSRELRHKA 185

Query: 1098 LNEEVQADDLSVTWGXXXXXXXXXXXXXXXXRGRDMFKVECYKCKRKGHYKKDCPELKDN 919
                       +                   +G     V C  CK KGH+K DCP+ K  
Sbjct: 186  NGTSTDIQPSGLFTSSRKGRKNGGKKNKPMSKGAKPDDV-CNYCKEKGHWKFDCPKKKKQ 244

Query: 918  HNKQXXXXXXXXXXXXXXXXXEDILIGGDLAQALTAGSHDHLYDGWMLDTGALYHLCPVR 739
              KQ                  DI        AL A  H H  D W+LD+GA YH+CP R
Sbjct: 245  SEKQSVSAAVAEEDTNSEE---DI--------ALVADEHTHHSDVWVLDSGASYHICPRR 293

Query: 738  EWFTTYREVKGSSVMMGDSRPCKTMGVGTVKFQLTDGSCRQLIEVCHIPALSKGLISLGM 559
            EWFTTY +V G S+ M +S  CK +G G++K +  DGS   L EV H+P ++K LISL +
Sbjct: 294  EWFTTYEQVDGGSISMANSSVCKVVGTGSIKIRTHDGSFCTLNEVRHVPLMTKNLISLSL 353

Query: 558  LEAQGYRYVGENGYCNVYFGDRLLLSAVRHANLY--QGSVVEGGAMV-STVVDEKSLARA 388
            L+++G+ + G++G   V+ G  L+L  V    LY  QGS V G A V S+   +K + + 
Sbjct: 354  LDSKGFSWSGKDGVLRVWKGSNLILKGVMRGTLYFLQGSTVTGSAHVASSEFHQKDMTK- 412

Query: 387  QLWHMRLGHVGVSELRTLSKRGLLGGDKMAKLDFCEHCVYGKQCRVSFGDGIH 229
             LWH+RLGH+G   ++ LSK  LL G K+  L+FCEHCV+GK  R  F   IH
Sbjct: 413  -LWHIRLGHMGERGMQILSKEDLLAGHKVKSLEFCEHCVFGKLHRNKFPKAIH 464


>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
          Length = 1181

 Score =  230 bits (587), Expect = 2e-57
 Identities = 155/451 (34%), Positives = 223/451 (49%), Gaps = 13/451 (2%)
 Frame = -3

Query: 1542 EKVTED*AEK*NKMDQKACSTIHLCLSWNVAYNFADEMTAKGI*DKLQALYLQNDQMSVT 1363
            +K T+D +    K D+KA S IHL LS N+      E TA G+  KL+ + +  D  S  
Sbjct: 41   DKRTQDWSNDEKKRDRKAMSYIHLHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKM 100

Query: 1362 YLQKKLFTFRLQPGRLMTDHINEFECLYSDCISLGAKFEDSQKALFLLIFLLPKWEPFVD 1183
            +L++KLF  +LQ    + DH++ F+ + +D  S+  K+++   AL LL  L   +  F D
Sbjct: 101  HLKQKLFLHKLQDDGSVMDHLSAFKEIVADLESMEVKYDEKDLALILLCSLPSSYANFRD 160

Query: 1182 QMTTLKKEKFVYSDIVQAVLAKASRKGTLNEE---VQADDLSVTWGXXXXXXXXXXXXXX 1012
             +    ++     ++  A+ AK   K  +  E    QA+ L V                 
Sbjct: 161  TIL-YSRDTLTLKEVYDALHAKEKMKKMVPSEGSNSQAEGLVVRGSQQEKNTNNKSRDKS 219

Query: 1011 XXRGRDMFKVE-----CYKCKRKGHYKKDCPELKDNHNKQXXXXXXXXXXXXXXXXXE-D 850
                R   K       C  CKR GH    C +L+D   +                    D
Sbjct: 220  SSSYRGRSKSRGRYKSCKYCKRDGHDISKCWKLQDKDKRTGKYIPKGKKEEEGKAAVVTD 279

Query: 849  ILIGGDLAQALTAGSHDHLYDGWMLDTGALYHLCPVREWFTTYREVKGSSVMMGDSRPCK 670
                 +L  A    +     D W+LDT   YH+CP R+WF TY  V+G +V+MGD  PC+
Sbjct: 280  EKSDAELLVAYAGCAQTS--DQWILDTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCE 337

Query: 669  TMGVGTVKFQLTDGSCRQLIEVCHIPALSKGLISLGMLEAQGYRYVGENGYCNVYFGDRL 490
              G+GTV+ ++ DG  R L +V HIP L + LISL  L+ +GY+Y G +G   V  G  +
Sbjct: 338  VAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLV 397

Query: 489  LLSA-VRHANLY--QGSVVEGGAMVSTVVDEKSLARA-QLWHMRLGHVGVSELRTLSKRG 322
            ++ A ++ ANLY  QG+ + G   V+TV D  S + A  LWHMRLGH+    L  LSKRG
Sbjct: 398  VMKASIKSANLYHLQGTTILGN--VATVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRG 455

Query: 321  LLGGDKMAKLDFCEHCVYGKQCRVSFGDGIH 229
            LL G  ++KL FCEHC++GK  RV F    H
Sbjct: 456  LLDGQSISKLKFCEHCIFGKHKRVKFNTSTH 486


>gb|AFB73911.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score =  229 bits (583), Expect = 6e-57
 Identities = 156/491 (31%), Positives = 243/491 (49%), Gaps = 10/491 (2%)
 Frame = -3

Query: 1659 FDILRCNGRNNFKAWQMDCKXXXXXXXXXXXXXDKNKPSEKVTED*AEK*NKMDQKACST 1480
            ++I + NG NNF  W+M  K                +P E +T+D   K N++D  A S 
Sbjct: 5    YEIEKFNG-NNFSLWKMKMKAVLRKNNCLAAIG--ERPME-ITDD---KWNEVDGNAISD 57

Query: 1479 IHLCLSWNVAYNFADEMTAKGI*DKLQALYLQNDQMSVTYLQKKLFTFRLQPGRLMTDHI 1300
            +HL L+  V  + A++ TAK I D L  LY      +  +L++KL+T R+    ++TDHI
Sbjct: 58   LHLALADGVLSSVAEKNTAKEIWDTLTKLYEAKSLHNKIFLKRKLYTLRMAESTMVTDHI 117

Query: 1299 NEFECLYSDCISLGAKFEDSQKALFLLIFLLPKWEPFVDQMTTLKK-EKFVYSDIVQAVL 1123
            N  + L+S   +LG   E++++A  LL  L   ++  +  +T     E  V+ D+  +VL
Sbjct: 118  NTLKTLFSQLTTLGHNIEENERAELLLQSLPDSYDQLIINLTNNNPVESLVFDDVAASVL 177

Query: 1122 AKASR-KGTLNEEV---QADDLSVTWGXXXXXXXXXXXXXXXXRGRDMFKVECYKCKRKG 955
             + SR K   N +    QA+ LSVT G                + R    V+CY C +KG
Sbjct: 178  NEESRRKNKENRQASSQQAEALSVTRGRSTERGPSGSQNQGRSKFRGKKNVKCYNCGKKG 237

Query: 954  HYKKDCPELKDNHNKQXXXXXXXXXXXXXXXXXEDILIGGDLAQALTAGS-HDHLYDGWM 778
            H KK+C   +     +                  +IL     ++A T       L D W+
Sbjct: 238  HVKKECWSNQKRREGKEPETSNAQGCVASTSDDGEILY----SEATTVSEGRKRLSDVWL 293

Query: 777  LDTGALYHLCPVREWFTTYREVKGSSVMMGDSRPCKTMGVGTVKFQLTDGSCRQLIEVCH 598
            +D+GA +H+   REWF TY  + G SV MG+    +  G+GT+K ++ DG+ R + EV H
Sbjct: 294  IDSGATWHMTSRREWFHTYEPISGGSVYMGNDHALEIAGIGTIKIKMFDGTIRTIGEVRH 353

Query: 597  IPALSKGLISLGMLEAQGYRYVGENGYCNVYFGDRLLLSAVR-HANLYQ---GSVVEGGA 430
            +  L K L+SLG +++ GY+   ENG   +  G  +L+   +  ANL+     ++ E  A
Sbjct: 354  VNGLKKNLLSLGQMDSHGYKTHVENGIMKIVKGALVLMKVEKIGANLFMLKGETLQEADA 413

Query: 429  MVSTVVDEKSLARAQLWHMRLGHVGVSELRTLSKRGLLGGDKMAKLDFCEHCVYGKQCRV 250
             V++  +E ++    +WH++LGH+    L+ LS+R LL G K   L FCEHCV  KQ R+
Sbjct: 414  CVASNGEESTM----MWHLKLGHMSEQGLKILSERKLLPGLKSVSLPFCEHCVTSKQHRL 469

Query: 249  SFGDGIHYGGC 217
             F   I    C
Sbjct: 470  KFSRSIARSKC 480


>gb|AFB73912.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score =  226 bits (575), Expect = 5e-56
 Identities = 152/490 (31%), Positives = 240/490 (48%), Gaps = 9/490 (1%)
 Frame = -3

Query: 1659 FDILRCNGRNNFKAWQMDCKXXXXXXXXXXXXXDKNKPSEKVTED*AEK*NKMDQKACST 1480
            ++I + NG NNF  W+M  K                +P E +T+D   K N++D  A S 
Sbjct: 5    YEIEKFNG-NNFSLWKMKMKAVLRKNNCLAAIG--ERPME-ITDD---KWNEVDSNAISD 57

Query: 1479 IHLCLSWNVAYNFADEMTAKGI*DKLQALYLQNDQMSVTYLQKKLFTFRLQPGRLMTDHI 1300
            +HL L+  V  + A++ TAK I D L  LY      +  +L++KL+T R+    ++TDHI
Sbjct: 58   LHLALADGVLSSVAEKNTAKEIWDTLTKLYEAKSLHNKIFLKRKLYTLRMAESTMVTDHI 117

Query: 1299 NEFECLYSDCISLGAKFEDSQKALFLLIFLLPKWEPFVDQMTTLKK-EKFVYSDIVQAVL 1123
            N  + L+S   +LG   E++++A  LL  L   ++  +  +T     +  V+ D+  +VL
Sbjct: 118  NTLKTLFSQLTTLGHNIEENERAELLLQSLPDSYDQLIINLTNNNPVDSLVFDDVAASVL 177

Query: 1122 AKASR-KGTLNEEV---QADDLSVTWGXXXXXXXXXXXXXXXXRGRDMFKVECYKCKRKG 955
             + SR K   N +    QA+ LSVT G                + R    V+CY C +KG
Sbjct: 178  NEESRRKNKENRQASSQQAEALSVTRGRSTERGPSGSQNHGRSKSRSKKNVKCYNCGKKG 237

Query: 954  HYKKDCPELKDNHNKQXXXXXXXXXXXXXXXXXEDILIGGDLAQALTAGSHDHLYDGWML 775
            H KK+C   +     +                  +IL        + +     L D W++
Sbjct: 238  HVKKECWSNQKRREGKEPESSNAQGCVASTSDDGEILYS---EATIVSEGRKRLSDVWLI 294

Query: 774  DTGALYHLCPVREWFTTYREVKGSSVMMGDSRPCKTMGVGTVKFQLTDGSCRQLIEVCHI 595
            D+GA +H+   REWF TY  + G SV MG+    +  G+GT+K ++ DG+ R + EV H+
Sbjct: 295  DSGATWHMTSRREWFHTYEPISGGSVYMGNDHALEIAGIGTIKIKMFDGTIRTIEEVRHV 354

Query: 594  PALSKGLISLGMLEAQGYRYVGENGYCNVYFGDRLLLSAVR-HANLYQ---GSVVEGGAM 427
              L K L+SLG +++ G +   ENG   +  G  +L+ A +  ANL+     ++ E  A 
Sbjct: 355  NGLKKNLLSLGQMDSHGCKTHVENGIMKIVKGALVLMKAEKICANLFMLKGETLQEADAC 414

Query: 426  VSTVVDEKSLARAQLWHMRLGHVGVSELRTLSKRGLLGGDKMAKLDFCEHCVYGKQCRVS 247
            V++  +E ++    +WH++LGH+    L+ LS+R L  G K   L FCEHCV  KQ R+ 
Sbjct: 415  VASNGEESTM----MWHLKLGHMSEQGLKILSERKLPPGLKSVSLPFCEHCVTSKQHRLK 470

Query: 246  FGDGIHYGGC 217
            F   I    C
Sbjct: 471  FSRSIARSKC 480


>ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
          Length = 1773

 Score =  224 bits (570), Expect = 2e-55
 Identities = 147/429 (34%), Positives = 213/429 (49%), Gaps = 12/429 (2%)
 Frame = -3

Query: 1479 IHLCLSWNVAYNFADEMTAKGI*DKLQALYLQNDQMSVTYLQKKLFTFRLQPGRLMTDHI 1300
            IHL LS N+      E TA  +  KL+ + +  D  S  +L++KLF  +LQ    + DH+
Sbjct: 4    IHLHLSNNILQEVLKEKTATALWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDESVMDHL 63

Query: 1299 NEFECLYSDCISLGAKFEDSQKALFLLIFLLPKWEPFVDQMTTLKKEKFVYSDIVQAVLA 1120
            + F+ + +D  S+  K+++    L LL  L   +  F D +    ++     ++  A+ A
Sbjct: 64   STFKEIVADLESMEIKYDEEDLGLILLCSLPSSYANFRDTIL-YSRDTLTLQEVYDALHA 122

Query: 1119 KASRKGTLNEE---VQADDLSVTWGXXXXXXXXXXXXXXXXRGRDMFKVE-----CYKCK 964
            K   K  +  E    Q + L V                     R   K       C  CK
Sbjct: 123  KEKMKKMVPSEGSNSQPESLVVRGRQQEKNTDNKSRDKSSSGYRGRSKSRGRYKSCKYCK 182

Query: 963  RKGHYKKDCPELKDNH-NKQXXXXXXXXXXXXXXXXXEDILIGGDLAQALTAGSHDHLYD 787
            R GH   DC +L++   +K                   D     +L  A          D
Sbjct: 183  RGGHDISDCWKLQNKEKHKGNYKPKGKQEEQGKAAVATDNKPDAELLVAYAGCVQTS--D 240

Query: 786  GWMLDTGALYHLCPVREWFTTYREVKGSSVMMGDSRPCKTMGVGTVKFQLTDGSCRQLIE 607
             W+LDTG  YH+CP R+WFTTY  V+G +V+MGD+ PCK  GVGT++ ++ DG  R L +
Sbjct: 241  EWLLDTGCTYHMCPNRDWFTTYEPVQGGNVLMGDNTPCKVAGVGTIQIKMFDGCIRTLSD 300

Query: 606  VCHIPALSKGLISLGMLEAQGYRYVGENGYCNVYFGDRLLLSA-VRHANLY--QGSVVEG 436
            V HIP+L + LISL  L+ +GYRY G +G   V  G  +++ A +++A+LY  QG+ + G
Sbjct: 301  VRHIPSLKRNLISLSTLDRKGYRYSGGDGILKVTKGSLVVMKADIKNADLYHLQGTTIVG 360

Query: 435  GAMVSTVVDEKSLARAQLWHMRLGHVGVSELRTLSKRGLLGGDKMAKLDFCEHCVYGKQC 256
               V+ V D  SL+ + LWHMRLGH+    L  LSKRGLL G  + KL FCEHC++GK  
Sbjct: 361  N--VAAVTD--SLSNSDLWHMRLGHMSEIGLAELSKRGLLDGQNIGKLKFCEHCIFGKHK 416

Query: 255  RVSFGDGIH 229
            RV F    H
Sbjct: 417  RVKFTTSTH 425


>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1280

 Score =  219 bits (559), Expect = 4e-54
 Identities = 149/450 (33%), Positives = 219/450 (48%), Gaps = 12/450 (2%)
 Frame = -3

Query: 1542 EKVTED*AEK*NKMDQKACSTIHLCLSWNVAYNFADEMTAKGI*DKLQALYLQNDQMSVT 1363
            +K T+D +    K D+KA S IHL LS N+      E TA G+  KL+ + +  D  S  
Sbjct: 76   DKRTQDWSNDEKKKDRKAMSYIHLHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKM 135

Query: 1362 YLQKKLFTFRLQPGRLMTDHINEFECLYSDCISLGAKFEDSQKALFLLIFLLPKWEPFVD 1183
            +L++KLF  +LQ    + DH++ F+ + +D  S+  K+++    L LL  L   +  F D
Sbjct: 136  HLKQKLFLHKLQDDGSVMDHLSTFKEIVADLESIEVKYDEEDLGLILLCSLPSSYANFRD 195

Query: 1182 QMTTLKKEKFVYSDIVQAVLAKASRKGTLNEE---VQADDLSVTWGXXXXXXXXXXXXXX 1012
             +     +  +  ++  A+ AK   K  +  E    QA+ L V                 
Sbjct: 196  TIL-YSHDTLILKEVYDALHAKEKMKKMVPSEGSNSQAEGLVVRGRQQEKNTKNQSRDKS 254

Query: 1011 XXRGRDMFKVE-----CYKCKRKGHYKKDCPELKDNHNKQXXXXXXXXXXXXXXXXXEDI 847
                R   K       C  CKR GH   +C +L+D  +K+                    
Sbjct: 255  SSSYRGRSKSRGRYKSCKYCKRDGHDISECWKLQDK-DKRTGKYIPKGKKEEEGKAAVVT 313

Query: 846  LIGGDLAQALTAGSHDHLYDGWMLDTGALYHLCPVREWFTTYREVKGSSVMMGDSRPCKT 667
                D    +         D W+LDT   YH+CP R+WF TY  ++G +V+MGD  PC+ 
Sbjct: 314  DEKSDTELLVAYAGCAQTSDQWILDTAWTYHMCPNRDWFATYEALQGGTVLMGDDTPCEV 373

Query: 666  MGVGTVKFQLTDGSCRQLIEVCHIPALSKGLISLGMLEAQGYRYVGENGYCNVYFGDRLL 487
             G+GTV+ ++ DG  R L +V HIP L + LISL  L+ +GY+Y G +G   V  G  ++
Sbjct: 374  AGIGTVQIKMFDGYIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVV 433

Query: 486  LSA-VRHANLY--QGSVVEGGAMVSTVVDEKSLARA-QLWHMRLGHVGVSELRTLSKRGL 319
            + A ++ ANLY  +G+ + G   V+ V D  S + A  LWHMRLGH+    L  LSKR L
Sbjct: 434  MKADIKSANLYHLRGTTILGN--VAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKREL 491

Query: 318  LGGDKMAKLDFCEHCVYGKQCRVSFGDGIH 229
            L G  + KL FCEHC++GK  RV F    H
Sbjct: 492  LDGQSIGKLKFCEHCIFGKHKRVKFNTSTH 521


>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1312

 Score =  219 bits (559), Expect = 4e-54
 Identities = 149/450 (33%), Positives = 219/450 (48%), Gaps = 12/450 (2%)
 Frame = -3

Query: 1542 EKVTED*AEK*NKMDQKACSTIHLCLSWNVAYNFADEMTAKGI*DKLQALYLQNDQMSVT 1363
            +K T+D +    K D+KA S IHL LS N+      E TA G+  KL+ + +  D  S  
Sbjct: 76   DKRTQDWSNDEKKKDRKAMSYIHLHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKM 135

Query: 1362 YLQKKLFTFRLQPGRLMTDHINEFECLYSDCISLGAKFEDSQKALFLLIFLLPKWEPFVD 1183
            +L++KLF  +LQ    + DH++ F+ + +D  S+  K+++    L LL  L   +  F D
Sbjct: 136  HLKQKLFLHKLQDDGSVMDHLSTFKEIVADLESIEVKYDEEDLGLILLCSLPSSYANFRD 195

Query: 1182 QMTTLKKEKFVYSDIVQAVLAKASRKGTLNEE---VQADDLSVTWGXXXXXXXXXXXXXX 1012
             +     +  +  ++  A+ AK   K  +  E    QA+ L V                 
Sbjct: 196  TIL-YSHDTLILKEVYDALHAKEKMKKMVPSEGSNSQAEGLVVRGRQQEKNTKNQSRDKS 254

Query: 1011 XXRGRDMFKVE-----CYKCKRKGHYKKDCPELKDNHNKQXXXXXXXXXXXXXXXXXEDI 847
                R   K       C  CKR GH   +C +L+D  +K+                    
Sbjct: 255  SSSYRGRSKSRGRYKSCKYCKRDGHDISECWKLQDK-DKRTGKYIPKGKKEEEGKAAVVT 313

Query: 846  LIGGDLAQALTAGSHDHLYDGWMLDTGALYHLCPVREWFTTYREVKGSSVMMGDSRPCKT 667
                D    +         D W+LDT   YH+CP R+WF TY  ++G +V+MGD  PC+ 
Sbjct: 314  DEKSDTELLVAYAGCAQTSDQWILDTAWTYHMCPNRDWFATYEALQGGTVLMGDDTPCEV 373

Query: 666  MGVGTVKFQLTDGSCRQLIEVCHIPALSKGLISLGMLEAQGYRYVGENGYCNVYFGDRLL 487
             G+GTV+ ++ DG  R L +V HIP L + LISL  L+ +GY+Y G +G   V  G  ++
Sbjct: 374  AGIGTVQIKMFDGYIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVV 433

Query: 486  LSA-VRHANLY--QGSVVEGGAMVSTVVDEKSLARA-QLWHMRLGHVGVSELRTLSKRGL 319
            + A ++ ANLY  +G+ + G   V+ V D  S + A  LWHMRLGH+    L  LSKR L
Sbjct: 434  MKADIKSANLYHLRGTTILGN--VAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKREL 491

Query: 318  LGGDKMAKLDFCEHCVYGKQCRVSFGDGIH 229
            L G  + KL FCEHC++GK  RV F    H
Sbjct: 492  LDGQSIGKLKFCEHCIFGKHKRVKFNTSTH 521


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score =  214 bits (546), Expect = 1e-52
 Identities = 148/453 (32%), Positives = 219/453 (48%), Gaps = 15/453 (3%)
 Frame = -3

Query: 1542 EKVTED*AEK*NKMDQKACSTIHLCLSWNVAYNFADEMTAKGI*DKLQALYLQNDQMSVT 1363
            +K T D +    K D+KA S IHL LS N+      E  A G+  KL+ + +  D  S  
Sbjct: 248  DKRTHDWSNDEKKRDRKAMSYIHLHLSNNILQEVLKEEIAAGLWLKLEQICMTKDLTSKM 307

Query: 1362 YLQKKLFTFRLQPGRLMTDHINEFECLYSDCISLGAKFEDSQKALFLLIFLLPKWEPFVD 1183
            +L++ LF  +LQ    + DH++ F+ + +D  S+  K+++    L LL  L   +  F D
Sbjct: 308  HLKQTLFLHKLQDDGSVMDHLSAFKEIIADLESMEVKYDEEDLGLILLCSLPSSYANFRD 367

Query: 1182 QMTTLKKEKFVYSDIVQAVLAKASRKGTLNEE---VQADDLSVTWGXXXXXXXXXXXXXX 1012
             +    ++     ++  A+  K   K  +  E    QA+ L + WG              
Sbjct: 368  TIL-YSRDTLTLKEVYDALHVKEKMKKMVPSEGSNSQAEGL-IVWGRQQEKNTKNQSRDK 425

Query: 1011 XXRG-------RDMFKVECYKCKRKGHYKKDCPELKDNHNKQXXXXXXXXXXXXXXXXXE 853
                       R  +K  C  CKR GH   +C +L D   +                   
Sbjct: 426  SSSSYRGRSKSRGRYK-SCKYCKRDGHDIFECWKLHDKDKRTGKYVPKGKKEEEGKAAVV 484

Query: 852  -DILIGGDLAQALTAGSHDHLYDGWMLDTGALYHLCPVREWFTTYREVKGSSVMMGDSRP 676
             D     +L  A    +     D W+L+T  +YH+CP R+WF TY  V+  +V+MGD  P
Sbjct: 485  TDEKSDAELLVAYAGCAQTS--DQWILNTACIYHMCPNRDWFATYEAVQVGTVLMGDDTP 542

Query: 675  CKTMGVGTVKFQLTDGSCRQLIEVCHIPALSKGLISLGMLEAQGYRYVGENGYCNVYFGD 496
            C+  G+GTV+ ++ DG  R L +V HIP L + LISL  L+ +GY+Y G +G   V  G 
Sbjct: 543  CEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGS 602

Query: 495  RLLLSA-VRHANLY--QGSVVEGGAMVSTVVDEKSLARA-QLWHMRLGHVGVSELRTLSK 328
             +++ A ++ ANLY  +G+ + G   V+ V D  S + A  LWHMRLGH+    L  LSK
Sbjct: 603  LVVMKADIKSANLYHLRGTTILGN--VAAVSDSLSNSDATNLWHMRLGHMTEIGLAELSK 660

Query: 327  RGLLGGDKMAKLDFCEHCVYGKQCRVSFGDGIH 229
            RGLL G  + KL FCEHC++GK  RV F    H
Sbjct: 661  RGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTH 693


>ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group]
            gi|255679807|dbj|BAF27642.2| Os11g0157000 [Oryza sativa
            Japonica Group]
          Length = 1601

 Score =  214 bits (546), Expect = 1e-52
 Identities = 148/453 (32%), Positives = 219/453 (48%), Gaps = 15/453 (3%)
 Frame = -3

Query: 1542 EKVTED*AEK*NKMDQKACSTIHLCLSWNVAYNFADEMTAKGI*DKLQALYLQNDQMSVT 1363
            +K T D +    K D+KA S IHL LS N+      E  A G+  KL+ + +  D  S  
Sbjct: 41   DKRTHDWSNDEKKRDRKAMSYIHLHLSNNILQEVLKEEIAAGLWLKLEQICMTKDLTSKM 100

Query: 1362 YLQKKLFTFRLQPGRLMTDHINEFECLYSDCISLGAKFEDSQKALFLLIFLLPKWEPFVD 1183
            +L++ LF  +LQ    + DH++ F+ + +D  S+  K+++    L LL  L   +  F D
Sbjct: 101  HLKQTLFLHKLQDDGSVMDHLSAFKEIIADLESMEVKYDEEDLGLILLCSLPSSYANFRD 160

Query: 1182 QMTTLKKEKFVYSDIVQAVLAKASRKGTLNEE---VQADDLSVTWGXXXXXXXXXXXXXX 1012
             +    ++     ++  A+  K   K  +  E    QA+ L + WG              
Sbjct: 161  TIL-YSRDTLTLKEVYDALHVKEKMKKMVPSEGSNSQAEGL-IVWGRQQEKNTKNQSRDK 218

Query: 1011 XXRG-------RDMFKVECYKCKRKGHYKKDCPELKDNHNKQXXXXXXXXXXXXXXXXXE 853
                       R  +K  C  CKR GH   +C +L D   +                   
Sbjct: 219  SSSSYRGRSKSRGRYK-SCKYCKRDGHDIFECWKLHDKDKRTGKYVPKGKKEEEGKAAVV 277

Query: 852  -DILIGGDLAQALTAGSHDHLYDGWMLDTGALYHLCPVREWFTTYREVKGSSVMMGDSRP 676
             D     +L  A    +     D W+L+T  +YH+CP R+WF TY  V+  +V+MGD  P
Sbjct: 278  TDEKSDAELLVAYAGCAQTS--DQWILNTACIYHMCPNRDWFATYEAVQVGTVLMGDDTP 335

Query: 675  CKTMGVGTVKFQLTDGSCRQLIEVCHIPALSKGLISLGMLEAQGYRYVGENGYCNVYFGD 496
            C+  G+GTV+ ++ DG  R L +V HIP L + LISL  L+ +GY+Y G +G   V  G 
Sbjct: 336  CEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGS 395

Query: 495  RLLLSA-VRHANLY--QGSVVEGGAMVSTVVDEKSLARA-QLWHMRLGHVGVSELRTLSK 328
             +++ A ++ ANLY  +G+ + G   V+ V D  S + A  LWHMRLGH+    L  LSK
Sbjct: 396  LVVMKADIKSANLYHLRGTTILGN--VAAVSDSLSNSDATNLWHMRLGHMTEIGLAELSK 453

Query: 327  RGLLGGDKMAKLDFCEHCVYGKQCRVSFGDGIH 229
            RGLL G  + KL FCEHC++GK  RV F    H
Sbjct: 454  RGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTH 486


>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
          Length = 1205

 Score =  208 bits (529), Expect = 1e-50
 Identities = 149/451 (33%), Positives = 213/451 (47%), Gaps = 13/451 (2%)
 Frame = -3

Query: 1542 EKVTED*AEK*NKMDQKACSTIHLCLSWNVAYNFADEMTAKGI*DKLQALYLQNDQMSVT 1363
            +K T+D +    KMD+KA S IHL LS N+      E TA G+  KL+ + +  D  +  
Sbjct: 41   DKRTQDWSNDEKKMDRKAMSYIHLHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTN-- 98

Query: 1362 YLQKKLFTFRLQPGRLMTDHINEFECLYSDCISLGAKFEDSQKALFLLIFLLPKWEPFVD 1183
                         G +M DH++ F+ + +D  S+  K+++    L LL  L   +  F D
Sbjct: 99   ------------DGSVM-DHLSVFKEIVADLESMEVKYDEEDLGLILLCSLPSSYANFRD 145

Query: 1182 QMTTLKKEKFVYSDIVQAVLAKASRKGTLNEE---VQADDLSVTWGXXXXXXXXXXXXXX 1012
             +    ++     ++  A+ AK   K  +  E    QA+ L V                 
Sbjct: 146  TIL-YSRDTLTLKEVYDALHAKEKMKKMVPSEGSNSQAEGLVVQGSQQEKNTNNKSRDKS 204

Query: 1011 XXRGRDMFKVE-----CYKCKRKGHYKKDCPELKDNHNKQXXXXXXXXXXXXXXXXXE-D 850
                R   K       C  CKR GH    C +L+D   +                    D
Sbjct: 205  SSSYRGRSKSRGRYKSCKYCKRDGHDISKCWKLQDKDKRTGKYIPKGKKEDEGKAAVVTD 264

Query: 849  ILIGGDLAQALTAGSHDHLYDGWMLDTGALYHLCPVREWFTTYREVKGSSVMMGDSRPCK 670
                 +L  A    +     D W+LDT   YH+CP R+WF TY  V+G +V+MGD  PC+
Sbjct: 265  EKSDAELLVAYAGCAQTS--DQWILDTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCE 322

Query: 669  TMGVGTVKFQLTDGSCRQLIEVCHIPALSKGLISLGMLEAQGYRYVGENGYCNVYFGDRL 490
              G+GTV+ ++ DG  R L +V HIP L + LISL  L+ +GY+Y G +G   V  G  +
Sbjct: 323  VAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDCKGYKYSGGDGILKVTKGSLV 382

Query: 489  LLSA-VRHANLY--QGSVVEGGAMVSTVVDEKSLARA-QLWHMRLGHVGVSELRTLSKRG 322
            ++ A ++ ANLY  QG+ + G   V+TV D  S + A  LWHMRLGH+    L  LS RG
Sbjct: 383  VMKADIKSANLYHLQGTTILGN--VATVSDSLSNSDATNLWHMRLGHMSEIGLAELSMRG 440

Query: 321  LLGGDKMAKLDFCEHCVYGKQCRVSFGDGIH 229
            LL G  + KL FCEHC++GK  RV F    H
Sbjct: 441  LLDGQSIGKLKFCEHCIFGKHKRVKFNTSTH 471


>gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1211

 Score =  205 bits (521), Expect = 1e-49
 Identities = 146/451 (32%), Positives = 214/451 (47%), Gaps = 13/451 (2%)
 Frame = -3

Query: 1542 EKVTED*AEK*NKMDQKACSTIHLCLSWNVAYNFADEMTAKGI*DKLQALYLQNDQMSVT 1363
            +K T+D +    K D+K  S IHL LS N+      E TA G+  KL+ + +  D  S  
Sbjct: 41   DKRTQDWSNDEKKRDRKTMSYIHLHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKM 100

Query: 1362 YLQKKLFTFRLQPGRLMTDHINEFECLYSDCISLGAKFEDSQKALFLLIFLLPKWEPFVD 1183
            +L++KLF  +LQ    + DH++ F+ + +D  S+  K+++    L LL  L   +  F D
Sbjct: 101  HLKQKLFLHKLQDDGSVMDHLSAFKKIVADLESMEVKYDEEDLCLILLCSLPSSYANFRD 160

Query: 1182 QMTTLKKEKFVYSDIVQAVLAKASRKGTLNEE---VQADDLSVTWGXXXXXXXXXXXXXX 1012
             +     +     ++  A+ AK   K  +  E    QA+ L V                 
Sbjct: 161  TIL-YSCDTLTLKEVYDALHAKEKIKKMVPSEGSNSQAEGLVVRGRQQEKNTNSKSRDKS 219

Query: 1011 XXRGRDMFKVE-----CYKCKRKGHYKKDCPELKDNHNKQXXXXXXXXXXXXXXXXXE-D 850
                R   K       C   KR GH   +C +L+D   +                    D
Sbjct: 220  SSSYRGRSKSRGRYKSCKYYKRDGHDISECWKLQDKDKRTGKYVPKGKKEEEGKAAVVTD 279

Query: 849  ILIGGDLAQALTAGSHDHLYDGWMLDTGALYHLCPVREWFTTYREVKGSSVMMGDSRPCK 670
                 +L  A    +     D W+LDT   YH+C  R+WF TY  V+G +V+MGD  PC+
Sbjct: 280  EKSDAELLVAYAGCAQTS--DQWILDTACTYHMCLNRDWFATYEAVQGGTVLMGDDTPCE 337

Query: 669  TMGVGTVKFQLTDGSCRQLIEVCHIPALSKGLISLGMLEAQGYRYVGENGYCNVYFGDRL 490
              GV TV+ ++ DG  R L +V HIP L + LISL  L+ + Y+Y G +G   V  G  +
Sbjct: 338  VAGVETVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKVYKYSGGDGILKVTKGSLV 397

Query: 489  LLSA-VRHANLY--QGSVVEGGAMVSTVVDEKSLARA-QLWHMRLGHVGVSELRTLSKRG 322
            ++ A ++ ANLY  +G+ + G   ++ V D    + A  LWHMRLGH+    L  LSKRG
Sbjct: 398  VMKADIKSANLYHVRGTTILGN--IAAVSDSLYNSDATNLWHMRLGHMSEIGLAELSKRG 455

Query: 321  LLGGDKMAKLDFCEHCVYGKQCRVSFGDGIH 229
            LL G  + KL FCEHC++GK  RV F    H
Sbjct: 456  LLDGQSIGKLKFCEHCIFGKHKRVKFNTSTH 486


>gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
          Length = 867

 Score =  204 bits (518), Expect = 2e-49
 Identities = 129/352 (36%), Positives = 177/352 (50%), Gaps = 10/352 (2%)
 Frame = -3

Query: 1254 KFEDSQKALFLLIFLLPKWEPFVDQMTTLKKEKFVYSDIVQAVLA--------KASRKGT 1099
            KFED   AL LL  L  ++E    + T L  ++ V  D+V + L         K   K T
Sbjct: 79   KFEDEDLALMLLSSLPDEFEHL--ETTLLHGKENVSLDVVCSALYSHELRKQDKMKTKST 136

Query: 1098 LNEEVQADDLSVTWGXXXXXXXXXXXXXXXXRGRDMFKVECYKCKRKGHYKKDCPELKDN 919
             +EE      ++                   +GR + K EC  C  KGH+KKDCP+L+  
Sbjct: 137  TSEE------ALVARGRQQSQTKERRGMSKSKGRAVAKDECAFCHEKGHWKKDCPKLQ-- 188

Query: 918  HNKQXXXXXXXXXXXXXXXXXEDILIGGDLAQALTAGSHDHLYDGWMLDTGALYHLCPVR 739
              K+                  DI +   L+ +L         D W+LD+G  YH+CP+R
Sbjct: 189  --KKEKVLQDANVAECKSDVESDISLIVSLSASL-------YLDEWILDSGCTYHMCPIR 239

Query: 738  EWFTTYREVKGSSVMMGDSRPCKTMGVGTVKFQLTDGSCRQLIEVCHIPALSKGLISLGM 559
            +WF  ++E+ G  V MG+  PCKT+G+G++K +  DGS R L +V ++P L K LISLG 
Sbjct: 240  DWFFEFQELDGGVVYMGNDNPCKTVGIGSIKLRNHDGSTRILRDVRYVPKLKKNLISLGA 299

Query: 558  LEAQGYRYVGENGYCNVYFGDRLLLSAVRHANL--YQGSVVEGGAMVSTVVDEKSLARAQ 385
            LE++G      +G      G  ++L  V   NL  YQGS V G    +T   +K     +
Sbjct: 300  LESKGLVVTMRDGILKATSGALVMLKGVMKNNLYYYQGSTVVGTVAAATSSSKKDAEATK 359

Query: 384  LWHMRLGHVGVSELRTLSKRGLLGGDKMAKLDFCEHCVYGKQCRVSFGDGIH 229
            LWHMRLGH G   L+  +K+GLL G K  KL+FCEHCV GKQ RV FG  IH
Sbjct: 360  LWHMRLGHAGEKSLQIFTKQGLLKGTKACKLEFCEHCVLGKQRRVKFGTAIH 411


>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
          Length = 1305

 Score =  203 bits (516), Expect = 4e-49
 Identities = 140/481 (29%), Positives = 234/481 (48%), Gaps = 9/481 (1%)
 Frame = -3

Query: 1659 FDILRCNGRNNFKAWQMDCKXXXXXXXXXXXXXDKNKPSEKVTED*AEK*NKMDQKACST 1480
            F+I + NG +NF  W++  K                +P++ +T+D   K  +MD  A + 
Sbjct: 5    FEIPKFNG-SNFSLWKLKIKAILRKDNCLPAID--GRPAD-ITDD---KRKEMDDNAVAN 57

Query: 1479 IHLCLSWNVAYNFADEMTAKGI*DKLQALYLQNDQMSVTYLQKKLFTFRLQPGRLMTDHI 1300
            +HL ++ +V  + A++ TAK I D L  LY      +  +L+++L+TFR+     M DHI
Sbjct: 58   LHLAVADSVLSSIAEKKTAKKIWDTLIQLYEVKSLHNRIFLKRRLYTFRMSESTSMPDHI 117

Query: 1299 NEFECLYSDCISLGAKFEDSQKALFLLIFLLPKWEPFVDQMTTLK-KEKFVYSDIVQAVL 1123
            N    +++   +      ++++A  LL  L   ++  V  +T     ++  ++D+  A+L
Sbjct: 118  NNLNTMFAQLSASDFTIGENERAEVLLQSLPDSYDQLVINITNNNIVDRLSFNDVAGAIL 177

Query: 1122 AKASRKGTLNEEV----QADDLSVTWGXXXXXXXXXXXXXXXXRGRDMFKVECYKCKRKG 955
             + SR+    +      Q + L+VT G                  R    ++CY C ++G
Sbjct: 178  EEESRRKNKEDRQDSSKQMEALTVTRGRSTERGPSGSQNHGRSTSRRKTNLKCYNCGKRG 237

Query: 954  HYKKDCPELKDNHNKQXXXXXXXXXXXXXXXXXEDILIGGDLAQALTAGSHDHLYDGWML 775
            H KKDC   K +  K                   ++L       A++    + L D W++
Sbjct: 238  HLKKDCWSNKKSGEKSSEASTSQGCVASTSDDG-EVLYS---EAAVSTKGKNRLTDVWIV 293

Query: 774  DTGALYHLCPVREWFTTYREVKGSSVMMGDSRPCKTMGVGTVKFQLTDGSCRQLIEVCHI 595
            D+GA +H+ P R+WF TY  V   +V MG+    + +G+GTVK ++ DG+ R L EV H+
Sbjct: 294  DSGATWHMTPRRDWFCTYEPVSEGNVFMGNDHALEIVGIGTVKIKMYDGTIRTLQEVRHV 353

Query: 594  PALSKGLISLGMLEAQGYRYVGENGYCNVYFGDRLLLSAVR-HANLYQ--GSVVE-GGAM 427
              L+K L+S+G L+  GY+Y  + G   V  G  +++ A +  ANLY   G   +   A 
Sbjct: 354  KELAKNLLSVGQLDDLGYKYDIQGGILKVVKGSLVVMKAKKVAANLYMLLGDTWQMADAS 413

Query: 426  VSTVVDEKSLARAQLWHMRLGHVGVSELRTLSKRGLLGGDKMAKLDFCEHCVYGKQCRVS 247
            V+    E++     +WH RLGH+    L+ L++R L+ G K   L FCEHCV  KQ R+ 
Sbjct: 414  VAVGSQEET---TMMWHRRLGHMSERGLKVLAERNLIPGLKSVSLPFCEHCVISKQHRLK 470

Query: 246  F 244
            F
Sbjct: 471  F 471


>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  203 bits (516), Expect = 4e-49
 Identities = 140/481 (29%), Positives = 233/481 (48%), Gaps = 9/481 (1%)
 Frame = -3

Query: 1659 FDILRCNGRNNFKAWQMDCKXXXXXXXXXXXXXDKNKPSEKVTED*AEK*NKMDQKACST 1480
            F+I + NGRN F  W++  K                +P++ +T+   EK  +MD  A + 
Sbjct: 5    FEIEKFNGRN-FSLWKL--KIRAILRKDNCLDAIDGRPAD-ITD---EKWKEMDDNAVAN 57

Query: 1479 IHLCLSWNVAYNFADEMTAKGI*DKLQALYLQNDQMSVTYLQKKLFTFRLQPGRLMTDHI 1300
            +HL ++ +V  + A++ TAK I D L  LY      +  +L+++L+T R+     +TDHI
Sbjct: 58   LHLAMADSVLSSIAEKKTAKEIWDTLIKLYEVKSLHNRIFLKRRLYTLRMGESTSVTDHI 117

Query: 1299 NEFECLYSDCISLGAKFEDSQKALFLLIFLLPKWEPFVDQMTTLK-KEKFVYSDIVQAVL 1123
            N    L+S   +   K  ++++A  LL  L   ++  +  +T     +   + D+  A+L
Sbjct: 118  NTLNTLFSQLTASDFKIAENERAELLLQSLPDSYDQLIINITNNNITDTLHFDDVAGAIL 177

Query: 1122 AKASRKGTLNEEV----QADDLSVTWGXXXXXXXXXXXXXXXXRGRDMFKVECYKCKRKG 955
             + SR+    E      QA+ L++T G                + R    ++CY C  KG
Sbjct: 178  EEESRRKNKEERSESSKQAEALTMTRGRSTERGPSGSQNHGRSKSRRKKNIKCYGCGMKG 237

Query: 954  HYKKDCPELKDNHNKQXXXXXXXXXXXXXXXXXEDILIGGDLAQALTAGSHDHLYDGWML 775
            H KK+C  +K N  K                   +IL       A ++     L D W++
Sbjct: 238  HVKKECWNIKKNGEKNSEASTSQGCVASTSDDG-EILYS---EAATSSKGERRLNDVWIM 293

Query: 774  DTGALYHLCPVREWFTTYREVKGSSVMMGDSRPCKTMGVGTVKFQLTDGSCRQLIEVCHI 595
            D+GA +H+ P R+WF +Y  +   SV MG+    +  GVGT++ ++ DG+ R++  V H+
Sbjct: 294  DSGATWHMTPHRDWFFSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQGVRHV 353

Query: 594  PALSKGLISLGMLEAQGYRYVGENGYCNVYFGDRLLLSAVR-HANLYQ---GSVVEGGAM 427
              L K L+S+G L+  G +   E+G   V  G+ +++ A +  +NLY     ++ E  A 
Sbjct: 354  KGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQEADAS 413

Query: 426  VSTVVDEKSLARAQLWHMRLGHVGVSELRTLSKRGLLGGDKMAKLDFCEHCVYGKQCRVS 247
            V+    E++     +WH RLGH+    L+ L++R LL G K   L FCEHCV  KQ R+ 
Sbjct: 414  VAASSQEET---TMMWHQRLGHMSERGLKVLAERNLLHGLKAVNLPFCEHCVISKQHRLK 470

Query: 246  F 244
            F
Sbjct: 471  F 471


>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  202 bits (515), Expect = 5e-49
 Identities = 140/481 (29%), Positives = 232/481 (48%), Gaps = 9/481 (1%)
 Frame = -3

Query: 1659 FDILRCNGRNNFKAWQMDCKXXXXXXXXXXXXXDKNKPSEKVTED*AEK*NKMDQKACST 1480
            F+I + NGRN F  W++  K                +P++ +T+   EK  +MD  A + 
Sbjct: 5    FEIEKFNGRN-FSLWKL--KIRAILRKDNCLDAIDGRPAD-ITD---EKWKEMDDNAVAN 57

Query: 1479 IHLCLSWNVAYNFADEMTAKGI*DKLQALYLQNDQMSVTYLQKKLFTFRLQPGRLMTDHI 1300
            +HL ++ +V  + A++ TAK I D L  LY      +  +L+++L+T R+     +TDHI
Sbjct: 58   LHLAMADSVLSSIAEKKTAKEIWDTLIKLYEVKSLHNRIFLKRRLYTLRMGESTSVTDHI 117

Query: 1299 NEFECLYSDCISLGAKFEDSQKALFLLIFLLPKWEPFVDQMTTLK-KEKFVYSDIVQAVL 1123
            N    L+S   +   K  ++++A  LL  L   ++  +  +T     +   + D+  A+L
Sbjct: 118  NTLNTLFSQLTASDFKIAENERAELLLQSLPDSYDQLIINITNNNIADTLHFDDVAGAIL 177

Query: 1122 AKASRKGTLNEEV----QADDLSVTWGXXXXXXXXXXXXXXXXRGRDMFKVECYKCKRKG 955
             + SR+    E      QA+ L++T G                + R    ++CY C  KG
Sbjct: 178  EEESRRKNKEERSESSKQAEALTMTRGRSTERGPSGSQNHGRSKSRRKKNIKCYGCGMKG 237

Query: 954  HYKKDCPELKDNHNKQXXXXXXXXXXXXXXXXXEDILIGGDLAQALTAGSHDHLYDGWML 775
            H KK+C  +K N  K                   +IL       A ++     L D W++
Sbjct: 238  HVKKECWNIKKNGEKNSEASTSQGCVASTSDDG-EILYS---EAATSSKGERRLNDVWIM 293

Query: 774  DTGALYHLCPVREWFTTYREVKGSSVMMGDSRPCKTMGVGTVKFQLTDGSCRQLIEVCHI 595
            D+GA +H+ P R+WF +Y  +   SV MG+    +  GVGT++ ++ DG+ R++  V H+
Sbjct: 294  DSGATWHMTPHRDWFFSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQGVRHV 353

Query: 594  PALSKGLISLGMLEAQGYRYVGENGYCNVYFGDRLLLSAVR-HANLYQ---GSVVEGGAM 427
              L K L+S+G L+  G +   E+G   V  G+ +++ A +  +NLY     ++ E  A 
Sbjct: 354  KGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQEADAS 413

Query: 426  VSTVVDEKSLARAQLWHMRLGHVGVSELRTLSKRGLLGGDKMAKLDFCEHCVYGKQCRVS 247
            V+    E++     +WH RLGH+    L+ L +R LL G K   L FCEHCV  KQ R+ 
Sbjct: 414  VAAASQEET---TMMWHQRLGHMSERGLKVLVERNLLHGLKTVNLPFCEHCVISKQHRLK 470

Query: 246  F 244
            F
Sbjct: 471  F 471


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  201 bits (512), Expect = 1e-48
 Identities = 132/400 (33%), Positives = 196/400 (49%), Gaps = 13/400 (3%)
 Frame = -3

Query: 1389 LQNDQMSVTYLQKKLFTFRLQPGRLMTDHINEFECLYSDCISLGAKFEDSQKALFLLIFL 1210
            +  D  S  +L++KLF  +LQ    + DH++ F+ + +D  S+  K+++    L LL  L
Sbjct: 1    MTKDLTSKMHLKQKLFLHKLQDDGSVMDHLSAFKEIVADLESMEVKYDEEDLGLILLCSL 60

Query: 1209 LPKWEPFVDQMTTLKKEKFVYSDIVQAVLAKASRKGTLNEE---VQADDLSVTWGXXXXX 1039
               +  F D +    ++     ++  A+ AK   K  +  E    QA+ L V        
Sbjct: 61   PSSYANFRDTIL-YSRDTLTLKEVYDALHAKEKMKKMVPSEGSNSQAEGLVVRGRQQEKN 119

Query: 1038 XXXXXXXXXXXRGRDMFKVE-----CYKCKRKGHYKKDCPELKDNHNK-QXXXXXXXXXX 877
                         R   K       C  CKR GH   +C +L+D   + +          
Sbjct: 120  TNNKSRDKSSSIYRGRSKSRGRYKSCKYCKRDGHDISECWKLQDKDKRTRKYIPKGKKEE 179

Query: 876  XXXXXXXEDILIGGDLAQALTAGSHDHLYDGWMLDTGALYHLCPVREWFTTYREVKGSSV 697
                    D     +L  A    +     D W+LDT   YH+CP R+WF TY  V+G +V
Sbjct: 180  EGKAAVVTDEKSDAELLVAYAGCAQTS--DQWILDTACTYHMCPNRDWFATYEAVQGGTV 237

Query: 696  MMGDSRPCKTMGVGTVKFQLTDGSCRQLIEVCHIPALSKGLISLGMLEAQGYRYVGENGY 517
            +MGD  PC+  G+GTV+ ++ DG  R L++V HIP L + LISL  L+ +GY+Y G +G 
Sbjct: 238  LMGDDTPCEVAGIGTVQIKMFDGCIRTLLDVRHIPNLKRSLISLCTLDRKGYKYSGGDGI 297

Query: 516  CNVYFGDRLLLSA-VRHANLY--QGSVVEGGAMVSTVVDEKSLARA-QLWHMRLGHVGVS 349
              V  G  +++ A +++ANLY  +G+ + G   V+ V D  S + A  LWHMRLGH+   
Sbjct: 298  LKVTKGSLVVMKADIKYANLYHLRGTTILGN--VAAVSDSLSNSDATNLWHMRLGHMSEI 355

Query: 348  ELRTLSKRGLLGGDKMAKLDFCEHCVYGKQCRVSFGDGIH 229
             L  LSKRGLL G  + KL FCEHC++GK  RV F    H
Sbjct: 356  GLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTH 395


>gb|AAL31093.1|AC091749_22 putative retrotransposon-related protein [Oryza sativa Japonica
            Group] gi|22655747|gb|AAN04164.1| Putative
            retrotransposon protein [Oryza sativa Japonica Group]
            gi|31431214|gb|AAP53029.1| retrotransposon protein,
            putative, Ty1-copia subclass, expressed [Oryza sativa
            Japonica Group]
          Length = 1229

 Score =  201 bits (511), Expect = 1e-48
 Identities = 140/452 (30%), Positives = 224/452 (49%), Gaps = 14/452 (3%)
 Frame = -3

Query: 1542 EKVTED*AEK*NKMDQKACSTIHLCLSWNVAYNFADEMTAKGI*DKLQALYLQNDQMSVT 1363
            +K TE  AE+  K D+KA S I L LS ++      E TA  +  KL+++ +  D  S  
Sbjct: 41   KKTTEWTAEEKRK-DRKALSLIQLHLSNDILQKVLQEKTAAELWFKLESICMSKDLTSKM 99

Query: 1362 YLQKKLFTFRLQPGRLMTDHINEFECLYSDCISLGAKFEDSQKALFLLIFLLPKWEPFVD 1183
            +++ KLF+ +LQ    + +HI+ F+ + +D +S+  +F+D    L LL  L   +  F D
Sbjct: 100  HIKMKLFSHKLQESGSVLNHISVFKEIIADLVSMEVQFDDEDLGLLLLCSLPSLYANFRD 159

Query: 1182 QMTTLKKEKFVYSDIVQAVLAKASRKGTLNEEVQADDLSVTWGXXXXXXXXXXXXXXXXR 1003
             +  L +++   +++ +A+  +   KG     VQ+D  S                     
Sbjct: 160  TIL-LSRDELTLAEVYEALQNREKMKGM----VQSDASSSKGKALQVRGRSEQRTYNDSN 214

Query: 1002 GRDMF----------KVECYKCKRKGHYKKDCPELKDNHNKQXXXXXXXXXXXXXXXXXE 853
             RD            K  C  CK+K H+ ++C +L+ N  K+                  
Sbjct: 215  DRDKSQSRGRSKSRGKKFCKYCKKKNHFIEECWKLQ-NKEKRKSDGKASVVTSAENSDSA 273

Query: 852  DILIGGDLAQALTAGSHDHLYDGWMLDTGALYHLCPVREWFTTYREVK-GSSVMMGDSRP 676
            D L+      A    SHD     W+LDT  L+ +C  R+WF++++ V+ G  V MGD+ P
Sbjct: 274  DCLV----FFAGCVASHDE----WILDTACLFLICINRDWFSSHKSVQNGDVVRMGDNNP 325

Query: 675  CKTMGVGTVKFQLTDGSCRQLIEVCHIPALSKGLISLGMLEAQGYRYVGENGYCNVYFGD 496
             + MG+G+V+ +  DG  R L +V HIP +++ LISL  L+A+GY+Y G  G   V  G 
Sbjct: 326  REIMGIGSVQIKTHDGMTRTLKDVRHIPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGS 385

Query: 495  RL-LLSAVRHANLY--QGSVVEGGAMVSTVVDEKSLARAQLWHMRLGHVGVSELRTLSKR 325
             + ++  +  ANLY  +GS + G ++ +  V +   ++  LWHMRLGH+    +  L KR
Sbjct: 386  LVYMIGDMNSANLYVLRGSTLHG-SLTAAAVSKDEPSKTNLWHMRLGHMSELGMAELMKR 444

Query: 324  GLLGGDKMAKLDFCEHCVYGKQCRVSFGDGIH 229
             LL G     + FCEHCV+GK  RV F   +H
Sbjct: 445  NLLDGCTQGNMKFCEHCVFGKHKRVKFNTSVH 476


>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  199 bits (506), Expect = 5e-48
 Identities = 139/481 (28%), Positives = 230/481 (47%), Gaps = 9/481 (1%)
 Frame = -3

Query: 1659 FDILRCNGRNNFKAWQMDCKXXXXXXXXXXXXXDKNKPSEKVTED*AEK*NKMDQKACST 1480
            F+I + NGR  F  W++  K                +P++ +T+   EK  +MD  A + 
Sbjct: 5    FEIEKFNGRK-FSLWKL--KIRAILRKDNCLDAIDGRPAD-ITD---EKWKEMDDNAVAN 57

Query: 1479 IHLCLSWNVAYNFADEMTAKGI*DKLQALYLQNDQMSVTYLQKKLFTFRLQPGRLMTDHI 1300
            +HL ++ +V  + A++ TAK I D L  LY      +  +L+++L+T R+     +TDHI
Sbjct: 58   LHLAMADSVLSSIAEKKTAKEIWDTLIKLYEVKSLHNRIFLKRRLYTLRMGESTSVTDHI 117

Query: 1299 NEFECLYSDCISLGAKFEDSQKALFLLIFLLPKWEPFVDQMTTLK-KEKFVYSDIVQAVL 1123
            N    L+S   +   K  ++++A  LL  L   ++  +  +T     +   + D+  A+L
Sbjct: 118  NTLNTLFSQLTASDFKIAENERAELLLQSLPDSYDQLIINITNNNIADTLHFDDVAGAIL 177

Query: 1122 AKASRKGTLNEEV----QADDLSVTWGXXXXXXXXXXXXXXXXRGRDMFKVECYKCKRKG 955
             + SR+    E      QA+ L++T G                + R    ++CY C  KG
Sbjct: 178  EEESRRKNKEERSESSKQAEALTMTRGRSTERGPSGSQNHGRSKSRRKNNIKCYGCGMKG 237

Query: 954  HYKKDCPELKDNHNKQXXXXXXXXXXXXXXXXXEDILIGGDLAQALTAGSHDHLYDGWML 775
            H KK+C   K N  K                   +IL       A ++     L D W++
Sbjct: 238  HVKKECWNNKKNGEKNSEATTSQGCVASTSDDG-EILYS---EAATSSEGERQLNDVWIM 293

Query: 774  DTGALYHLCPVREWFTTYREVKGSSVMMGDSRPCKTMGVGTVKFQLTDGSCRQLIEVCHI 595
            D+GA +H+ P R+WF +Y  +   SV MG+    +  GVGT++ ++ DG+ R++  V H+
Sbjct: 294  DSGATWHMTPHRDWFYSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQGVRHV 353

Query: 594  PALSKGLISLGMLEAQGYRYVGENGYCNVYFGDRLLLSAVR-HANLYQ---GSVVEGGAM 427
              L K L+S+G L+  G +   E+G   V  G+ +++ A +  +NLY     ++ E  A 
Sbjct: 354  KGLKKNLLSVGQLDDLGCKIHSESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQEADAS 413

Query: 426  VSTVVDEKSLARAQLWHMRLGHVGVSELRTLSKRGLLGGDKMAKLDFCEHCVYGKQCRVS 247
            V+    E++     +WH RLGH+    L+ L +R LL G K   L FCEHCV  KQ R+ 
Sbjct: 414  VAAASQEET---TMMWHQRLGHMSERGLKVLVERNLLHGLKTVNLPFCEHCVISKQHRLK 470

Query: 246  F 244
            F
Sbjct: 471  F 471


>gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein [Oryza sativa Japonica Group]
            gi|108708632|gb|ABF96427.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1326

 Score =  199 bits (506), Expect = 5e-48
 Identities = 135/448 (30%), Positives = 220/448 (49%), Gaps = 10/448 (2%)
 Frame = -3

Query: 1542 EKVTED*AEK*NKMDQKACSTIHLCLSWNVAYNFADEMTAKGI*DKLQALYLQNDQMSVT 1363
            +K TE  AE+  K D+KA   I L LS ++      E TA  +  KL+++ +  D  S  
Sbjct: 44   KKSTEWTAEEKRK-DRKALLLIQLHLSNDILQEVLQEKTAAELWLKLESICMSKDLTSKM 102

Query: 1362 YLQKKLFTFRLQPGRLMTDHINEFECLYSDCISLGAKFEDSQKALFLLIFLLPKWEPFVD 1183
            +++ KLF+ +LQ    + +HI+ F+ +  D +S+  +F+D    L LL  L   +  F D
Sbjct: 103  HIKMKLFSHKLQESGSVLNHISVFKEIVVDLVSIEVQFDDEDLGLLLLCSLPSSYANFRD 162

Query: 1182 QMTTLKKEKFVYSDIVQAVLAKASRKGTLNEEVQAD--DLSVTWGXXXXXXXXXXXXXXX 1009
             +  L +++   +++ +A+  +   KG +  +  +   +     G               
Sbjct: 163  TIL-LSRDELTLAEVYEALQNREKMKGMVQSDASSSKGEALQVRGRSEQRTYNDSSDRDK 221

Query: 1008 XRGRDMFKVE----CYKCKRKGHYKKDCPELKDNHNKQXXXXXXXXXXXXXXXXXEDILI 841
             + R   K      C  CK+K H+ ++C +L+ N  K+                  D L+
Sbjct: 222  SQSRGRSKSRGKKFCKYCKKKNHFIEECWKLQ-NKEKRKSDGKASVVTSAENSDSGDCLV 280

Query: 840  GGDLAQALTAGSHDHLYDGWMLDTGALYHLCPVREWFTTYREVK-GSSVMMGDSRPCKTM 664
                  A    SHD     W+LDT   +H+C  R+WF++Y+ V+ G  V MGD  P + +
Sbjct: 281  ----VFAGCVASHDE----WILDTACSFHICINRDWFSSYKSVQNGDVVRMGDDNPREIV 332

Query: 663  GVGTVKFQLTDGSCRQLIEVCHIPALSKGLISLGMLEAQGYRYVGENGYCNVYFGDRL-L 487
            G+G+V+ +  DG  R L +V HIP +++ LISL  L+A+GY+Y    G   V  G  + +
Sbjct: 333  GIGSVQIKTHDGMTRTLKDVRHIPGMARNLISLSTLDAEGYKYSSSGGVVKVSKGSLVYM 392

Query: 486  LSAVRHANLY--QGSVVEGGAMVSTVVDEKSLARAQLWHMRLGHVGVSELRTLSKRGLLG 313
            +  +  ANLY  +GS + G    + V  ++ + +  LWHMRLGH+    +  L KR LL 
Sbjct: 393  IGDMNSANLYVLRGSTLHGSVTAAAVSKDEPI-KTNLWHMRLGHMSELGMAELMKRNLLD 451

Query: 312  GDKMAKLDFCEHCVYGKQCRVSFGDGIH 229
            G    K+ FCEHCV+GK  RV F   +H
Sbjct: 452  GCTQGKMKFCEHCVFGKHKRVKFNTSVH 479


>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  197 bits (501), Expect = 2e-47
 Identities = 137/481 (28%), Positives = 228/481 (47%), Gaps = 9/481 (1%)
 Frame = -3

Query: 1659 FDILRCNGRNNFKAWQMDCKXXXXXXXXXXXXXDKNKPSEKVTED*AEK*NKMDQKACST 1480
            F+I + NGRN F  W++  +              +      +T+   EK  +MD  A + 
Sbjct: 5    FEIEKFNGRN-FSLWKLKIRAILRKDNCLDAIDGR---LADITD---EKWKEMDDNAVAN 57

Query: 1479 IHLCLSWNVAYNFADEMTAKGI*DKLQALYLQNDQMSVTYLQKKLFTFRLQPGRLMTDHI 1300
            +HL ++ +V  + A++ TAK I D L  LY      +  +L+++L+T ++     +TDHI
Sbjct: 58   LHLAMADSVLSSIAEKKTAKEIWDTLIKLYEVKSLHNRIFLKRRLYTLQMGESTSVTDHI 117

Query: 1299 NEFECLYSDCISLGAKFEDSQKALFLLIFLLPKWEPFVDQMTTLK-KEKFVYSDIVQAVL 1123
            N    L+S   +   K   +++A  LL  L   ++  +  +T     +   + D+  A+L
Sbjct: 118  NTLNTLFSQLTASDFKIAKNERAELLLQSLPDSYDQLIINITNNNIADTLHFDDVAGAIL 177

Query: 1122 AKASRKGTLNEEV----QADDLSVTWGXXXXXXXXXXXXXXXXRGRDMFKVECYKCKRKG 955
             + SR+    E      QA+ L++T G                + R    ++CY C  KG
Sbjct: 178  EEESRRKNKEERSESSKQAEALTMTRGRSTERGPSGSQNHGRSKSRRKKNIKCYGCGMKG 237

Query: 954  HYKKDCPELKDNHNKQXXXXXXXXXXXXXXXXXEDILIGGDLAQALTAGSHDHLYDGWML 775
            H KK+C  +K N  K                   +IL       A ++     L D W++
Sbjct: 238  HVKKECWNIKKNGEKNSEASTSQGCVASTSDDG-EILYS---EAATSSKGERRLNDVWIM 293

Query: 774  DTGALYHLCPVREWFTTYREVKGSSVMMGDSRPCKTMGVGTVKFQLTDGSCRQLIEVCHI 595
            D+GA +H+ P R+WF +Y  +   SV MG+    +  GVGT++ ++ DG+ R++  V H+
Sbjct: 294  DSGATWHMTPHRDWFYSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQGVRHV 353

Query: 594  PALSKGLISLGMLEAQGYRYVGENGYCNVYFGDRLLLSAVR-HANLYQ---GSVVEGGAM 427
              L K L+S+G L+  G +   E+G   V  G+ +++ A +  +NLY     ++ E  A 
Sbjct: 354  KGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQEADAS 413

Query: 426  VSTVVDEKSLARAQLWHMRLGHVGVSELRTLSKRGLLGGDKMAKLDFCEHCVYGKQCRVS 247
            V+    E++     +WH RLGH+    L+ L +R LL G K   L FCEHCV  KQ R+ 
Sbjct: 414  VAAASQEET---TMMWHQRLGHMSERGLKVLVERNLLHGLKTVNLPFCEHCVMSKQHRLK 470

Query: 246  F 244
            F
Sbjct: 471  F 471