BLASTX nr result
ID: Akebia22_contig00014326
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Akebia22_contig00014326 (2588 letters) Database: ./nr 38,876,450 sequences; 13,856,398,315 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 245 6e-62 emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group] 230 2e-57 gb|AFB73911.1| polyprotein [Citrus sinensis] 229 6e-57 gb|AFB73912.1| polyprotein [Citrus sinensis] 226 5e-56 ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707... 224 2e-55 gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group] 219 4e-54 gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc... 219 4e-54 gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 214 1e-52 ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group] g... 214 1e-52 emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group] 208 1e-50 gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group] 205 1e-49 gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vu... 204 2e-49 gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus] 203 4e-49 gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula] 203 4e-49 gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula] 202 5e-49 gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] 201 1e-48 gb|AAL31093.1|AC091749_22 putative retrotransposon-related prote... 201 1e-48 gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula] 199 5e-48 gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein ... 199 5e-48 gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula] 197 2e-47 >gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1| copia LTR rider [Solanum lycopersicum] Length = 1307 Score = 245 bits (626), Expect = 6e-62 Identities = 160/473 (33%), Positives = 233/473 (49%), Gaps = 3/473 (0%) Frame = -3 Query: 1638 GRNNFKAWQMDCKXXXXXXXXXXXXXDKNKPSEKVTED*AEK*NKMDQKACSTIHLCLSW 1459 GRN+F WQ+ K + VT + A +++KA STI LCL+ Sbjct: 13 GRNSFSLWQI--KMRALLKQQGFWAPLSKDKNAVVTPEMAI----LEEKAHSTIMLCLAD 66 Query: 1458 NVAYNFADEMTAKGI*DKLQALYLQNDQMSVTYLQKKLFTFRLQPGRLMTDHINEFECLY 1279 +V +DE TA G+ KL++LY+ + L+++LF R+ G + +H+ + L Sbjct: 67 DVITEVSDEETAAGLWLKLESLYMTKSLTNKLLLKQRLFGLRMAEGTQLREHLEQLNTLL 126 Query: 1278 SDCISLGAKFEDSQKALFLLIFLLPKWEPFVDQMTTLKKEKFVYSDIVQAVLAKASRKGT 1099 + ++ K ED AL LL+ L +E FV Q + K+ ++ A+ ++ R Sbjct: 127 LELRNIDVKIEDEDAALILLVSLPMSFENFV-QSFIVGKDTVSLEEVRSALHSRELRHKA 185 Query: 1098 LNEEVQADDLSVTWGXXXXXXXXXXXXXXXXRGRDMFKVECYKCKRKGHYKKDCPELKDN 919 + +G V C CK KGH+K DCP+ K Sbjct: 186 NGTSTDIQPSGLFTSSRKGRKNGGKKNKPMSKGAKPDDV-CNYCKEKGHWKFDCPKKKKQ 244 Query: 918 HNKQXXXXXXXXXXXXXXXXXEDILIGGDLAQALTAGSHDHLYDGWMLDTGALYHLCPVR 739 KQ DI AL A H H D W+LD+GA YH+CP R Sbjct: 245 SEKQSVSAAVAEEDTNSEE---DI--------ALVADEHTHHSDVWVLDSGASYHICPRR 293 Query: 738 EWFTTYREVKGSSVMMGDSRPCKTMGVGTVKFQLTDGSCRQLIEVCHIPALSKGLISLGM 559 EWFTTY +V G S+ M +S CK +G G++K + DGS L EV H+P ++K LISL + Sbjct: 294 EWFTTYEQVDGGSISMANSSVCKVVGTGSIKIRTHDGSFCTLNEVRHVPLMTKNLISLSL 353 Query: 558 LEAQGYRYVGENGYCNVYFGDRLLLSAVRHANLY--QGSVVEGGAMV-STVVDEKSLARA 388 L+++G+ + G++G V+ G L+L V LY QGS V G A V S+ +K + + Sbjct: 354 LDSKGFSWSGKDGVLRVWKGSNLILKGVMRGTLYFLQGSTVTGSAHVASSEFHQKDMTK- 412 Query: 387 QLWHMRLGHVGVSELRTLSKRGLLGGDKMAKLDFCEHCVYGKQCRVSFGDGIH 229 LWH+RLGH+G ++ LSK LL G K+ L+FCEHCV+GK R F IH Sbjct: 413 -LWHIRLGHMGERGMQILSKEDLLAGHKVKSLEFCEHCVFGKLHRNKFPKAIH 464 >emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group] Length = 1181 Score = 230 bits (587), Expect = 2e-57 Identities = 155/451 (34%), Positives = 223/451 (49%), Gaps = 13/451 (2%) Frame = -3 Query: 1542 EKVTED*AEK*NKMDQKACSTIHLCLSWNVAYNFADEMTAKGI*DKLQALYLQNDQMSVT 1363 +K T+D + K D+KA S IHL LS N+ E TA G+ KL+ + + D S Sbjct: 41 DKRTQDWSNDEKKRDRKAMSYIHLHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKM 100 Query: 1362 YLQKKLFTFRLQPGRLMTDHINEFECLYSDCISLGAKFEDSQKALFLLIFLLPKWEPFVD 1183 +L++KLF +LQ + DH++ F+ + +D S+ K+++ AL LL L + F D Sbjct: 101 HLKQKLFLHKLQDDGSVMDHLSAFKEIVADLESMEVKYDEKDLALILLCSLPSSYANFRD 160 Query: 1182 QMTTLKKEKFVYSDIVQAVLAKASRKGTLNEE---VQADDLSVTWGXXXXXXXXXXXXXX 1012 + ++ ++ A+ AK K + E QA+ L V Sbjct: 161 TIL-YSRDTLTLKEVYDALHAKEKMKKMVPSEGSNSQAEGLVVRGSQQEKNTNNKSRDKS 219 Query: 1011 XXRGRDMFKVE-----CYKCKRKGHYKKDCPELKDNHNKQXXXXXXXXXXXXXXXXXE-D 850 R K C CKR GH C +L+D + D Sbjct: 220 SSSYRGRSKSRGRYKSCKYCKRDGHDISKCWKLQDKDKRTGKYIPKGKKEEEGKAAVVTD 279 Query: 849 ILIGGDLAQALTAGSHDHLYDGWMLDTGALYHLCPVREWFTTYREVKGSSVMMGDSRPCK 670 +L A + D W+LDT YH+CP R+WF TY V+G +V+MGD PC+ Sbjct: 280 EKSDAELLVAYAGCAQTS--DQWILDTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCE 337 Query: 669 TMGVGTVKFQLTDGSCRQLIEVCHIPALSKGLISLGMLEAQGYRYVGENGYCNVYFGDRL 490 G+GTV+ ++ DG R L +V HIP L + LISL L+ +GY+Y G +G V G + Sbjct: 338 VAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLV 397 Query: 489 LLSA-VRHANLY--QGSVVEGGAMVSTVVDEKSLARA-QLWHMRLGHVGVSELRTLSKRG 322 ++ A ++ ANLY QG+ + G V+TV D S + A LWHMRLGH+ L LSKRG Sbjct: 398 VMKASIKSANLYHLQGTTILGN--VATVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRG 455 Query: 321 LLGGDKMAKLDFCEHCVYGKQCRVSFGDGIH 229 LL G ++KL FCEHC++GK RV F H Sbjct: 456 LLDGQSISKLKFCEHCIFGKHKRVKFNTSTH 486 >gb|AFB73911.1| polyprotein [Citrus sinensis] Length = 1309 Score = 229 bits (583), Expect = 6e-57 Identities = 156/491 (31%), Positives = 243/491 (49%), Gaps = 10/491 (2%) Frame = -3 Query: 1659 FDILRCNGRNNFKAWQMDCKXXXXXXXXXXXXXDKNKPSEKVTED*AEK*NKMDQKACST 1480 ++I + NG NNF W+M K +P E +T+D K N++D A S Sbjct: 5 YEIEKFNG-NNFSLWKMKMKAVLRKNNCLAAIG--ERPME-ITDD---KWNEVDGNAISD 57 Query: 1479 IHLCLSWNVAYNFADEMTAKGI*DKLQALYLQNDQMSVTYLQKKLFTFRLQPGRLMTDHI 1300 +HL L+ V + A++ TAK I D L LY + +L++KL+T R+ ++TDHI Sbjct: 58 LHLALADGVLSSVAEKNTAKEIWDTLTKLYEAKSLHNKIFLKRKLYTLRMAESTMVTDHI 117 Query: 1299 NEFECLYSDCISLGAKFEDSQKALFLLIFLLPKWEPFVDQMTTLKK-EKFVYSDIVQAVL 1123 N + L+S +LG E++++A LL L ++ + +T E V+ D+ +VL Sbjct: 118 NTLKTLFSQLTTLGHNIEENERAELLLQSLPDSYDQLIINLTNNNPVESLVFDDVAASVL 177 Query: 1122 AKASR-KGTLNEEV---QADDLSVTWGXXXXXXXXXXXXXXXXRGRDMFKVECYKCKRKG 955 + SR K N + QA+ LSVT G + R V+CY C +KG Sbjct: 178 NEESRRKNKENRQASSQQAEALSVTRGRSTERGPSGSQNQGRSKFRGKKNVKCYNCGKKG 237 Query: 954 HYKKDCPELKDNHNKQXXXXXXXXXXXXXXXXXEDILIGGDLAQALTAGS-HDHLYDGWM 778 H KK+C + + +IL ++A T L D W+ Sbjct: 238 HVKKECWSNQKRREGKEPETSNAQGCVASTSDDGEILY----SEATTVSEGRKRLSDVWL 293 Query: 777 LDTGALYHLCPVREWFTTYREVKGSSVMMGDSRPCKTMGVGTVKFQLTDGSCRQLIEVCH 598 +D+GA +H+ REWF TY + G SV MG+ + G+GT+K ++ DG+ R + EV H Sbjct: 294 IDSGATWHMTSRREWFHTYEPISGGSVYMGNDHALEIAGIGTIKIKMFDGTIRTIGEVRH 353 Query: 597 IPALSKGLISLGMLEAQGYRYVGENGYCNVYFGDRLLLSAVR-HANLYQ---GSVVEGGA 430 + L K L+SLG +++ GY+ ENG + G +L+ + ANL+ ++ E A Sbjct: 354 VNGLKKNLLSLGQMDSHGYKTHVENGIMKIVKGALVLMKVEKIGANLFMLKGETLQEADA 413 Query: 429 MVSTVVDEKSLARAQLWHMRLGHVGVSELRTLSKRGLLGGDKMAKLDFCEHCVYGKQCRV 250 V++ +E ++ +WH++LGH+ L+ LS+R LL G K L FCEHCV KQ R+ Sbjct: 414 CVASNGEESTM----MWHLKLGHMSEQGLKILSERKLLPGLKSVSLPFCEHCVTSKQHRL 469 Query: 249 SFGDGIHYGGC 217 F I C Sbjct: 470 KFSRSIARSKC 480 >gb|AFB73912.1| polyprotein [Citrus sinensis] Length = 1309 Score = 226 bits (575), Expect = 5e-56 Identities = 152/490 (31%), Positives = 240/490 (48%), Gaps = 9/490 (1%) Frame = -3 Query: 1659 FDILRCNGRNNFKAWQMDCKXXXXXXXXXXXXXDKNKPSEKVTED*AEK*NKMDQKACST 1480 ++I + NG NNF W+M K +P E +T+D K N++D A S Sbjct: 5 YEIEKFNG-NNFSLWKMKMKAVLRKNNCLAAIG--ERPME-ITDD---KWNEVDSNAISD 57 Query: 1479 IHLCLSWNVAYNFADEMTAKGI*DKLQALYLQNDQMSVTYLQKKLFTFRLQPGRLMTDHI 1300 +HL L+ V + A++ TAK I D L LY + +L++KL+T R+ ++TDHI Sbjct: 58 LHLALADGVLSSVAEKNTAKEIWDTLTKLYEAKSLHNKIFLKRKLYTLRMAESTMVTDHI 117 Query: 1299 NEFECLYSDCISLGAKFEDSQKALFLLIFLLPKWEPFVDQMTTLKK-EKFVYSDIVQAVL 1123 N + L+S +LG E++++A LL L ++ + +T + V+ D+ +VL Sbjct: 118 NTLKTLFSQLTTLGHNIEENERAELLLQSLPDSYDQLIINLTNNNPVDSLVFDDVAASVL 177 Query: 1122 AKASR-KGTLNEEV---QADDLSVTWGXXXXXXXXXXXXXXXXRGRDMFKVECYKCKRKG 955 + SR K N + QA+ LSVT G + R V+CY C +KG Sbjct: 178 NEESRRKNKENRQASSQQAEALSVTRGRSTERGPSGSQNHGRSKSRSKKNVKCYNCGKKG 237 Query: 954 HYKKDCPELKDNHNKQXXXXXXXXXXXXXXXXXEDILIGGDLAQALTAGSHDHLYDGWML 775 H KK+C + + +IL + + L D W++ Sbjct: 238 HVKKECWSNQKRREGKEPESSNAQGCVASTSDDGEILYS---EATIVSEGRKRLSDVWLI 294 Query: 774 DTGALYHLCPVREWFTTYREVKGSSVMMGDSRPCKTMGVGTVKFQLTDGSCRQLIEVCHI 595 D+GA +H+ REWF TY + G SV MG+ + G+GT+K ++ DG+ R + EV H+ Sbjct: 295 DSGATWHMTSRREWFHTYEPISGGSVYMGNDHALEIAGIGTIKIKMFDGTIRTIEEVRHV 354 Query: 594 PALSKGLISLGMLEAQGYRYVGENGYCNVYFGDRLLLSAVR-HANLYQ---GSVVEGGAM 427 L K L+SLG +++ G + ENG + G +L+ A + ANL+ ++ E A Sbjct: 355 NGLKKNLLSLGQMDSHGCKTHVENGIMKIVKGALVLMKAEKICANLFMLKGETLQEADAC 414 Query: 426 VSTVVDEKSLARAQLWHMRLGHVGVSELRTLSKRGLLGGDKMAKLDFCEHCVYGKQCRVS 247 V++ +E ++ +WH++LGH+ L+ LS+R L G K L FCEHCV KQ R+ Sbjct: 415 VASNGEESTM----MWHLKLGHMSEQGLKILSERKLPPGLKSVSLPFCEHCVTSKQHRLK 470 Query: 246 FGDGIHYGGC 217 F I C Sbjct: 471 FSRSIARSKC 480 >ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha] Length = 1773 Score = 224 bits (570), Expect = 2e-55 Identities = 147/429 (34%), Positives = 213/429 (49%), Gaps = 12/429 (2%) Frame = -3 Query: 1479 IHLCLSWNVAYNFADEMTAKGI*DKLQALYLQNDQMSVTYLQKKLFTFRLQPGRLMTDHI 1300 IHL LS N+ E TA + KL+ + + D S +L++KLF +LQ + DH+ Sbjct: 4 IHLHLSNNILQEVLKEKTATALWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDESVMDHL 63 Query: 1299 NEFECLYSDCISLGAKFEDSQKALFLLIFLLPKWEPFVDQMTTLKKEKFVYSDIVQAVLA 1120 + F+ + +D S+ K+++ L LL L + F D + ++ ++ A+ A Sbjct: 64 STFKEIVADLESMEIKYDEEDLGLILLCSLPSSYANFRDTIL-YSRDTLTLQEVYDALHA 122 Query: 1119 KASRKGTLNEE---VQADDLSVTWGXXXXXXXXXXXXXXXXRGRDMFKVE-----CYKCK 964 K K + E Q + L V R K C CK Sbjct: 123 KEKMKKMVPSEGSNSQPESLVVRGRQQEKNTDNKSRDKSSSGYRGRSKSRGRYKSCKYCK 182 Query: 963 RKGHYKKDCPELKDNH-NKQXXXXXXXXXXXXXXXXXEDILIGGDLAQALTAGSHDHLYD 787 R GH DC +L++ +K D +L A D Sbjct: 183 RGGHDISDCWKLQNKEKHKGNYKPKGKQEEQGKAAVATDNKPDAELLVAYAGCVQTS--D 240 Query: 786 GWMLDTGALYHLCPVREWFTTYREVKGSSVMMGDSRPCKTMGVGTVKFQLTDGSCRQLIE 607 W+LDTG YH+CP R+WFTTY V+G +V+MGD+ PCK GVGT++ ++ DG R L + Sbjct: 241 EWLLDTGCTYHMCPNRDWFTTYEPVQGGNVLMGDNTPCKVAGVGTIQIKMFDGCIRTLSD 300 Query: 606 VCHIPALSKGLISLGMLEAQGYRYVGENGYCNVYFGDRLLLSA-VRHANLY--QGSVVEG 436 V HIP+L + LISL L+ +GYRY G +G V G +++ A +++A+LY QG+ + G Sbjct: 301 VRHIPSLKRNLISLSTLDRKGYRYSGGDGILKVTKGSLVVMKADIKNADLYHLQGTTIVG 360 Query: 435 GAMVSTVVDEKSLARAQLWHMRLGHVGVSELRTLSKRGLLGGDKMAKLDFCEHCVYGKQC 256 V+ V D SL+ + LWHMRLGH+ L LSKRGLL G + KL FCEHC++GK Sbjct: 361 N--VAAVTD--SLSNSDLWHMRLGHMSEIGLAELSKRGLLDGQNIGKLKFCEHCIFGKHK 416 Query: 255 RVSFGDGIH 229 RV F H Sbjct: 417 RVKFTTSTH 425 >gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group] Length = 1280 Score = 219 bits (559), Expect = 4e-54 Identities = 149/450 (33%), Positives = 219/450 (48%), Gaps = 12/450 (2%) Frame = -3 Query: 1542 EKVTED*AEK*NKMDQKACSTIHLCLSWNVAYNFADEMTAKGI*DKLQALYLQNDQMSVT 1363 +K T+D + K D+KA S IHL LS N+ E TA G+ KL+ + + D S Sbjct: 76 DKRTQDWSNDEKKKDRKAMSYIHLHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKM 135 Query: 1362 YLQKKLFTFRLQPGRLMTDHINEFECLYSDCISLGAKFEDSQKALFLLIFLLPKWEPFVD 1183 +L++KLF +LQ + DH++ F+ + +D S+ K+++ L LL L + F D Sbjct: 136 HLKQKLFLHKLQDDGSVMDHLSTFKEIVADLESIEVKYDEEDLGLILLCSLPSSYANFRD 195 Query: 1182 QMTTLKKEKFVYSDIVQAVLAKASRKGTLNEE---VQADDLSVTWGXXXXXXXXXXXXXX 1012 + + + ++ A+ AK K + E QA+ L V Sbjct: 196 TIL-YSHDTLILKEVYDALHAKEKMKKMVPSEGSNSQAEGLVVRGRQQEKNTKNQSRDKS 254 Query: 1011 XXRGRDMFKVE-----CYKCKRKGHYKKDCPELKDNHNKQXXXXXXXXXXXXXXXXXEDI 847 R K C CKR GH +C +L+D +K+ Sbjct: 255 SSSYRGRSKSRGRYKSCKYCKRDGHDISECWKLQDK-DKRTGKYIPKGKKEEEGKAAVVT 313 Query: 846 LIGGDLAQALTAGSHDHLYDGWMLDTGALYHLCPVREWFTTYREVKGSSVMMGDSRPCKT 667 D + D W+LDT YH+CP R+WF TY ++G +V+MGD PC+ Sbjct: 314 DEKSDTELLVAYAGCAQTSDQWILDTAWTYHMCPNRDWFATYEALQGGTVLMGDDTPCEV 373 Query: 666 MGVGTVKFQLTDGSCRQLIEVCHIPALSKGLISLGMLEAQGYRYVGENGYCNVYFGDRLL 487 G+GTV+ ++ DG R L +V HIP L + LISL L+ +GY+Y G +G V G ++ Sbjct: 374 AGIGTVQIKMFDGYIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVV 433 Query: 486 LSA-VRHANLY--QGSVVEGGAMVSTVVDEKSLARA-QLWHMRLGHVGVSELRTLSKRGL 319 + A ++ ANLY +G+ + G V+ V D S + A LWHMRLGH+ L LSKR L Sbjct: 434 MKADIKSANLYHLRGTTILGN--VAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKREL 491 Query: 318 LGGDKMAKLDFCEHCVYGKQCRVSFGDGIH 229 L G + KL FCEHC++GK RV F H Sbjct: 492 LDGQSIGKLKFCEHCIFGKHKRVKFNTSTH 521 >gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group] Length = 1312 Score = 219 bits (559), Expect = 4e-54 Identities = 149/450 (33%), Positives = 219/450 (48%), Gaps = 12/450 (2%) Frame = -3 Query: 1542 EKVTED*AEK*NKMDQKACSTIHLCLSWNVAYNFADEMTAKGI*DKLQALYLQNDQMSVT 1363 +K T+D + K D+KA S IHL LS N+ E TA G+ KL+ + + D S Sbjct: 76 DKRTQDWSNDEKKKDRKAMSYIHLHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKM 135 Query: 1362 YLQKKLFTFRLQPGRLMTDHINEFECLYSDCISLGAKFEDSQKALFLLIFLLPKWEPFVD 1183 +L++KLF +LQ + DH++ F+ + +D S+ K+++ L LL L + F D Sbjct: 136 HLKQKLFLHKLQDDGSVMDHLSTFKEIVADLESIEVKYDEEDLGLILLCSLPSSYANFRD 195 Query: 1182 QMTTLKKEKFVYSDIVQAVLAKASRKGTLNEE---VQADDLSVTWGXXXXXXXXXXXXXX 1012 + + + ++ A+ AK K + E QA+ L V Sbjct: 196 TIL-YSHDTLILKEVYDALHAKEKMKKMVPSEGSNSQAEGLVVRGRQQEKNTKNQSRDKS 254 Query: 1011 XXRGRDMFKVE-----CYKCKRKGHYKKDCPELKDNHNKQXXXXXXXXXXXXXXXXXEDI 847 R K C CKR GH +C +L+D +K+ Sbjct: 255 SSSYRGRSKSRGRYKSCKYCKRDGHDISECWKLQDK-DKRTGKYIPKGKKEEEGKAAVVT 313 Query: 846 LIGGDLAQALTAGSHDHLYDGWMLDTGALYHLCPVREWFTTYREVKGSSVMMGDSRPCKT 667 D + D W+LDT YH+CP R+WF TY ++G +V+MGD PC+ Sbjct: 314 DEKSDTELLVAYAGCAQTSDQWILDTAWTYHMCPNRDWFATYEALQGGTVLMGDDTPCEV 373 Query: 666 MGVGTVKFQLTDGSCRQLIEVCHIPALSKGLISLGMLEAQGYRYVGENGYCNVYFGDRLL 487 G+GTV+ ++ DG R L +V HIP L + LISL L+ +GY+Y G +G V G ++ Sbjct: 374 AGIGTVQIKMFDGYIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVV 433 Query: 486 LSA-VRHANLY--QGSVVEGGAMVSTVVDEKSLARA-QLWHMRLGHVGVSELRTLSKRGL 319 + A ++ ANLY +G+ + G V+ V D S + A LWHMRLGH+ L LSKR L Sbjct: 434 MKADIKSANLYHLRGTTILGN--VAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKREL 491 Query: 318 LGGDKMAKLDFCEHCVYGKQCRVSFGDGIH 229 L G + KL FCEHC++GK RV F H Sbjct: 492 LDGQSIGKLKFCEHCIFGKHKRVKFNTSTH 521 >gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa Japonica Group] gi|77548751|gb|ABA91548.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group] Length = 2340 Score = 214 bits (546), Expect = 1e-52 Identities = 148/453 (32%), Positives = 219/453 (48%), Gaps = 15/453 (3%) Frame = -3 Query: 1542 EKVTED*AEK*NKMDQKACSTIHLCLSWNVAYNFADEMTAKGI*DKLQALYLQNDQMSVT 1363 +K T D + K D+KA S IHL LS N+ E A G+ KL+ + + D S Sbjct: 248 DKRTHDWSNDEKKRDRKAMSYIHLHLSNNILQEVLKEEIAAGLWLKLEQICMTKDLTSKM 307 Query: 1362 YLQKKLFTFRLQPGRLMTDHINEFECLYSDCISLGAKFEDSQKALFLLIFLLPKWEPFVD 1183 +L++ LF +LQ + DH++ F+ + +D S+ K+++ L LL L + F D Sbjct: 308 HLKQTLFLHKLQDDGSVMDHLSAFKEIIADLESMEVKYDEEDLGLILLCSLPSSYANFRD 367 Query: 1182 QMTTLKKEKFVYSDIVQAVLAKASRKGTLNEE---VQADDLSVTWGXXXXXXXXXXXXXX 1012 + ++ ++ A+ K K + E QA+ L + WG Sbjct: 368 TIL-YSRDTLTLKEVYDALHVKEKMKKMVPSEGSNSQAEGL-IVWGRQQEKNTKNQSRDK 425 Query: 1011 XXRG-------RDMFKVECYKCKRKGHYKKDCPELKDNHNKQXXXXXXXXXXXXXXXXXE 853 R +K C CKR GH +C +L D + Sbjct: 426 SSSSYRGRSKSRGRYK-SCKYCKRDGHDIFECWKLHDKDKRTGKYVPKGKKEEEGKAAVV 484 Query: 852 -DILIGGDLAQALTAGSHDHLYDGWMLDTGALYHLCPVREWFTTYREVKGSSVMMGDSRP 676 D +L A + D W+L+T +YH+CP R+WF TY V+ +V+MGD P Sbjct: 485 TDEKSDAELLVAYAGCAQTS--DQWILNTACIYHMCPNRDWFATYEAVQVGTVLMGDDTP 542 Query: 675 CKTMGVGTVKFQLTDGSCRQLIEVCHIPALSKGLISLGMLEAQGYRYVGENGYCNVYFGD 496 C+ G+GTV+ ++ DG R L +V HIP L + LISL L+ +GY+Y G +G V G Sbjct: 543 CEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGS 602 Query: 495 RLLLSA-VRHANLY--QGSVVEGGAMVSTVVDEKSLARA-QLWHMRLGHVGVSELRTLSK 328 +++ A ++ ANLY +G+ + G V+ V D S + A LWHMRLGH+ L LSK Sbjct: 603 LVVMKADIKSANLYHLRGTTILGN--VAAVSDSLSNSDATNLWHMRLGHMTEIGLAELSK 660 Query: 327 RGLLGGDKMAKLDFCEHCVYGKQCRVSFGDGIH 229 RGLL G + KL FCEHC++GK RV F H Sbjct: 661 RGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTH 693 >ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group] gi|255679807|dbj|BAF27642.2| Os11g0157000 [Oryza sativa Japonica Group] Length = 1601 Score = 214 bits (546), Expect = 1e-52 Identities = 148/453 (32%), Positives = 219/453 (48%), Gaps = 15/453 (3%) Frame = -3 Query: 1542 EKVTED*AEK*NKMDQKACSTIHLCLSWNVAYNFADEMTAKGI*DKLQALYLQNDQMSVT 1363 +K T D + K D+KA S IHL LS N+ E A G+ KL+ + + D S Sbjct: 41 DKRTHDWSNDEKKRDRKAMSYIHLHLSNNILQEVLKEEIAAGLWLKLEQICMTKDLTSKM 100 Query: 1362 YLQKKLFTFRLQPGRLMTDHINEFECLYSDCISLGAKFEDSQKALFLLIFLLPKWEPFVD 1183 +L++ LF +LQ + DH++ F+ + +D S+ K+++ L LL L + F D Sbjct: 101 HLKQTLFLHKLQDDGSVMDHLSAFKEIIADLESMEVKYDEEDLGLILLCSLPSSYANFRD 160 Query: 1182 QMTTLKKEKFVYSDIVQAVLAKASRKGTLNEE---VQADDLSVTWGXXXXXXXXXXXXXX 1012 + ++ ++ A+ K K + E QA+ L + WG Sbjct: 161 TIL-YSRDTLTLKEVYDALHVKEKMKKMVPSEGSNSQAEGL-IVWGRQQEKNTKNQSRDK 218 Query: 1011 XXRG-------RDMFKVECYKCKRKGHYKKDCPELKDNHNKQXXXXXXXXXXXXXXXXXE 853 R +K C CKR GH +C +L D + Sbjct: 219 SSSSYRGRSKSRGRYK-SCKYCKRDGHDIFECWKLHDKDKRTGKYVPKGKKEEEGKAAVV 277 Query: 852 -DILIGGDLAQALTAGSHDHLYDGWMLDTGALYHLCPVREWFTTYREVKGSSVMMGDSRP 676 D +L A + D W+L+T +YH+CP R+WF TY V+ +V+MGD P Sbjct: 278 TDEKSDAELLVAYAGCAQTS--DQWILNTACIYHMCPNRDWFATYEAVQVGTVLMGDDTP 335 Query: 675 CKTMGVGTVKFQLTDGSCRQLIEVCHIPALSKGLISLGMLEAQGYRYVGENGYCNVYFGD 496 C+ G+GTV+ ++ DG R L +V HIP L + LISL L+ +GY+Y G +G V G Sbjct: 336 CEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGS 395 Query: 495 RLLLSA-VRHANLY--QGSVVEGGAMVSTVVDEKSLARA-QLWHMRLGHVGVSELRTLSK 328 +++ A ++ ANLY +G+ + G V+ V D S + A LWHMRLGH+ L LSK Sbjct: 396 LVVMKADIKSANLYHLRGTTILGN--VAAVSDSLSNSDATNLWHMRLGHMTEIGLAELSK 453 Query: 327 RGLLGGDKMAKLDFCEHCVYGKQCRVSFGDGIH 229 RGLL G + KL FCEHC++GK RV F H Sbjct: 454 RGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTH 486 >emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group] Length = 1205 Score = 208 bits (529), Expect = 1e-50 Identities = 149/451 (33%), Positives = 213/451 (47%), Gaps = 13/451 (2%) Frame = -3 Query: 1542 EKVTED*AEK*NKMDQKACSTIHLCLSWNVAYNFADEMTAKGI*DKLQALYLQNDQMSVT 1363 +K T+D + KMD+KA S IHL LS N+ E TA G+ KL+ + + D + Sbjct: 41 DKRTQDWSNDEKKMDRKAMSYIHLHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTN-- 98 Query: 1362 YLQKKLFTFRLQPGRLMTDHINEFECLYSDCISLGAKFEDSQKALFLLIFLLPKWEPFVD 1183 G +M DH++ F+ + +D S+ K+++ L LL L + F D Sbjct: 99 ------------DGSVM-DHLSVFKEIVADLESMEVKYDEEDLGLILLCSLPSSYANFRD 145 Query: 1182 QMTTLKKEKFVYSDIVQAVLAKASRKGTLNEE---VQADDLSVTWGXXXXXXXXXXXXXX 1012 + ++ ++ A+ AK K + E QA+ L V Sbjct: 146 TIL-YSRDTLTLKEVYDALHAKEKMKKMVPSEGSNSQAEGLVVQGSQQEKNTNNKSRDKS 204 Query: 1011 XXRGRDMFKVE-----CYKCKRKGHYKKDCPELKDNHNKQXXXXXXXXXXXXXXXXXE-D 850 R K C CKR GH C +L+D + D Sbjct: 205 SSSYRGRSKSRGRYKSCKYCKRDGHDISKCWKLQDKDKRTGKYIPKGKKEDEGKAAVVTD 264 Query: 849 ILIGGDLAQALTAGSHDHLYDGWMLDTGALYHLCPVREWFTTYREVKGSSVMMGDSRPCK 670 +L A + D W+LDT YH+CP R+WF TY V+G +V+MGD PC+ Sbjct: 265 EKSDAELLVAYAGCAQTS--DQWILDTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCE 322 Query: 669 TMGVGTVKFQLTDGSCRQLIEVCHIPALSKGLISLGMLEAQGYRYVGENGYCNVYFGDRL 490 G+GTV+ ++ DG R L +V HIP L + LISL L+ +GY+Y G +G V G + Sbjct: 323 VAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDCKGYKYSGGDGILKVTKGSLV 382 Query: 489 LLSA-VRHANLY--QGSVVEGGAMVSTVVDEKSLARA-QLWHMRLGHVGVSELRTLSKRG 322 ++ A ++ ANLY QG+ + G V+TV D S + A LWHMRLGH+ L LS RG Sbjct: 383 VMKADIKSANLYHLQGTTILGN--VATVSDSLSNSDATNLWHMRLGHMSEIGLAELSMRG 440 Query: 321 LLGGDKMAKLDFCEHCVYGKQCRVSFGDGIH 229 LL G + KL FCEHC++GK RV F H Sbjct: 441 LLDGQSIGKLKFCEHCIFGKHKRVKFNTSTH 471 >gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group] Length = 1211 Score = 205 bits (521), Expect = 1e-49 Identities = 146/451 (32%), Positives = 214/451 (47%), Gaps = 13/451 (2%) Frame = -3 Query: 1542 EKVTED*AEK*NKMDQKACSTIHLCLSWNVAYNFADEMTAKGI*DKLQALYLQNDQMSVT 1363 +K T+D + K D+K S IHL LS N+ E TA G+ KL+ + + D S Sbjct: 41 DKRTQDWSNDEKKRDRKTMSYIHLHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKM 100 Query: 1362 YLQKKLFTFRLQPGRLMTDHINEFECLYSDCISLGAKFEDSQKALFLLIFLLPKWEPFVD 1183 +L++KLF +LQ + DH++ F+ + +D S+ K+++ L LL L + F D Sbjct: 101 HLKQKLFLHKLQDDGSVMDHLSAFKKIVADLESMEVKYDEEDLCLILLCSLPSSYANFRD 160 Query: 1182 QMTTLKKEKFVYSDIVQAVLAKASRKGTLNEE---VQADDLSVTWGXXXXXXXXXXXXXX 1012 + + ++ A+ AK K + E QA+ L V Sbjct: 161 TIL-YSCDTLTLKEVYDALHAKEKIKKMVPSEGSNSQAEGLVVRGRQQEKNTNSKSRDKS 219 Query: 1011 XXRGRDMFKVE-----CYKCKRKGHYKKDCPELKDNHNKQXXXXXXXXXXXXXXXXXE-D 850 R K C KR GH +C +L+D + D Sbjct: 220 SSSYRGRSKSRGRYKSCKYYKRDGHDISECWKLQDKDKRTGKYVPKGKKEEEGKAAVVTD 279 Query: 849 ILIGGDLAQALTAGSHDHLYDGWMLDTGALYHLCPVREWFTTYREVKGSSVMMGDSRPCK 670 +L A + D W+LDT YH+C R+WF TY V+G +V+MGD PC+ Sbjct: 280 EKSDAELLVAYAGCAQTS--DQWILDTACTYHMCLNRDWFATYEAVQGGTVLMGDDTPCE 337 Query: 669 TMGVGTVKFQLTDGSCRQLIEVCHIPALSKGLISLGMLEAQGYRYVGENGYCNVYFGDRL 490 GV TV+ ++ DG R L +V HIP L + LISL L+ + Y+Y G +G V G + Sbjct: 338 VAGVETVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKVYKYSGGDGILKVTKGSLV 397 Query: 489 LLSA-VRHANLY--QGSVVEGGAMVSTVVDEKSLARA-QLWHMRLGHVGVSELRTLSKRG 322 ++ A ++ ANLY +G+ + G ++ V D + A LWHMRLGH+ L LSKRG Sbjct: 398 VMKADIKSANLYHVRGTTILGN--IAAVSDSLYNSDATNLWHMRLGHMSEIGLAELSKRG 455 Query: 321 LLGGDKMAKLDFCEHCVYGKQCRVSFGDGIH 229 LL G + KL FCEHC++GK RV F H Sbjct: 456 LLDGQSIGKLKFCEHCIFGKHKRVKFNTSTH 486 >gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris] Length = 867 Score = 204 bits (518), Expect = 2e-49 Identities = 129/352 (36%), Positives = 177/352 (50%), Gaps = 10/352 (2%) Frame = -3 Query: 1254 KFEDSQKALFLLIFLLPKWEPFVDQMTTLKKEKFVYSDIVQAVLA--------KASRKGT 1099 KFED AL LL L ++E + T L ++ V D+V + L K K T Sbjct: 79 KFEDEDLALMLLSSLPDEFEHL--ETTLLHGKENVSLDVVCSALYSHELRKQDKMKTKST 136 Query: 1098 LNEEVQADDLSVTWGXXXXXXXXXXXXXXXXRGRDMFKVECYKCKRKGHYKKDCPELKDN 919 +EE ++ +GR + K EC C KGH+KKDCP+L+ Sbjct: 137 TSEE------ALVARGRQQSQTKERRGMSKSKGRAVAKDECAFCHEKGHWKKDCPKLQ-- 188 Query: 918 HNKQXXXXXXXXXXXXXXXXXEDILIGGDLAQALTAGSHDHLYDGWMLDTGALYHLCPVR 739 K+ DI + L+ +L D W+LD+G YH+CP+R Sbjct: 189 --KKEKVLQDANVAECKSDVESDISLIVSLSASL-------YLDEWILDSGCTYHMCPIR 239 Query: 738 EWFTTYREVKGSSVMMGDSRPCKTMGVGTVKFQLTDGSCRQLIEVCHIPALSKGLISLGM 559 +WF ++E+ G V MG+ PCKT+G+G++K + DGS R L +V ++P L K LISLG Sbjct: 240 DWFFEFQELDGGVVYMGNDNPCKTVGIGSIKLRNHDGSTRILRDVRYVPKLKKNLISLGA 299 Query: 558 LEAQGYRYVGENGYCNVYFGDRLLLSAVRHANL--YQGSVVEGGAMVSTVVDEKSLARAQ 385 LE++G +G G ++L V NL YQGS V G +T +K + Sbjct: 300 LESKGLVVTMRDGILKATSGALVMLKGVMKNNLYYYQGSTVVGTVAAATSSSKKDAEATK 359 Query: 384 LWHMRLGHVGVSELRTLSKRGLLGGDKMAKLDFCEHCVYGKQCRVSFGDGIH 229 LWHMRLGH G L+ +K+GLL G K KL+FCEHCV GKQ RV FG IH Sbjct: 360 LWHMRLGHAGEKSLQIFTKQGLLKGTKACKLEFCEHCVLGKQRRVKFGTAIH 411 >gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus] Length = 1305 Score = 203 bits (516), Expect = 4e-49 Identities = 140/481 (29%), Positives = 234/481 (48%), Gaps = 9/481 (1%) Frame = -3 Query: 1659 FDILRCNGRNNFKAWQMDCKXXXXXXXXXXXXXDKNKPSEKVTED*AEK*NKMDQKACST 1480 F+I + NG +NF W++ K +P++ +T+D K +MD A + Sbjct: 5 FEIPKFNG-SNFSLWKLKIKAILRKDNCLPAID--GRPAD-ITDD---KRKEMDDNAVAN 57 Query: 1479 IHLCLSWNVAYNFADEMTAKGI*DKLQALYLQNDQMSVTYLQKKLFTFRLQPGRLMTDHI 1300 +HL ++ +V + A++ TAK I D L LY + +L+++L+TFR+ M DHI Sbjct: 58 LHLAVADSVLSSIAEKKTAKKIWDTLIQLYEVKSLHNRIFLKRRLYTFRMSESTSMPDHI 117 Query: 1299 NEFECLYSDCISLGAKFEDSQKALFLLIFLLPKWEPFVDQMTTLK-KEKFVYSDIVQAVL 1123 N +++ + ++++A LL L ++ V +T ++ ++D+ A+L Sbjct: 118 NNLNTMFAQLSASDFTIGENERAEVLLQSLPDSYDQLVINITNNNIVDRLSFNDVAGAIL 177 Query: 1122 AKASRKGTLNEEV----QADDLSVTWGXXXXXXXXXXXXXXXXRGRDMFKVECYKCKRKG 955 + SR+ + Q + L+VT G R ++CY C ++G Sbjct: 178 EEESRRKNKEDRQDSSKQMEALTVTRGRSTERGPSGSQNHGRSTSRRKTNLKCYNCGKRG 237 Query: 954 HYKKDCPELKDNHNKQXXXXXXXXXXXXXXXXXEDILIGGDLAQALTAGSHDHLYDGWML 775 H KKDC K + K ++L A++ + L D W++ Sbjct: 238 HLKKDCWSNKKSGEKSSEASTSQGCVASTSDDG-EVLYS---EAAVSTKGKNRLTDVWIV 293 Query: 774 DTGALYHLCPVREWFTTYREVKGSSVMMGDSRPCKTMGVGTVKFQLTDGSCRQLIEVCHI 595 D+GA +H+ P R+WF TY V +V MG+ + +G+GTVK ++ DG+ R L EV H+ Sbjct: 294 DSGATWHMTPRRDWFCTYEPVSEGNVFMGNDHALEIVGIGTVKIKMYDGTIRTLQEVRHV 353 Query: 594 PALSKGLISLGMLEAQGYRYVGENGYCNVYFGDRLLLSAVR-HANLYQ--GSVVE-GGAM 427 L+K L+S+G L+ GY+Y + G V G +++ A + ANLY G + A Sbjct: 354 KELAKNLLSVGQLDDLGYKYDIQGGILKVVKGSLVVMKAKKVAANLYMLLGDTWQMADAS 413 Query: 426 VSTVVDEKSLARAQLWHMRLGHVGVSELRTLSKRGLLGGDKMAKLDFCEHCVYGKQCRVS 247 V+ E++ +WH RLGH+ L+ L++R L+ G K L FCEHCV KQ R+ Sbjct: 414 VAVGSQEET---TMMWHRRLGHMSERGLKVLAERNLIPGLKSVSLPFCEHCVISKQHRLK 470 Query: 246 F 244 F Sbjct: 471 F 471 >gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula] Length = 1305 Score = 203 bits (516), Expect = 4e-49 Identities = 140/481 (29%), Positives = 233/481 (48%), Gaps = 9/481 (1%) Frame = -3 Query: 1659 FDILRCNGRNNFKAWQMDCKXXXXXXXXXXXXXDKNKPSEKVTED*AEK*NKMDQKACST 1480 F+I + NGRN F W++ K +P++ +T+ EK +MD A + Sbjct: 5 FEIEKFNGRN-FSLWKL--KIRAILRKDNCLDAIDGRPAD-ITD---EKWKEMDDNAVAN 57 Query: 1479 IHLCLSWNVAYNFADEMTAKGI*DKLQALYLQNDQMSVTYLQKKLFTFRLQPGRLMTDHI 1300 +HL ++ +V + A++ TAK I D L LY + +L+++L+T R+ +TDHI Sbjct: 58 LHLAMADSVLSSIAEKKTAKEIWDTLIKLYEVKSLHNRIFLKRRLYTLRMGESTSVTDHI 117 Query: 1299 NEFECLYSDCISLGAKFEDSQKALFLLIFLLPKWEPFVDQMTTLK-KEKFVYSDIVQAVL 1123 N L+S + K ++++A LL L ++ + +T + + D+ A+L Sbjct: 118 NTLNTLFSQLTASDFKIAENERAELLLQSLPDSYDQLIINITNNNITDTLHFDDVAGAIL 177 Query: 1122 AKASRKGTLNEEV----QADDLSVTWGXXXXXXXXXXXXXXXXRGRDMFKVECYKCKRKG 955 + SR+ E QA+ L++T G + R ++CY C KG Sbjct: 178 EEESRRKNKEERSESSKQAEALTMTRGRSTERGPSGSQNHGRSKSRRKKNIKCYGCGMKG 237 Query: 954 HYKKDCPELKDNHNKQXXXXXXXXXXXXXXXXXEDILIGGDLAQALTAGSHDHLYDGWML 775 H KK+C +K N K +IL A ++ L D W++ Sbjct: 238 HVKKECWNIKKNGEKNSEASTSQGCVASTSDDG-EILYS---EAATSSKGERRLNDVWIM 293 Query: 774 DTGALYHLCPVREWFTTYREVKGSSVMMGDSRPCKTMGVGTVKFQLTDGSCRQLIEVCHI 595 D+GA +H+ P R+WF +Y + SV MG+ + GVGT++ ++ DG+ R++ V H+ Sbjct: 294 DSGATWHMTPHRDWFFSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQGVRHV 353 Query: 594 PALSKGLISLGMLEAQGYRYVGENGYCNVYFGDRLLLSAVR-HANLYQ---GSVVEGGAM 427 L K L+S+G L+ G + E+G V G+ +++ A + +NLY ++ E A Sbjct: 354 KGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQEADAS 413 Query: 426 VSTVVDEKSLARAQLWHMRLGHVGVSELRTLSKRGLLGGDKMAKLDFCEHCVYGKQCRVS 247 V+ E++ +WH RLGH+ L+ L++R LL G K L FCEHCV KQ R+ Sbjct: 414 VAASSQEET---TMMWHQRLGHMSERGLKVLAERNLLHGLKAVNLPFCEHCVISKQHRLK 470 Query: 246 F 244 F Sbjct: 471 F 471 >gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula] Length = 1305 Score = 202 bits (515), Expect = 5e-49 Identities = 140/481 (29%), Positives = 232/481 (48%), Gaps = 9/481 (1%) Frame = -3 Query: 1659 FDILRCNGRNNFKAWQMDCKXXXXXXXXXXXXXDKNKPSEKVTED*AEK*NKMDQKACST 1480 F+I + NGRN F W++ K +P++ +T+ EK +MD A + Sbjct: 5 FEIEKFNGRN-FSLWKL--KIRAILRKDNCLDAIDGRPAD-ITD---EKWKEMDDNAVAN 57 Query: 1479 IHLCLSWNVAYNFADEMTAKGI*DKLQALYLQNDQMSVTYLQKKLFTFRLQPGRLMTDHI 1300 +HL ++ +V + A++ TAK I D L LY + +L+++L+T R+ +TDHI Sbjct: 58 LHLAMADSVLSSIAEKKTAKEIWDTLIKLYEVKSLHNRIFLKRRLYTLRMGESTSVTDHI 117 Query: 1299 NEFECLYSDCISLGAKFEDSQKALFLLIFLLPKWEPFVDQMTTLK-KEKFVYSDIVQAVL 1123 N L+S + K ++++A LL L ++ + +T + + D+ A+L Sbjct: 118 NTLNTLFSQLTASDFKIAENERAELLLQSLPDSYDQLIINITNNNIADTLHFDDVAGAIL 177 Query: 1122 AKASRKGTLNEEV----QADDLSVTWGXXXXXXXXXXXXXXXXRGRDMFKVECYKCKRKG 955 + SR+ E QA+ L++T G + R ++CY C KG Sbjct: 178 EEESRRKNKEERSESSKQAEALTMTRGRSTERGPSGSQNHGRSKSRRKKNIKCYGCGMKG 237 Query: 954 HYKKDCPELKDNHNKQXXXXXXXXXXXXXXXXXEDILIGGDLAQALTAGSHDHLYDGWML 775 H KK+C +K N K +IL A ++ L D W++ Sbjct: 238 HVKKECWNIKKNGEKNSEASTSQGCVASTSDDG-EILYS---EAATSSKGERRLNDVWIM 293 Query: 774 DTGALYHLCPVREWFTTYREVKGSSVMMGDSRPCKTMGVGTVKFQLTDGSCRQLIEVCHI 595 D+GA +H+ P R+WF +Y + SV MG+ + GVGT++ ++ DG+ R++ V H+ Sbjct: 294 DSGATWHMTPHRDWFFSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQGVRHV 353 Query: 594 PALSKGLISLGMLEAQGYRYVGENGYCNVYFGDRLLLSAVR-HANLYQ---GSVVEGGAM 427 L K L+S+G L+ G + E+G V G+ +++ A + +NLY ++ E A Sbjct: 354 KGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQEADAS 413 Query: 426 VSTVVDEKSLARAQLWHMRLGHVGVSELRTLSKRGLLGGDKMAKLDFCEHCVYGKQCRVS 247 V+ E++ +WH RLGH+ L+ L +R LL G K L FCEHCV KQ R+ Sbjct: 414 VAAASQEET---TMMWHQRLGHMSERGLKVLVERNLLHGLKTVNLPFCEHCVISKQHRLK 470 Query: 246 F 244 F Sbjct: 471 F 471 >gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] Length = 1241 Score = 201 bits (512), Expect = 1e-48 Identities = 132/400 (33%), Positives = 196/400 (49%), Gaps = 13/400 (3%) Frame = -3 Query: 1389 LQNDQMSVTYLQKKLFTFRLQPGRLMTDHINEFECLYSDCISLGAKFEDSQKALFLLIFL 1210 + D S +L++KLF +LQ + DH++ F+ + +D S+ K+++ L LL L Sbjct: 1 MTKDLTSKMHLKQKLFLHKLQDDGSVMDHLSAFKEIVADLESMEVKYDEEDLGLILLCSL 60 Query: 1209 LPKWEPFVDQMTTLKKEKFVYSDIVQAVLAKASRKGTLNEE---VQADDLSVTWGXXXXX 1039 + F D + ++ ++ A+ AK K + E QA+ L V Sbjct: 61 PSSYANFRDTIL-YSRDTLTLKEVYDALHAKEKMKKMVPSEGSNSQAEGLVVRGRQQEKN 119 Query: 1038 XXXXXXXXXXXRGRDMFKVE-----CYKCKRKGHYKKDCPELKDNHNK-QXXXXXXXXXX 877 R K C CKR GH +C +L+D + + Sbjct: 120 TNNKSRDKSSSIYRGRSKSRGRYKSCKYCKRDGHDISECWKLQDKDKRTRKYIPKGKKEE 179 Query: 876 XXXXXXXEDILIGGDLAQALTAGSHDHLYDGWMLDTGALYHLCPVREWFTTYREVKGSSV 697 D +L A + D W+LDT YH+CP R+WF TY V+G +V Sbjct: 180 EGKAAVVTDEKSDAELLVAYAGCAQTS--DQWILDTACTYHMCPNRDWFATYEAVQGGTV 237 Query: 696 MMGDSRPCKTMGVGTVKFQLTDGSCRQLIEVCHIPALSKGLISLGMLEAQGYRYVGENGY 517 +MGD PC+ G+GTV+ ++ DG R L++V HIP L + LISL L+ +GY+Y G +G Sbjct: 238 LMGDDTPCEVAGIGTVQIKMFDGCIRTLLDVRHIPNLKRSLISLCTLDRKGYKYSGGDGI 297 Query: 516 CNVYFGDRLLLSA-VRHANLY--QGSVVEGGAMVSTVVDEKSLARA-QLWHMRLGHVGVS 349 V G +++ A +++ANLY +G+ + G V+ V D S + A LWHMRLGH+ Sbjct: 298 LKVTKGSLVVMKADIKYANLYHLRGTTILGN--VAAVSDSLSNSDATNLWHMRLGHMSEI 355 Query: 348 ELRTLSKRGLLGGDKMAKLDFCEHCVYGKQCRVSFGDGIH 229 L LSKRGLL G + KL FCEHC++GK RV F H Sbjct: 356 GLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTH 395 >gb|AAL31093.1|AC091749_22 putative retrotransposon-related protein [Oryza sativa Japonica Group] gi|22655747|gb|AAN04164.1| Putative retrotransposon protein [Oryza sativa Japonica Group] gi|31431214|gb|AAP53029.1| retrotransposon protein, putative, Ty1-copia subclass, expressed [Oryza sativa Japonica Group] Length = 1229 Score = 201 bits (511), Expect = 1e-48 Identities = 140/452 (30%), Positives = 224/452 (49%), Gaps = 14/452 (3%) Frame = -3 Query: 1542 EKVTED*AEK*NKMDQKACSTIHLCLSWNVAYNFADEMTAKGI*DKLQALYLQNDQMSVT 1363 +K TE AE+ K D+KA S I L LS ++ E TA + KL+++ + D S Sbjct: 41 KKTTEWTAEEKRK-DRKALSLIQLHLSNDILQKVLQEKTAAELWFKLESICMSKDLTSKM 99 Query: 1362 YLQKKLFTFRLQPGRLMTDHINEFECLYSDCISLGAKFEDSQKALFLLIFLLPKWEPFVD 1183 +++ KLF+ +LQ + +HI+ F+ + +D +S+ +F+D L LL L + F D Sbjct: 100 HIKMKLFSHKLQESGSVLNHISVFKEIIADLVSMEVQFDDEDLGLLLLCSLPSLYANFRD 159 Query: 1182 QMTTLKKEKFVYSDIVQAVLAKASRKGTLNEEVQADDLSVTWGXXXXXXXXXXXXXXXXR 1003 + L +++ +++ +A+ + KG VQ+D S Sbjct: 160 TIL-LSRDELTLAEVYEALQNREKMKGM----VQSDASSSKGKALQVRGRSEQRTYNDSN 214 Query: 1002 GRDMF----------KVECYKCKRKGHYKKDCPELKDNHNKQXXXXXXXXXXXXXXXXXE 853 RD K C CK+K H+ ++C +L+ N K+ Sbjct: 215 DRDKSQSRGRSKSRGKKFCKYCKKKNHFIEECWKLQ-NKEKRKSDGKASVVTSAENSDSA 273 Query: 852 DILIGGDLAQALTAGSHDHLYDGWMLDTGALYHLCPVREWFTTYREVK-GSSVMMGDSRP 676 D L+ A SHD W+LDT L+ +C R+WF++++ V+ G V MGD+ P Sbjct: 274 DCLV----FFAGCVASHDE----WILDTACLFLICINRDWFSSHKSVQNGDVVRMGDNNP 325 Query: 675 CKTMGVGTVKFQLTDGSCRQLIEVCHIPALSKGLISLGMLEAQGYRYVGENGYCNVYFGD 496 + MG+G+V+ + DG R L +V HIP +++ LISL L+A+GY+Y G G V G Sbjct: 326 REIMGIGSVQIKTHDGMTRTLKDVRHIPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGS 385 Query: 495 RL-LLSAVRHANLY--QGSVVEGGAMVSTVVDEKSLARAQLWHMRLGHVGVSELRTLSKR 325 + ++ + ANLY +GS + G ++ + V + ++ LWHMRLGH+ + L KR Sbjct: 386 LVYMIGDMNSANLYVLRGSTLHG-SLTAAAVSKDEPSKTNLWHMRLGHMSELGMAELMKR 444 Query: 324 GLLGGDKMAKLDFCEHCVYGKQCRVSFGDGIH 229 LL G + FCEHCV+GK RV F +H Sbjct: 445 NLLDGCTQGNMKFCEHCVFGKHKRVKFNTSVH 476 >gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula] Length = 1305 Score = 199 bits (506), Expect = 5e-48 Identities = 139/481 (28%), Positives = 230/481 (47%), Gaps = 9/481 (1%) Frame = -3 Query: 1659 FDILRCNGRNNFKAWQMDCKXXXXXXXXXXXXXDKNKPSEKVTED*AEK*NKMDQKACST 1480 F+I + NGR F W++ K +P++ +T+ EK +MD A + Sbjct: 5 FEIEKFNGRK-FSLWKL--KIRAILRKDNCLDAIDGRPAD-ITD---EKWKEMDDNAVAN 57 Query: 1479 IHLCLSWNVAYNFADEMTAKGI*DKLQALYLQNDQMSVTYLQKKLFTFRLQPGRLMTDHI 1300 +HL ++ +V + A++ TAK I D L LY + +L+++L+T R+ +TDHI Sbjct: 58 LHLAMADSVLSSIAEKKTAKEIWDTLIKLYEVKSLHNRIFLKRRLYTLRMGESTSVTDHI 117 Query: 1299 NEFECLYSDCISLGAKFEDSQKALFLLIFLLPKWEPFVDQMTTLK-KEKFVYSDIVQAVL 1123 N L+S + K ++++A LL L ++ + +T + + D+ A+L Sbjct: 118 NTLNTLFSQLTASDFKIAENERAELLLQSLPDSYDQLIINITNNNIADTLHFDDVAGAIL 177 Query: 1122 AKASRKGTLNEEV----QADDLSVTWGXXXXXXXXXXXXXXXXRGRDMFKVECYKCKRKG 955 + SR+ E QA+ L++T G + R ++CY C KG Sbjct: 178 EEESRRKNKEERSESSKQAEALTMTRGRSTERGPSGSQNHGRSKSRRKNNIKCYGCGMKG 237 Query: 954 HYKKDCPELKDNHNKQXXXXXXXXXXXXXXXXXEDILIGGDLAQALTAGSHDHLYDGWML 775 H KK+C K N K +IL A ++ L D W++ Sbjct: 238 HVKKECWNNKKNGEKNSEATTSQGCVASTSDDG-EILYS---EAATSSEGERQLNDVWIM 293 Query: 774 DTGALYHLCPVREWFTTYREVKGSSVMMGDSRPCKTMGVGTVKFQLTDGSCRQLIEVCHI 595 D+GA +H+ P R+WF +Y + SV MG+ + GVGT++ ++ DG+ R++ V H+ Sbjct: 294 DSGATWHMTPHRDWFYSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQGVRHV 353 Query: 594 PALSKGLISLGMLEAQGYRYVGENGYCNVYFGDRLLLSAVR-HANLYQ---GSVVEGGAM 427 L K L+S+G L+ G + E+G V G+ +++ A + +NLY ++ E A Sbjct: 354 KGLKKNLLSVGQLDDLGCKIHSESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQEADAS 413 Query: 426 VSTVVDEKSLARAQLWHMRLGHVGVSELRTLSKRGLLGGDKMAKLDFCEHCVYGKQCRVS 247 V+ E++ +WH RLGH+ L+ L +R LL G K L FCEHCV KQ R+ Sbjct: 414 VAAASQEET---TMMWHQRLGHMSERGLKVLVERNLLHGLKTVNLPFCEHCVISKQHRLK 470 Query: 246 F 244 F Sbjct: 471 F 471 >gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein [Oryza sativa Japonica Group] gi|108708632|gb|ABF96427.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group] Length = 1326 Score = 199 bits (506), Expect = 5e-48 Identities = 135/448 (30%), Positives = 220/448 (49%), Gaps = 10/448 (2%) Frame = -3 Query: 1542 EKVTED*AEK*NKMDQKACSTIHLCLSWNVAYNFADEMTAKGI*DKLQALYLQNDQMSVT 1363 +K TE AE+ K D+KA I L LS ++ E TA + KL+++ + D S Sbjct: 44 KKSTEWTAEEKRK-DRKALLLIQLHLSNDILQEVLQEKTAAELWLKLESICMSKDLTSKM 102 Query: 1362 YLQKKLFTFRLQPGRLMTDHINEFECLYSDCISLGAKFEDSQKALFLLIFLLPKWEPFVD 1183 +++ KLF+ +LQ + +HI+ F+ + D +S+ +F+D L LL L + F D Sbjct: 103 HIKMKLFSHKLQESGSVLNHISVFKEIVVDLVSIEVQFDDEDLGLLLLCSLPSSYANFRD 162 Query: 1182 QMTTLKKEKFVYSDIVQAVLAKASRKGTLNEEVQAD--DLSVTWGXXXXXXXXXXXXXXX 1009 + L +++ +++ +A+ + KG + + + + G Sbjct: 163 TIL-LSRDELTLAEVYEALQNREKMKGMVQSDASSSKGEALQVRGRSEQRTYNDSSDRDK 221 Query: 1008 XRGRDMFKVE----CYKCKRKGHYKKDCPELKDNHNKQXXXXXXXXXXXXXXXXXEDILI 841 + R K C CK+K H+ ++C +L+ N K+ D L+ Sbjct: 222 SQSRGRSKSRGKKFCKYCKKKNHFIEECWKLQ-NKEKRKSDGKASVVTSAENSDSGDCLV 280 Query: 840 GGDLAQALTAGSHDHLYDGWMLDTGALYHLCPVREWFTTYREVK-GSSVMMGDSRPCKTM 664 A SHD W+LDT +H+C R+WF++Y+ V+ G V MGD P + + Sbjct: 281 ----VFAGCVASHDE----WILDTACSFHICINRDWFSSYKSVQNGDVVRMGDDNPREIV 332 Query: 663 GVGTVKFQLTDGSCRQLIEVCHIPALSKGLISLGMLEAQGYRYVGENGYCNVYFGDRL-L 487 G+G+V+ + DG R L +V HIP +++ LISL L+A+GY+Y G V G + + Sbjct: 333 GIGSVQIKTHDGMTRTLKDVRHIPGMARNLISLSTLDAEGYKYSSSGGVVKVSKGSLVYM 392 Query: 486 LSAVRHANLY--QGSVVEGGAMVSTVVDEKSLARAQLWHMRLGHVGVSELRTLSKRGLLG 313 + + ANLY +GS + G + V ++ + + LWHMRLGH+ + L KR LL Sbjct: 393 IGDMNSANLYVLRGSTLHGSVTAAAVSKDEPI-KTNLWHMRLGHMSELGMAELMKRNLLD 451 Query: 312 GDKMAKLDFCEHCVYGKQCRVSFGDGIH 229 G K+ FCEHCV+GK RV F +H Sbjct: 452 GCTQGKMKFCEHCVFGKHKRVKFNTSVH 479 >gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula] Length = 1305 Score = 197 bits (501), Expect = 2e-47 Identities = 137/481 (28%), Positives = 228/481 (47%), Gaps = 9/481 (1%) Frame = -3 Query: 1659 FDILRCNGRNNFKAWQMDCKXXXXXXXXXXXXXDKNKPSEKVTED*AEK*NKMDQKACST 1480 F+I + NGRN F W++ + + +T+ EK +MD A + Sbjct: 5 FEIEKFNGRN-FSLWKLKIRAILRKDNCLDAIDGR---LADITD---EKWKEMDDNAVAN 57 Query: 1479 IHLCLSWNVAYNFADEMTAKGI*DKLQALYLQNDQMSVTYLQKKLFTFRLQPGRLMTDHI 1300 +HL ++ +V + A++ TAK I D L LY + +L+++L+T ++ +TDHI Sbjct: 58 LHLAMADSVLSSIAEKKTAKEIWDTLIKLYEVKSLHNRIFLKRRLYTLQMGESTSVTDHI 117 Query: 1299 NEFECLYSDCISLGAKFEDSQKALFLLIFLLPKWEPFVDQMTTLK-KEKFVYSDIVQAVL 1123 N L+S + K +++A LL L ++ + +T + + D+ A+L Sbjct: 118 NTLNTLFSQLTASDFKIAKNERAELLLQSLPDSYDQLIINITNNNIADTLHFDDVAGAIL 177 Query: 1122 AKASRKGTLNEEV----QADDLSVTWGXXXXXXXXXXXXXXXXRGRDMFKVECYKCKRKG 955 + SR+ E QA+ L++T G + R ++CY C KG Sbjct: 178 EEESRRKNKEERSESSKQAEALTMTRGRSTERGPSGSQNHGRSKSRRKKNIKCYGCGMKG 237 Query: 954 HYKKDCPELKDNHNKQXXXXXXXXXXXXXXXXXEDILIGGDLAQALTAGSHDHLYDGWML 775 H KK+C +K N K +IL A ++ L D W++ Sbjct: 238 HVKKECWNIKKNGEKNSEASTSQGCVASTSDDG-EILYS---EAATSSKGERRLNDVWIM 293 Query: 774 DTGALYHLCPVREWFTTYREVKGSSVMMGDSRPCKTMGVGTVKFQLTDGSCRQLIEVCHI 595 D+GA +H+ P R+WF +Y + SV MG+ + GVGT++ ++ DG+ R++ V H+ Sbjct: 294 DSGATWHMTPHRDWFYSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQGVRHV 353 Query: 594 PALSKGLISLGMLEAQGYRYVGENGYCNVYFGDRLLLSAVR-HANLYQ---GSVVEGGAM 427 L K L+S+G L+ G + E+G V G+ +++ A + +NLY ++ E A Sbjct: 354 KGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQEADAS 413 Query: 426 VSTVVDEKSLARAQLWHMRLGHVGVSELRTLSKRGLLGGDKMAKLDFCEHCVYGKQCRVS 247 V+ E++ +WH RLGH+ L+ L +R LL G K L FCEHCV KQ R+ Sbjct: 414 VAAASQEET---TMMWHQRLGHMSERGLKVLVERNLLHGLKTVNLPFCEHCVMSKQHRLK 470 Query: 246 F 244 F Sbjct: 471 F 471