BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia22_contig00012500
         (1851 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003634352.1| PREDICTED: RNA pseudourine synthase 2, chlor...   540   e-150
ref|XP_004238386.1| PREDICTED: RNA pseudourine synthase 2, chlor...   511   e-142
ref|XP_006473714.1| PREDICTED: RNA pseudouridine synthase 2, chl...   504   e-140
ref|XP_006342081.1| PREDICTED: RNA pseudouridine synthase 2, chl...   503   e-139
ref|XP_002301949.1| pseudouridine synthase family protein [Popul...   503   e-139
ref|XP_007017900.1| Pseudouridine synthase family protein isofor...   501   e-139
ref|XP_004161095.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudour...   501   e-139
ref|XP_004143077.1| PREDICTED: RNA pseudourine synthase 2, chlor...   500   e-138
emb|CAN66750.1| hypothetical protein VITISV_034413 [Vitis vinifera]   498   e-138
ref|XP_003523282.1| PREDICTED: RNA pseudouridine synthase 2, chl...   496   e-137
ref|XP_007136120.1| hypothetical protein PHAVU_009G019500g [Phas...   494   e-137
ref|XP_007136119.1| hypothetical protein PHAVU_009G019500g [Phas...   486   e-134
ref|XP_004500918.1| PREDICTED: RNA pseudourine synthase 2, chlor...   485   e-134
ref|XP_006828851.1| hypothetical protein AMTR_s00001p00157430 [A...   485   e-134
ref|XP_006390244.1| hypothetical protein EUTSA_v10018588mg [Eutr...   483   e-133
ref|NP_974151.1| RNA pseudourine synthase 2 [Arabidopsis thalian...   473   e-130
ref|XP_006302277.1| hypothetical protein CARUB_v10020321mg [Caps...   473   e-130
ref|XP_003603819.1| RNA pseudourine synthase [Medicago truncatul...   472   e-130
ref|XP_007017901.1| Pseudouridine synthase family protein isofor...   471   e-130
gb|EYU17563.1| hypothetical protein MIMGU_mgv1a006781mg [Mimulus...   471   e-130

>ref|XP_003634352.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Vitis
            vinifera] gi|302141717|emb|CBI18920.3| unnamed protein
            product [Vitis vinifera]
          Length = 433

 Score =  540 bits (1390), Expect = e-150
 Identities = 287/431 (66%), Positives = 328/431 (76%), Gaps = 3/431 (0%)
 Frame = -1

Query: 1779 SSSFFFFPKIKNPRISSRVFRIIVNXXXXXXXXXXXXXXXXEPLSIQRSNYAGVRLQETV 1600
            S S   FP+  NP+  SRVFRI+                    +S +R+NYAGVRL+ETV
Sbjct: 17   SQSALLFPR--NPKSCSRVFRIL-------RACSNSTDEPLVSVSGRRTNYAGVRLEETV 67

Query: 1599 ---QKGSEKXXXXXXXXXXXSCVSRARVQSSIRSGLVSVNGRVIDKVSHVIKVGDKVNCT 1429
                  S K             +SRARVQSSIRSGLVSVN R++DKVSHVI+ GDKVNCT
Sbjct: 68   VDVNSDSGKLRLDSWISSRIIGISRARVQSSIRSGLVSVNDRIVDKVSHVIRAGDKVNCT 127

Query: 1428 ISELQPLRAEPEDIPLNIVYEDTHVLVVNKPAHMVVHPAPGNANGTLVNAILHHCSLPTV 1249
            ISELQPLRAEPEDIPL+IVYED HVLVVNKPAHMVVHPAPGNA+GTLVN ILHHCSLPTV
Sbjct: 128  ISELQPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNASGTLVNGILHHCSLPTV 187

Query: 1248 ALSNGEILSELEDDSDNEISNFSLDQSSREGLSSRICGDSIRPGIVHRLDKGTSGLLVIA 1069
            AL N +  SE +D SD+E ++F+  Q+         C  +IRPGIVHRLDKGTSGLLV+A
Sbjct: 188  ALPNRD--SEEDDISDDEFNSFAAGQNCGT------CETNIRPGIVHRLDKGTSGLLVVA 239

Query: 1068 KDDHSHAHLSEQFKQRTIHRVYISLTAGVPSPMAGRIEVPIGRDLNNRIRMVAVPGPSNC 889
            KD+HSHAHLSEQFK  +IHRVYISLT+GVP+P++GR+E+P+GRD NNRIRM AVPGPSN 
Sbjct: 240  KDEHSHAHLSEQFKLHSIHRVYISLTSGVPTPLSGRVEIPVGRDPNNRIRMTAVPGPSNS 299

Query: 888  RQVXXXXXXXXXYKVIEVLGGGGSALVEWRLETGRTHQIRAHAKHLGIPLLGDEVYGGTK 709
             Q          YKVIE+L  GGSALVEWRLETGRTHQIRAHAK+LGIPLLGDEVYGGTK
Sbjct: 300  GQARHAASR---YKVIEILAAGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTK 356

Query: 708  SMALSLLQCRTPASCHGNLSQLVSKLDRPCLHALALGFKHPHTGENTQFSCPPPADFAEI 529
            +MALSLL+ R P+S HG L+QLVS+LDRPCLHA+ALGF HP TG+N  FSC PP DFAEI
Sbjct: 357  NMALSLLRPRIPSSHHGQLAQLVSRLDRPCLHAVALGFNHPKTGKNVHFSCQPPEDFAEI 416

Query: 528  LSLLRNINTEK 496
            LS LR I+TEK
Sbjct: 417  LSWLRKISTEK 427


>ref|XP_004238386.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Solanum
            lycopersicum]
          Length = 436

 Score =  511 bits (1316), Expect = e-142
 Identities = 271/434 (62%), Positives = 320/434 (73%)
 Frame = -1

Query: 1782 NSSSFFFFPKIKNPRISSRVFRIIVNXXXXXXXXXXXXXXXXEPLSIQRSNYAGVRLQET 1603
            N++SF   P+   P   SRV   I                  E +  +RSNY+GV+L+ET
Sbjct: 5    NTTSFSLLPQNPKPISLSRVSSFICRAFTKFPGDSDSDDSPDE-IPGRRSNYSGVKLEET 63

Query: 1602 VQKGSEKXXXXXXXXXXXSCVSRARVQSSIRSGLVSVNGRVIDKVSHVIKVGDKVNCTIS 1423
            V   + K             VSRARVQSSIRSGLVSVNGRV DKVSH++K GDKV+CTI+
Sbjct: 64   VDSKTGKLRLDSWVSSRIDGVSRARVQSSIRSGLVSVNGRVTDKVSHMVKGGDKVDCTIA 123

Query: 1422 ELQPLRAEPEDIPLNIVYEDTHVLVVNKPAHMVVHPAPGNANGTLVNAILHHCSLPTVAL 1243
            +L+PLRAEPEDIPL+IVYED HVLVVNKPAHMVVHPAPGNA GTLV+ ILHHCSLPTV+ 
Sbjct: 124  DLKPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVSGILHHCSLPTVSF 183

Query: 1242 SNGEILSELEDDSDNEISNFSLDQSSREGLSSRICGDSIRPGIVHRLDKGTSGLLVIAKD 1063
               E+LS+ ED SD+E++ FS ++S     SS +C  S+RPGIVHRLDKGTSGLLV+AK+
Sbjct: 184  PGEEVLSDGEDASDDELNIFSPNRSPNYDDSSVMCESSVRPGIVHRLDKGTSGLLVVAKN 243

Query: 1062 DHSHAHLSEQFKQRTIHRVYISLTAGVPSPMAGRIEVPIGRDLNNRIRMVAVPGPSNCRQ 883
            +HS A L+EQFK+ TI RVY+S+T GVP+ +AGR+++PIGRD NNRIRM A+PG     +
Sbjct: 244  EHSLADLAEQFKKHTIKRVYVSITCGVPASVAGRVDIPIGRDSNNRIRMAAIPGTPKSGK 303

Query: 882  VXXXXXXXXXYKVIEVLGGGGSALVEWRLETGRTHQIRAHAKHLGIPLLGDEVYGGTKSM 703
                      YKVIE L GGGSALVEWRLETGRTHQIRAHAKHLGIPL+GDEVYGGTK+M
Sbjct: 304  ---SRHAVSRYKVIEKLAGGGSALVEWRLETGRTHQIRAHAKHLGIPLMGDEVYGGTKNM 360

Query: 702  ALSLLQCRTPASCHGNLSQLVSKLDRPCLHALALGFKHPHTGENTQFSCPPPADFAEILS 523
            ALSLLQ +TP   HG LSQLVS++DRPCLHAL LGF+HP TGEN  F+  PP DFAEILS
Sbjct: 361  ALSLLQPKTPPMFHGELSQLVSQIDRPCLHALTLGFRHPFTGENIHFTRLPPPDFAEILS 420

Query: 522  LLRNINTEKPSFKN 481
             LR I TEK +  N
Sbjct: 421  ELRAIKTEKVTHPN 434


>ref|XP_006473714.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like [Citrus
            sinensis]
          Length = 421

 Score =  504 bits (1299), Expect = e-140
 Identities = 266/382 (69%), Positives = 293/382 (76%)
 Frame = -1

Query: 1635 SNYAGVRLQETVQKGSEKXXXXXXXXXXXSCVSRARVQSSIRSGLVSVNGRVIDKVSHVI 1456
            +NYAGV+L+ETV   + K             +SRARVQSSIRSGLVS+NG+V+ KVSH +
Sbjct: 53   ANYAGVQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNV 112

Query: 1455 KVGDKVNCTISELQPLRAEPEDIPLNIVYEDTHVLVVNKPAHMVVHPAPGNANGTLVNAI 1276
            K GD VNCTISELQPLRAE EDIPL+IVYED +VLVVNKPAHMVVHPAPGNA GTLVN I
Sbjct: 113  KGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGI 172

Query: 1275 LHHCSLPTVALSNGEILSELEDDSDNEISNFSLDQSSREGLSSRICGDSIRPGIVHRLDK 1096
            LHHCSLPT+A SN E  S+ ED SD+            E  SS I G SIRPGIVHRLDK
Sbjct: 173  LHHCSLPTLASSNQEAFSDAEDISDD------------EEFSSSISGASIRPGIVHRLDK 220

Query: 1095 GTSGLLVIAKDDHSHAHLSEQFKQRTIHRVYISLTAGVPSPMAGRIEVPIGRDLNNRIRM 916
            GTSGLLV+AKD+HSHAHLSEQFK  TI RVYISLT+GVPS  +GRIEVPI RD NNRIRM
Sbjct: 221  GTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRM 280

Query: 915  VAVPGPSNCRQVXXXXXXXXXYKVIEVLGGGGSALVEWRLETGRTHQIRAHAKHLGIPLL 736
             A+PG +   Q          YKVIE+L GGGSALVEWRLETGRTHQIRAHAK++GIPLL
Sbjct: 281  AAIPGSNKHGQA---RHAASRYKVIEILAGGGSALVEWRLETGRTHQIRAHAKYMGIPLL 337

Query: 735  GDEVYGGTKSMALSLLQCRTPASCHGNLSQLVSKLDRPCLHALALGFKHPHTGENTQFSC 556
            GDEVYGGTK+MA SLLQ RT    HG + +LVS L RPCLHA+ALGF HPHT E  QFSC
Sbjct: 338  GDEVYGGTKNMAKSLLQPRTAPGSHGKVLKLVSGLQRPCLHAVALGFTHPHTREKIQFSC 397

Query: 555  PPPADFAEILSLLRNINTEKPS 490
            PPPADFAEILS LR I TEK S
Sbjct: 398  PPPADFAEILSQLREIGTEKLS 419


>ref|XP_006342081.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like [Solanum
            tuberosum]
          Length = 431

 Score =  503 bits (1294), Expect = e-139
 Identities = 266/429 (62%), Positives = 318/429 (74%)
 Frame = -1

Query: 1782 NSSSFFFFPKIKNPRISSRVFRIIVNXXXXXXXXXXXXXXXXEPLSIQRSNYAGVRLQET 1603
            N++SF   P+   P   SRV   I                  E +  +RSNY+GV+L+ET
Sbjct: 5    NTTSFSLLPQNPKPFSLSRVSSFICRAFTKFPGDSDSDDSPDE-IPGRRSNYSGVKLEET 63

Query: 1602 VQKGSEKXXXXXXXXXXXSCVSRARVQSSIRSGLVSVNGRVIDKVSHVIKVGDKVNCTIS 1423
            V   + K             VSRARVQSSIRSGLVSVNGRV DKVSH++K GDKV+CTI+
Sbjct: 64   VDGKTGKLRLDSWVSSRIDGVSRARVQSSIRSGLVSVNGRVTDKVSHMVKGGDKVDCTIA 123

Query: 1422 ELQPLRAEPEDIPLNIVYEDTHVLVVNKPAHMVVHPAPGNANGTLVNAILHHCSLPTVAL 1243
            +L+PLRAEPEDIPL+IV+ED HVLVVNKPAHMVVHPAPGNA GTLV+ ILHHCSLPT++ 
Sbjct: 124  DLKPLRAEPEDIPLDIVFEDEHVLVVNKPAHMVVHPAPGNATGTLVSGILHHCSLPTISF 183

Query: 1242 SNGEILSELEDDSDNEISNFSLDQSSREGLSSRICGDSIRPGIVHRLDKGTSGLLVIAKD 1063
               E+LS+ ED SD+E++ FS ++S     SS +C  S+RPGIVHRLDKGTSGLLV+AK+
Sbjct: 184  LGEEVLSDAEDASDDELNVFSGNRSPNYDDSSVMCESSVRPGIVHRLDKGTSGLLVVAKN 243

Query: 1062 DHSHAHLSEQFKQRTIHRVYISLTAGVPSPMAGRIEVPIGRDLNNRIRMVAVPGPSNCRQ 883
            ++S A L+EQFK+ TI RVY+S+T GVP+ +AGR+++PIGRD NNRIRM A+PG     +
Sbjct: 244  ENSLASLAEQFKKHTIKRVYVSITCGVPASVAGRVDIPIGRDSNNRIRMAAIPGTPKSGK 303

Query: 882  VXXXXXXXXXYKVIEVLGGGGSALVEWRLETGRTHQIRAHAKHLGIPLLGDEVYGGTKSM 703
                      YKVIE L  GGSALVEWRLETGRTHQIRAHAK+LGIPL+GDEVYGGTK+M
Sbjct: 304  ---SRHAVSRYKVIEKLARGGSALVEWRLETGRTHQIRAHAKYLGIPLMGDEVYGGTKNM 360

Query: 702  ALSLLQCRTPASCHGNLSQLVSKLDRPCLHALALGFKHPHTGENTQFSCPPPADFAEILS 523
            ALSLLQ +TP   HG LSQLVS++DRPCLHAL LGF+HP TGEN  F+  PP DFAEILS
Sbjct: 361  ALSLLQPKTPPMFHGKLSQLVSQIDRPCLHALTLGFRHPFTGENIHFTRLPPPDFAEILS 420

Query: 522  LLRNINTEK 496
             LR INTEK
Sbjct: 421  YLRAINTEK 429


>ref|XP_002301949.1| pseudouridine synthase family protein [Populus trichocarpa]
            gi|222843675|gb|EEE81222.1| pseudouridine synthase family
            protein [Populus trichocarpa]
          Length = 444

 Score =  503 bits (1294), Expect = e-139
 Identities = 264/386 (68%), Positives = 299/386 (77%)
 Frame = -1

Query: 1641 QRSNYAGVRLQETVQKGSEKXXXXXXXXXXXSCVSRARVQSSIRSGLVSVNGRVIDKVSH 1462
            QR NY+GV+L+E+V   S K           S +SRARVQSSI+SGLVSVNG+VIDKVSH
Sbjct: 74   QRINYSGVKLEESVDSKSGKSRLDSWISSRISGISRARVQSSIKSGLVSVNGKVIDKVSH 133

Query: 1461 VIKVGDKVNCTISELQPLRAEPEDIPLNIVYEDTHVLVVNKPAHMVVHPAPGNANGTLVN 1282
             +K GDKVNC ISELQPLRAEPE+IPL+IVYED +VLVVNKPAHMVVHPAPGNA GTLVN
Sbjct: 134  NVKAGDKVNCVISELQPLRAEPENIPLDIVYEDENVLVVNKPAHMVVHPAPGNATGTLVN 193

Query: 1281 AILHHCSLPTVALSNGEILSELEDDSDNEISNFSLDQSSREGLSSRICGDSIRPGIVHRL 1102
             ILHHCSLPTV  S+ E+LS  ED SD++           EGL S     S+RPGIVHRL
Sbjct: 194  GILHHCSLPTV--SSQEVLSGAEDVSDDD----------DEGLCSSSYAASVRPGIVHRL 241

Query: 1101 DKGTSGLLVIAKDDHSHAHLSEQFKQRTIHRVYISLTAGVPSPMAGRIEVPIGRDLNNRI 922
            DKGTSGLLV+AKD+HSHAHLSEQFK  TI RVY+SLT GVP+PMAGRI+VPIGRD++NRI
Sbjct: 242  DKGTSGLLVVAKDEHSHAHLSEQFKLHTIKRVYVSLTCGVPAPMAGRIDVPIGRDVSNRI 301

Query: 921  RMVAVPGPSNCRQVXXXXXXXXXYKVIEVLGGGGSALVEWRLETGRTHQIRAHAKHLGIP 742
            RM A+  P+              YKVIE+L GGGSALVEWRLETGRTHQIRAHAK++GIP
Sbjct: 302  RMAAIVEPNR----GQARHAASRYKVIEILAGGGSALVEWRLETGRTHQIRAHAKYIGIP 357

Query: 741  LLGDEVYGGTKSMALSLLQCRTPASCHGNLSQLVSKLDRPCLHALALGFKHPHTGENTQF 562
            LLGDEVYGGT++MALSLL+ RT  SCH  LS  +S L+RPCLHALALGF HP TG+   F
Sbjct: 358  LLGDEVYGGTQNMALSLLRSRTQPSCHRQLSLSLSGLERPCLHALALGFTHPCTGKEIHF 417

Query: 561  SCPPPADFAEILSLLRNINTEKPSFK 484
            SCPPP DF EILS LR + TEK SFK
Sbjct: 418  SCPPPPDFTEILSQLREMGTEKLSFK 443


>ref|XP_007017900.1| Pseudouridine synthase family protein isoform 1 [Theobroma cacao]
            gi|508723228|gb|EOY15125.1| Pseudouridine synthase family
            protein isoform 1 [Theobroma cacao]
          Length = 433

 Score =  501 bits (1289), Expect = e-139
 Identities = 261/386 (67%), Positives = 303/386 (78%), Gaps = 1/386 (0%)
 Frame = -1

Query: 1638 RSNYAGVRLQETVQKGSE-KXXXXXXXXXXXSCVSRARVQSSIRSGLVSVNGRVIDKVSH 1462
            R++Y GV+L+ETV    + K             +SRARVQSSI+SGLV+VNGRV+DKVSH
Sbjct: 60   RTSYTGVQLEETVDGTKQGKLRLDSWISSRIQGISRARVQSSIKSGLVTVNGRVVDKVSH 119

Query: 1461 VIKVGDKVNCTISELQPLRAEPEDIPLNIVYEDTHVLVVNKPAHMVVHPAPGNANGTLVN 1282
             ++ GDKVNC ISELQPLRAEPEDIPL+IVYED HVLVVNKP HMVVHPAPGNA GTLVN
Sbjct: 120  GLRHGDKVNCVISELQPLRAEPEDIPLDIVYEDDHVLVVNKPPHMVVHPAPGNATGTLVN 179

Query: 1281 AILHHCSLPTVALSNGEILSELEDDSDNEISNFSLDQSSREGLSSRICGDSIRPGIVHRL 1102
             ILHHCSLPTVALS  E+LS+ ED SD+       D+    G S+     S+RPGIVHRL
Sbjct: 180  GILHHCSLPTVALSEKEVLSDTEDVSDD-------DEGFCYGASA---AASVRPGIVHRL 229

Query: 1101 DKGTSGLLVIAKDDHSHAHLSEQFKQRTIHRVYISLTAGVPSPMAGRIEVPIGRDLNNRI 922
            DKGTSGLLV+AKD+HSH+HLSEQFKQ TI RVYISLT GVPSP AGR+++ IGRD NNR+
Sbjct: 230  DKGTSGLLVVAKDEHSHSHLSEQFKQHTIQRVYISLTCGVPSPSAGRVDISIGRDSNNRV 289

Query: 921  RMVAVPGPSNCRQVXXXXXXXXXYKVIEVLGGGGSALVEWRLETGRTHQIRAHAKHLGIP 742
            RM+AVPG ++  +          YKVIEVL GGGSAL++WRLETGRTHQIRAHAK++GIP
Sbjct: 290  RMIAVPGLNHHGRA---RHAASRYKVIEVLAGGGSALIQWRLETGRTHQIRAHAKYMGIP 346

Query: 741  LLGDEVYGGTKSMALSLLQCRTPASCHGNLSQLVSKLDRPCLHALALGFKHPHTGENTQF 562
            LLGDEVYGGTKSMALSLL+ RTP + +  LS+LVS+L+RP LHAL LGF+HPH+ E   F
Sbjct: 347  LLGDEVYGGTKSMALSLLRPRTPPNYNDQLSRLVSRLERPYLHALVLGFEHPHSREMMHF 406

Query: 561  SCPPPADFAEILSLLRNINTEKPSFK 484
            SC PP DFAEILS LR I TEKP+FK
Sbjct: 407  SCQPPPDFAEILSDLRKIGTEKPTFK 432


>ref|XP_004161095.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudourine synthase 2,
            chloroplastic-like [Cucumis sativus]
          Length = 452

 Score =  501 bits (1289), Expect = e-139
 Identities = 269/424 (63%), Positives = 308/424 (72%)
 Frame = -1

Query: 1767 FFFPKIKNPRISSRVFRIIVNXXXXXXXXXXXXXXXXEPLSIQRSNYAGVRLQETVQKGS 1588
            FFFP  +  RI S V RI  N                   S + +NYAG RL+ETV    
Sbjct: 19   FFFPPNRR-RIGSNVLRISSNFSTRCSSDYDEYSEAQ---SERIANYAGTRLEETVDVNP 74

Query: 1587 EKXXXXXXXXXXXSCVSRARVQSSIRSGLVSVNGRVIDKVSHVIKVGDKVNCTISELQPL 1408
             K           + +SRARVQSSIR+GLVSVNGRVIDKVSH +K GD +NCTISELQPL
Sbjct: 75   GKVRLDSWISCRINGISRARVQSSIRAGLVSVNGRVIDKVSHNVKAGDVINCTISELQPL 134

Query: 1407 RAEPEDIPLNIVYEDTHVLVVNKPAHMVVHPAPGNANGTLVNAILHHCSLPTVALSNGEI 1228
            RAEPEDI L+IVYED HVLVVNKPAHMVVHPAPGNA GTLVNAIL+HCSLP VA S G  
Sbjct: 135  RAEPEDIDLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILNHCSLPMVATSTG-- 192

Query: 1227 LSELEDDSDNEISNFSLDQSSREGLSSRICGDSIRPGIVHRLDKGTSGLLVIAKDDHSHA 1048
                E++SD+++S+   D+ S  G+ SR+    IRPGIVHRLDKGTSGLLV+AKD+HSHA
Sbjct: 193  ----ENESDSDVSD---DEFSSIGVFSRVSEAPIRPGIVHRLDKGTSGLLVVAKDEHSHA 245

Query: 1047 HLSEQFKQRTIHRVYISLTAGVPSPMAGRIEVPIGRDLNNRIRMVAVPGPSNCRQVXXXX 868
            HLS QFKQ +I RVYISLT GVP   AGRIE+PI RD NNRIRM A+ G +N        
Sbjct: 246  HLSAQFKQHSIERVYISLTCGVPPSTAGRIEMPICRDPNNRIRMTAIDGTNN----PHAK 301

Query: 867  XXXXXYKVIEVLGGGGSALVEWRLETGRTHQIRAHAKHLGIPLLGDEVYGGTKSMALSLL 688
                 Y V+E+L  GGS+LVEWRLETGRTHQIRAHAK++GIPLLGDEVYGGTKSMA+SLL
Sbjct: 302  YAASRYNVMEILAQGGSSLVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKSMAMSLL 361

Query: 687  QCRTPASCHGNLSQLVSKLDRPCLHALALGFKHPHTGENTQFSCPPPADFAEILSLLRNI 508
            + R  ++CHG L QLVS L+RPCLHAL LGF HPHTG+N +FSCPPP DF EILS LR I
Sbjct: 362  RTRASSNCHGQLMQLVSSLERPCLHALTLGFVHPHTGKNIRFSCPPPTDFTEILSQLREI 421

Query: 507  NTEK 496
             T+K
Sbjct: 422  GTQK 425


>ref|XP_004143077.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Cucumis
            sativus]
          Length = 453

 Score =  500 bits (1287), Expect = e-138
 Identities = 269/424 (63%), Positives = 307/424 (72%)
 Frame = -1

Query: 1767 FFFPKIKNPRISSRVFRIIVNXXXXXXXXXXXXXXXXEPLSIQRSNYAGVRLQETVQKGS 1588
            FFFP  +  RI S V RI  N                   S + +NYAG RL+ETV    
Sbjct: 19   FFFPPNRR-RIGSNVLRISSNFSTRCSSDYDEYSEAQ---SERIANYAGTRLEETVDVNP 74

Query: 1587 EKXXXXXXXXXXXSCVSRARVQSSIRSGLVSVNGRVIDKVSHVIKVGDKVNCTISELQPL 1408
             K           + +SRARVQSSIR+GLVSVNGRVIDKVSH +K GD +NCTISELQPL
Sbjct: 75   GKVRLDSWISCRINGISRARVQSSIRAGLVSVNGRVIDKVSHNVKAGDVINCTISELQPL 134

Query: 1407 RAEPEDIPLNIVYEDTHVLVVNKPAHMVVHPAPGNANGTLVNAILHHCSLPTVALSNGEI 1228
            RAEPEDI L+IVYED HVLVVNKPAHMVVHPAPGNA GTLVNAIL+HCSLP VA S G  
Sbjct: 135  RAEPEDIDLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILNHCSLPMVATSTG-- 192

Query: 1227 LSELEDDSDNEISNFSLDQSSREGLSSRICGDSIRPGIVHRLDKGTSGLLVIAKDDHSHA 1048
                E++SD+++S+   D+ S  G+ SR+    IRPGIVHRLDKGTSGLLV+AKD+HSHA
Sbjct: 193  ----ENESDSDVSD---DEFSSIGVFSRVSEAPIRPGIVHRLDKGTSGLLVVAKDEHSHA 245

Query: 1047 HLSEQFKQRTIHRVYISLTAGVPSPMAGRIEVPIGRDLNNRIRMVAVPGPSNCRQVXXXX 868
            HLS QFKQ +I RVYISLT GVP   AGRIE+PI RD NNRIRM A+ G  N        
Sbjct: 246  HLSAQFKQHSIERVYISLTCGVPPSTAGRIEMPICRDPNNRIRMTAIDGTKNNPHA---K 302

Query: 867  XXXXXYKVIEVLGGGGSALVEWRLETGRTHQIRAHAKHLGIPLLGDEVYGGTKSMALSLL 688
                 Y V+E+L  GGS+LVEWRLETGRTHQIRAHAK++GIPLLGDEVYGGTKSMA+SLL
Sbjct: 303  YAASRYNVMEILAQGGSSLVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKSMAMSLL 362

Query: 687  QCRTPASCHGNLSQLVSKLDRPCLHALALGFKHPHTGENTQFSCPPPADFAEILSLLRNI 508
            + R  ++CHG L QLVS L+RPCLHAL LGF HPHTG+N +FSCPPP DF EILS LR I
Sbjct: 363  RTRASSNCHGQLMQLVSSLERPCLHALTLGFVHPHTGKNIRFSCPPPTDFTEILSQLREI 422

Query: 507  NTEK 496
             T+K
Sbjct: 423  GTQK 426


>emb|CAN66750.1| hypothetical protein VITISV_034413 [Vitis vinifera]
          Length = 611

 Score =  498 bits (1281), Expect = e-138
 Identities = 276/460 (60%), Positives = 319/460 (69%), Gaps = 30/460 (6%)
 Frame = -1

Query: 1785 CNSSSFFFFPKIKNPRISSRVFRIIVNXXXXXXXXXXXXXXXXEPLSIQRSNYAGVRLQE 1606
            C  +S   FP+  NP+  SRVFRI+ +                  +S +R+NYAGVRL+E
Sbjct: 144  CAKNSVLLFPR--NPKSCSRVFRILRDCSNSTDEPLVS-------VSSRRTNYAGVRLEE 194

Query: 1605 TV---QKGSEKXXXXXXXXXXXSCVSRARVQSSIRSGLVSVNGRVIDK------------ 1471
            TV      S K             +SRARVQSSIRSGLVSVN R++DK            
Sbjct: 195  TVVDVNSDSGKLRLDSWISSRIIGISRARVQSSIRSGLVSVNDRIVDKAMLVSRKFEVGE 254

Query: 1470 ---------------VSHVIKVGDKVNCTISELQPLRAEPEDIPLNIVYEDTHVLVVNKP 1336
                           VSHVI+ GDKVNCTISELQPLRAEPEDIPL+IVYED HV      
Sbjct: 255  GKKIEEKDPITYSEQVSHVIRAGDKVNCTISELQPLRAEPEDIPLDIVYEDEHV------ 308

Query: 1335 AHMVVHPAPGNANGTLVNAILHHCSLPTVALSNGEILSELEDDSDNEISNFSLDQSSREG 1156
                VHPAPGNA+GTLVN ILHHCSLPTVAL N +  SE +D  D+E ++F+  Q+    
Sbjct: 309  ----VHPAPGNASGTLVNGILHHCSLPTVALPNRD--SEEDDILDDEFNSFAAGQNCGT- 361

Query: 1155 LSSRICGDSIRPGIVHRLDKGTSGLLVIAKDDHSHAHLSEQFKQRTIHRVYISLTAGVPS 976
                 C  +IRPGIVHRLDKGTSGLLV+AKD+HSHAHLSEQFK  +IHRVYISLT+GVP+
Sbjct: 362  -----CETNIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHSIHRVYISLTSGVPT 416

Query: 975  PMAGRIEVPIGRDLNNRIRMVAVPGPSNCRQVXXXXXXXXXYKVIEVLGGGGSALVEWRL 796
            P++GR+E+P+GRD NNRIRM AVPGPSN  Q          YKVIE+L  GGSALVEWRL
Sbjct: 417  PLSGRVEIPVGRDPNNRIRMTAVPGPSNSGQARHAASR---YKVIEILAAGGSALVEWRL 473

Query: 795  ETGRTHQIRAHAKHLGIPLLGDEVYGGTKSMALSLLQCRTPASCHGNLSQLVSKLDRPCL 616
            ETGRTHQIRAHAK+LGIPLLGDEVYGGTK+MALSLL+ R P+S HG L+QLVS+LDRPCL
Sbjct: 474  ETGRTHQIRAHAKYLGIPLLGDEVYGGTKNMALSLLRPRIPSSHHGQLAQLVSRLDRPCL 533

Query: 615  HALALGFKHPHTGENTQFSCPPPADFAEILSLLRNINTEK 496
            HA+ALGF HP TG+N  FSC PP DFAEILS LR I+TEK
Sbjct: 534  HAVALGFNHPKTGKNVHFSCQPPEDFAEILSWLRKISTEK 573


>ref|XP_003523282.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like isoform
            X1 [Glycine max] gi|571448797|ref|XP_006577958.1|
            PREDICTED: RNA pseudouridine synthase 2,
            chloroplastic-like isoform X2 [Glycine max]
          Length = 450

 Score =  496 bits (1276), Expect = e-137
 Identities = 253/386 (65%), Positives = 301/386 (77%), Gaps = 4/386 (1%)
 Frame = -1

Query: 1632 NYAGVRLQETVQK--GSEKXXXXXXXXXXXSCVSRARVQSSIRSGLVSVNGRVIDKVSHV 1459
            N++GVRL+E V    GS K           + +SRARVQSSI+SGLV VNGRV+DKVS  
Sbjct: 63   NFSGVRLEEAVDSRIGSGKLRLDNWISSRINGISRARVQSSIKSGLVHVNGRVVDKVSFN 122

Query: 1458 IKVGDKVNCTISELQPLRAEPEDIPLNIVYEDTHVLVVNKPAHMVVHPAPGNANGTLVNA 1279
            +K GD++ CTI+ELQ LRA P++IPL+IVYED HVLV+NKPAHMVVHPAPGN +GTLVN 
Sbjct: 123  VKSGDEIKCTIAELQNLRAVPQNIPLDIVYEDEHVLVINKPAHMVVHPAPGNTSGTLVNG 182

Query: 1278 ILHHCSLPTVALSNGEILSELEDDSDNEISNFSLDQSSREGLSSR--ICGDSIRPGIVHR 1105
            ILHHC+LP V  S  E LS+ ED SD+E +++    SS EGL+SR  +  +SIRPGIVHR
Sbjct: 183  ILHHCNLPNVEFSKDEALSDTED-SDDEFNSYISLASSCEGLNSRLSVASNSIRPGIVHR 241

Query: 1104 LDKGTSGLLVIAKDDHSHAHLSEQFKQRTIHRVYISLTAGVPSPMAGRIEVPIGRDLNNR 925
            LDKGTSGLLV+AKD+HSH  LSEQFKQRTI R+Y+SLTAGVP+P+AGR+EVP+GRD NNR
Sbjct: 242  LDKGTSGLLVVAKDEHSHMKLSEQFKQRTIKRLYVSLTAGVPTPVAGRVEVPVGRDTNNR 301

Query: 924  IRMVAVPGPSNCRQVXXXXXXXXXYKVIEVLGGGGSALVEWRLETGRTHQIRAHAKHLGI 745
            IRM AV GP N ++          YKVIE+L GG  +LVEW+LETGRTHQIRAHAK+LG+
Sbjct: 302  IRMTAVTGPVNSKKARYAASR---YKVIEILAGGSCSLVEWKLETGRTHQIRAHAKYLGV 358

Query: 744  PLLGDEVYGGTKSMALSLLQCRTPASCHGNLSQLVSKLDRPCLHALALGFKHPHTGENTQ 565
            PLLGDE+YGGTKSM LSLL+ RTP S H  + ++VS+LDRPCLHA  LGF+HPHTGE   
Sbjct: 359  PLLGDELYGGTKSMVLSLLRPRTPISLHSKIVKMVSRLDRPCLHAWTLGFQHPHTGEQVH 418

Query: 564  FSCPPPADFAEILSLLRNINTEKPSF 487
            FSC PPADFAEILS LR I +E  SF
Sbjct: 419  FSCEPPADFAEILSQLRRIGSETVSF 444


>ref|XP_007136120.1| hypothetical protein PHAVU_009G019500g [Phaseolus vulgaris]
            gi|561009207|gb|ESW08114.1| hypothetical protein
            PHAVU_009G019500g [Phaseolus vulgaris]
          Length = 447

 Score =  494 bits (1273), Expect = e-137
 Identities = 252/392 (64%), Positives = 299/392 (76%), Gaps = 2/392 (0%)
 Frame = -1

Query: 1641 QRSNYAGVRLQETVQK--GSEKXXXXXXXXXXXSCVSRARVQSSIRSGLVSVNGRVIDKV 1468
            ++ N++G+RL+E V    GS K           + +SRARVQSSI+SGLV VNGRV+DK 
Sbjct: 59   RKLNFSGLRLEEAVDSRIGSAKLRLDSWISSRINGISRARVQSSIKSGLVHVNGRVVDKA 118

Query: 1467 SHVIKVGDKVNCTISELQPLRAEPEDIPLNIVYEDTHVLVVNKPAHMVVHPAPGNANGTL 1288
            S  +K GD++ CTI+ELQ LRA PE+IPL+IVYED HVLV+NKPAHMVVHPAPGN +GTL
Sbjct: 119  SFNVKAGDQIKCTIAELQKLRAVPENIPLDIVYEDEHVLVINKPAHMVVHPAPGNTSGTL 178

Query: 1287 VNAILHHCSLPTVALSNGEILSELEDDSDNEISNFSLDQSSREGLSSRICGDSIRPGIVH 1108
            VN ILHHC+LP V  S  E LS+ ED  D+E++++    SS EG  SR    SIRPGIVH
Sbjct: 179  VNGILHHCNLPNVEFSKEEGLSDTED-CDDEVNSYGSLASSCEGSHSRPSMSSIRPGIVH 237

Query: 1107 RLDKGTSGLLVIAKDDHSHAHLSEQFKQRTIHRVYISLTAGVPSPMAGRIEVPIGRDLNN 928
            RLDKGTSGLLV+AKD+HSH  LSEQFKQRTI RVY+SLTAGVP P++GR++VP+GRDLNN
Sbjct: 238  RLDKGTSGLLVVAKDEHSHMKLSEQFKQRTIKRVYVSLTAGVPRPISGRVDVPVGRDLNN 297

Query: 927  RIRMVAVPGPSNCRQVXXXXXXXXXYKVIEVLGGGGSALVEWRLETGRTHQIRAHAKHLG 748
            R+RM AV GP N R+          YKVIE+L GG  +LVEW+LETGRTHQIRAHAK+LG
Sbjct: 298  RLRMTAVAGPVNSRKARHAASR---YKVIEILAGGSCSLVEWKLETGRTHQIRAHAKYLG 354

Query: 747  IPLLGDEVYGGTKSMALSLLQCRTPASCHGNLSQLVSKLDRPCLHALALGFKHPHTGENT 568
            +PLLGDEVYGGTKSM LSLL+ R+P S HG + Q+VS LDRPCLHAL LGF+HPHTGE  
Sbjct: 355  VPLLGDEVYGGTKSMVLSLLRPRSPISLHGKIVQMVSSLDRPCLHALTLGFQHPHTGEQV 414

Query: 567  QFSCPPPADFAEILSLLRNINTEKPSFKN*SD 472
             FSC PP DF EILS LR I +E  SF   S+
Sbjct: 415  HFSCEPPVDFDEILSQLRRIGSESVSFSKPSN 446


>ref|XP_007136119.1| hypothetical protein PHAVU_009G019500g [Phaseolus vulgaris]
            gi|561009206|gb|ESW08113.1| hypothetical protein
            PHAVU_009G019500g [Phaseolus vulgaris]
          Length = 458

 Score =  486 bits (1251), Expect = e-134
 Identities = 252/403 (62%), Positives = 299/403 (74%), Gaps = 13/403 (3%)
 Frame = -1

Query: 1641 QRSNYAGVRLQETVQK--GSEKXXXXXXXXXXXSCVSRARVQSSIRSGLVSVNGRVIDK- 1471
            ++ N++G+RL+E V    GS K           + +SRARVQSSI+SGLV VNGRV+DK 
Sbjct: 59   RKLNFSGLRLEEAVDSRIGSAKLRLDSWISSRINGISRARVQSSIKSGLVHVNGRVVDKK 118

Query: 1470 ----------VSHVIKVGDKVNCTISELQPLRAEPEDIPLNIVYEDTHVLVVNKPAHMVV 1321
                       S  +K GD++ CTI+ELQ LRA PE+IPL+IVYED HVLV+NKPAHMVV
Sbjct: 119  SKHQPEQYALASFNVKAGDQIKCTIAELQKLRAVPENIPLDIVYEDEHVLVINKPAHMVV 178

Query: 1320 HPAPGNANGTLVNAILHHCSLPTVALSNGEILSELEDDSDNEISNFSLDQSSREGLSSRI 1141
            HPAPGN +GTLVN ILHHC+LP V  S  E LS+ ED  D+E++++    SS EG  SR 
Sbjct: 179  HPAPGNTSGTLVNGILHHCNLPNVEFSKEEGLSDTED-CDDEVNSYGSLASSCEGSHSRP 237

Query: 1140 CGDSIRPGIVHRLDKGTSGLLVIAKDDHSHAHLSEQFKQRTIHRVYISLTAGVPSPMAGR 961
               SIRPGIVHRLDKGTSGLLV+AKD+HSH  LSEQFKQRTI RVY+SLTAGVP P++GR
Sbjct: 238  SMSSIRPGIVHRLDKGTSGLLVVAKDEHSHMKLSEQFKQRTIKRVYVSLTAGVPRPISGR 297

Query: 960  IEVPIGRDLNNRIRMVAVPGPSNCRQVXXXXXXXXXYKVIEVLGGGGSALVEWRLETGRT 781
            ++VP+GRDLNNR+RM AV GP N R+          YKVIE+L GG  +LVEW+LETGRT
Sbjct: 298  VDVPVGRDLNNRLRMTAVAGPVNSRKARHAASR---YKVIEILAGGSCSLVEWKLETGRT 354

Query: 780  HQIRAHAKHLGIPLLGDEVYGGTKSMALSLLQCRTPASCHGNLSQLVSKLDRPCLHALAL 601
            HQIRAHAK+LG+PLLGDEVYGGTKSM LSLL+ R+P S HG + Q+VS LDRPCLHAL L
Sbjct: 355  HQIRAHAKYLGVPLLGDEVYGGTKSMVLSLLRPRSPISLHGKIVQMVSSLDRPCLHALTL 414

Query: 600  GFKHPHTGENTQFSCPPPADFAEILSLLRNINTEKPSFKN*SD 472
            GF+HPHTGE   FSC PP DF EILS LR I +E  SF   S+
Sbjct: 415  GFQHPHTGEQVHFSCEPPVDFDEILSQLRRIGSESVSFSKPSN 457


>ref|XP_004500918.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Cicer
            arietinum]
          Length = 438

 Score =  485 bits (1249), Expect = e-134
 Identities = 255/428 (59%), Positives = 307/428 (71%), Gaps = 2/428 (0%)
 Frame = -1

Query: 1776 SSFFFFPKIKNPRISSRVFRIIVNXXXXXXXXXXXXXXXXEPLSIQRSNYAGVRLQETV- 1600
            SS FFF   K PR  +R    + +                      +SNYAGVRL+E V 
Sbjct: 29   SSLFFFSPTKFPRGVARAVSGLADDSNSNGEP--------------KSNYAGVRLEEIVD 74

Query: 1599 -QKGSEKXXXXXXXXXXXSCVSRARVQSSIRSGLVSVNGRVIDKVSHVIKVGDKVNCTIS 1423
             +  S K           + +SRARVQSSI++GLV VNGR++DKVS  ++ GD++ CTI+
Sbjct: 75   GEIKSGKLRLDTWISSRINGISRARVQSSIKAGLVHVNGRLVDKVSFNVRAGDEIKCTIA 134

Query: 1422 ELQPLRAEPEDIPLNIVYEDTHVLVVNKPAHMVVHPAPGNANGTLVNAILHHCSLPTVAL 1243
            ELQ LRA PE+IPL+IVYED H+LV+NKPAHMVVHPAPGN +GTLVN ILHHC+LP V  
Sbjct: 135  ELQKLRAVPENIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNVEF 194

Query: 1242 SNGEILSELEDDSDNEISNFSLDQSSREGLSSRICGDSIRPGIVHRLDKGTSGLLVIAKD 1063
            S  E LS+ ED SD+E++ F+    S EGL SR+   SIRPGIVHRLDKGTSGLLV+AKD
Sbjct: 195  SKDEALSDTED-SDDELNGFTSQAPSCEGLDSRLSIASIRPGIVHRLDKGTSGLLVVAKD 253

Query: 1062 DHSHAHLSEQFKQRTIHRVYISLTAGVPSPMAGRIEVPIGRDLNNRIRMVAVPGPSNCRQ 883
            +HSH  LSEQFK RTI RVYISLTAGVP+P+AGR+EVP+GRD NNR+RM AV GP    +
Sbjct: 254  EHSHMKLSEQFKLRTIKRVYISLTAGVPTPVAGRVEVPVGRDPNNRLRMTAVAGPLTSMK 313

Query: 882  VXXXXXXXXXYKVIEVLGGGGSALVEWRLETGRTHQIRAHAKHLGIPLLGDEVYGGTKSM 703
                      YKVIE+L GG  ALVEW+LETGRTHQIRAHA++LG+PLLGDEVYGGTK+M
Sbjct: 314  ARHAASR---YKVIEILAGGSCALVEWKLETGRTHQIRAHARYLGVPLLGDEVYGGTKNM 370

Query: 702  ALSLLQCRTPASCHGNLSQLVSKLDRPCLHALALGFKHPHTGENTQFSCPPPADFAEILS 523
             LSLL+ RT  S HG ++++VS+LDRPCLHA+ LGF+HPHTGE   FSC PP DF EILS
Sbjct: 371  VLSLLRPRTTPSLHGEMTKMVSELDRPCLHAMTLGFQHPHTGEQVHFSCEPPVDFNEILS 430

Query: 522  LLRNINTE 499
             LR I  +
Sbjct: 431  QLRRIGRQ 438


>ref|XP_006828851.1| hypothetical protein AMTR_s00001p00157430 [Amborella trichopoda]
            gi|548833830|gb|ERM96267.1| hypothetical protein
            AMTR_s00001p00157430 [Amborella trichopoda]
          Length = 452

 Score =  485 bits (1248), Expect = e-134
 Identities = 243/376 (64%), Positives = 286/376 (76%)
 Frame = -1

Query: 1629 YAGVRLQETVQKGSEKXXXXXXXXXXXSCVSRARVQSSIRSGLVSVNGRVIDKVSHVIKV 1450
            Y G++ + +V  GS+K             VSRAR+QSSIR G V VNG  I KVSH++KV
Sbjct: 67   YGGLQFESSVAVGSKKERIDSWLSARIGDVSRARIQSSIRQGFVKVNGLPITKVSHIVKV 126

Query: 1449 GDKVNCTISELQPLRAEPEDIPLNIVYEDTHVLVVNKPAHMVVHPAPGNANGTLVNAILH 1270
            GD V+CT+S LQPL+AEPED+PL+I+YED HVLVVNKPAHMVVHPAPGNANGTLVN ILH
Sbjct: 127  GDMVDCTVSHLQPLKAEPEDMPLDIIYEDDHVLVVNKPAHMVVHPAPGNANGTLVNGILH 186

Query: 1269 HCSLPTVALSNGEILSELEDDSDNEISNFSLDQSSREGLSSRICGDSIRPGIVHRLDKGT 1090
            HC+LP   L +GE+ SE +D+ DN ++ F+ D  S +      C  SIRPGIVHRLDKGT
Sbjct: 187  HCTLPAFGLPDGELTSESDDECDNGLTMFNPDPISTQ------CRSSIRPGIVHRLDKGT 240

Query: 1089 SGLLVIAKDDHSHAHLSEQFKQRTIHRVYISLTAGVPSPMAGRIEVPIGRDLNNRIRMVA 910
            SGLLV+AK++HSHAHLSEQFK  TIHR YISLT GVPSP  G IE+PI RD+NNRIRM A
Sbjct: 241  SGLLVVAKNEHSHAHLSEQFKLHTIHRQYISLTCGVPSPSNGCIEIPIARDMNNRIRMAA 300

Query: 909  VPGPSNCRQVXXXXXXXXXYKVIEVLGGGGSALVEWRLETGRTHQIRAHAKHLGIPLLGD 730
            V G +N R+          Y V+EVL GGGSALVEWRL+TGRTHQIR HAK++G PLLGD
Sbjct: 301  VSGQNNTRKA---RLATSRYHVMEVLAGGGSALVEWRLQTGRTHQIRVHAKYIGNPLLGD 357

Query: 729  EVYGGTKSMALSLLQCRTPASCHGNLSQLVSKLDRPCLHALALGFKHPHTGENTQFSCPP 550
            EVYGGTKSMALS L+ RTP+  HG LSQLVS L RPCLHA +LGFKHPH+ EN  F+CPP
Sbjct: 358  EVYGGTKSMALSRLRPRTPSHYHGPLSQLVSNLQRPCLHAFSLGFKHPHSKENVLFTCPP 417

Query: 549  PADFAEILSLLRNINT 502
            P DFAE+L  L++I +
Sbjct: 418  PPDFAEVLRQLQSIRS 433


>ref|XP_006390244.1| hypothetical protein EUTSA_v10018588mg [Eutrema salsugineum]
            gi|557086678|gb|ESQ27530.1| hypothetical protein
            EUTSA_v10018588mg [Eutrema salsugineum]
          Length = 432

 Score =  483 bits (1243), Expect = e-133
 Identities = 253/387 (65%), Positives = 293/387 (75%), Gaps = 1/387 (0%)
 Frame = -1

Query: 1653 PLSIQRSNYAGVRLQETVQKGSE-KXXXXXXXXXXXSCVSRARVQSSIRSGLVSVNGRVI 1477
            P SI R N AG++L+ETV+   + K             VSRARVQSSIR GLVSVNGRV+
Sbjct: 58   PESIPRVNNAGLKLEETVEAAVKAKIRLDSWISSRVHGVSRARVQSSIRLGLVSVNGRVV 117

Query: 1476 DKVSHVIKVGDKVNCTISELQPLRAEPEDIPLNIVYEDTHVLVVNKPAHMVVHPAPGNAN 1297
            DKVSH +K GD+VNCTISELQPL+AEPEDIPL+IVYED H+LVVNKPAHMVVHPAPGN  
Sbjct: 118  DKVSHNVKAGDEVNCTISELQPLKAEPEDIPLDIVYEDKHLLVVNKPAHMVVHPAPGNPT 177

Query: 1296 GTLVNAILHHCSLPTVALSNGEILSELEDDSDNEISNFSLDQSSREGLSSRICGDSIRPG 1117
            GTLVN ILHHCSLP VA SN       EDDSD E  +   + +S   L++     S+RPG
Sbjct: 178  GTLVNGILHHCSLPCVAYSNP------EDDSDEETLSDDEEMTSSSSLAA-----SVRPG 226

Query: 1116 IVHRLDKGTSGLLVIAKDDHSHAHLSEQFKQRTIHRVYISLTAGVPSPMAGRIEVPIGRD 937
            IVHRLDKGTSGLLV+AKD+HSHAHL+EQFK  TI RVYISLT+GVPSP  GR+++PIGRD
Sbjct: 227  IVHRLDKGTSGLLVVAKDEHSHAHLAEQFKLHTIERVYISLTSGVPSPSQGRVDIPIGRD 286

Query: 936  LNNRIRMVAVPGPSNCRQVXXXXXXXXXYKVIEVLGGGGSALVEWRLETGRTHQIRAHAK 757
             NNRIRM A+PG  +  +          YKVIE L GGGSALVEWRLETGRTHQIRAHAK
Sbjct: 287  PNNRIRMAAIPGSLSRGKA---RHAASRYKVIETLAGGGSALVEWRLETGRTHQIRAHAK 343

Query: 756  HLGIPLLGDEVYGGTKSMALSLLQCRTPASCHGNLSQLVSKLDRPCLHALALGFKHPHTG 577
            ++G+PLLGDEVYGGTKS+ALSLLQ R   S    + +LVS++DRPCLHA+ LGF+HP TG
Sbjct: 344  YMGVPLLGDEVYGGTKSVALSLLQRRVSRSDQEQILELVSRMDRPCLHAIVLGFEHPCTG 403

Query: 576  ENTQFSCPPPADFAEILSLLRNINTEK 496
            E  +FSCPPP+D AEI+ LLR    EK
Sbjct: 404  EVVKFSCPPPSDLAEIVGLLRRSGREK 430


>ref|NP_974151.1| RNA pseudourine synthase 2 [Arabidopsis thaliana]
            gi|122215273|sp|Q3ECD0.1|PUS2_ARATH RecName: Full=RNA
            pseudouridine synthase 2, chloroplastic; AltName:
            Full=RNA pseudouridylate synthase 2; AltName:
            Full=RNA-uridine isomerase 2; Flags: Precursor
            gi|332197669|gb|AEE35790.1| RNA pseudourine synthase 2
            [Arabidopsis thaliana]
          Length = 430

 Score =  473 bits (1218), Expect = e-130
 Identities = 257/420 (61%), Positives = 296/420 (70%), Gaps = 1/420 (0%)
 Frame = -1

Query: 1770 FFFFPKIKN-PRISSRVFRIIVNXXXXXXXXXXXXXXXXEPLSIQRSNYAGVRLQETVQK 1594
            F FFPK+ N  R SS +  ++                    + I R N AG+R++E V  
Sbjct: 32   FSFFPKVSNFVRASSGIPNLVA--------------CSPTEIIIPRVNNAGLRIEEIVDA 77

Query: 1593 GSEKXXXXXXXXXXXSCVSRARVQSSIRSGLVSVNGRVIDKVSHVIKVGDKVNCTISELQ 1414
               K           + VSRARVQSSIR GLV+VNGRV+DKVSH +K GD+VNCTISELQ
Sbjct: 78   AKGKIRLDSWISSRINGVSRARVQSSIRLGLVTVNGRVVDKVSHNVKSGDEVNCTISELQ 137

Query: 1413 PLRAEPEDIPLNIVYEDTHVLVVNKPAHMVVHPAPGNANGTLVNAILHHCSLPTVALSNG 1234
            PL+AE EDIPL+IVYED HVLVVNKPAHMVVHPAPGN  GTLVN ILHHCSLP V  SN 
Sbjct: 138  PLKAEAEDIPLDIVYEDKHVLVVNKPAHMVVHPAPGNPTGTLVNGILHHCSLPCVDYSN- 196

Query: 1233 EILSELEDDSDNEISNFSLDQSSREGLSSRICGDSIRPGIVHRLDKGTSGLLVIAKDDHS 1054
               SE +DDSD E   FS D+      SS     S+RPGIVHRLDKGT+GLLV+AKD+HS
Sbjct: 197  ---SEEDDDSDEE--TFSDDEEMTTSPSSYAA--SVRPGIVHRLDKGTTGLLVVAKDEHS 249

Query: 1053 HAHLSEQFKQRTIHRVYISLTAGVPSPMAGRIEVPIGRDLNNRIRMVAVPGPSNCRQVXX 874
            HAHL+EQFK  TI RVY+SLT GVPSP  GRIE+PIGRD +NRIRM A+PG     +   
Sbjct: 250  HAHLAEQFKLHTIERVYVSLTTGVPSPPQGRIEIPIGRDSSNRIRMAAIPGGVRGGRA-- 307

Query: 873  XXXXXXXYKVIEVLGGGGSALVEWRLETGRTHQIRAHAKHLGIPLLGDEVYGGTKSMALS 694
                   YKVIE   GGGSALVEWRLETGRTHQIRAHAK++G+PLLGDEVYGGTKSMALS
Sbjct: 308  -RHAASRYKVIETFAGGGSALVEWRLETGRTHQIRAHAKYMGVPLLGDEVYGGTKSMALS 366

Query: 693  LLQCRTPASCHGNLSQLVSKLDRPCLHALALGFKHPHTGENTQFSCPPPADFAEILSLLR 514
            LLQ R   S    + +L+S++DRPCLHA+ LGF HP TGE  +FSCPPP+D AEI+ LLR
Sbjct: 367  LLQKRVSRSDQEEIIELISRMDRPCLHAIVLGFTHPCTGEIVKFSCPPPSDLAEIVGLLR 426


>ref|XP_006302277.1| hypothetical protein CARUB_v10020321mg [Capsella rubella]
            gi|482570987|gb|EOA35175.1| hypothetical protein
            CARUB_v10020321mg [Capsella rubella]
          Length = 432

 Score =  473 bits (1216), Expect = e-130
 Identities = 249/382 (65%), Positives = 287/382 (75%)
 Frame = -1

Query: 1644 IQRSNYAGVRLQETVQKGSEKXXXXXXXXXXXSCVSRARVQSSIRSGLVSVNGRVIDKVS 1465
            + R N AG+R++ETV     K           + VSRARVQSSIR GLV+VNGRV+DKVS
Sbjct: 61   LPRVNNAGLRIEETVDDLKGKIRLDSWISSRINGVSRARVQSSIRLGLVTVNGRVVDKVS 120

Query: 1464 HVIKVGDKVNCTISELQPLRAEPEDIPLNIVYEDTHVLVVNKPAHMVVHPAPGNANGTLV 1285
            H +K GD+VNCTISELQPL+AE EDIPL+IVYED HVLVVNKPAHMVVHPAPGN  GTLV
Sbjct: 121  HNVKAGDEVNCTISELQPLKAEAEDIPLDIVYEDKHVLVVNKPAHMVVHPAPGNPTGTLV 180

Query: 1284 NAILHHCSLPTVALSNGEILSELEDDSDNEISNFSLDQSSREGLSSRICGDSIRPGIVHR 1105
            N ILHHCSLP+VA S+ E     +DDSD+E  +FS      E  SS     S+RPGIVHR
Sbjct: 181  NGILHHCSLPSVAYSSPE-----DDDSDDE--SFS---DGEEMTSSSSYAASVRPGIVHR 230

Query: 1104 LDKGTSGLLVIAKDDHSHAHLSEQFKQRTIHRVYISLTAGVPSPMAGRIEVPIGRDLNNR 925
            LDKGT+GLLV+AKD+HSHAHL+EQFK  TI RVY+SLT GVPSP  GRIE+PIGRD +NR
Sbjct: 231  LDKGTTGLLVVAKDEHSHAHLAEQFKLHTIERVYVSLTTGVPSPPQGRIEIPIGRDSSNR 290

Query: 924  IRMVAVPGPSNCRQVXXXXXXXXXYKVIEVLGGGGSALVEWRLETGRTHQIRAHAKHLGI 745
            IRM A+PG  +  +          YKVIE L GGGSALVEWRLETGRTHQIRAHAK++G+
Sbjct: 291  IRMAAIPGGLSSGRA---RHAASRYKVIETLAGGGSALVEWRLETGRTHQIRAHAKYMGV 347

Query: 744  PLLGDEVYGGTKSMALSLLQCRTPASCHGNLSQLVSKLDRPCLHALALGFKHPHTGENTQ 565
            PLLGDEVYGGTKSMALSLLQ R   S    + +L+S+LDRPCLHA+ LGF HP TG+  +
Sbjct: 348  PLLGDEVYGGTKSMALSLLQKRVCRSDQDEIIELISRLDRPCLHAIVLGFTHPCTGKIVK 407

Query: 564  FSCPPPADFAEILSLLRNINTE 499
            FSCPPP D AEI+ LLR    E
Sbjct: 408  FSCPPPPDLAEIVGLLRRSGRE 429


>ref|XP_003603819.1| RNA pseudourine synthase [Medicago truncatula]
            gi|355492867|gb|AES74070.1| RNA pseudourine synthase
            [Medicago truncatula]
          Length = 465

 Score =  472 bits (1215), Expect = e-130
 Identities = 247/395 (62%), Positives = 293/395 (74%), Gaps = 12/395 (3%)
 Frame = -1

Query: 1638 RSNYAGVRLQETVQKG---SEKXXXXXXXXXXXSCVSRARVQSSIRSGLVSVNGRVIDKV 1468
            +SNYAGV L+E V  G   S K           + +SRARVQSSI++GLV VNGRV+DK+
Sbjct: 64   KSNYAGVLLEEIVHDGGIKSGKLRLDSWISSRINGISRARVQSSIKAGLVHVNGRVVDKL 123

Query: 1467 SHVI---------KVGDKVNCTISELQPLRAEPEDIPLNIVYEDTHVLVVNKPAHMVVHP 1315
            S V+         + GD++ CTI+ELQ LRA PE+IPL+IVYED H+LV+NKPAHMVVHP
Sbjct: 124  SIVVILEQVSFNVRAGDEIKCTIAELQQLRAVPENIPLDIVYEDDHLLVINKPAHMVVHP 183

Query: 1314 APGNANGTLVNAILHHCSLPTVALSNGEILSELEDDSDNEISNFSLDQSSREGLSSRICG 1135
            APGN +GTLVN ILHHC+LP V  S  E LS+ ED SD+E++ FS   SS  GL SR+  
Sbjct: 184  APGNTSGTLVNGILHHCNLPNVEFSKEEALSDTED-SDDELNGFSSQSSSSVGLDSRLSM 242

Query: 1134 DSIRPGIVHRLDKGTSGLLVIAKDDHSHAHLSEQFKQRTIHRVYISLTAGVPSPMAGRIE 955
             SIRPGIVHRLDKGTSGLLV+AK++HSH  LSEQFK RTI RVY+SLTAGVP+P++GR+E
Sbjct: 243  ASIRPGIVHRLDKGTSGLLVVAKNEHSHMKLSEQFKLRTIKRVYVSLTAGVPTPVSGRVE 302

Query: 954  VPIGRDLNNRIRMVAVPGPSNCRQVXXXXXXXXXYKVIEVLGGGGSALVEWRLETGRTHQ 775
            VP+GRD NNR+RM+AV G  N  +          YKVIE+L GG  ALVEW+LETGRTHQ
Sbjct: 303  VPVGRDPNNRLRMIAVAGLVNSVKARHAASR---YKVIEILAGGSCALVEWKLETGRTHQ 359

Query: 774  IRAHAKHLGIPLLGDEVYGGTKSMALSLLQCRTPASCHGNLSQLVSKLDRPCLHALALGF 595
            IRAHAK+LG+PLLGDEVYGGTKSM LSLL+ RT  S H  + + VS LDRPCLHA  LGF
Sbjct: 360  IRAHAKYLGVPLLGDEVYGGTKSMVLSLLRPRTTPSLHSEMFKTVSGLDRPCLHASTLGF 419

Query: 594  KHPHTGENTQFSCPPPADFAEILSLLRNINTEKPS 490
            +HPHTGE   FSC PP DF +ILS LR I +E  S
Sbjct: 420  QHPHTGEQVHFSCEPPVDFNDILSQLRRIGSESIS 454


>ref|XP_007017901.1| Pseudouridine synthase family protein isoform 2, partial [Theobroma
            cacao] gi|508723229|gb|EOY15126.1| Pseudouridine synthase
            family protein isoform 2, partial [Theobroma cacao]
          Length = 409

 Score =  471 bits (1212), Expect = e-130
 Identities = 252/386 (65%), Positives = 292/386 (75%), Gaps = 1/386 (0%)
 Frame = -1

Query: 1638 RSNYAGVRLQETVQKGSE-KXXXXXXXXXXXSCVSRARVQSSIRSGLVSVNGRVIDKVSH 1462
            R++Y GV+L+ETV    + K             +SRARVQSSI+SGLV+VNGRV+DKVSH
Sbjct: 47   RTSYTGVQLEETVDGTKQGKLRLDSWISSRIQGISRARVQSSIKSGLVTVNGRVVDKVSH 106

Query: 1461 VIKVGDKVNCTISELQPLRAEPEDIPLNIVYEDTHVLVVNKPAHMVVHPAPGNANGTLVN 1282
             ++ GDKVNC ISELQPLRAEPEDIPL+IVYED HVLVVNKP HMVVHPAPGNA GTLVN
Sbjct: 107  GLRHGDKVNCVISELQPLRAEPEDIPLDIVYEDDHVLVVNKPPHMVVHPAPGNATGTLVN 166

Query: 1281 AILHHCSLPTVALSNGEILSELEDDSDNEISNFSLDQSSREGLSSRICGDSIRPGIVHRL 1102
             ILHHCSLPTVALS  E+LS+ ED SD+       D+    G S+     S+RPGIVHRL
Sbjct: 167  GILHHCSLPTVALSEKEVLSDTEDVSDD-------DEGFCYGASA---AASVRPGIVHRL 216

Query: 1101 DKGTSGLLVIAKDDHSHAHLSEQFKQRTIHRVYISLTAGVPSPMAGRIEVPIGRDLNNRI 922
            DKGTSGLLV+AK           FKQ TI RVYISLT GVPSP AGR+++ IGRD NNR+
Sbjct: 217  DKGTSGLLVVAK-----------FKQHTIQRVYISLTCGVPSPSAGRVDISIGRDSNNRV 265

Query: 921  RMVAVPGPSNCRQVXXXXXXXXXYKVIEVLGGGGSALVEWRLETGRTHQIRAHAKHLGIP 742
            RM+AVPG ++  +          YKVIEVL GGGSAL++WRLETGRTHQIRAHAK++GIP
Sbjct: 266  RMIAVPGLNHHGRA---RHAASRYKVIEVLAGGGSALIQWRLETGRTHQIRAHAKYMGIP 322

Query: 741  LLGDEVYGGTKSMALSLLQCRTPASCHGNLSQLVSKLDRPCLHALALGFKHPHTGENTQF 562
            LLGDEVYGGTKSMALSLL+ RTP + +  LS+LVS+L+RP LHAL LGF+HPH+ E   F
Sbjct: 323  LLGDEVYGGTKSMALSLLRPRTPPNYNDQLSRLVSRLERPYLHALVLGFEHPHSREMMHF 382

Query: 561  SCPPPADFAEILSLLRNINTEKPSFK 484
            SC PP DFAEILS LR I TEKP+FK
Sbjct: 383  SCQPPPDFAEILSDLRKIGTEKPTFK 408


>gb|EYU17563.1| hypothetical protein MIMGU_mgv1a006781mg [Mimulus guttatus]
          Length = 422

 Score =  471 bits (1211), Expect = e-130
 Identities = 244/385 (63%), Positives = 296/385 (76%)
 Frame = -1

Query: 1650 LSIQRSNYAGVRLQETVQKGSEKXXXXXXXXXXXSCVSRARVQSSIRSGLVSVNGRVIDK 1471
            +S + +N++G +++ETV   S K           + +SRARVQSSIRSGLVSVNG VI K
Sbjct: 52   ISGRPNNFSGHKIEETVALDSAKLRVDSWISSRINGISRARVQSSIRSGLVSVNGHVISK 111

Query: 1470 VSHVIKVGDKVNCTISELQPLRAEPEDIPLNIVYEDTHVLVVNKPAHMVVHPAPGNANGT 1291
            VSHV++ GD VNCTI+ELQPLRAEPE+IPL+IVYED H+LVVNKPAHMVVHPAPGNANGT
Sbjct: 112  VSHVVRDGDSVNCTIAELQPLRAEPENIPLDIVYEDDHLLVVNKPAHMVVHPAPGNANGT 171

Query: 1290 LVNAILHHCSLPTVALSNGEILSELEDDSDNEISNFSLDQSSREGLSSRICGDSIRPGIV 1111
            LVN ILHHC L TV   N E L +  DD D      S+D+++     S     S+RPGIV
Sbjct: 172  LVNGILHHCRLSTVCF-NPESLPDNIDDDD------SIDEATVFPSES-----SVRPGIV 219

Query: 1110 HRLDKGTSGLLVIAKDDHSHAHLSEQFKQRTIHRVYISLTAGVPSPMAGRIEVPIGRDLN 931
            HRLDKGTSGLLV+AKD+HSH+HL+EQFK+ T+ RVY+SLT GVPSP++GR+++PIGRD N
Sbjct: 220  HRLDKGTSGLLVVAKDEHSHSHLAEQFKKHTVKRVYVSLTCGVPSPVSGRVDIPIGRDSN 279

Query: 930  NRIRMVAVPGPSNCRQVXXXXXXXXXYKVIEVLGGGGSALVEWRLETGRTHQIRAHAKHL 751
            NRIRMVA+PG +   +          YKV+E+L GGG ALVEWRLETGRTHQIRAHAK+L
Sbjct: 280  NRIRMVAIPGSALHGKA---RHAVSRYKVVEILAGGGCALVEWRLETGRTHQIRAHAKYL 336

Query: 750  GIPLLGDEVYGGTKSMALSLLQCRTPASCHGNLSQLVSKLDRPCLHALALGFKHPHTGEN 571
            GIPLLGD+VYGGTK MALS LQ +  +S +G + QLV+KL+RP LHAL+LGF+HPH GE+
Sbjct: 337  GIPLLGDDVYGGTKHMALSQLQSKNSSSYYGQIHQLVAKLERPSLHALSLGFRHPHKGED 396

Query: 570  TQFSCPPPADFAEILSLLRNINTEK 496
              FS  PP DFAEIL  LRNI++EK
Sbjct: 397  LHFSQMPPFDFAEILDCLRNISSEK 421