BLASTX nr result

ID: Akebia22_contig00012210 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia22_contig00012210
         (358 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI27227.3| unnamed protein product [Vitis vinifera]               61   1e-07
ref|XP_002275643.2| PREDICTED: DNA polymerase eta [Vitis vinifera]     60   4e-07
ref|XP_004295516.1| PREDICTED: DNA polymerase eta-like [Fragaria...    59   5e-07

>emb|CBI27227.3| unnamed protein product [Vitis vinifera]
          Length = 773

 Score = 61.2 bits (147), Expect = 1e-07
 Identities = 45/119 (37%), Positives = 63/119 (52%), Gaps = 9/119 (7%)
 Frame = +3

Query: 9   MSPSGSGNRLRMNQYMAQK-----ETGVNCLRPSLGRDEREGSETWNQKGTSSILRFFHT 173
           +S SGS + L +N    QK     ET +N   P+L + E++  + W  +GT SILRFF  
Sbjct: 473 LSHSGSESYLGLNPRETQKQFPGEETRINYDMPNLDQQEKK-RKMWEDQGTPSILRFFKR 531

Query: 174 HNPSGSSSEQIPDGLIRETAPLSLSG----NESCSGLNQVGPQKGTLGDETRIDSDRPS 338
           HNP+ S SEQ     I++T   S SG    +ESCS   Q+   K  +  ET  ++ R S
Sbjct: 532 HNPTSSLSEQEQVEPIQDTKVSSSSGLWTTSESCSETGQIQLPKEMMVAETESNARRDS 590



 Score = 59.3 bits (142), Expect = 5e-07
 Identities = 33/72 (45%), Positives = 45/72 (62%)
 Frame = +3

Query: 141 GTSSILRFFHTHNPSGSSSEQIPDGLIRETAPLSLSGNESCSGLNQVGPQKGTLGDETRI 320
           GT SI+++FH  + S SS +Q  D    E A LS SG+ES  GLN    QK   G+ETRI
Sbjct: 441 GTCSIMKYFHGQDLSSSSLKQPQDRSTEEAASLSHSGSESYLGLNPRETQKQFPGEETRI 500

Query: 321 DSDRPSVDRDEQ 356
           + D P++D+ E+
Sbjct: 501 NYDMPNLDQQEK 512


>ref|XP_002275643.2| PREDICTED: DNA polymerase eta [Vitis vinifera]
          Length = 779

 Score = 59.7 bits (143), Expect = 4e-07
 Identities = 44/116 (37%), Positives = 61/116 (52%), Gaps = 9/116 (7%)
 Frame = +3

Query: 18  SGSGNRLRMNQYMAQK-----ETGVNCLRPSLGRDEREGSETWNQKGTSSILRFFHTHNP 182
           SGS + L +N    QK     ET +N   P+L + E++  + W  +GT SILRFF  HNP
Sbjct: 482 SGSESYLGLNPRETQKQFPGEETRINYDMPNLDQQEKK-RKMWEDQGTPSILRFFKRHNP 540

Query: 183 SGSSSEQIPDGLIRETAPLSLSG----NESCSGLNQVGPQKGTLGDETRIDSDRPS 338
           + S SEQ     I++T   S SG    +ESCS   Q+   K  +  ET  ++ R S
Sbjct: 541 TSSLSEQEQVEPIQDTKVSSSSGLWTTSESCSETGQIQLPKEMMVAETESNARRDS 596


>ref|XP_004295516.1| PREDICTED: DNA polymerase eta-like [Fragaria vesca subsp. vesca]
          Length = 722

 Score = 59.3 bits (142), Expect = 5e-07
 Identities = 35/71 (49%), Positives = 45/71 (63%)
 Frame = +3

Query: 141 GTSSILRFFHTHNPSGSSSEQIPDGLIRETAPLSLSGNESCSGLNQVGPQKGTLGDETRI 320
           GT+SI ++FH H PS SS++Q+ D  I E+AP S SGNE+ S LN   PQ     +ETRI
Sbjct: 442 GTASITKYFHGHQPS-SSTKQLHDNFIEESAPPSPSGNENYSELNVNKPQIELPCEETRI 500

Query: 321 DSDRPSVDRDE 353
               PS+ R E
Sbjct: 501 KYADPSLHRPE 511


Top