BLASTX nr result

ID: Akebia22_contig00012158 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia22_contig00012158
         (5065 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana]              924   0.0  
gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group]     852   0.0  
gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Ja...   830   0.0  
gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sa...   827   0.0  
gb|AAM94350.1| gag-pol polyprotein [Zea mays]                         826   0.0  
gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japoni...   826   0.0  
dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]       822   0.0  
gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japoni...   819   0.0  
gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum...   818   0.0  
gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]                  818   0.0  
gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japoni...   816   0.0  
gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare]                  815   0.0  
gb|AAM15062.1| putative retroelement integrase [Arabidopsis thal...   795   0.0  
gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum ...   789   0.0  
gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum ...   788   0.0  
gb|ADP20179.1| gag-pol polyprotein [Silene latifolia]                 717   0.0  
gb|ABF97027.1| retrotransposon protein, putative, Ty3-gypsy subc...   828   0.0  
emb|CAN74973.1| hypothetical protein VITISV_001042 [Vitis vinifera]   704   0.0  
emb|CAN80356.1| hypothetical protein VITISV_003506 [Vitis vinifera]   837   0.0  
gb|ADP20178.1| gag-pol polyprotein [Silene latifolia]                 712   0.0  

>gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana]
          Length = 1887

 Score =  924 bits (2387), Expect(3) = 0.0
 Identities = 428/596 (71%), Positives = 518/596 (86%)
 Frame = +1

Query: 2146 PPFQTDQLKGVTPSRQRKVIELMEKGYVRENMSPCAVLVILVPKKDRLWRMCVDCRAINN 2325
            P ++T+ ++  T   +++V ELME+G++RE+MSPCAV V+LVPKKD  WRMCVDCRAINN
Sbjct: 914  PAYRTNPVE--TKELEKQVTELMERGHIRESMSPCAVPVLLVPKKDGSWRMCVDCRAINN 971

Query: 2326 IMVKYRHPIPRLDDMLDELHGSCVFSKIDLKSEYHRIRMKEGDEWKTKFKTKYGLYE*LV 2505
            I VKYRHPIPRLDDMLDELHGS +FSK+DLKS YH+IRMKEGDEWKT FKT  GLYE LV
Sbjct: 972  ITVKYRHPIPRLDDMLDELHGSSIFSKVDLKSGYHQIRMKEGDEWKTAFKTIQGLYEWLV 1031

Query: 2506 MPFGLINATSTFMRLMNHVLRAFIENFVVIYFDDILIYSQNLDDHLMHLKLVLDVLRKEK 2685
            MPFGL NA STFMRLMNHVLRAFI  FV++YFDDIL+YS++L++H+ HLK+VL+VLRKEK
Sbjct: 1032 MPFGLTNAPSTFMRLMNHVLRAFIGRFVIVYFDDILVYSKSLEEHVEHLKMVLEVLRKEK 1091

Query: 2686 LFANLKKCTFCTNKHVFLGFVTSTQGIQVDEEKIHAIQEWPSPTSVSNV*SFHGLASFYR 2865
            L+ANLKKCTF T+  VFLGFV ST G++VDEEK+ AI+EWPSP SV  V SFHGLA FYR
Sbjct: 1092 LYANLKKCTFGTDNLVFLGFVVSTDGVKVDEEKVKAIREWPSPKSVGEVRSFHGLAGFYR 1151

Query: 2866 RFVKDFNSIAAPITKVIKKNAGFKWGEEQEKAFQLIKQKLTHAPLHALPNFAKAFEIDCD 3045
            RFVKDF+++AAP+T+VIKKN GFKW + QE AFQ +K+KLTHAP+ +LP+F K FEI+CD
Sbjct: 1152 RFVKDFSTLAAPLTEVIKKNVGFKWEQAQEDAFQALKEKLTHAPVLSLPDFLKTFEIECD 1211

Query: 3046 ALGLGIGVVLIQEGRPLAYFSEKLSGAALNYPTYDKEMYALVRSLETWQYYLWPKEFVIH 3225
            A G+GIGVVL+Q+ +P+AYFSEKL GA LNYPTYDKE+YALVR+L+T Q+YLWPKEFVIH
Sbjct: 1212 ASGVGIGVVLMQDKKPIAYFSEKLGGATLNYPTYDKELYALVRALQTGQHYLWPKEFVIH 1271

Query: 3226 IDHESLKHLRGQHKLNKGRARWVEFFETFPYVIQYKQGKENIVADALSRRYILISTLDAK 3405
             DHESLKHL+GQ KLNK  ARWVEF ETFPYVI+YK+GK+N+VADALSRRY+L+S+LDAK
Sbjct: 1272 TDHESLKHLKGQQKLNKRHARWVEFIETFPYVIKYKKGKDNVVADALSRRYVLLSSLDAK 1331

Query: 3406 ILGFEHIKELYPLDHDFNEEYESCEETTNGKYFRHEGFLFRENKLCIPNCSVRDLLVRES 3585
            +LGFEHIK LY  D DF + Y SCE+   GKY+RH+GFLF +N+LCIPN S+R+L +RE+
Sbjct: 1332 LLGFEHIKSLYANDSDFEKIYSSCEKFAFGKYYRHDGFLFYDNRLCIPNSSLRELFIREA 1391

Query: 3586 HGGGLMGHFGVAKTLAILQEHFYWPHMKRDVERICGRCVTCRQAKSRVPPHGLYTPLPIP 3765
            HGGGLMGHFGV+KT+ ++Q+HF+WPHMKRDVERIC RC TC+QAK++  PHGLYTPLPIP
Sbjct: 1392 HGGGLMGHFGVSKTIKVMQDHFHWPHMKRDVERICERCPTCKQAKAKSQPHGLYTPLPIP 1451

Query: 3766 STPWIDISMDFMLGLPRSKRGRDSVFVVVDRFSKMAHFIPCHNMNDASHVADLLGR 3933
            S PW DISMDF++GLPR++ G+DS+FVVVDRFSKMAHFIPCH  +DA H+A+L  R
Sbjct: 1452 SHPWNDISMDFVVGLPRTRTGKDSIFVVVDRFSKMAHFIPCHKTDDAIHIANLFFR 1507



 Score =  212 bits (539), Expect(3) = 0.0
 Identities = 102/157 (64%), Positives = 129/157 (82%), Gaps = 1/157 (0%)
 Frame = +2

Query: 4172 AYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSERVNLDGKKKAEFVKQIHEKARLNI 4351
            AYN ++HSA+KF PF+IVY FNP TPLDL PLP+SERV+LDGKKKAE V+QIHE+A+ NI
Sbjct: 1589 AYNHSMHSASKFSPFQIVYGFNPTTPLDLMPLPLSERVSLDGKKKAELVQQIHEQAKKNI 1648

Query: 4352 E*RTEQYAKQANKGRHKIVFEAEDWVWLHMRKERFPAQRRSKLLPRGDGPFQVLEHINDN 4531
            E +T+QYAK ANK R +++F   D VW+H+RKERFP +R+SKL+ R DGPF+VL+ IN+N
Sbjct: 1649 EEKTKQYAKHANKSRKEVIFNEGDLVWIHLRKERFPKERKSKLMSRIDGPFKVLKRINNN 1708

Query: 4532 AYKLDLPGEYNVSATFNVSDLSPFDVGD-DWRTNPFQ 4639
            AY LDL G+YNVS +FNV+DL PF   + D R+NPFQ
Sbjct: 1709 AYSLDLQGKYNVSNSFNVADLFPFIADNTDLRSNPFQ 1745



 Score =  157 bits (398), Expect(3) = 0.0
 Identities = 72/83 (86%), Positives = 77/83 (92%)
 Frame = +3

Query: 3921 FVREIVRLHGMPRTIVPDRDAKFLSYFWKTLWCKLGTKLLFSTTCHPQTDGQMEVVNRTL 4100
            F RE+VRLHGMP+TIV DRD KFLSYFWKTLW KLGTKLLFSTTCHPQTDGQ EVVNRTL
Sbjct: 1505 FFREVVRLHGMPKTIVSDRDTKFLSYFWKTLWSKLGTKLLFSTTCHPQTDGQTEVVNRTL 1564

Query: 4101 STLLWAIIKKNIKTWEECLPHVE 4169
            STLL A+IKKN+KTWE+CLPHVE
Sbjct: 1565 STLLRALIKKNLKTWEDCLPHVE 1587



 Score =  220 bits (561), Expect(2) = 6e-98
 Identities = 114/231 (49%), Positives = 158/231 (68%), Gaps = 7/231 (3%)
 Frame = +3

Query: 420  SPRKFGRVRGARNRED-----NNLSSIKMKIPLFQGKNDPEAYLEWEKKVELVFDCHNYS 584
            S R+    R   +RE+     ++L+ +K++IP F+G NDP+ YLEWEKK+ELVF+C  Y+
Sbjct: 411  SSRQTNHRRRRHDREERVLPRDDLAGLKIRIPSFKGTNDPDEYLEWEKKIELVFNCQQYT 470

Query: 585  ENKKVKLAAIEFSDYAFVW*DQLVLNRRRNRERPIETWEEMKTVMRKRFVPSYYYRELYN 764
            E  KVK+A  EF +YA  W DQLV  RRR  + PIE+W +MKT+MRKRFVPS+YYREL+N
Sbjct: 471  EESKVKVAPTEFQNYALSWWDQLVTTRRRAGDYPIESWTQMKTIMRKRFVPSHYYRELHN 530

Query: 765  KLQSLKQGNRSXXXXXXXXXXXXIRANVEEDREATMSRFLVGLNREIANAVELQHYVELE 944
            +L++L QGN+S            +RA+++ED EA MSRF+ GLNR+I + +E+QHYVELE
Sbjct: 531  RLRNLVQGNKSVEEYYKEMETLMLRADIQEDNEAIMSRFMGGLNRDIIDRLEVQHYVELE 590

Query: 945  DMVHMAIKIENQLKRRGS--TCPSQNPSTSAWKSNHWKKDEKQLMMKPKTE 1091
            +++H AI  E QLKRR S  +  S  PS    + + ++KD K   +KPK E
Sbjct: 591  ELLHKAIMFEKQLKRRSSKPSFGSGKPSYHKDERSGFQKDYKP-FIKPKVE 640



 Score =  168 bits (425), Expect(2) = 6e-98
 Identities = 86/174 (49%), Positives = 112/174 (64%), Gaps = 1/174 (0%)
 Frame = +2

Query: 1091 VKKEATSHGNQGKSDSSTSRNHDIKCFKCQGRGHIASQCPNKRVMVLRXXXXXXXXXXXX 1270
            +K +      +GK  +  +R  DIK FKCQG GH AS+C NKR+M+++            
Sbjct: 635  IKPKVEDQDQKGKGKAVMTRTRDIKGFKCQGHGHYASECSNKRIMIIKDTGEIESEDEQL 694

Query: 1271 XXFMPPLEDANDKEYAAQG-GDLLVARRALSVQAKEDGEVQLENIFHTRCHVQNKVCSVI 1447
                   E ++ ++Y A   G+LLV  +ALSV AK D + Q EN+FH+ C V +KVCS+I
Sbjct: 695  E------ESSSTEDYEAPSKGELLVTMKALSVIAKTDEQEQRENLFHSSCMVNDKVCSLI 748

Query: 1448 IDGGSCTNVASTIMVEKLGLQTTKHPRPYKLQWLNDSGEVKVNKQVLVSFCIGK 1609
            IDGGSCTNVAS  MVEKLGL+  KHPRPYKLQWLN+ GE+ V++QV V   IGK
Sbjct: 749  IDGGSCTNVASETMVEKLGLKVMKHPRPYKLQWLNEDGEMSVDRQVKVPLSIGK 802



 Score = 89.4 bits (220), Expect = 2e-14
 Identities = 45/102 (44%), Positives = 67/102 (65%)
 Frame = +3

Query: 1893 ERKTERKTNFYAKASEIKRAMFSNQPMIVLLYKEAYFNANQLNASLPSSVVSLLQDFDDI 2072
            +++T + +N     S+ K + F +  ++  ++KE   +      ++PS +  LLQD+ D+
Sbjct: 825  KKQTVKPSNLMINESKQKGSGFQSSKLL-FVFKETLMSLTNPEQAIPSKIKFLLQDYTDV 883

Query: 2073 FPKEIPNGLPPIRGIEHQIDFVLGATIPN*PA*RSNPE*TKE 2198
            FP+E P GLPPIRGIEHQIDFV GA++PN PA R+NP  TKE
Sbjct: 884  FPEENPVGLPPIRGIEHQIDFVPGASLPNRPAYRTNPVETKE 925


>gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1713

 Score =  852 bits (2200), Expect(3) = 0.0
 Identities = 401/583 (68%), Positives = 485/583 (83%), Gaps = 1/583 (0%)
 Frame = +1

Query: 2179 TPSRQRKVIELMEKGYVRENMSPCAVLVILVPKKDRLWRMCVDCRAINNIMVKYRHPIPR 2358
            T   QR+V  L++KGYVRE++SPCAV VILVPKKD  WRMCVDCRAINNI V+YRHPIPR
Sbjct: 734  TKEIQRQVQALLDKGYVRESLSPCAVPVILVPKKDGSWRMCVDCRAINNITVRYRHPIPR 793

Query: 2359 LDDMLDELHGSCVFSKIDLKSEYHRIRMKEGDEWKTKFKTKYGLYE*LVMPFGLINATST 2538
            LDDMLDEL GS +FSKIDL+S +H+IRMK GDEWKT FKTK+GLYE LVMPFGL NA ST
Sbjct: 794  LDDMLDELSGSMIFSKIDLRSGFHQIRMKIGDEWKTAFKTKFGLYEWLVMPFGLTNAPST 853

Query: 2539 FMRLMNHVLRAFIENFVVIYFDDILIYSQNLDDHLMHLKLVLDVLRKEKLFANLKKCTFC 2718
            FMRLMNHVLRAFI  FVV+YFDDILIYS+ L++H+ H++ VLDVLRKE+L+ANL+KCTFC
Sbjct: 854  FMRLMNHVLRAFIGKFVVVYFDDILIYSKTLEEHVAHIQQVLDVLRKEQLYANLEKCTFC 913

Query: 2719 TNKHVFLGFVTSTQGIQVDEEKIHAIQEWPSPTSVSNV*SFHGLASFYRRFVKDFNSIAA 2898
            T++ VFLGFV S  GIQVDE K+ AI++WP+P +VS V SF GLA FYRRFV+ F++IAA
Sbjct: 914  TDQVVFLGFVVSGLGIQVDESKVKAIKDWPTPENVSQVKSFRGLAGFYRRFVRGFSTIAA 973

Query: 2899 PITKVIKKNAGFKWGEEQEKAFQLIKQKLTHAPLHALPNFAKAFEIDCDALGLGIGVVLI 3078
            P+ ++ KK   F+WGE QEKAFQ +K++L+  PL  LP+F K FE++CDA G+GIG VL+
Sbjct: 974  PLNELTKKGVAFQWGEPQEKAFQELKKRLSEGPLLVLPDFTKTFEVECDASGIGIGGVLM 1033

Query: 3079 QEGRPLAYFSEKLSGAALNYPTYDKEMYALVRSLETWQYYLWPKEFVIHIDHESLKHLRG 3258
            Q G+P+AYFSEKL GA LNY  YDKE+YALVR+LETWQ+YLWPKEFVIH DHE+LK+L+G
Sbjct: 1034 QNGQPVAYFSEKLGGAQLNYSVYDKELYALVRALETWQHYLWPKEFVIHSDHEALKYLKG 1093

Query: 3259 QHKLNKGRARWVEFFETFPYVIQYKQGKENIVADALSRRYILISTLDAKILGFEHIKELY 3438
            Q KLN+  A+WVEF ETFPYV++YK+GKENIVADALSR+ +L++ L+ K+ G E IKELY
Sbjct: 1094 QAKLNRRHAKWVEFIETFPYVVKYKKGKENIVADALSRKNVLLNQLEVKVTGIESIKELY 1153

Query: 3439 PLDHDFNEEYESCEETTN-GKYFRHEGFLFRENKLCIPNCSVRDLLVRESHGGGLMGHFG 3615
              D DF+E Y  C       KY  H+GFLFR NKLC+P+CSVR LL++E+H GGLMGHFG
Sbjct: 1154 SADLDFSEPYAKCTAGKGWEKYHIHDGFLFRANKLCVPHCSVRLLLLQETHAGGLMGHFG 1213

Query: 3616 VAKTLAILQEHFYWPHMKRDVERICGRCVTCRQAKSRVPPHGLYTPLPIPSTPWIDISMD 3795
              KT  +L +HFYWP M+RDV+R+  RCVTC +AKS++ PHGLYTPLP+PS PW DISMD
Sbjct: 1214 WRKTYDMLADHFYWPKMRRDVQRLVQRCVTCHKAKSKLNPHGLYTPLPVPSAPWEDISMD 1273

Query: 3796 FMLGLPRSKRGRDSVFVVVDRFSKMAHFIPCHNMNDASHVADL 3924
            F+LGLPR+KRGRDS+FVVVDRFSKMAHFIPCH  +DASH+A L
Sbjct: 1274 FVLGLPRTKRGRDSIFVVVDRFSKMAHFIPCHKSDDASHIASL 1316



 Score =  198 bits (503), Expect(3) = 0.0
 Identities = 97/189 (51%), Positives = 132/189 (69%), Gaps = 8/189 (4%)
 Frame = +2

Query: 4172 AYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSERVNLDGKKKAEFVKQIHEKARLNI 4351
            AYN  +HS T   PFE+VY F PL+P+DL PLP+ ER +++  K+A +VK+IHEK +  I
Sbjct: 1401 AYNRAVHSTTNMCPFEVVYGFKPLSPIDLLPLPLQERSDMEASKRATYVKKIHEKTKEAI 1460

Query: 4352 E*RTEQYAKQANKGRHKIVFEAEDWVWLHMRKERFPAQRRSKLLPRGDGPFQVLEHINDN 4531
            E R++ YA  ANK R K+ FE  D VW+H+RK+RFP +R+SKL+PRGDGPF+VL  INDN
Sbjct: 1461 EKRSKYYAAWANKNRKKVTFEPGDLVWVHLRKDRFPQKRKSKLMPRGDGPFRVLSKINDN 1520

Query: 4532 AYKLDLPGEYNVSATFNVSDLSPF---DVGDDWRTNPFQEEGNDANHGTVTRTQANK--- 4693
            AYK++LP +Y VS+TFNV+DL+PF   +  +  R+ PFQE  +D +  TV  T + K   
Sbjct: 1521 AYKIELPEDYGVSSTFNVADLTPFFGLEDSESSRSTPFQEGEDDEDIPTVHATSSTKQPS 1580

Query: 4694 --FKDALSG 4714
               KD + G
Sbjct: 1581 SNTKDTIQG 1589



 Score =  151 bits (382), Expect(3) = 0.0
 Identities = 70/83 (84%), Positives = 74/83 (89%)
 Frame = +3

Query: 3921 FVREIVRLHGMPRTIVPDRDAKFLSYFWKTLWCKLGTKLLFSTTCHPQTDGQMEVVNRTL 4100
            F  EIVRLHGMP+TIV DRD KFLSYFWKTLW KLGT+LLFSTTCHPQTDGQ EVVNRTL
Sbjct: 1317 FFSEIVRLHGMPKTIVSDRDTKFLSYFWKTLWAKLGTRLLFSTTCHPQTDGQTEVVNRTL 1376

Query: 4101 STLLWAIIKKNIKTWEECLPHVE 4169
            S LL A+IKKN+K WEECLPHVE
Sbjct: 1377 SMLLRALIKKNLKEWEECLPHVE 1399



 Score =  195 bits (495), Expect(2) = 2e-89
 Identities = 106/248 (42%), Positives = 140/248 (56%)
 Frame = +2

Query: 1073 DEAKNRVKKEATSHGNQGKSDSSTSRNHDIKCFKCQGRGHIASQCPNKRVMVLRXXXXXX 1252
            +E KN     +TS G+  KS         I+CFKC GRGH+A +CPN R +V+       
Sbjct: 364  NERKNAANTSSTSVGSSTKSSG-------IQCFKCGGRGHVARECPNNRTIVVNDQGEYE 416

Query: 1253 XXXXXXXXFMPPLEDANDKEYAAQGGDLLVARRALSVQAKEDGEVQLENIFHTRCHVQNK 1432
                          +        + G  LV  + LSVQ  +    Q  N+F TR  VQ+K
Sbjct: 417  STSEEEQEDSEEENNLEKDICEFESGAALVVTQILSVQMSDAENGQRHNLFQTRAKVQDK 476

Query: 1433 VCSVIIDGGSCTNVASTIMVEKLGLQTTKHPRPYKLQWLNDSGEVKVNKQVLVSFCIGKY 1612
            V  VIIDGGSC N+AS  MVEKLGL+  KHP PY +QWLN+SG +K+ ++V V F IG+Y
Sbjct: 477  VVKVIIDGGSCHNLASKEMVEKLGLKLLKHPHPYHVQWLNNSGSIKIAQRVKVPFKIGEY 536

Query: 1613 EDEVLCDVVPMQAGHLLLGRPWQFDRRVKHDGSTNKYSFVLNQRTITLVPLTPKQVHEDQ 1792
             D + CDV PM   H+LLGRPWQ+DR   H G TN+Y+     + + L P+TP+Q+  + 
Sbjct: 537  IDTMECDVAPMTVCHMLLGRPWQYDRSSLHCGRTNQYTIKWKGKELILKPMTPQQILAEH 596

Query: 1793 VILQKESE 1816
              LQK SE
Sbjct: 597  --LQKSSE 602



 Score =  165 bits (418), Expect(2) = 2e-89
 Identities = 86/217 (39%), Positives = 125/217 (57%), Gaps = 5/217 (2%)
 Frame = +3

Query: 396  DEGEDSTGSPRKFGRVRGARNREDNNLSSIKMKIPLFQGKNDPEAYLEWEKKVELVFDCH 575
            +E E      R+    RG     +     +K  +P F+G +DPE YL WE KV+ +F  H
Sbjct: 111  EEVEQPHRDDRRHRGNRGRNQPNEERFGKLKFTMPKFEGGSDPEVYLTWELKVDKIFRLH 170

Query: 576  NYSENKKVKLAAIEFSDYAFVW*DQLVLNRRRNRERPIETWEEMKTVMRKRFVPSYYYRE 755
            NYSE KKV +AA+EF  YA +W +Q++  R    +  + +W EMK  MR RFVP +Y R+
Sbjct: 171  NYSERKKVAMAALEFDGYALIWWEQMLNEREEAGQGDVRSWAEMKREMRARFVPKHYRRD 230

Query: 756  LYNKLQSLKQGNRSXXXXXXXXXXXXIRANVEEDREATMSRFLVGLNREIANAVELQHYV 935
            L++KLQ+LKQG+ S            IRANV ED E +++RF+ GL+R I   VE Q Y 
Sbjct: 231  LFDKLQNLKQGSLSVDEYYKEMEKAMIRANVYEDEEQSIARFMSGLHRNIQRIVEFQQYR 290

Query: 936  ELEDMVHMAIKIENQLKR-----RGSTCPSQNPSTSA 1031
             L ++VH A K E QL++     RG +  ++N ++ +
Sbjct: 291  NLIELVHQASKAERQLQQDMKSNRGVSFSTKNAASGS 327



 Score = 90.1 bits (222), Expect = 1e-14
 Identities = 43/78 (55%), Positives = 59/78 (75%)
 Frame = +3

Query: 1965 QPMIVLLYKEAYFNANQLNASLPSSVVSLLQDFDDIFPKEIPNGLPPIRGIEHQIDFVLG 2144
            Q + +L+ K+   +AN L  S+PS V  +LQ+++D+FP+E P GLPP+RGIEHQID + G
Sbjct: 660  QVLFILVCKDTLLSANDLT-SVPSVVARVLQEYEDVFPEETPVGLPPLRGIEHQIDLIPG 718

Query: 2145 ATIPN*PA*RSNPE*TKE 2198
            AT+PN PA R+NPE TKE
Sbjct: 719  ATLPNRPAYRTNPEETKE 736


>gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Japonica Group]
            gi|31431012|gb|AAP52850.1| retrotransposon protein,
            putative, Ty3-gypsy subclass [Oryza sativa Japonica
            Group]
          Length = 2447

 Score =  830 bits (2143), Expect(3) = 0.0
 Identities = 396/596 (66%), Positives = 480/596 (80%), Gaps = 1/596 (0%)
 Frame = +1

Query: 2149 PFQTDQLKGVTPSRQRKVIELMEKGYVRENMSPCAVLVILVPKKDRLWRMCVDCRAINNI 2328
            P++T+  +  T   QR+V EL++KGYVRE++SPCAV VILVPKKD  WRMCVDCRAINNI
Sbjct: 723  PYRTNPEE--TKEIQRQVHELLDKGYVRESLSPCAVPVILVPKKDGSWRMCVDCRAINNI 780

Query: 2329 MVKYRHPIPRLDDMLDELHGSCVFSKIDLKSEYHRIRMKEGDEWKTKFKTKYGLYE*LVM 2508
             ++YRHPIPRLDDMLDEL GS VFSK+DL+S YH+IRMK GDEWKT FKTK+GLYE LVM
Sbjct: 781  TIRYRHPIPRLDDMLDELSGSIVFSKVDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVM 840

Query: 2509 PFGLINATSTFMRLMNHVLRAFIENFVVIYFDDILIYSQNLDDHLMHLKLVLDVLRKEKL 2688
            PFGL NA STFMRLMN VLR FI  FVV+YFDDILIYS+++ +H  HL+ V + LR  +L
Sbjct: 841  PFGLTNAPSTFMRLMNEVLRPFIGKFVVVYFDDILIYSKSMGEHFNHLRAVFNALRDARL 900

Query: 2689 FANLKKCTFCTNKHVFLGFVTSTQGIQVDEEKIHAIQEWPSPTSVSNV*SFHGLASFYRR 2868
            F NL+KCTFCT++  FLG+V + QGI+VD+ K+ AIQ WP+P +VS V SF GLA FYRR
Sbjct: 901  FGNLEKCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIQSWPTPKTVSQVRSFLGLAGFYRR 960

Query: 2869 FVKDFNSIAAPITKVIKKNAGFKWGEEQEKAFQLIKQKLTHAPLHALPNFAKAFEIDCDA 3048
            FV+DF++IAAP+  + KK   F WG  QE AF ++K KLTHAPL  LP+F K FE++CDA
Sbjct: 961  FVQDFSTIAAPLNVLTKKGVPFTWGTSQENAFHMLKDKLTHAPLLQLPDFNKTFELECDA 1020

Query: 3049 LGLGIGVVLIQEGRPLAYFSEKLSGAALNYPTYDKEMYALVRSLETWQYYLWPKEFVIHI 3228
             G+G+G VL+QEG+P+AYFSEKLSG  LNY TYDKE+YALVR+LETWQ+YLWPKEFVIH 
Sbjct: 1021 SGIGLGGVLLQEGKPVAYFSEKLSGPVLNYSTYDKELYALVRTLETWQHYLWPKEFVIHS 1080

Query: 3229 DHESLKHLRGQHKLNKGRARWVEFFETFPYVIQYKQGKENIVADALSRRYILISTLDAKI 3408
            DHESLKH+R Q KLN+  A+WVEF E+FPYVI++K+GKENI+ADALSRRY L++ LD KI
Sbjct: 1081 DHESLKHIRSQGKLNRRHAKWVEFIESFPYVIKHKKGKENIIADALSRRYTLLTQLDYKI 1140

Query: 3409 LGFEHIKELYPLDHDFNEEYESCEE-TTNGKYFRHEGFLFRENKLCIPNCSVRDLLVRES 3585
             G E IK+ Y  D DFN+    C++  T  K+  ++GF+FR NKLCIP  SVR LL++E+
Sbjct: 1141 FGLETIKDQYAHDADFNDVLLHCKDGRTWNKFVINDGFVFRANKLCIPASSVRLLLLQEA 1200

Query: 3586 HGGGLMGHFGVAKTLAILQEHFYWPHMKRDVERICGRCVTCRQAKSRVPPHGLYTPLPIP 3765
            HGGGLMGHFG  KT  IL  HF+WP M+RDV R   RC TC++AKSR+ PHGLY PLP+P
Sbjct: 1201 HGGGLMGHFGAKKTHDILASHFFWPQMRRDVGRFVARCATCQKAKSRLHPHGLYMPLPVP 1260

Query: 3766 STPWIDISMDFMLGLPRSKRGRDSVFVVVDRFSKMAHFIPCHNMNDASHVADLLGR 3933
            + PW DISMDF+LGLPR+KRGRDS+FVVVDRFSKMAHFIPCH  +DASH+ADL  R
Sbjct: 1261 TVPWEDISMDFVLGLPRTKRGRDSIFVVVDRFSKMAHFIPCHKTDDASHIADLFFR 1316



 Score =  174 bits (440), Expect(3) = 0.0
 Identities = 85/170 (50%), Positives = 115/170 (67%), Gaps = 3/170 (1%)
 Frame = +2

Query: 4172 AYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSERVNLDGKKKAEFVKQIHEKARLNI 4351
            AYN ++HS TK  PF+IVY   P  P+DL PLP SE++N D K++AE + ++HE  + NI
Sbjct: 1398 AYNRSLHSTTKMCPFQIVYGLLPRAPIDLMPLPSSEKLNFDAKQRAELMLKLHETTKENI 1457

Query: 4352 E*RTEQYAKQANKGRHKIVFEAEDWVWLHMRKERFPAQRRSKLLPRGDGPFQVLEHINDN 4531
            E    +Y    +KGR ++ FE  D VWLH+RKERFP  R+SKL+PR DGPF+VL  IN+N
Sbjct: 1458 ERMNAKYKFAGDKGRRELTFEPGDLVWLHLRKERFPDLRKSKLMPRADGPFKVLAKINEN 1517

Query: 4532 AYKLDLPGEYNVSATFNVSDLSPFDVGDD---WRTNPFQEEGNDANHGTV 4672
            AYK+DLP ++ VS TFNV+DL P+   +D    RT   QE  +D +  T+
Sbjct: 1518 AYKIDLPADFGVSPTFNVADLKPYLGEEDELESRTTQMQEGEDDEDINTI 1567



 Score =  151 bits (381), Expect(3) = 0.0
 Identities = 68/83 (81%), Positives = 75/83 (90%)
 Frame = +3

Query: 3921 FVREIVRLHGMPRTIVPDRDAKFLSYFWKTLWCKLGTKLLFSTTCHPQTDGQMEVVNRTL 4100
            F REIVRLHG+P TIV DRD KFLS+FW+TLW KLGTKLLFSTTCHPQTDGQ EVVNRTL
Sbjct: 1314 FFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRTL 1373

Query: 4101 STLLWAIIKKNIKTWEECLPHVE 4169
            ST+L A++KKNIK WEECLPH+E
Sbjct: 1374 STMLRAVLKKNIKMWEECLPHIE 1396



 Score =  362 bits (930), Expect(3) = e-124
 Identities = 204/564 (36%), Positives = 314/564 (55%), Gaps = 33/564 (5%)
 Frame = +1

Query: 2332 VKYRHPIPRLDDMLDELHGSCVFSKIDLKSEYHRIRMKEGDEWKTKFK--TKYGLYE*LV 2505
            +++  PI R           C   ++D    +H+     GD+  T       YGLYE  V
Sbjct: 1575 IQHDGPITRARARQLNYQDECPRGRVDA---HHKFAATIGDDRATNPSGFASYGLYEFTV 1631

Query: 2506 MPFGLINATSTFMRLMNHVLRAFIENFVVIYFDDILIYSQNLDDHLMHLKLVLDVLRKEK 2685
            M FGL NA + FM LMN V   +++ FVV++ DDIL+YSQ+ +DH  HL+LVL  LR+ +
Sbjct: 1632 MSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILVYSQSEEDHQHHLRLVLGKLREHQ 1691

Query: 2686 LFANLKKCTFCTNKHVFLGFVTSTQGIQVDEEKIHAIQEWPSPTSVSNV*SFHGLASFYR 2865
            L+A L KC F  ++  FLG V S +G+ VD E + A+ +W  P +V+ + SF GLA +YR
Sbjct: 1692 LYAKLSKCEFWLSEVKFLGHVISAKGVAVDPETVTAVTDWKQPKTVTQIRSFLGLAGYYR 1751

Query: 2866 RFVKDFNSIAAPITKVIKKNAGFKWGEEQEKAFQLIKQKLTHAPLHALPNFAKAFEIDCD 3045
            RF+++F+ IA P+T+++KK   F W  + EKAFQ +K+KL  +P+  LP+  K F + CD
Sbjct: 1752 RFIENFSKIARPMTQLLKKEEKFVWSPQCEKAFQTLKEKLVSSPVLILPDTRKDFMVYCD 1811

Query: 3046 ALGLGIGVVLIQEGRPLAYFSEKLSGAALNYPTYDKEMYALVRSLETWQYYLWPKEFVIH 3225
            A   G+G VL+QEG  +AY S +L     NYPT+D E+ A+V +L+ W++YL      I+
Sbjct: 1812 ASPQGLGCVLMQEGHVVAYASRQLWPHEGNYPTHDLELAAVVHALKIWRHYLIGNRCEIY 1871

Query: 3226 IDHESLKHLRGQHKLNKGRARWVEFFETFPYVIQYKQGKENIVADALSRRYI-------- 3381
             DH+SLK++  Q  LN  + RW+E  + +   I Y  GK N+VADALSR+          
Sbjct: 1872 TDHKSLKYIFTQSDLNLRQRRWLELIKDYDVGIHYHPGKANVVADALSRKSHCNTLGVRG 1931

Query: 3382 --------------------LISTLDAKILGFEHIKELYPLDHDFNEEYESCEETTNGKY 3501
                                 ++TL+AK    + I+E    D D     ++ ++     +
Sbjct: 1932 IPPELNQQMEALNLSIVSRGFLATLEAKPTLLDQIREAQKNDPDMRGLLKNMKQGKAAGF 1991

Query: 3502 FRHE-GFLFRENKLCIPNC-SVRDLLVRESHGGGLMGHFGVAKTLAILQEHFYWPHMKRD 3675
               E G L+  N++C+P+   ++ L+++E+H      H G  K    L+E ++W  MKR+
Sbjct: 1992 IEDEHGTLWNRNRVCVPDVRELKQLILQEAHESPYSIHPGSTKMYLDLKEKYWWVSMKRE 2051

Query: 3676 VERICGRCVTCRQAKS-RVPPHGLYTPLPIPSTPWIDISMDFMLGLPRSKRGRDSVFVVV 3852
            +      C  C++ K+    P GL  PL +P   W +I MDF+ GLP+++ G DS++VVV
Sbjct: 2052 IAEFVALCDVCQRVKAEHQRPAGLLQPLQVPEWKWDEIGMDFITGLPKTQGGYDSIWVVV 2111

Query: 3853 DRFSKMAHFIPCHNMNDASHVADL 3924
            DR +K+A FIP       + +A+L
Sbjct: 2112 DRLTKVARFIPVKTTYGGNKLAEL 2135



 Score = 86.7 bits (213), Expect(3) = e-124
 Identities = 41/83 (49%), Positives = 57/83 (68%)
 Frame = +3

Query: 3921 FVREIVRLHGMPRTIVPDRDAKFLSYFWKTLWCKLGTKLLFSTTCHPQTDGQMEVVNRTL 4100
            +   IV LHG+P+ IV DR+++F S+FWK L  +LGT+L FST  HPQTDGQ E +N+ L
Sbjct: 2136 YFARIVSLHGVPKKIVSDRESQFTSHFWKKLQEELGTRLNFSTAYHPQTDGQTERLNQIL 2195

Query: 4101 STLLWAIIKKNIKTWEECLPHVE 4169
              +L A +    KTW++ LP+ E
Sbjct: 2196 EDMLHACVLDFGKTWDKSLPYAE 2218



 Score = 50.8 bits (120), Expect(3) = e-124
 Identities = 41/145 (28%), Positives = 71/145 (48%), Gaps = 4/145 (2%)
 Frame = +2

Query: 4172 AYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSERVNLDGKKKAEF-VKQIHEKARLN 4348
            +YN +  ++ +  P+E +Y     TPL    +  S+    D  ++AE  V+ I +    N
Sbjct: 2220 SYNNSYQASIQMAPYEALYGRKCRTPLLWDQVGESQVFGTDILREAEAKVRTIWD----N 2275

Query: 4349 IE*RTEQYAKQANKGRHKIVFEAEDWVWLHMRKER--FPAQRRSKLLPRGDGPFQVLEHI 4522
            ++    +    A+  R  + F  +D+V+L +   R     Q + KL PR  GPF+++   
Sbjct: 2276 LKVAQSRQKSYADNRRRNLEFAVDDFVYLRVTPLRGVHRFQTKGKLAPRFVGPFRIIARR 2335

Query: 4523 NDNAYKLDLPGEY-NVSATFNVSDL 4594
             + AY+L+LP    NV   F+VS L
Sbjct: 2336 GEVAYQLELPASLGNVHDVFHVSQL 2360



 Score =  190 bits (483), Expect(3) = e-105
 Identities = 100/248 (40%), Positives = 143/248 (57%), Gaps = 9/248 (3%)
 Frame = +2

Query: 1100 EATSHGNQGKSDSSTSRNHDIKCFKCQGRGHIASQCPNKRVMVLRXXXXXXXXXXXXXXF 1279
            +A        S +ST R  D++C +C+G GH+   CP+KRV+V++               
Sbjct: 370  KAAQPAPSASSMASTGRMRDVQCHRCKGFGHVQRDCPSKRVLVVKNDGEYSSASDFDDDT 429

Query: 1280 MPPLE-DANDKEYA--------AQGGDLLVARRALSVQAKEDGEVQLENIFHTRCHVQNK 1432
            +  L  D  D E          A   + L+ +R LS Q ++  + Q   +F T+C V+ +
Sbjct: 430  LALLAADHADNEPPEEHIGAAFADHYESLIVQRVLSAQMEKAEQNQRHTLFQTKCVVKER 489

Query: 1433 VCSVIIDGGSCTNVASTIMVEKLGLQTTKHPRPYKLQWLNDSGEVKVNKQVLVSFCIGKY 1612
             C +IIDGGSC N+AS+ MVEKL L T  HP PY +QWLN+SG+ KV K V ++F IG Y
Sbjct: 490  CCRMIIDGGSCNNLASSEMVEKLALSTKPHPHPYYIQWLNNSGKAKVTKLVHINFAIGNY 549

Query: 1613 EDEVLCDVVPMQAGHLLLGRPWQFDRRVKHDGSTNKYSFVLNQRTITLVPLTPKQVHEDQ 1792
             D V CDVVPMQA ++LLGRPWQFDR   H G +N+YSF+ + + I L  ++P+ +  D 
Sbjct: 550  HDVVECDVVPMQACNILLGRPWQFDRDSMHHGRSNQYSFLYHDKKIVLHSMSPEDILRDD 609

Query: 1793 VILQKESE 1816
            V    +S+
Sbjct: 610  VAKAAKSK 617



 Score =  157 bits (396), Expect(3) = e-105
 Identities = 83/206 (40%), Positives = 121/206 (58%)
 Frame = +3

Query: 435  GRVRGARNREDNNLSSIKMKIPLFQGKNDPEAYLEWEKKVELVFDCHNYSENKKVKLAAI 614
            GR R      D+  S IK KIP F GK DP+AYL WE  V+  F CH + E+ +V+ A  
Sbjct: 137  GRRRREVRNNDDAFSKIKFKIPPFDGKYDPDAYLSWEIAVDQKFACHEFPESTRVRAATS 196

Query: 615  EFSDYAFVW*DQLVLNRRRNRERPIETWEEMKTVMRKRFVPSYYYRELYNKLQSLKQGNR 794
            EF+D+A VW    + + ++N     +TW+ +K VMR RFVPSYY R+L N+LQ L+QG +
Sbjct: 197  EFTDFASVW---WIEHGKKNPNNMPQTWDALKRVMRARFVPSYYARDLLNRLQQLRQGAK 253

Query: 795  SXXXXXXXXXXXXIRANVEEDREATMSRFLVGLNREIANAVELQHYVELEDMVHMAIKIE 974
            S            +R N+EE  +A M+RFL GLNREI + V+ + Y  +  + H+A K E
Sbjct: 254  SVEEYYQELQMGLLRCNLEETEDAAMARFLGGLNREIYDIVDYKDYTNMTRLFHLACKAE 313

Query: 975  NQLKRRGSTCPSQNPSTSAWKSNHWK 1052
             +++ R +   S   + SA K++ W+
Sbjct: 314  REVQGRRA---SAKANFSAGKTSSWQ 336



 Score = 89.0 bits (219), Expect(3) = e-105
 Identities = 42/91 (46%), Positives = 61/91 (67%)
 Frame = +3

Query: 1926 AKASEIKRAMFSNQPMIVLLYKEAYFNANQLNASLPSSVVSLLQDFDDIFPKEIPNGLPP 2105
            A  S+I   + S      L+ K+A  + + +  SLP +V ++LQ++ D+FPKE+P GLPP
Sbjct: 643  ATKSDINELIASPSVAYALVCKDALISLHDMQHSLPPAVANILQEYSDVFPKEVPPGLPP 702

Query: 2106 IRGIEHQIDFVLGATIPN*PA*RSNPE*TKE 2198
            +RGIEHQID + GA++PN    R+NPE TKE
Sbjct: 703  VRGIEHQIDLIPGASLPNRAPYRTNPEETKE 733


>gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|15217296|gb|AAK92640.1|AC079634_1 Putative
            retroelement [Oryza sativa Japonica Group]
            gi|31431373|gb|AAP53161.1| retrotransposon protein,
            putative, Ty3-gypsy subclass [Oryza sativa Japonica
            Group]
          Length = 1708

 Score =  827 bits (2137), Expect(3) = 0.0
 Identities = 393/596 (65%), Positives = 481/596 (80%), Gaps = 1/596 (0%)
 Frame = +1

Query: 2149 PFQTDQLKGVTPSRQRKVIELMEKGYVRENMSPCAVLVILVPKKDRLWRMCVDCRAINNI 2328
            P++T+  +  T   QR+V EL++KGYVRE++SPC++ V+LVPKKD  WRMCVDCRAINNI
Sbjct: 751  PYRTNPEE--TKEIQRQVQELLDKGYVRESLSPCSIPVLLVPKKDGSWRMCVDCRAINNI 808

Query: 2329 MVKYRHPIPRLDDMLDELHGSCVFSKIDLKSEYHRIRMKEGDEWKTKFKTKYGLYE*LVM 2508
             ++YRHPIPRLDDMLDEL GS VFSKIDL+S YH+IRMK GDEWKT FKTK+GLYE LVM
Sbjct: 809  TIRYRHPIPRLDDMLDELSGSLVFSKIDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVM 868

Query: 2509 PFGLINATSTFMRLMNHVLRAFIENFVVIYFDDILIYSQNLDDHLMHLKLVLDVLRKEKL 2688
            PFGL NA STF+RLMN VLRAFI  FVV+YFDDILIYS++++DH  HL+ V D LR E+L
Sbjct: 869  PFGLTNAPSTFIRLMNEVLRAFIGRFVVVYFDDILIYSRSIEDHHGHLRAVFDALRDERL 928

Query: 2689 FANLKKCTFCTNKHVFLGFVTSTQGIQVDEEKIHAIQEWPSPTSVSNV*SFHGLASFYRR 2868
            F NL+KCTFCT++  FLG+V + QGI+VD+ K+ AI  WP PT+++ V SF GLA FYRR
Sbjct: 929  FGNLEKCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIHSWPVPTTITQVRSFLGLAGFYRR 988

Query: 2869 FVKDFNSIAAPITKVIKKNAGFKWGEEQEKAFQLIKQKLTHAPLHALPNFAKAFEIDCDA 3048
            FVKDF++IAAP+ ++ K+N  F W   Q  AF  +K KLTHAPL  LP+F K FE++CDA
Sbjct: 989  FVKDFSTIAAPLHELTKRNVTFTWAAAQRNAFDTLKDKLTHAPLLQLPDFNKTFELECDA 1048

Query: 3049 LGLGIGVVLIQEGRPLAYFSEKLSGAALNYPTYDKEMYALVRSLETWQYYLWPKEFVIHI 3228
             G+G+G VL+QEG+P+ YFSEKLSG +LNY TYDKE++ALVR+LETWQ+YLWPKEFVIH 
Sbjct: 1049 SGIGLGGVLLQEGKPIEYFSEKLSGPSLNYSTYDKELFALVRTLETWQHYLWPKEFVIHS 1108

Query: 3229 DHESLKHLRGQHKLNKGRARWVEFFETFPYVIQYKQGKENIVADALSRRYILISTLDAKI 3408
            DHESLKH+R Q KLN+  A+WVEF E+FPYVI++K+GKEN++ADALSRRY ++S LD KI
Sbjct: 1109 DHESLKHIRSQAKLNRRHAKWVEFIESFPYVIKHKKGKENVIADALSRRYAMLSQLDFKI 1168

Query: 3409 LGFEHIKELYPLDHDFNEEYESCEE-TTNGKYFRHEGFLFRENKLCIPNCSVRDLLVRES 3585
             G E IKE Y  D DF +   +C+E  T  K+    GF+FR NKLCIP  SVR LL++E+
Sbjct: 1169 FGLETIKEQYAHDDDFKDVLLNCKEGRTWNKFVLTNGFVFRANKLCIPASSVRMLLLQEA 1228

Query: 3586 HGGGLMGHFGVAKTLAILQEHFYWPHMKRDVERICGRCVTCRQAKSRVPPHGLYTPLPIP 3765
            HGGGLMGHFGV KT  IL +HF+WP M+RDVER   RC TC++AK R+ PHGLY PLP+P
Sbjct: 1229 HGGGLMGHFGVKKTEDILADHFFWPKMRRDVERFVARCTTCQKAKLRLNPHGLYMPLPVP 1288

Query: 3766 STPWIDISMDFMLGLPRSKRGRDSVFVVVDRFSKMAHFIPCHNMNDASHVADLLGR 3933
            S PW DISMDF+LGLPR+K+GRDS+FVVVDRFSKMAHFIPCH  +DA+HVADL  R
Sbjct: 1289 SVPWEDISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDATHVADLFFR 1344



 Score =  169 bits (428), Expect(3) = 0.0
 Identities = 91/196 (46%), Positives = 118/196 (60%), Gaps = 15/196 (7%)
 Frame = +2

Query: 4172 AYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSERVNLDGKKKAEFVKQIHEKARLNI 4351
            AYN + HS TK  PFEIVY   P  P+DL PLP SERVN D K  AE + ++HE  + NI
Sbjct: 1426 AYNRSQHSTTKKCPFEIVYGLLPRAPIDLLPLPTSERVNFDAKYHAELMLKLHETTKENI 1485

Query: 4352 E*RTEQYAKQANKGRHKIVFEAEDWVWLHMRKERFPAQRRSKLLPRGDGPFQVLEHINDN 4531
            E    +Y    +KG+  + FE  D VWLH+RK+RFP  R+SKLLPR DGPF+VL+ INDN
Sbjct: 1486 ERMNIKYKLAGSKGKKHVAFEPGDLVWLHLRKDRFPNLRKSKLLPRADGPFKVLQKINDN 1545

Query: 4532 AYKLDLPGEYNVSATFNVSDLSPFDVGDD---WRTNPFQEEGND------------ANHG 4666
             YKL+LP ++ VS TFN++DL P+   +D    RT   QE  +D            A  G
Sbjct: 1546 TYKLELPADFGVSPTFNIADLKPYLGEEDELESRTTQMQEGEDDEDIPSNDTTTPIAQQG 1605

Query: 4667 TVTRTQANKFKDALSG 4714
             +TR +A +    + G
Sbjct: 1606 PMTRARARELNYQVQG 1621



 Score =  151 bits (382), Expect(3) = 0.0
 Identities = 69/83 (83%), Positives = 75/83 (90%)
 Frame = +3

Query: 3921 FVREIVRLHGMPRTIVPDRDAKFLSYFWKTLWCKLGTKLLFSTTCHPQTDGQMEVVNRTL 4100
            F REIVRLHG+P TIV DRD KFLS+FW+TLW KLGTKLLFSTTCHPQTDGQ EVVNRTL
Sbjct: 1342 FFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRTL 1401

Query: 4101 STLLWAIIKKNIKTWEECLPHVE 4169
            ST+L A++KKNIK WEECLPHVE
Sbjct: 1402 STMLRAVLKKNIKMWEECLPHVE 1424



 Score =  191 bits (484), Expect(3) = e-102
 Identities = 102/253 (40%), Positives = 145/253 (57%), Gaps = 13/253 (5%)
 Frame = +2

Query: 1103 ATSHGNQGKSDSSTSRNHDIKCFKCQGRGHIASQCPNKRVMVLRXXXXXXXXXXXXXXFM 1282
            A +      S +S+ R  DI+C +C+G GH+   CP+ RVM++R                
Sbjct: 378  AATPSKSSSSVASSGRTRDIQCLRCKGYGHVRKDCPSTRVMIVRADGGYSSASDLDEETY 437

Query: 1283 PPLEDAN---------DKEY----AAQGGDLLVARRALSVQAKEDGEVQLENIFHTRCHV 1423
              L   N         D+E+    AA+  + LV +R LS Q +   + Q   +F T+C +
Sbjct: 438  ALLATNNAGKGDAPHQDEEHIGAEAAEHYESLVVQRVLSAQMERAEQNQRHTLFQTKCVI 497

Query: 1424 QNKVCSVIIDGGSCTNVASTIMVEKLGLQTTKHPRPYKLQWLNDSGEVKVNKQVLVSFCI 1603
            + + C VIID GSC N+AS  MVEKL L T  HP+PY +QWLN SG+VKV + V V F I
Sbjct: 498  KERSCRVIIDRGSCNNLASAEMVEKLALSTQPHPQPYYIQWLNSSGKVKVTRLVRVHFAI 557

Query: 1604 GKYEDEVLCDVVPMQAGHLLLGRPWQFDRRVKHDGSTNKYSFVLNQRTITLVPLTPKQVH 1783
            G Y D + CDVVPMQA  + LGRPWQFD+   H G +N+YSFV N + + L P++P+ + 
Sbjct: 558  GSYHDSINCDVVPMQACSIFLGRPWQFDKDSLHFGKSNQYSFVHNGKKLVLHPMSPEVIL 617

Query: 1784 EDQVILQKESEKK 1822
            +D+  L + S++K
Sbjct: 618  KDE--LARASKQK 628



 Score =  147 bits (372), Expect(3) = e-102
 Identities = 76/195 (38%), Positives = 116/195 (59%)
 Frame = +3

Query: 465  DNNLSSIKMKIPLFQGKNDPEAYLEWEKKVELVFDCHNYSENKKVKLAAIEFSDYAFVW* 644
            D++L  IK  IP F  K DP+AYL WE  ++  F CH++ ENK+V+ A  EF+D+A +W 
Sbjct: 149  DDSLGKIKFTIPCFDEKYDPDAYLTWELAIDQKFACHDFPENKRVRAATSEFTDFASIWW 208

Query: 645  DQLVLNRRRNRERPIETWEEMKTVMRKRFVPSYYYRELYNKLQSLKQGNRSXXXXXXXXX 824
             + V   R N     +TW+ MK VMR RFVPSY+ R+L +KLQ L+QGN+S         
Sbjct: 209  SEFV---RSNPNNTPQTWDAMKRVMRARFVPSYHARDLLHKLQQLRQGNKSVEEYYQALQ 265

Query: 825  XXXIRANVEEDREATMSRFLVGLNREIANAVELQHYVELEDMVHMAIKIENQLKRRGSTC 1004
               +R  + E+ +A M+RF+ GLNREI + +  + Y  +  + H+A K E +++ R +  
Sbjct: 266  TGMLRCGLVENDDAGMARFMGGLNREIQDILAYKEYNSINRLFHLACKAEREVQGRRA-- 323

Query: 1005 PSQNPSTSAWKSNHW 1049
             S   + SA +++ W
Sbjct: 324  -SFRTNISAGRASSW 337



 Score = 86.3 bits (212), Expect(3) = e-102
 Identities = 49/108 (45%), Positives = 60/108 (55%), Gaps = 3/108 (2%)
 Frame = +3

Query: 1884 SANERKTERKTN---FYAKASEIKRAMFSNQPMIVLLYKEAYFNANQLNASLPSSVVSLL 2054
            S    K E K     F A  S++            L+ KE  F       SLP  V +LL
Sbjct: 654  SVQNNKNEIKLKGSCFIATKSDLDEVDTDTVVCYALVCKETLFPIEDTPISLPPPVTNLL 713

Query: 2055 QDFDDIFPKEIPNGLPPIRGIEHQIDFVLGATIPN*PA*RSNPE*TKE 2198
            Q++ DIFPKE+P GLPPIRGIEHQID + GA++PN    R+NPE TKE
Sbjct: 714  QEYADIFPKEVPPGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKE 761


>gb|AAM94350.1| gag-pol polyprotein [Zea mays]
          Length = 1618

 Score =  826 bits (2133), Expect(3) = 0.0
 Identities = 392/596 (65%), Positives = 482/596 (80%), Gaps = 1/596 (0%)
 Frame = +1

Query: 2149 PFQTDQLKGVTPSRQRKVIELMEKGYVRENMSPCAVLVILVPKKDRLWRMCVDCRAINNI 2328
            P++T+  +  T   QR+V EL++KGYVRE++SPCAV VILVPKKD  WRMCVDCRAINNI
Sbjct: 726  PYRTNPEE--TKEIQRQVQELLDKGYVRESLSPCAVPVILVPKKDGTWRMCVDCRAINNI 783

Query: 2329 MVKYRHPIPRLDDMLDELHGSCVFSKIDLKSEYHRIRMKEGDEWKTKFKTKYGLYE*LVM 2508
             ++YRHPIPRLDDMLDEL G+ VFSK+DL+S YH+IRMK GDEWKT FKTK+GLYE LVM
Sbjct: 784  TIRYRHPIPRLDDMLDELSGAIVFSKVDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVM 843

Query: 2509 PFGLINATSTFMRLMNHVLRAFIENFVVIYFDDILIYSQNLDDHLMHLKLVLDVLRKEKL 2688
            PFGL NA STFMRLMN VLRAFI  FVV+YFDDILIYS+++D+H+ H++ V + LR  +L
Sbjct: 844  PFGLTNAPSTFMRLMNEVLRAFIGKFVVVYFDDILIYSKSMDEHVDHMRAVFNALRDARL 903

Query: 2689 FANLKKCTFCTNKHVFLGFVTSTQGIQVDEEKIHAIQEWPSPTSVSNV*SFHGLASFYRR 2868
            F NL+KCTFCT++  FLG+V + QGI+VD+ K+ AI  WP P +++ V SF GLA FYRR
Sbjct: 904  FGNLEKCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIHGWPMPKTITQVRSFLGLAGFYRR 963

Query: 2869 FVKDFNSIAAPITKVIKKNAGFKWGEEQEKAFQLIKQKLTHAPLHALPNFAKAFEIDCDA 3048
            FVKDF++IAAP+ ++ KK   F WG+ QE AF ++K KLTHAPL  LP+F K FE++CDA
Sbjct: 964  FVKDFSTIAAPLNELTKKGVHFSWGKVQEHAFNVLKDKLTHAPLLQLPDFNKTFELECDA 1023

Query: 3049 LGLGIGVVLIQEGRPLAYFSEKLSGAALNYPTYDKEMYALVRSLETWQYYLWPKEFVIHI 3228
             G+G+G VL+QEG+P+AYFSEKLSG+ LNY TYDKE+YALVR+LETWQ+YLWPKEFVIH 
Sbjct: 1024 SGIGLGGVLLQEGKPVAYFSEKLSGSVLNYSTYDKELYALVRTLETWQHYLWPKEFVIHS 1083

Query: 3229 DHESLKHLRGQHKLNKGRARWVEFFETFPYVIQYKQGKENIVADALSRRYILISTLDAKI 3408
            DHESLKH+R Q KLN+  A+WVEF E+FPYVI++K+GKENI+ADALSRRY L++ LD KI
Sbjct: 1084 DHESLKHIRSQGKLNRRHAKWVEFIESFPYVIKHKKGKENIIADALSRRYTLLNQLDYKI 1143

Query: 3409 LGFEHIKELYPLDHDFNEEYESCEETTN-GKYFRHEGFLFRENKLCIPNCSVRDLLVRES 3585
             G E IK+ Y  D DF +    C++     KY   +GF+FR NKLCIP  SVR LL++E+
Sbjct: 1144 FGLETIKDQYVHDADFKDVLLHCKDGKGWNKYIVSDGFVFRANKLCIPASSVRLLLLQEA 1203

Query: 3586 HGGGLMGHFGVAKTLAILQEHFYWPHMKRDVERICGRCVTCRQAKSRVPPHGLYTPLPIP 3765
            HGGGLMGHFG  KT  IL  HF+WP M+RDV R+  RC TC++AKSR+ PHGLY PLP+P
Sbjct: 1204 HGGGLMGHFGAKKTEDILAGHFFWPKMRRDVVRLVARCTTCQKAKSRLNPHGLYLPLPVP 1263

Query: 3766 STPWIDISMDFMLGLPRSKRGRDSVFVVVDRFSKMAHFIPCHNMNDASHVADLLGR 3933
            S PW DISMDF+LGLPR+++GRDSVFVVVDRFSKMAHFIPCH  +DA+H+ADL  R
Sbjct: 1264 SAPWEDISMDFVLGLPRTRKGRDSVFVVVDRFSKMAHFIPCHKTDDATHIADLFFR 1319



 Score =  177 bits (450), Expect(3) = 0.0
 Identities = 94/213 (44%), Positives = 128/213 (60%), Gaps = 17/213 (7%)
 Frame = +2

Query: 4172 AYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSERVNLDGKKKAEFVKQIHEKARLNI 4351
            AYN ++HS TK  PF+IVY   P  P+DL PLP SE++N D  ++AE + ++HE  + NI
Sbjct: 1401 AYNRSLHSTTKMCPFQIVYGLLPRAPIDLMPLPSSEKLNFDATRRAELMLKLHETTKENI 1460

Query: 4352 E*RTEQYAKQANKGRHKIVFEAEDWVWLHMRKERFPAQRRSKLLPRGDGPFQVLEHINDN 4531
            E    +Y   ++KGR +I FE  D VWLH+RKERFP  R+SKLLPR DGPF+VLE INDN
Sbjct: 1461 ERMNARYKFASDKGRKEINFEPGDLVWLHLRKERFPELRKSKLLPRADGPFKVLEKINDN 1520

Query: 4532 AYKLDLPGEYNVSATFNVSDLSPF---DVGDDWRTNPFQEEGNDAN-------------- 4660
            AY+LDLP ++ VS TFN++DL P+   +V  + RT   QE  ND +              
Sbjct: 1521 AYRLDLPADFGVSPTFNIADLKPYLGEEVELESRTTQMQEGENDEDIHTTDASIPIQVPI 1580

Query: 4661 HGTVTRTQANKFKDALSGLIQKVWNQTYMWSSV 4759
             G +TR +A +    +  L+    +    W  V
Sbjct: 1581 SGPITRARARQLNHQVITLLSSCPSYLEPWRPV 1613



 Score =  151 bits (382), Expect(3) = 0.0
 Identities = 68/83 (81%), Positives = 76/83 (91%)
 Frame = +3

Query: 3921 FVREIVRLHGMPRTIVPDRDAKFLSYFWKTLWCKLGTKLLFSTTCHPQTDGQMEVVNRTL 4100
            F REIVRLHG+P TIV DRDAKFLS+FW+TLW KLGTKLLFSTTCHPQTDGQ EVVNRTL
Sbjct: 1317 FFREIVRLHGVPNTIVSDRDAKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRTL 1376

Query: 4101 STLLWAIIKKNIKTWEECLPHVE 4169
            ST+L A++KKNIK WE+CLPH+E
Sbjct: 1377 STMLRAVLKKNIKMWEDCLPHIE 1399



 Score =  197 bits (502), Expect(2) = 4e-87
 Identities = 100/247 (40%), Positives = 144/247 (58%), Gaps = 10/247 (4%)
 Frame = +2

Query: 1085 NRVKKEATSHGNQGKSDSSTSRNHDIKCFKCQGRGHIASQCPNKRVMVLRXXXXXXXXXX 1264
            N   K A        S +ST R  D+ C++C+G GH+   CPN+RV+V++          
Sbjct: 367  NSATKSAQKPAGSASSVASTGRTRDVLCYRCKGYGHVQRDCPNQRVLVVKDDGGYSSASD 426

Query: 1265 XXXXFMPPL--EDANDKEYA--------AQGGDLLVARRALSVQAKEDGEVQLENIFHTR 1414
                 +  L  +DA  KE          A+  + L+ +R LS Q ++  + Q   +F T+
Sbjct: 427  LDEATLALLAADDAGTKEPPEEQIGADDAEHYESLIVQRVLSAQMEKAEQNQRHTLFQTK 486

Query: 1415 CHVQNKVCSVIIDGGSCTNVASTIMVEKLGLQTTKHPRPYKLQWLNDSGEVKVNKQVLVS 1594
            C ++ + C +IIDGGSC N+AS+ MVEKL L T  HP PY +QWLN+SG+VKV K V ++
Sbjct: 487  CVIKERSCRLIIDGGSCNNLASSDMVEKLALTTKPHPHPYHIQWLNNSGKVKVTKLVRIN 546

Query: 1595 FCIGKYEDEVLCDVVPMQAGHLLLGRPWQFDRRVKHDGSTNKYSFVLNQRTITLVPLTPK 1774
            F IG Y D V CDVVPM A ++LLGRPWQFD    H G +N+YS + + + I L+P++P+
Sbjct: 547  FAIGSYRDVVDCDVVPMDACNILLGRPWQFDSDCMHHGRSNQYSLIHHDKKIILLPMSPE 606

Query: 1775 QVHEDQV 1795
             +  D V
Sbjct: 607  AIVRDDV 613



 Score =  154 bits (390), Expect(2) = 4e-87
 Identities = 78/197 (39%), Positives = 118/197 (59%)
 Frame = +3

Query: 465  DNNLSSIKMKIPLFQGKNDPEAYLEWEKKVELVFDCHNYSENKKVKLAAIEFSDYAFVW* 644
            D+  S +K KIP F GK DP+AY+ WE  V+  F CH + EN +V+ A  EF+++A VW 
Sbjct: 141  DDAFSKVKFKIPPFDGKYDPDAYITWEIAVDQKFACHEFPENARVRAATSEFTEFASVW- 199

Query: 645  DQLVLNRRRNRERPIETWEEMKTVMRKRFVPSYYYRELYNKLQSLKQGNRSXXXXXXXXX 824
               + + ++N     +TW+ +K VMR RFVPSYY R++ NKLQ L+QG +S         
Sbjct: 200  --WIEHGKKNPNNMPQTWDALKRVMRARFVPSYYARDMLNKLQQLRQGTKSVEEYYQELQ 257

Query: 825  XXXIRANVEEDREATMSRFLVGLNREIANAVELQHYVELEDMVHMAIKIENQLKRRGSTC 1004
               +R N+EE  E+ M+RFL GLNREI + +  + Y  +  + H+A K E +++ R ++ 
Sbjct: 258  MGMLRCNIEEGEESAMARFLGGLNREIQDILAYKDYANVTRLFHLACKAEREVQGRRASA 317

Query: 1005 PSQNPSTSAWKSNHWKK 1055
             S   + SA KS  W++
Sbjct: 318  RS---NVSAGKSTPWQQ 331



 Score = 85.1 bits (209), Expect = 3e-13
 Identities = 40/91 (43%), Positives = 57/91 (62%)
 Frame = +3

Query: 1926 AKASEIKRAMFSNQPMIVLLYKEAYFNANQLNASLPSSVVSLLQDFDDIFPKEIPNGLPP 2105
            A  +++     S      L+ K+A  +   +  SLP  + ++LQ++ D+FP EIP GLPP
Sbjct: 646  ATKTDVNELFASTTVAYALVCKDALISIQDMQHSLPPVITNILQEYSDVFPSEIPEGLPP 705

Query: 2106 IRGIEHQIDFVLGATIPN*PA*RSNPE*TKE 2198
            IRGIEHQID + GA++PN    R+NPE TKE
Sbjct: 706  IRGIEHQIDLIPGASLPNRAPYRTNPEETKE 736


>gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|91795218|gb|ABE60890.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1616

 Score =  826 bits (2133), Expect(3) = 0.0
 Identities = 395/596 (66%), Positives = 479/596 (80%), Gaps = 1/596 (0%)
 Frame = +1

Query: 2149 PFQTDQLKGVTPSRQRKVIELMEKGYVRENMSPCAVLVILVPKKDRLWRMCVDCRAINNI 2328
            P++T+  +  T   QR+V EL++KGYVRE++SPC+V V+LVPKKD  WRMCVDCRAINNI
Sbjct: 751  PYRTNPEE--TKEIQRQVQELLDKGYVRESLSPCSVPVLLVPKKDGSWRMCVDCRAINNI 808

Query: 2329 MVKYRHPIPRLDDMLDELHGSCVFSKIDLKSEYHRIRMKEGDEWKTKFKTKYGLYE*LVM 2508
             ++YRHPIPRLDDMLDEL GS VFSKIDL+S YH+IRMK GDEWKT FKTK+GLYE LVM
Sbjct: 809  TIRYRHPIPRLDDMLDELSGSLVFSKIDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVM 868

Query: 2509 PFGLINATSTFMRLMNHVLRAFIENFVVIYFDDILIYSQNLDDHLMHLKLVLDVLRKEKL 2688
            PFGL NA STFMRLMN VLRAFI  FVV+YFDDILIYS++++DH  HL+ V D LR  +L
Sbjct: 869  PFGLTNAPSTFMRLMNEVLRAFIGRFVVVYFDDILIYSRSIEDHHGHLRAVFDALRDARL 928

Query: 2689 FANLKKCTFCTNKHVFLGFVTSTQGIQVDEEKIHAIQEWPSPTSVSNV*SFHGLASFYRR 2868
            F NL+KCTFCT++  FL +V + QGI+VD+ K+ AI  WP PT+++ V SF GLA FYRR
Sbjct: 929  FGNLEKCTFCTDRVSFLSYVVTPQGIEVDQAKVEAIHNWPVPTTITQVRSFLGLAGFYRR 988

Query: 2869 FVKDFNSIAAPITKVIKKNAGFKWGEEQEKAFQLIKQKLTHAPLHALPNFAKAFEIDCDA 3048
            FVKDF++IAAP+ ++ K+N  F W   Q  AF  +K KLTHAPL  LP+F K FE +CDA
Sbjct: 989  FVKDFSTIAAPLHELTKRNVTFTWAAAQRNAFDTLKDKLTHAPLLQLPDFNKTFEHECDA 1048

Query: 3049 LGLGIGVVLIQEGRPLAYFSEKLSGAALNYPTYDKEMYALVRSLETWQYYLWPKEFVIHI 3228
             G+G+G VL+QEG+P+AYFSEKLSG +LNY TYDKE++ALVR+LETWQ+YLWPKEFVIH 
Sbjct: 1049 SGIGLGGVLLQEGKPVAYFSEKLSGPSLNYSTYDKELFALVRTLETWQHYLWPKEFVIHS 1108

Query: 3229 DHESLKHLRGQHKLNKGRARWVEFFETFPYVIQYKQGKENIVADALSRRYILISTLDAKI 3408
            DHESLKH+R Q KLN+  A+WVEF E+FPYVI++K+GKEN++ADALSRRY ++S LD KI
Sbjct: 1109 DHESLKHIRSQAKLNRRHAKWVEFIESFPYVIKHKKGKENVIADALSRRYAMLSQLDFKI 1168

Query: 3409 LGFEHIKELYPLDHDFNEEYESCEE-TTNGKYFRHEGFLFRENKLCIPNCSVRDLLVRES 3585
             G E IKE Y  D DF     +C+E  T  K+    GF+FR NKLCIP  SVR LL++E+
Sbjct: 1169 FGLETIKEQYAHDDDFKNVLLNCKEGRTWNKFVLTNGFVFRANKLCIPASSVRMLLLQEA 1228

Query: 3586 HGGGLMGHFGVAKTLAILQEHFYWPHMKRDVERICGRCVTCRQAKSRVPPHGLYTPLPIP 3765
            HGGGLMGHFGV KT  IL +HF+WP M+RDVER   RC TC++AKSR+ PHGLY PLP+P
Sbjct: 1229 HGGGLMGHFGVKKTEDILADHFFWPKMRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVP 1288

Query: 3766 STPWIDISMDFMLGLPRSKRGRDSVFVVVDRFSKMAHFIPCHNMNDASHVADLLGR 3933
            S PW DISMDF+LGLPR+K+GRDS+FVVVDRFSKMAHFIPCH  +DA+HVADL  R
Sbjct: 1289 SVPWEDISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDATHVADLFFR 1344



 Score =  168 bits (426), Expect(3) = 0.0
 Identities = 90/189 (47%), Positives = 118/189 (62%), Gaps = 15/189 (7%)
 Frame = +2

Query: 4172 AYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSERVNLDGKKKAEFVKQIHEKARLNI 4351
            AYN + HS TK  PFEIVY   P  P+DL P P SERVN D K +AE + ++HE  + NI
Sbjct: 1426 AYNRSQHSTTKKCPFEIVYGLLPRAPIDLLPHPTSERVNFDAKYRAELMLKLHETTKENI 1485

Query: 4352 E*RTEQYAKQANKGRHKIVFEAEDWVWLHMRKERFPAQRRSKLLPRGDGPFQVLEHINDN 4531
            E    +Y    +KG+  + FE  D VWLH+RK+RFP  R+SKLLPR DGPF+VL+ INDN
Sbjct: 1486 ERMNIKYKLAGSKGKKHVAFEPGDLVWLHLRKDRFPNLRKSKLLPRADGPFKVLQKINDN 1545

Query: 4532 AYKLDLPGEYNVSATFNVSDLSPFDVGDD---WRTNPFQEEGND------------ANHG 4666
            AYKL+LP ++ VS TFN++DL P+   +D    RT   QE  +D            A  G
Sbjct: 1546 AYKLELPADFGVSPTFNIADLKPYLGEEDELESRTTQMQEGEDDEDIPSNDTSTPIAQQG 1605

Query: 4667 TVTRTQANK 4693
             +TR +A++
Sbjct: 1606 PMTRARAHE 1614



 Score =  150 bits (378), Expect(3) = 0.0
 Identities = 68/83 (81%), Positives = 74/83 (89%)
 Frame = +3

Query: 3921 FVREIVRLHGMPRTIVPDRDAKFLSYFWKTLWCKLGTKLLFSTTCHPQTDGQMEVVNRTL 4100
            F REIVRLHG+P TIV DRD KFLS+FW+TLW KLGTK LFSTTCHPQTDGQ EVVNRTL
Sbjct: 1342 FFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKFLFSTTCHPQTDGQTEVVNRTL 1401

Query: 4101 STLLWAIIKKNIKTWEECLPHVE 4169
            ST+L A++KKNIK WEECLPHVE
Sbjct: 1402 STMLRAVLKKNIKMWEECLPHVE 1424



 Score =  195 bits (495), Expect(3) = e-104
 Identities = 103/253 (40%), Positives = 145/253 (57%), Gaps = 13/253 (5%)
 Frame = +2

Query: 1103 ATSHGNQGKSDSSTSRNHDIKCFKCQGRGHIASQCPNKRVMVLRXXXXXXXXXXXXXXFM 1282
            A +      S +S+ R  DI+C +C+G GH+   CP+ RVM++R                
Sbjct: 378  AATPSKTSSSVASSGRTRDIQCLRCKGYGHVRKDCPSTRVMIVRADGGYSSASDLDGETY 437

Query: 1283 PPLEDANDKE-------------YAAQGGDLLVARRALSVQAKEDGEVQLENIFHTRCHV 1423
              L   N +E              AA+  + LV +R LS Q +   + Q   +F T+C +
Sbjct: 438  ALLATNNAREGDAPHQDEEHIGAEAAEHYESLVVQRVLSAQMERAEQNQRHTLFQTKCVI 497

Query: 1424 QNKVCSVIIDGGSCTNVASTIMVEKLGLQTTKHPRPYKLQWLNDSGEVKVNKQVLVSFCI 1603
            + + C VIIDGGSC N+AS  MVEKL L T  HP+PY +QWLN SG+VKV + V V F I
Sbjct: 498  KERSCRVIIDGGSCNNLASAEMVEKLALSTQPHPQPYYIQWLNSSGKVKVTRLVRVHFAI 557

Query: 1604 GKYEDEVLCDVVPMQAGHLLLGRPWQFDRRVKHDGSTNKYSFVLNQRTITLVPLTPKQVH 1783
            G Y D + CDVVPMQA  +LLGRPWQFD+   H G +N+YSFV N + + L P++P+ + 
Sbjct: 558  GSYHDSINCDVVPMQACSMLLGRPWQFDKDSLHFGKSNQYSFVHNGKKLVLHPMSPEVIL 617

Query: 1784 EDQVILQKESEKK 1822
            +D+  L + S++K
Sbjct: 618  KDE--LARASKQK 628



 Score =  149 bits (376), Expect(3) = e-104
 Identities = 77/195 (39%), Positives = 116/195 (59%)
 Frame = +3

Query: 465  DNNLSSIKMKIPLFQGKNDPEAYLEWEKKVELVFDCHNYSENKKVKLAAIEFSDYAFVW* 644
            D++L  IK  IP F GK DP+AYL WE  ++  F CH++ ENK V+ A  EF+D+A +W 
Sbjct: 149  DDSLGKIKFTIPCFDGKYDPDAYLTWELAIDQKFACHDFPENKCVRAATSEFTDFASIWW 208

Query: 645  DQLVLNRRRNRERPIETWEEMKTVMRKRFVPSYYYRELYNKLQSLKQGNRSXXXXXXXXX 824
             + V   R N     +TW+ MK VMR RFVPSY+ R+L +KLQ L+QGN+S         
Sbjct: 209  SEFV---RSNPNNTPQTWDAMKRVMRARFVPSYHARDLLHKLQQLRQGNKSVEEYYQALQ 265

Query: 825  XXXIRANVEEDREATMSRFLVGLNREIANAVELQHYVELEDMVHMAIKIENQLKRRGSTC 1004
               +R  + E+ +A M+RF+ GLNREI + +  + Y  +  + H+A K E +++ R +  
Sbjct: 266  TGMLRCGLVENDDAGMARFMGGLNREIQDILTYKEYNSINHLFHLACKAEREVQGRRA-- 323

Query: 1005 PSQNPSTSAWKSNHW 1049
             S   + SA +++ W
Sbjct: 324  -SFRTNISAGRASSW 337



 Score = 86.3 bits (212), Expect(3) = e-104
 Identities = 49/108 (45%), Positives = 60/108 (55%), Gaps = 3/108 (2%)
 Frame = +3

Query: 1884 SANERKTERKTN---FYAKASEIKRAMFSNQPMIVLLYKEAYFNANQLNASLPSSVVSLL 2054
            S    K E K     F A  S++            L+ KE  F       SLP  V +LL
Sbjct: 654  SVQNNKNEIKLKGSCFIATKSDLDEVDTDTVVCYALVCKETLFPIEDTPISLPPPVTNLL 713

Query: 2055 QDFDDIFPKEIPNGLPPIRGIEHQIDFVLGATIPN*PA*RSNPE*TKE 2198
            Q++ DIFPKE+P GLPPIRGIEHQID + GA++PN    R+NPE TKE
Sbjct: 714  QEYADIFPKEVPPGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKE 761


>dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]
          Length = 1587

 Score =  822 bits (2122), Expect(3) = 0.0
 Identities = 392/596 (65%), Positives = 478/596 (80%), Gaps = 1/596 (0%)
 Frame = +1

Query: 2149 PFQTDQLKGVTPSRQRKVIELMEKGYVRENMSPCAVLVILVPKKDRLWRMCVDCRAINNI 2328
            P++T+  +  T   QR+V EL++KGYVRE++SPC+V V+LVPKKD  WRMCVDCRAINNI
Sbjct: 751  PYRTNPEE--TKEIQRQVQELLDKGYVRESLSPCSVPVLLVPKKDGSWRMCVDCRAINNI 808

Query: 2329 MVKYRHPIPRLDDMLDELHGSCVFSKIDLKSEYHRIRMKEGDEWKTKFKTKYGLYE*LVM 2508
             ++YRHPIPRLDDMLDEL GS VFSKIDL+S YH+IRMK GDEWKT FKTK+GLYE LVM
Sbjct: 809  TIRYRHPIPRLDDMLDELSGSLVFSKIDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVM 868

Query: 2509 PFGLINATSTFMRLMNHVLRAFIENFVVIYFDDILIYSQNLDDHLMHLKLVLDVLRKEKL 2688
            PFGL NA STFMRLMN VLRAFI  FVV+YFDDILIYS++++DH  HL+ V D LR  +L
Sbjct: 869  PFGLTNAPSTFMRLMNEVLRAFIGRFVVVYFDDILIYSRSIEDHHGHLRAVFDALRDARL 928

Query: 2689 FANLKKCTFCTNKHVFLGFVTSTQGIQVDEEKIHAIQEWPSPTSVSNV*SFHGLASFYRR 2868
            F NL+KCTFCT++  FLG+V + QGI+VD+ K+ AI  WP PT+++ V SF GLA FYRR
Sbjct: 929  FGNLEKCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIHSWPVPTTITQVRSFLGLAGFYRR 988

Query: 2869 FVKDFNSIAAPITKVIKKNAGFKWGEEQEKAFQLIKQKLTHAPLHALPNFAKAFEIDCDA 3048
            FVKDF++IAAP+ ++ K+N  F W   Q  AF  +K KLTHAPL  LP+F K FE++CDA
Sbjct: 989  FVKDFSTIAAPLHELTKRNVTFTWAAAQRNAFDTLKDKLTHAPLLQLPDFNKTFELECDA 1048

Query: 3049 LGLGIGVVLIQEGRPLAYFSEKLSGAALNYPTYDKEMYALVRSLETWQYYLWPKEFVIHI 3228
             G+G+G VL+QEG+P+AYFSEKLSG +LNY TYDKE++ALVR+LETWQ+YLWPKEFVIH 
Sbjct: 1049 SGIGLGGVLLQEGKPVAYFSEKLSGPSLNYSTYDKELFALVRTLETWQHYLWPKEFVIHS 1108

Query: 3229 DHESLKHLRGQHKLNKGRARWVEFFETFPYVIQYKQGKENIVADALSRRYILISTLDAKI 3408
            DHESLKH+R Q K N+  A+WVEF E+FPYVI++K+GKEN++ADALSRRY ++S LD KI
Sbjct: 1109 DHESLKHIRSQAKHNRRHAKWVEFIESFPYVIKHKKGKENVIADALSRRYAMLSQLDFKI 1168

Query: 3409 LGFEHIKELYPLDHDFNEEYESCEE-TTNGKYFRHEGFLFRENKLCIPNCSVRDLLVRES 3585
             G E IKE Y  D DF +   +C+E  T  K+    GF+FR NKLCIP  SV  LL++E+
Sbjct: 1169 FGLETIKEQYAHDDDFKDVLLNCKEGRTWNKFVLTNGFVFRANKLCIPASSVHMLLLQEA 1228

Query: 3586 HGGGLMGHFGVAKTLAILQEHFYWPHMKRDVERICGRCVTCRQAKSRVPPHGLYTPLPIP 3765
            HGGGLMGHFGV K   IL +HF+WP  +RDVER   RC TC++AKSR+ PHGLY PLP+P
Sbjct: 1229 HGGGLMGHFGVKKMEDILADHFFWPKKRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVP 1288

Query: 3766 STPWIDISMDFMLGLPRSKRGRDSVFVVVDRFSKMAHFIPCHNMNDASHVADLLGR 3933
            S PW DISMDF+LGLPR+K+GRDS+FVVVDRFSKMAHFIPCH  +DA+HVADL  R
Sbjct: 1289 SVPWEDISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDATHVADLFFR 1344



 Score =  168 bits (426), Expect(3) = 0.0
 Identities = 85/160 (53%), Positives = 108/160 (67%), Gaps = 3/160 (1%)
 Frame = +2

Query: 4172 AYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSERVNLDGKKKAEFVKQIHEKARLNI 4351
            AYN + HS TK  PFEIVY   P  P+DL PLP SERVN D K +AE + ++HE  + NI
Sbjct: 1426 AYNRSQHSTTKKCPFEIVYGLLPRAPIDLLPLPTSERVNFDAKYRAELMLKLHETTKENI 1485

Query: 4352 E*RTEQYAKQANKGRHKIVFEAEDWVWLHMRKERFPAQRRSKLLPRGDGPFQVLEHINDN 4531
            E    +Y    +KG+  + FE  D VWLH+RK+RFP  R+SKLLPR DGPF+VL+ INDN
Sbjct: 1486 ERMNIKYKLAGSKGKKHVAFEPGDLVWLHLRKDRFPNLRKSKLLPRADGPFKVLQKINDN 1545

Query: 4532 AYKLDLPGEYNVSATFNVSDLSPFDVGDD---WRTNPFQE 4642
            AYKL+LP ++ VS TFN++DL P+   +D    RT   QE
Sbjct: 1546 AYKLELPADFGVSPTFNIADLKPYLGEEDELESRTTQMQE 1585



 Score =  151 bits (382), Expect(3) = 0.0
 Identities = 69/83 (83%), Positives = 75/83 (90%)
 Frame = +3

Query: 3921 FVREIVRLHGMPRTIVPDRDAKFLSYFWKTLWCKLGTKLLFSTTCHPQTDGQMEVVNRTL 4100
            F REIVRLHG+P TIV DRD KFLS+FW+TLW KLGTKLLFSTTCHPQTDGQ EVVNRTL
Sbjct: 1342 FFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRTL 1401

Query: 4101 STLLWAIIKKNIKTWEECLPHVE 4169
            ST+L A++KKNIK WEECLPHVE
Sbjct: 1402 STMLRAVLKKNIKMWEECLPHVE 1424



 Score =  197 bits (502), Expect(3) = e-103
 Identities = 105/253 (41%), Positives = 148/253 (58%), Gaps = 13/253 (5%)
 Frame = +2

Query: 1103 ATSHGNQGKSDSSTSRNHDIKCFKCQGRGHIASQCPNKRVMVLRXXXXXXXXXXXXXXFM 1282
            A +      S +S+ R  DI+C +C+G GH+   CP+ RVM++R                
Sbjct: 378  AATPSKSSSSVASSGRTRDIQCLRCKGYGHVRKDCPSTRVMIVRADGGYYFDSDLDEETY 437

Query: 1283 PPLEDAN---------DKEY----AAQGGDLLVARRALSVQAKEDGEVQLENIFHTRCHV 1423
              L   N         D+E+    AA+  + LV +R LS Q +   + QL  +F T+C +
Sbjct: 438  ALLATNNAGEGDAPHQDEEHIRAEAAEHYESLVVQRVLSAQMERAEQNQLHTLFQTKCVI 497

Query: 1424 QNKVCSVIIDGGSCTNVASTIMVEKLGLQTTKHPRPYKLQWLNDSGEVKVNKQVLVSFCI 1603
            + + C VIIDGGSC N+AS  MVEKL L T  HP+PY +QWLN SG+VKV + V V F I
Sbjct: 498  KERSCHVIIDGGSCNNLASAEMVEKLALSTQPHPQPYYIQWLNSSGKVKVTRLVRVHFAI 557

Query: 1604 GKYEDEVLCDVVPMQAGHLLLGRPWQFDRRVKHDGSTNKYSFVLNQRTITLVPLTPKQVH 1783
            G Y D + CDVVPMQA  +LLGRPWQFD+   H G +N+YSFV N + + L P++P+ + 
Sbjct: 558  GSYHDSINCDVVPMQACSMLLGRPWQFDKDSLHFGKSNQYSFVHNGKKLVLHPMSPEVIL 617

Query: 1784 EDQVILQKESEKK 1822
            +D+  L + S++K
Sbjct: 618  KDE--LARASKQK 628



 Score =  148 bits (373), Expect(3) = e-103
 Identities = 76/196 (38%), Positives = 117/196 (59%), Gaps = 2/196 (1%)
 Frame = +3

Query: 465  DNNLSSIKMKIPLFQGKNDPEAYLEWEKKVELVFDCHNYSENKKVKLAAIEFSDYAFVW* 644
            D++L  IK  IP F GK DP+AYL WE  +   F CH++ ENK+V+ A  EF+D+A +W 
Sbjct: 149  DDSLGKIKFTIPCFDGKYDPDAYLTWELAIVQKFACHDFPENKRVRAATSEFTDFASIWW 208

Query: 645  DQLVLNRRRNRERPIETWEEMKTVMRKRFVPSYYYRELYNKLQSLKQGNRSXXXXXXXXX 824
             + V   R N     +TW+ MK VMR RFVPSY+ R+L +KLQ L+QGN+S         
Sbjct: 209  SEFV---RSNPNNTPQTWDAMKRVMRARFVPSYHARDLLHKLQQLRQGNKSVEEYYQALQ 265

Query: 825  XXXIRANVEEDREATMSRFLVGLNREIANAVELQHYVELEDMVHMAIKIENQLKRRGSTC 1004
               +R  + E+ +A M+RF+ GLNREI + +  + Y  +  + H+A K E +++ R ++ 
Sbjct: 266  IGMLRCGLVENDDAGMARFMGGLNREIQDILAYKEYNSINRLFHLACKAEREVQGRRASF 325

Query: 1005 PSQNPS--TSAWKSNH 1046
             +   +   S+W S++
Sbjct: 326  RTNISAGCASSWTSSN 341



 Score = 82.0 bits (201), Expect(3) = e-103
 Identities = 48/108 (44%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
 Frame = +3

Query: 1884 SANERKTERKTN---FYAKASEIKRAMFSNQPMIVLLYKEAYFNANQLNASLPSSVVSLL 2054
            S    K E K     F A  S++            L+ KE  F       SL   V +LL
Sbjct: 654  SVQNNKNEIKLKGSCFIATKSDLDEVDTDTVFCYALVCKETLFPIEDTPISLRPPVTNLL 713

Query: 2055 QDFDDIFPKEIPNGLPPIRGIEHQIDFVLGATIPN*PA*RSNPE*TKE 2198
            Q++ DIFPKE+P GLPPIRGIEHQID + GA++PN    R+NPE TKE
Sbjct: 714  QEYADIFPKEVPPGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKE 761


>gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
          Length = 1619

 Score =  819 bits (2116), Expect(3) = 0.0
 Identities = 391/596 (65%), Positives = 477/596 (80%), Gaps = 1/596 (0%)
 Frame = +1

Query: 2149 PFQTDQLKGVTPSRQRKVIELMEKGYVRENMSPCAVLVILVPKKDRLWRMCVDCRAINNI 2328
            P++T+  +  T   QR+V EL++KGYVRE++SPC+V V+LVPKKD  WRMCVDCRAINNI
Sbjct: 647  PYRTNPEE--TKEIQRQVQELLDKGYVRESLSPCSVPVLLVPKKDGSWRMCVDCRAINNI 704

Query: 2329 MVKYRHPIPRLDDMLDELHGSCVFSKIDLKSEYHRIRMKEGDEWKTKFKTKYGLYE*LVM 2508
             ++YRHPIPRLDDMLDEL GS VFSKIDL S YH+IRMK GDEWKT FKTK+GLYE LVM
Sbjct: 705  TIRYRHPIPRLDDMLDELSGSLVFSKIDLCSGYHQIRMKLGDEWKTAFKTKFGLYEWLVM 764

Query: 2509 PFGLINATSTFMRLMNHVLRAFIENFVVIYFDDILIYSQNLDDHLMHLKLVLDVLRKEKL 2688
            PFGL NA STFMRLMN VLRAFI  FVV+YFDDILIYS++++DH  HL+ V D LR  +L
Sbjct: 765  PFGLTNAPSTFMRLMNEVLRAFIGRFVVVYFDDILIYSRSIEDHHGHLRAVFDALRDARL 824

Query: 2689 FANLKKCTFCTNKHVFLGFVTSTQGIQVDEEKIHAIQEWPSPTSVSNV*SFHGLASFYRR 2868
            F NL+KCTFCT++  FLG+V + QGI+VD+ K+ AI  WP PT+++ V SF GLA FYR 
Sbjct: 825  FGNLEKCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIHSWPVPTTITQVRSFLGLAGFYRL 884

Query: 2869 FVKDFNSIAAPITKVIKKNAGFKWGEEQEKAFQLIKQKLTHAPLHALPNFAKAFEIDCDA 3048
            FVKDF++IAAP+ ++ K+N  F W   Q  AF  +K KLTHAPL  LP+F K FE++CDA
Sbjct: 885  FVKDFSTIAAPLHELTKRNVTFTWAAAQRNAFDTLKDKLTHAPLLQLPDFNKTFELECDA 944

Query: 3049 LGLGIGVVLIQEGRPLAYFSEKLSGAALNYPTYDKEMYALVRSLETWQYYLWPKEFVIHI 3228
             G+G+G VL+QEG+P+AYFSEKLSG +LNY TYDK+++ALVR+LETWQ+YLWPKEFVIH 
Sbjct: 945  SGIGLGGVLLQEGKPVAYFSEKLSGPSLNYSTYDKQLFALVRTLETWQHYLWPKEFVIHS 1004

Query: 3229 DHESLKHLRGQHKLNKGRARWVEFFETFPYVIQYKQGKENIVADALSRRYILISTLDAKI 3408
            DHESLKH+R Q KLN+  A+WVEF E+FPYVI++K+GKEN++ DALSRRY ++S LD KI
Sbjct: 1005 DHESLKHIRSQAKLNRRHAKWVEFIESFPYVIKHKKGKENVIVDALSRRYAMLSQLDFKI 1064

Query: 3409 LGFEHIKELYPLDHDFNEEYESCEE-TTNGKYFRHEGFLFRENKLCIPNCSVRDLLVRES 3585
             G E IKE Y  D DF +   +C+E  T  K+    GF+FR NKLCIP  SV  LL++E+
Sbjct: 1065 FGLETIKEQYAHDDDFKDVLLNCKEGRTWNKFVLTNGFVFRANKLCIPASSVHMLLLQEA 1124

Query: 3586 HGGGLMGHFGVAKTLAILQEHFYWPHMKRDVERICGRCVTCRQAKSRVPPHGLYTPLPIP 3765
            HGGGLMGHFGV KT  IL +H +WP M+RDVER   RC TC++AKSR+ PHGLY PLP+P
Sbjct: 1125 HGGGLMGHFGVKKTEDILADHLFWPKMRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVP 1184

Query: 3766 STPWIDISMDFMLGLPRSKRGRDSVFVVVDRFSKMAHFIPCHNMNDASHVADLLGR 3933
            S PW DISMDF+LGLPR+K+GRDS+FVVVDRFSKMAHFIPCH  +DA+HVADL  R
Sbjct: 1185 SVPWEDISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDATHVADLFFR 1240



 Score =  167 bits (423), Expect(3) = 0.0
 Identities = 90/189 (47%), Positives = 116/189 (61%), Gaps = 15/189 (7%)
 Frame = +2

Query: 4172 AYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSERVNLDGKKKAEFVKQIHEKARLNI 4351
            AYN + HS TK  PFEIVY   P  P+DL PLP  ERVN D K +AE + ++HE  + NI
Sbjct: 1322 AYNRSQHSTTKKCPFEIVYGLLPRAPIDLLPLPTLERVNFDAKYRAELMLKLHETTKENI 1381

Query: 4352 E*RTEQYAKQANKGRHKIVFEAEDWVWLHMRKERFPAQRRSKLLPRGDGPFQVLEHINDN 4531
            E    +Y    +KG+  + FE  D VWLH+RK+RFP  R+SKL PR DGPFQVL+ INDN
Sbjct: 1382 ERMNIKYKLAGSKGKKHVAFEPGDLVWLHLRKDRFPNLRKSKLPPRADGPFQVLQKINDN 1441

Query: 4532 AYKLDLPGEYNVSATFNVSDLSPFDVGDD---WRTNPFQEEGND------------ANHG 4666
            AYKL+LP ++ VS TFN++DL P+   +D    RT   QE  +D            A  G
Sbjct: 1442 AYKLELPADFGVSPTFNIADLKPYLGEEDELESRTTQMQEGEDDEDIPSNDTTTPIAQQG 1501

Query: 4667 TVTRTQANK 4693
             +TR +A +
Sbjct: 1502 PMTRARARE 1510



 Score =  150 bits (379), Expect(3) = 0.0
 Identities = 68/83 (81%), Positives = 75/83 (90%)
 Frame = +3

Query: 3921 FVREIVRLHGMPRTIVPDRDAKFLSYFWKTLWCKLGTKLLFSTTCHPQTDGQMEVVNRTL 4100
            F REIVRLHG+P TIV DRD KFLS+FW+TLW KLGTKLLFSTTCHPQTDGQ EVVNRT+
Sbjct: 1238 FFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRTV 1297

Query: 4101 STLLWAIIKKNIKTWEECLPHVE 4169
            ST+L A++KKNIK WEECLPHVE
Sbjct: 1298 STMLRAVLKKNIKMWEECLPHVE 1320



 Score =  145 bits (367), Expect(2) = 1e-59
 Identities = 72/176 (40%), Positives = 107/176 (60%)
 Frame = +3

Query: 465 DNNLSSIKMKIPLFQGKNDPEAYLEWEKKVELVFDCHNYSENKKVKLAAIEFSDYAFVW* 644
           D++L  IK  IP F GK DP+AYL WE  ++  F CH++ ENK+V+ A  EF+D+A +W 
Sbjct: 149 DDSLGKIKFTIPCFDGKYDPDAYLTWELAIDQKFACHDFPENKRVRAATSEFTDFASIWW 208

Query: 645 DQLVLNRRRNRERPIETWEEMKTVMRKRFVPSYYYRELYNKLQSLKQGNRSXXXXXXXXX 824
            + V   R N     +TW+ MK VMR RFVPSY+ R+L +KLQ L+QGN+S         
Sbjct: 209 SEFV---RSNPNNTPQTWDAMKRVMRARFVPSYHARDLLHKLQQLRQGNKSVEEYYQALQ 265

Query: 825 XXXIRANVEEDREATMSRFLVGLNREIANAVELQHYVELEDMVHMAIKIENQLKRR 992
              +R  + E+ +A M+RF+  LNREI + +  + Y  +  + H+A K E +++ R
Sbjct: 266 IGMLRCGLVENDDAGMARFMGELNREIQDILAYKEYNSINRLFHLACKAEREVQGR 321



 Score =  115 bits (288), Expect(2) = 1e-59
 Identities = 61/177 (34%), Positives = 90/177 (50%), Gaps = 13/177 (7%)
 Frame = +2

Query: 1103 ATSHGNQGKSDSSTSRNHDIKCFKCQGRGHIASQCPNKRVMVLRXXXXXXXXXXXXXXF- 1279
            A +      S +S  R  DI+C +C+G GH+   CP+ RVM++R                
Sbjct: 360  AATPSKSSSSVASLGRTRDIQCLRCKGYGHVRKDCPSTRVMIVRADGGYSSASDLDEETY 419

Query: 1280 ------------MPPLEDANDKEYAAQGGDLLVARRALSVQAKEDGEVQLENIFHTRCHV 1423
                         P  ++ + K  AA+  + LV +R LS Q +   + Q   +F T+C +
Sbjct: 420  ALLATNNAGEGDAPHQDEEHIKAEAAEHYESLVVQRVLSAQMERAEQNQRHTLFQTKCVI 479

Query: 1424 QNKVCSVIIDGGSCTNVASTIMVEKLGLQTTKHPRPYKLQWLNDSGEVKVNKQVLVS 1594
            + + C VIIDGGSC N+AS  MVEKL L T  HP+PY +QWLN SG+     + L++
Sbjct: 480  KERSCRVIIDGGSCNNLASAEMVEKLALSTQPHPQPYYIQWLNSSGKEHTRSEHLIA 536



 Score = 86.3 bits (212), Expect = 1e-13
 Identities = 49/108 (45%), Positives = 60/108 (55%), Gaps = 3/108 (2%)
 Frame = +3

Query: 1884 SANERKTERKTN---FYAKASEIKRAMFSNQPMIVLLYKEAYFNANQLNASLPSSVVSLL 2054
            S    K E K     F A  S++            L+ KE  F       SLP  V +LL
Sbjct: 550  SVQNNKNEIKLKGSCFIATKSDLDEVDTDTVVCYALVCKETLFPIEDTPISLPPPVTNLL 609

Query: 2055 QDFDDIFPKEIPNGLPPIRGIEHQIDFVLGATIPN*PA*RSNPE*TKE 2198
            Q++ DIFPKE+P GLPPIRGIEHQID + GA++PN    R+NPE TKE
Sbjct: 610  QEYADIFPKEVPPGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKE 657


>gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum subsp.
            aegilopoides]
          Length = 1704

 Score =  818 bits (2113), Expect(3) = 0.0
 Identities = 390/596 (65%), Positives = 482/596 (80%), Gaps = 1/596 (0%)
 Frame = +1

Query: 2149 PFQTDQLKGVTPSRQRKVIELMEKGYVRENMSPCAVLVILVPKKDRLWRMCVDCRAINNI 2328
            P++T+  +  T    R+V EL++KGY+RE++SPCAV +ILVPKKD   RMCVDCR INNI
Sbjct: 767  PYRTNPEE--TKEIMRQVQELLDKGYIRESLSPCAVPIILVPKKDGTSRMCVDCRGINNI 824

Query: 2329 MVKYRHPIPRLDDMLDELHGSCVFSKIDLKSEYHRIRMKEGDEWKTKFKTKYGLYE*LVM 2508
             ++YRHPIPRLDDMLDEL GS +FSK+DL+S YH+IRMK GDEWKT FKTK+GLYE LVM
Sbjct: 825  TIRYRHPIPRLDDMLDELSGSTIFSKVDLRSGYHQIRMKLGDEWKTTFKTKFGLYEWLVM 884

Query: 2509 PFGLINATSTFMRLMNHVLRAFIENFVVIYFDDILIYSQNLDDHLMHLKLVLDVLRKEKL 2688
            PFGL NA STFMRLMN VLRAFI  FVV+YFDDILIYS++L++HL HL+ V   LR  +L
Sbjct: 885  PFGLTNAPSTFMRLMNEVLRAFIGRFVVVYFDDILIYSKSLEEHLEHLRAVFIALRDARL 944

Query: 2689 FANLKKCTFCTNKHVFLGFVTSTQGIQVDEEKIHAIQEWPSPTSVSNV*SFHGLASFYRR 2868
            F NL KCTFCT++  FLG+V + QGI+VD+ KI AI+ WP P +V+ V SF GLA FYRR
Sbjct: 945  FGNLGKCTFCTDRVSFLGYVVTPQGIEVDKAKIEAIESWPHPKTVTQVRSFLGLAGFYRR 1004

Query: 2869 FVKDFNSIAAPITKVIKKNAGFKWGEEQEKAFQLIKQKLTHAPLHALPNFAKAFEIDCDA 3048
            FV+DF++IAAP+ +V KK+  F WG  QE+AF ++K KLT+APL  LPNF K FE++CDA
Sbjct: 1005 FVRDFSTIAAPLNEVTKKDVPFVWGTAQEEAFTVLKDKLTYAPLLQLPNFNKTFELECDA 1064

Query: 3049 LGLGIGVVLIQEGRPLAYFSEKLSGAALNYPTYDKEMYALVRSLETWQYYLWPKEFVIHI 3228
             G+G+G VL+Q+G+P+AYFSEK SG +LNY TYDKE+YALVR+LETWQ+YLWPKEFVIH 
Sbjct: 1065 SGIGLGGVLLQDGKPVAYFSEKFSGPSLNYSTYDKELYALVRTLETWQHYLWPKEFVIHS 1124

Query: 3229 DHESLKHLRGQHKLNKGRARWVEFFETFPYVIQYKQGKENIVADALSRRYILISTLDAKI 3408
            DHESLKH++ Q KLN+  A+WVEF ETFPYVI++K+GKEN++ADALSRRY ++S LD KI
Sbjct: 1125 DHESLKHIKSQAKLNRRHAKWVEFIETFPYVIKHKKGKENVIADALSRRYTMLSQLDFKI 1184

Query: 3409 LGFEHIKELYPLDHDFNEEYESCEE-TTNGKYFRHEGFLFRENKLCIPNCSVRDLLVRES 3585
             G E IK+ Y  D +F +  ++C+E  T  K+  ++GF+FR NKLCIP  SVR LL++E+
Sbjct: 1185 FGLETIKDQYVHDAEFKDVLQNCKEGRTWNKFVLNDGFVFRANKLCIPASSVRLLLLQEA 1244

Query: 3586 HGGGLMGHFGVAKTLAILQEHFYWPHMKRDVERICGRCVTCRQAKSRVPPHGLYTPLPIP 3765
            HGGGLMGHFGV KT  IL  HF+WP M+RDVER   RC TC++AKSR+ PHGLY PLP+P
Sbjct: 1245 HGGGLMGHFGVKKTEDILATHFFWPKMRRDVERFVARCTTCQRAKSRLNPHGLYMPLPVP 1304

Query: 3766 STPWIDISMDFMLGLPRSKRGRDSVFVVVDRFSKMAHFIPCHNMNDASHVADLLGR 3933
            S PW DISMDF+LGLPR+K+GRDS+FVVVDRFSKMAHFIPCH  +DA +VADL  R
Sbjct: 1305 SVPWEDISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDAVNVADLFFR 1360



 Score =  181 bits (458), Expect(3) = 0.0
 Identities = 90/175 (51%), Positives = 118/175 (67%), Gaps = 3/175 (1%)
 Frame = +2

Query: 4172 AYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSERVNLDGKKKAEFVKQIHEKARLNI 4351
            AYN ++HS TK  PFEIVY F P  P+DL PLP SE+VN D K+++E + +IHE  + NI
Sbjct: 1442 AYNRSLHSTTKMCPFEIVYGFLPRAPIDLLPLPSSEKVNFDAKERSELILKIHELTKENI 1501

Query: 4352 E*RTEQYAKQANKGRHKIVFEAEDWVWLHMRKERFPAQRRSKLLPRGDGPFQVLEHINDN 4531
            E    +Y    +KGR  +VF   D VWLH+RK+RFP  R+SKL+PR DGPF+VLE INDN
Sbjct: 1502 ERMNAKYKLARDKGRKHVVFAPGDLVWLHLRKDRFPNLRKSKLMPRADGPFKVLEKINDN 1561

Query: 4532 AYKLDLPGEYNVSATFNVSDLSPFDVGDD---WRTNPFQEEGNDANHGTVTRTQA 4687
            AYKL+LP ++ VS TFN++DL P+   +D    RT  FQE  +D +  T+    A
Sbjct: 1562 AYKLELPADFGVSPTFNIADLKPYLGEEDELPSRTTSFQEGEDDEDINTIVTPTA 1616



 Score =  142 bits (357), Expect(3) = 0.0
 Identities = 63/83 (75%), Positives = 71/83 (85%)
 Frame = +3

Query: 3921 FVREIVRLHGMPRTIVPDRDAKFLSYFWKTLWCKLGTKLLFSTTCHPQTDGQMEVVNRTL 4100
            F REI+RLHG+P TIV DRD KFLS+FW+ LW KLG KLLFSTTCHPQTDGQ EVVNRTL
Sbjct: 1358 FFREIIRLHGVPNTIVSDRDTKFLSHFWRCLWAKLGNKLLFSTTCHPQTDGQTEVVNRTL 1417

Query: 4101 STLLWAIIKKNIKTWEECLPHVE 4169
            ST+L A++K N K WEECLPH+E
Sbjct: 1418 STMLRAVLKNNKKMWEECLPHIE 1440



 Score =  189 bits (480), Expect(2) = 5e-65
 Identities = 108/268 (40%), Positives = 151/268 (56%), Gaps = 15/268 (5%)
 Frame = +2

Query: 1067 TYDEAKNRVKKEATSHGNQGKSDSS---TSRNHDIKCFKCQGRGHIASQCPNKRVMVLRX 1237
            T  +A++ +  ++T  G    S SS   T + HDI C +C+G GH A +CP+KRVM++  
Sbjct: 381  TIKQAQSPLSAKSTPSGPAKSSSSSMASTGQTHDIICRRCKGGGHYARECPSKRVMIVSE 440

Query: 1238 XXXXXXXXXXXXXFMPPLE------DANDKEYA------AQGGDLLVARRALSVQAKEDG 1381
                          +  +       D +D E        A   + LVA+R LSVQ  +  
Sbjct: 441  DGGYESASDYDEETLALITRDKHGGDDSDHETQYMAPEDADRYECLVAQRVLSVQVTQAE 500

Query: 1382 EVQLENIFHTRCHVQNKVCSVIIDGGSCTNVASTIMVEKLGLQTTKHPRPYKLQWLNDSG 1561
            + Q  N+FHT+  V+ +   VIIDGGSC N+AS  MVEKL L T  HP PY +QW N+SG
Sbjct: 501  QNQRHNLFHTKGVVKERSVRVIIDGGSCNNLASMEMVEKLSLITRPHPHPYYIQWFNNSG 560

Query: 1562 EVKVNKQVLVSFCIGKYEDEVLCDVVPMQAGHLLLGRPWQFDRRVKHDGSTNKYSFVLNQ 1741
            +VKV + V V F I  Y D V CDVVPMQA  LLLGRPWQFD+   H    N Y+ V   
Sbjct: 561  KVKVTRTVRVHFSISTYADYVDCDVVPMQACSLLLGRPWQFDKNSVHHDRKNLYTLVHKD 620

Query: 1742 RTITLVPLTPKQVHEDQVILQKESEKKK 1825
            + ITL+P+TP+ + +D +    +++++K
Sbjct: 621  KNITLLPMTPESILKDDINRANKAKQEK 648



 Score = 89.7 bits (221), Expect(2) = 5e-65
 Identities = 44/91 (48%), Positives = 61/91 (67%)
 Frame = +3

Query: 1926 AKASEIKRAMFSNQPMIVLLYKEAYFNANQLNASLPSSVVSLLQDFDDIFPKEIPNGLPP 2105
            A  S+I    FS       + KEA F+   + +SLP +V ++LQ+F D+FP+++P GLPP
Sbjct: 687  ATKSDIDDLDFSKSVCYAFVCKEALFSFEDVPSSLPPAVTNILQEFTDVFPQDVPPGLPP 746

Query: 2106 IRGIEHQIDFVLGATIPN*PA*RSNPE*TKE 2198
            IRGIEHQID + GA++PN    R+NPE TKE
Sbjct: 747  IRGIEHQIDLIPGASLPNRAPYRTNPEETKE 777



 Score =  122 bits (307), Expect = 1e-24
 Identities = 66/179 (36%), Positives = 96/179 (53%), Gaps = 1/179 (0%)
 Frame = +3

Query: 459 REDNNLSSIKMKIPLFQGKNDPEAYLEWEKKVELVFDCHNYSENKKVKLAAIEFSDYAFV 638
           R+ ++L  +K+ IP F+G+  P+ YL WE + E  F C  Y E ++V  A   F+ +A V
Sbjct: 167 RDHDHLPKLKLNIPPFEGRYVPDIYLTWELETEQQFTCLQYPEERRVPAAVCAFTSFACV 226

Query: 639 W*DQLVLNRRRNRERPIE-TWEEMKTVMRKRFVPSYYYRELYNKLQSLKQGNRSXXXXXX 815
           W  +        R  PI  TW  +KT MR R+VP YY  EL  KLQ L+QG  S      
Sbjct: 227 WWSE------HCRLYPIPATWAALKTAMRTRWVPPYYQHELLQKLQRLRQGKNSVEEYYQ 280

Query: 816 XXXXXXIRANVEEDREATMSRFLVGLNREIANAVELQHYVELEDMVHMAIKIENQLKRR 992
                 IR  + E+ EA ++RF+ GLNREI   +E + Y  +  + H+A K E +++ R
Sbjct: 281 ELQTGMIRCGIVEENEAMLARFMGGLNREIQTILEYKDYTNITRLFHLACKAEREVQDR 339


>gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]
          Length = 1717

 Score =  818 bits (2112), Expect(3) = 0.0
 Identities = 388/596 (65%), Positives = 480/596 (80%), Gaps = 1/596 (0%)
 Frame = +1

Query: 2149 PFQTDQLKGVTPSRQRKVIELMEKGYVRENMSPCAVLVILVPKKDRLWRMCVDCRAINNI 2328
            P++T+  +  T    R+V EL++KGY+RE++SPCAV +ILVPKKD   RMCVDCR INNI
Sbjct: 779  PYRTNPEE--TKEIMRQVQELLDKGYIRESLSPCAVPIILVPKKDGTSRMCVDCRGINNI 836

Query: 2329 MVKYRHPIPRLDDMLDELHGSCVFSKIDLKSEYHRIRMKEGDEWKTKFKTKYGLYE*LVM 2508
             ++YRHPIPRLDDMLDEL GS +FSK+DL+S YH+IRMK GDEWKT FKTK+GLYE LVM
Sbjct: 837  TIRYRHPIPRLDDMLDELSGSIIFSKVDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVM 896

Query: 2509 PFGLINATSTFMRLMNHVLRAFIENFVVIYFDDILIYSQNLDDHLMHLKLVLDVLRKEKL 2688
            PFGL NA STFMRLMN VLRAFI  FVV+YFDDILIYS++L+DHL HL+ V   LR  +L
Sbjct: 897  PFGLTNAPSTFMRLMNEVLRAFIGRFVVVYFDDILIYSRSLEDHLDHLRAVFTALRDARL 956

Query: 2689 FANLKKCTFCTNKHVFLGFVTSTQGIQVDEEKIHAIQEWPSPTSVSNV*SFHGLASFYRR 2868
            F NL KCTFCT++  FLG+V + QGI+VD+ KI AI+ WP P +V+ V SF GLA FYRR
Sbjct: 957  FGNLGKCTFCTDRVSFLGYVVTPQGIEVDKAKIEAIESWPQPKTVTQVRSFLGLAGFYRR 1016

Query: 2869 FVKDFNSIAAPITKVIKKNAGFKWGEEQEKAFQLIKQKLTHAPLHALPNFAKAFEIDCDA 3048
            FV+DF++IAAP+ ++ KK+  + WG  QE+AF ++K KLTHAPL  LP+F K FE++CDA
Sbjct: 1017 FVRDFSTIAAPLNELTKKDVPYSWGTAQEEAFTVLKDKLTHAPLLQLPDFNKTFELECDA 1076

Query: 3049 LGLGIGVVLIQEGRPLAYFSEKLSGAALNYPTYDKEMYALVRSLETWQYYLWPKEFVIHI 3228
             G+G+G VL+Q+G+P+AYFSEKLSG +LNY TYDKE+YALVR+LETWQ+YLWPKEFVIH 
Sbjct: 1077 SGIGLGGVLLQDGKPVAYFSEKLSGPSLNYSTYDKELYALVRTLETWQHYLWPKEFVIHS 1136

Query: 3229 DHESLKHLRGQHKLNKGRARWVEFFETFPYVIQYKQGKENIVADALSRRYILISTLDAKI 3408
            DHESLKH++ Q KLN+  A+WVEF ETFPYVI+ K+GK+N++ADALSRRY ++S LD KI
Sbjct: 1137 DHESLKHIKSQAKLNRRHAKWVEFIETFPYVIKDKKGKDNVIADALSRRYTMLSQLDFKI 1196

Query: 3409 LGFEHIKELYPLDHDFNEEYESCEE-TTNGKYFRHEGFLFRENKLCIPNCSVRDLLVRES 3585
             G E IK+ Y  D DF +  E+C E  T  K+  + GF+FR NKLCIP  S+R LL++E+
Sbjct: 1197 FGLETIKDQYVHDADFKDVLENCREGRTWNKFIINNGFVFRANKLCIPASSIRLLLLQEA 1256

Query: 3586 HGGGLMGHFGVAKTLAILQEHFYWPHMKRDVERICGRCVTCRQAKSRVPPHGLYTPLPIP 3765
            HGGGLMGHFGV K   +L  HF+WP M+RDVER   RC TC++AKSR+ PHGLY PLP+P
Sbjct: 1257 HGGGLMGHFGVKKMEDVLATHFFWPRMRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVP 1316

Query: 3766 STPWIDISMDFMLGLPRSKRGRDSVFVVVDRFSKMAHFIPCHNMNDASHVADLLGR 3933
            S PW DISMDF+LGLPR+K+GRDS+FVVVDRFSKMAHFIPCH  +DA++VADL  R
Sbjct: 1317 SVPWEDISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDAANVADLFFR 1372



 Score =  173 bits (439), Expect(3) = 0.0
 Identities = 86/175 (49%), Positives = 116/175 (66%), Gaps = 3/175 (1%)
 Frame = +2

Query: 4172 AYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSERVNLDGKKKAEFVKQIHEKARLNI 4351
            AYN ++HS TK  PFEIVY F P  P+DL P+P SE+VN D K++AE + ++HE  + NI
Sbjct: 1454 AYNRSLHSTTKMCPFEIVYGFLPRAPIDLLPIPSSEKVNFDAKERAELILKMHELTKENI 1513

Query: 4352 E*RTEQYAKQANKGRHKIVFEAEDWVWLHMRKERFPAQRRSKLLPRGDGPFQVLEHINDN 4531
            E    +Y    +KGR  +VF   D VWLH+RK+RFP  R+SKL+PR  GPF+VLE INDN
Sbjct: 1514 ERMNARYKLAGDKGRKHVVFAPGDLVWLHLRKDRFPDLRKSKLMPRAGGPFKVLEKINDN 1573

Query: 4532 AYKLDLPGEYNVSATFNVSDLSPFDVGDD---WRTNPFQEEGNDANHGTVTRTQA 4687
            AY+L+LP ++ VS TFN++DL P+   +D    RT   QE  +D +  T+    A
Sbjct: 1574 AYRLELPXDFGVSPTFNIADLKPYLGEEDELPSRTTSVQEGEDDEDINTIATPTA 1628



 Score =  145 bits (366), Expect(3) = 0.0
 Identities = 64/83 (77%), Positives = 74/83 (89%)
 Frame = +3

Query: 3921 FVREIVRLHGMPRTIVPDRDAKFLSYFWKTLWCKLGTKLLFSTTCHPQTDGQMEVVNRTL 4100
            F REI+RLHG+P TIV DRDAKFLS+FW+ LW KLGTKLLFSTTCHPQTDGQ EVVNR+L
Sbjct: 1370 FFREIIRLHGVPNTIVSDRDAKFLSHFWRCLWAKLGTKLLFSTTCHPQTDGQTEVVNRSL 1429

Query: 4101 STLLWAIIKKNIKTWEECLPHVE 4169
            ST+L A++K N+K WEECLPH+E
Sbjct: 1430 STMLRAVLKTNLKLWEECLPHIE 1452



 Score =  189 bits (480), Expect = 1e-44
 Identities = 99/238 (41%), Positives = 140/238 (58%), Gaps = 12/238 (5%)
 Frame = +2

Query: 1118 NQGKSDSSTSRNHDIKCFKCQGRGHIASQCPNKRVMVLRXXXXXXXXXXXXXXFMPPL-- 1291
            +   S +ST + H++ C +C+G GH A +CP+KRVM++                +  +  
Sbjct: 414  SSSSSTASTGQTHEVICRRCKGGGHYARECPSKRVMIITEDGGYDSASDYDEETLALIAS 473

Query: 1292 ------EDANDKEYAAQGG----DLLVARRALSVQAKEDGEVQLENIFHTRCHVQNKVCS 1441
                  + A + +Y A       + LVA+R LSVQ  +  + Q  N+FHT+  V+ +   
Sbjct: 474  EERGVXDTAQETQYMAADYADRYESLVAQRVLSVQVTQVEQNQRHNLFHTKGVVKERSVR 533

Query: 1442 VIIDGGSCTNVASTIMVEKLGLQTTKHPRPYKLQWLNDSGEVKVNKQVLVSFCIGKYEDE 1621
            VIIDGGSC N+AS  MVEKL L T  HP PY +QW N+SG+VKV + V V F I  Y D 
Sbjct: 534  VIIDGGSCNNLASMEMVEKLSLTTRPHPHPYYIQWFNNSGKVKVTRTVRVHFSIATYSDF 593

Query: 1622 VLCDVVPMQAGHLLLGRPWQFDRRVKHDGSTNKYSFVLNQRTITLVPLTPKQVHEDQV 1795
            V CDVVPMQA  +LLGRPWQFD+   H G TN+Y+ V   + ITL+P++P+ + +D +
Sbjct: 594  VDCDVVPMQACSVLLGRPWQFDKNSVHHGRTNQYTLVHKDQNITLLPMSPEHIMKDDI 651



 Score =  120 bits (302), Expect = 5e-24
 Identities = 64/194 (32%), Positives = 102/194 (52%), Gaps = 2/194 (1%)
 Frame = +3

Query: 459  REDNNLSSIKMKIPLFQGKNDPEAYLEWEKKVELVFDCHNYSENKKVKLAAIEFSDYAFV 638
            R+ ++L  +K+ IP F G+  P+ YL WE + E  F C  + E+++V  A   F+ +A +
Sbjct: 177  RDHDHLPKVKLNIPSFDGRYVPDLYLTWELETEQRFTCLQFPEDRRVAAAVCSFTSFACI 236

Query: 639  W*DQLVLNRRRNRERPIETWEEMKTVMRKRFVPSYYYRELYNKLQSLKQGNRSXXXXXXX 818
            W  +       N      TW  +KT MR R+VP YY R+L   LQ L+QG +S       
Sbjct: 237  WWSEYCRIHHANIPA---TWAALKTAMRTRWVPPYYQRDLLQNLQRLRQGKKSVEEYYQE 293

Query: 819  XXXXXIRANVEEDREATMSRFLVGLNREIANAVELQHYVELEDMVHMAIKIENQLKRRGS 998
                 IR  + ED EA ++RF+ GLNR+I   +E + Y  +  + H+A K E +++ R +
Sbjct: 294  LQTGMIRCGIVEDNEAMLARFMGGLNRDIQTILEYKDYNTITRLFHLACKAEREVQDRQA 353

Query: 999  TCPSQNPS--TSAW 1034
               +   +  TS+W
Sbjct: 354  LARTNFSAGRTSSW 367



 Score = 85.9 bits (211), Expect = 2e-13
 Identities = 41/91 (45%), Positives = 60/91 (65%)
 Frame = +3

Query: 1926 AKASEIKRAMFSNQPMIVLLYKEAYFNANQLNASLPSSVVSLLQDFDDIFPKEIPNGLPP 2105
            A  S+I     +       + KE  F+   + +SLP +V+++LQ+F D+FP+++P GLPP
Sbjct: 699  ATKSDITDLDITTSVCYAFVCKEVLFSFEDMPSSLPPAVINILQEFADVFPQDVPPGLPP 758

Query: 2106 IRGIEHQIDFVLGATIPN*PA*RSNPE*TKE 2198
            IRGIEHQID + GA++PN    R+NPE TKE
Sbjct: 759  IRGIEHQIDLIPGASLPNRAPYRTNPEETKE 789


>gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
          Length = 1619

 Score =  816 bits (2108), Expect(3) = 0.0
 Identities = 390/596 (65%), Positives = 476/596 (79%), Gaps = 1/596 (0%)
 Frame = +1

Query: 2149 PFQTDQLKGVTPSRQRKVIELMEKGYVRENMSPCAVLVILVPKKDRLWRMCVDCRAINNI 2328
            P++T+  +  T   QR+V EL++KGYVRE++SPCAV VILVPKKD  WRMCVDCRAINNI
Sbjct: 702  PYRTNPEE--TKEIQRQVHELLDKGYVRESLSPCAVPVILVPKKDGSWRMCVDCRAINNI 759

Query: 2329 MVKYRHPIPRLDDMLDELHGSCVFSKIDLKSEYHRIRMKEGDEWKTKFKTKYGLYE*LVM 2508
             ++YRHPIPRLDDMLDEL GS VFSK++L+S YH+I MK GDEWKT FKTK+GLYE LVM
Sbjct: 760  TIRYRHPIPRLDDMLDELSGSIVFSKVELRSGYHQIHMKLGDEWKTAFKTKFGLYEWLVM 819

Query: 2509 PFGLINATSTFMRLMNHVLRAFIENFVVIYFDDILIYSQNLDDHLMHLKLVLDVLRKEKL 2688
            PFGL NA STFMRLMN VLR FI  FVV+YFDDILIYS+++ +H  HL+ V + LR  +L
Sbjct: 820  PFGLTNAPSTFMRLMNEVLRPFIGKFVVVYFDDILIYSKSMGEHFNHLRAVFNALRDARL 879

Query: 2689 FANLKKCTFCTNKHVFLGFVTSTQGIQVDEEKIHAIQEWPSPTSVSNV*SFHGLASFYRR 2868
            F NL+KCTFCT++  FLG+V + QGI+VD+ K+ AIQ WP+P +VS V SF GLA FY R
Sbjct: 880  FGNLEKCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIQSWPTPKTVSQVRSFLGLAGFYCR 939

Query: 2869 FVKDFNSIAAPITKVIKKNAGFKWGEEQEKAFQLIKQKLTHAPLHALPNFAKAFEIDCDA 3048
            FV+DF++IAAP+  + KK   F WG  QE AF ++K KLTHAPL  LP+F K FE++CDA
Sbjct: 940  FVQDFSTIAAPLNALTKKGVPFTWGTSQENAFHMLKHKLTHAPLLQLPDFNKTFELECDA 999

Query: 3049 LGLGIGVVLIQEGRPLAYFSEKLSGAALNYPTYDKEMYALVRSLETWQYYLWPKEFVIHI 3228
             G+G+G VL+QEG+ +AYFSEKLSG  LNY TYDKE+YALVR+LETWQ+YLWPKEFVIH 
Sbjct: 1000 SGIGLGGVLLQEGKLVAYFSEKLSGPVLNYSTYDKELYALVRTLETWQHYLWPKEFVIHS 1059

Query: 3229 DHESLKHLRGQHKLNKGRARWVEFFETFPYVIQYKQGKENIVADALSRRYILISTLDAKI 3408
            DHESLKH+R Q KLN+  A+WVEF E+FPYVI++K+GKENI+A+ALSRRY L++ LD KI
Sbjct: 1060 DHESLKHIRSQGKLNRRHAKWVEFIESFPYVIKHKKGKENIIANALSRRYTLLTQLDYKI 1119

Query: 3409 LGFEHIKELYPLDHDFNEEYESCEE-TTNGKYFRHEGFLFRENKLCIPNCSVRDLLVRES 3585
             G E IK+ Y  D DFN+    C++  T  K+  ++GF+FR NKLCIP  SVR LL++E+
Sbjct: 1120 FGLETIKDQYAHDADFNDVLLHCKDGRTWNKFVINDGFVFRANKLCIPASSVRLLLLQEA 1179

Query: 3586 HGGGLMGHFGVAKTLAILQEHFYWPHMKRDVERICGRCVTCRQAKSRVPPHGLYTPLPIP 3765
            HGGGLMGHFG  KT  IL  HF+WP M+RDV R   RC TC++AKSR+ PHGLY PLP+P
Sbjct: 1180 HGGGLMGHFGAKKTHDILASHFFWPQMRRDVGRFVARCATCQKAKSRLHPHGLYMPLPVP 1239

Query: 3766 STPWIDISMDFMLGLPRSKRGRDSVFVVVDRFSKMAHFIPCHNMNDASHVADLLGR 3933
            + PW DISMDF+LGLPR+KRGRDS+FVVVDRFSKM HFIPCH  +DASH+ADL  R
Sbjct: 1240 TVPWEDISMDFVLGLPRTKRGRDSIFVVVDRFSKMVHFIPCHKTDDASHIADLFFR 1295



 Score =  172 bits (435), Expect(3) = 0.0
 Identities = 85/170 (50%), Positives = 114/170 (67%), Gaps = 3/170 (1%)
 Frame = +2

Query: 4172 AYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSERVNLDGKKKAEFVKQIHEKARLNI 4351
            A N ++HS TK  PF+IVY   P  P+DL PLP SE++N D K++AE + ++HE  + NI
Sbjct: 1377 ACNRSLHSTTKMCPFQIVYSLLPRAPIDLMPLPSSEKLNFDAKQRAELMLKLHETTKENI 1436

Query: 4352 E*RTEQYAKQANKGRHKIVFEAEDWVWLHMRKERFPAQRRSKLLPRGDGPFQVLEHINDN 4531
            E    +Y    +KGR ++ FE  D VWLH+RKERFP  R+SKL+PR DGPF+VL  IN+N
Sbjct: 1437 ERMNAKYKFAGDKGRRELNFEPGDLVWLHLRKERFPDLRKSKLMPRADGPFKVLAKINEN 1496

Query: 4532 AYKLDLPGEYNVSATFNVSDLSPFDVGDD---WRTNPFQEEGNDANHGTV 4672
            AYK+DLP ++ VS TFNV+DL P+   +D    RT   QE  +D N  T+
Sbjct: 1497 AYKIDLPADFGVSPTFNVADLKPYLGEEDELESRTTQMQEGEDDENINTI 1546



 Score =  152 bits (383), Expect(3) = 0.0
 Identities = 68/83 (81%), Positives = 76/83 (91%)
 Frame = +3

Query: 3921 FVREIVRLHGMPRTIVPDRDAKFLSYFWKTLWCKLGTKLLFSTTCHPQTDGQMEVVNRTL 4100
            F REIVRLHG+P TIV DRD KFLS+FW+TLW KLGTKLLFSTTCHPQTDGQ+EVVNRTL
Sbjct: 1293 FFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQIEVVNRTL 1352

Query: 4101 STLLWAIIKKNIKTWEECLPHVE 4169
            ST+L A++KKNIK WEECLPH+E
Sbjct: 1353 STMLRAVLKKNIKMWEECLPHIE 1375



 Score =  190 bits (483), Expect(3) = e-100
 Identities = 100/248 (40%), Positives = 143/248 (57%), Gaps = 9/248 (3%)
 Frame = +2

Query: 1100 EATSHGNQGKSDSSTSRNHDIKCFKCQGRGHIASQCPNKRVMVLRXXXXXXXXXXXXXXF 1279
            +A        S +ST R  D++C +C+G GH+   CP+KRV+V++               
Sbjct: 349  KAAQPAPSASSMASTGRMRDVQCHRCKGFGHVQRDCPSKRVLVVKNDGEYSSASDFDDDT 408

Query: 1280 MPPLE-DANDKEYA--------AQGGDLLVARRALSVQAKEDGEVQLENIFHTRCHVQNK 1432
            +  L  D  D E          A   + L+ +R LS Q ++  + Q   +F T+C V+ +
Sbjct: 409  LALLAADHADNEPPEEHIGAAFADHYESLIVQRVLSAQMEKAEQNQRHTLFQTKCVVKER 468

Query: 1433 VCSVIIDGGSCTNVASTIMVEKLGLQTTKHPRPYKLQWLNDSGEVKVNKQVLVSFCIGKY 1612
             C +IIDGGSC N+AS+ MVEKL L T  HP  Y +QWLN+SG+ KV K V ++F IG Y
Sbjct: 469  CCRMIIDGGSCNNLASSEMVEKLALSTKPHPHSYYIQWLNNSGKAKVTKLVHINFAIGNY 528

Query: 1613 EDEVLCDVVPMQAGHLLLGRPWQFDRRVKHDGSTNKYSFVLNQRTITLVPLTPKQVHEDQ 1792
             D V CDVVPMQA ++LLGRPWQFDR   H G +N+YSF+ + + I L P++P+ +  D 
Sbjct: 529  HDVVECDVVPMQACNILLGRPWQFDRDSMHHGRSNQYSFLYHDKKIVLHPMSPEDILRDD 588

Query: 1793 VILQKESE 1816
            V    +S+
Sbjct: 589  VAKAAKSK 596



 Score =  139 bits (350), Expect(3) = e-100
 Identities = 80/206 (38%), Positives = 115/206 (55%), Gaps = 4/206 (1%)
 Frame = +3

Query: 447  GARNRE----DNNLSSIKMKIPLFQGKNDPEAYLEWEKKVELVFDCHNYSENKKVKLAAI 614
            G R RE    D+  S IK KIP F GK DP+AYL WE  V+  F CH + E+ +V+ A  
Sbjct: 137  GRRRREVCNNDDAFSKIKFKIPPFDGKYDPDAYLSWEIAVDQKFACHEFPESTRVRAATS 196

Query: 615  EFSDYAFVW*DQLVLNRRRNRERPIETWEEMKTVMRKRFVPSYYYRELYNKLQSLKQGNR 794
            EF+D+A VW    + + ++N     +TW+ +K VMR RFVPSYY R+L N+LQ L+Q   
Sbjct: 197  EFTDFASVW---WIEHGKKNPNNMPQTWDALKRVMRARFVPSYYARDLLNRLQQLRQ--- 250

Query: 795  SXXXXXXXXXXXXIRANVEEDREATMSRFLVGLNREIANAVELQHYVELEDMVHMAIKIE 974
                              EE  +A M+RFL GLNREI + V+ + Y  +  + H+A K E
Sbjct: 251  ------------------EETEDAAMARFLGGLNREIYDIVDYKDYTNMTRLFHLACKAE 292

Query: 975  NQLKRRGSTCPSQNPSTSAWKSNHWK 1052
             +++ R +   S   + SA K++ W+
Sbjct: 293  REVQGRRA---SAKANFSAGKTSSWQ 315



 Score = 89.0 bits (219), Expect(3) = e-100
 Identities = 42/91 (46%), Positives = 61/91 (67%)
 Frame = +3

Query: 1926 AKASEIKRAMFSNQPMIVLLYKEAYFNANQLNASLPSSVVSLLQDFDDIFPKEIPNGLPP 2105
            A  S+I   + S      L+ K+A  + + +  SLP +V ++LQ++ D+FPKE+P GLPP
Sbjct: 622  ATKSDINELIASPSVAYALVCKDALISLHDMQHSLPPAVANILQEYSDVFPKEVPPGLPP 681

Query: 2106 IRGIEHQIDFVLGATIPN*PA*RSNPE*TKE 2198
            +RGIEHQID + GA++PN    R+NPE TKE
Sbjct: 682  VRGIEHQIDLIPGASLPNRAPYRTNPEETKE 712


>gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare]
          Length = 1720

 Score =  815 bits (2104), Expect(3) = 0.0
 Identities = 386/596 (64%), Positives = 479/596 (80%), Gaps = 1/596 (0%)
 Frame = +1

Query: 2149 PFQTDQLKGVTPSRQRKVIELMEKGYVRENMSPCAVLVILVPKKDRLWRMCVDCRAINNI 2328
            P++T+  +  T    R+V EL++KGY+RE++SPCAV +ILVPKKD   RMCVDCR INNI
Sbjct: 782  PYRTNPEE--TKEIMRQVQELLDKGYIRESLSPCAVPIILVPKKDGTSRMCVDCRGINNI 839

Query: 2329 MVKYRHPIPRLDDMLDELHGSCVFSKIDLKSEYHRIRMKEGDEWKTKFKTKYGLYE*LVM 2508
             ++ RHPIPRLDDMLDEL GS +FSK+DL+S YH+IRMK GDEWKT FKTK+GLYE LVM
Sbjct: 840  TIRXRHPIPRLDDMLDELSGSIIFSKVDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVM 899

Query: 2509 PFGLINATSTFMRLMNHVLRAFIENFVVIYFDDILIYSQNLDDHLMHLKLVLDVLRKEKL 2688
            PFGL NA STFMRLMN VLRAFI  FVV+YFDDILIYS++L+DHL HL+ V   LR  +L
Sbjct: 900  PFGLTNAPSTFMRLMNEVLRAFIGRFVVVYFDDILIYSRSLEDHLDHLRAVFTALRDARL 959

Query: 2689 FANLKKCTFCTNKHVFLGFVTSTQGIQVDEEKIHAIQEWPSPTSVSNV*SFHGLASFYRR 2868
            F NL KCTFCT++  FLG+V + QGI+VD+ KI AI+ WP P +V+ V SF G A FYRR
Sbjct: 960  FGNLGKCTFCTDRVSFLGYVVTPQGIEVDKAKIEAIESWPQPKTVTQVRSFLGXAGFYRR 1019

Query: 2869 FVKDFNSIAAPITKVIKKNAGFKWGEEQEKAFQLIKQKLTHAPLHALPNFAKAFEIDCDA 3048
            FV+DF++IAAP+ ++ KK+  + WG  QE+AF ++K KLTHAPL  LP+F K FE++CDA
Sbjct: 1020 FVRDFSTIAAPLNELTKKDVPYSWGTAQEEAFTVLKDKLTHAPLLQLPDFNKTFELECDA 1079

Query: 3049 LGLGIGVVLIQEGRPLAYFSEKLSGAALNYPTYDKEMYALVRSLETWQYYLWPKEFVIHI 3228
             G+G+G VL+Q+G+P+AYFSEKLSG +LNY TYDKE+YALVR+LETWQ+YLWPKEFVIH 
Sbjct: 1080 SGIGLGGVLLQDGKPVAYFSEKLSGPSLNYSTYDKELYALVRTLETWQHYLWPKEFVIHS 1139

Query: 3229 DHESLKHLRGQHKLNKGRARWVEFFETFPYVIQYKQGKENIVADALSRRYILISTLDAKI 3408
            DHESLKH++ Q KLN+  A+WVEF ETFPYVI++K+GK+N++ADALSRRY ++S LD KI
Sbjct: 1140 DHESLKHIKSQAKLNRRHAKWVEFIETFPYVIKHKKGKDNVIADALSRRYTMLSQLDFKI 1199

Query: 3409 LGFEHIKELYPLDHDFNEEYESCEE-TTNGKYFRHEGFLFRENKLCIPNCSVRDLLVRES 3585
             G E IK+ Y  D DF +  E+C E  T  K+  + GF+FR NKLCIP  S+R LL++E+
Sbjct: 1200 FGLETIKDQYVHDADFKDVLENCREGRTWNKFIINNGFVFRANKLCIPASSIRLLLLQEA 1259

Query: 3586 HGGGLMGHFGVAKTLAILQEHFYWPHMKRDVERICGRCVTCRQAKSRVPPHGLYTPLPIP 3765
            HGGGLMGHFGV K   +L  HF+WP M+RDVER   RC TC++AKSR+ PHGLY PLP+P
Sbjct: 1260 HGGGLMGHFGVKKMEDVLATHFFWPRMRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVP 1319

Query: 3766 STPWIDISMDFMLGLPRSKRGRDSVFVVVDRFSKMAHFIPCHNMNDASHVADLLGR 3933
            S PW DISMDF+LGLPR+K+GRDS+FVVVDRFSKMAHFIPCH  +DA++VADL  R
Sbjct: 1320 SVPWEDISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDAANVADLFFR 1375



 Score =  174 bits (440), Expect(3) = 0.0
 Identities = 86/175 (49%), Positives = 116/175 (66%), Gaps = 3/175 (1%)
 Frame = +2

Query: 4172 AYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSERVNLDGKKKAEFVKQIHEKARLNI 4351
            AYN ++HS TK  PFEIVY F P  P+DL P+P SE+VN D K++AE + ++HE  + NI
Sbjct: 1457 AYNRSLHSTTKMCPFEIVYGFLPRAPIDLLPIPSSEKVNFDAKERAELILKMHELTKENI 1516

Query: 4352 E*RTEQYAKQANKGRHKIVFEAEDWVWLHMRKERFPAQRRSKLLPRGDGPFQVLEHINDN 4531
            E    +Y    +KGR  +VF   D VWLH+RK+RFP  R+SKL+PR  GPF+VLE INDN
Sbjct: 1517 ERMNARYKLAGDKGRKHVVFAPGDLVWLHLRKDRFPDLRKSKLMPRAGGPFKVLEKINDN 1576

Query: 4532 AYKLDLPGEYNVSATFNVSDLSPFDVGDD---WRTNPFQEEGNDANHGTVTRTQA 4687
            AY+L+LP ++ VS TFN++DL P+   +D    RT   QE  +D +  T+    A
Sbjct: 1577 AYRLELPADFGVSPTFNIADLKPYLGEEDELPSRTTSVQEGEDDEDINTIATPTA 1631



 Score =  146 bits (369), Expect(3) = 0.0
 Identities = 65/83 (78%), Positives = 74/83 (89%)
 Frame = +3

Query: 3921 FVREIVRLHGMPRTIVPDRDAKFLSYFWKTLWCKLGTKLLFSTTCHPQTDGQMEVVNRTL 4100
            F REI+RLHG+P TIV DRDAKFLS+FW+ LW KLGTKLLFSTTCHPQTDGQ EVVNR+L
Sbjct: 1373 FFREIIRLHGVPNTIVSDRDAKFLSHFWRCLWAKLGTKLLFSTTCHPQTDGQTEVVNRSL 1432

Query: 4101 STLLWAIIKKNIKTWEECLPHVE 4169
            ST+L A++K NIK WEECLPH+E
Sbjct: 1433 STMLRAVLKNNIKLWEECLPHIE 1455



 Score =  189 bits (480), Expect = 1e-44
 Identities = 99/238 (41%), Positives = 140/238 (58%), Gaps = 12/238 (5%)
 Frame = +2

Query: 1118 NQGKSDSSTSRNHDIKCFKCQGRGHIASQCPNKRVMVLRXXXXXXXXXXXXXXFMPPL-- 1291
            +   S +ST + H++ C +C+G GH A +CP+KRVM++                +  +  
Sbjct: 417  SSSSSTASTGQTHEVICRRCKGGGHYARECPSKRVMIITEDGGYDSASDYDEETLALIAS 476

Query: 1292 ------EDANDKEYAAQGG----DLLVARRALSVQAKEDGEVQLENIFHTRCHVQNKVCS 1441
                  + A + +Y A       + LVA+R LSVQ  +  + Q  N+FHT+  V+ +   
Sbjct: 477  EERGVADTAQETQYMAADYADRYESLVAQRVLSVQVTQVEQNQRHNLFHTKGVVKERSVR 536

Query: 1442 VIIDGGSCTNVASTIMVEKLGLQTTKHPRPYKLQWLNDSGEVKVNKQVLVSFCIGKYEDE 1621
            VIIDGGSC N+AS  MVEKL L T  HP PY +QW N+SG+VKV + V V F I  Y D 
Sbjct: 537  VIIDGGSCNNLASMEMVEKLSLTTRPHPHPYYIQWFNNSGKVKVTRTVRVHFSIATYSDF 596

Query: 1622 VLCDVVPMQAGHLLLGRPWQFDRRVKHDGSTNKYSFVLNQRTITLVPLTPKQVHEDQV 1795
            V CDVVPMQA  +LLGRPWQFD+   H G TN+Y+ V   + ITL+P++P+ + +D +
Sbjct: 597  VDCDVVPMQACSVLLGRPWQFDKNSVHHGRTNQYTLVHKDQNITLLPMSPEHIMKDDI 654



 Score =  120 bits (300), Expect = 9e-24
 Identities = 64/194 (32%), Positives = 101/194 (52%), Gaps = 2/194 (1%)
 Frame = +3

Query: 459  REDNNLSSIKMKIPLFQGKNDPEAYLEWEKKVELVFDCHNYSENKKVKLAAIEFSDYAFV 638
            R+ ++L  +K+ IP F G+  P+ YL WE + E  F C  + E+++V  A   F+ +A  
Sbjct: 180  RDHDHLPKVKLNIPSFDGRYVPDLYLTWELETEQRFTCLQFPEDRRVAAAVCSFTSFACX 239

Query: 639  W*DQLVLNRRRNRERPIETWEEMKTVMRKRFVPSYYYRELYNKLQSLKQGNRSXXXXXXX 818
            W  +       N      TW  +KT MR R+VP YY R+L   LQ L+QG +S       
Sbjct: 240  WWSEYCRIHHANIPA---TWAALKTAMRTRWVPPYYQRDLLQNLQRLRQGKKSVEEYYQE 296

Query: 819  XXXXXIRANVEEDREATMSRFLVGLNREIANAVELQHYVELEDMVHMAIKIENQLKRRGS 998
                 IR  + ED EA ++RF+ GLNR+I   +E + Y  +  + H+A K E +++ R +
Sbjct: 297  LQTGMIRCGIVEDNEAMLARFMGGLNRDIQTILEYKDYXTITRLFHLACKAEREVQDRQA 356

Query: 999  TCPSQNPS--TSAW 1034
               +   +  TS+W
Sbjct: 357  LARTNFSAGRTSSW 370



 Score = 85.9 bits (211), Expect = 2e-13
 Identities = 41/91 (45%), Positives = 60/91 (65%)
 Frame = +3

Query: 1926 AKASEIKRAMFSNQPMIVLLYKEAYFNANQLNASLPSSVVSLLQDFDDIFPKEIPNGLPP 2105
            A  S+I     +       + KE  F+   + +SLP +V+++LQ+F D+FP+++P GLPP
Sbjct: 702  ATKSDITDLDITTSVCYAFVCKEVLFSFEDMPSSLPPAVINILQEFADVFPQDVPPGLPP 761

Query: 2106 IRGIEHQIDFVLGATIPN*PA*RSNPE*TKE 2198
            IRGIEHQID + GA++PN    R+NPE TKE
Sbjct: 762  IRGIEHQIDLIPGASLPNRAPYRTNPEETKE 792


>gb|AAM15062.1| putative retroelement integrase [Arabidopsis thaliana]
          Length = 1215

 Score =  795 bits (2054), Expect(3) = 0.0
 Identities = 369/537 (68%), Positives = 449/537 (83%)
 Frame = +1

Query: 2275 KKDRLWRMCVDCRAINNIMVKYRHPIPRLDDMLDELHGSCVFSKIDLKSEYHRIRMKEGD 2454
            +KD  WRMC DCRAINN+ VKY HPIPRLDDMLDELHGS +FSKIDLKS YH+IRM EGD
Sbjct: 464  QKDGSWRMCFDCRAINNVTVKYCHPIPRLDDMLDELHGSSIFSKIDLKSGYHQIRMNEGD 523

Query: 2455 EWKTKFKTKYGLYE*LVMPFGLINATSTFMRLMNHVLRAFIENFVVIYFDDILIYSQNLD 2634
            EWKT FKTK+GLYE LVMPFGL +A STFMRLMNHVLRAFI  FV++YFDDIL+YS++L 
Sbjct: 524  EWKTAFKTKHGLYEWLVMPFGLTHAPSTFMRLMNHVLRAFIGIFVIVYFDDILVYSESLR 583

Query: 2635 DHLMHLKLVLDVLRKEKLFANLKKCTFCTNKHVFLGFVTSTQGIQVDEEKIHAIQEWPSP 2814
            +H+ HL  VL+VLRKE+L+ANLKKCTFCT+  VFLGFV S  G++VDEEK+ AI++WPSP
Sbjct: 584  EHIEHLDSVLNVLRKEELYANLKKCTFCTDNLVFLGFVVSADGVKVDEEKVKAIRDWPSP 643

Query: 2815 TSVSNV*SFHGLASFYRRFVKDFNSIAAPITKVIKKNAGFKWGEEQEKAFQLIKQKLTHA 2994
             +V  V SFHGLA FYRRF KDF++I AP+T+V+KK+ GFKW + QE+AFQ +K KLT+A
Sbjct: 644  KTVGEVRSFHGLAGFYRRFFKDFSTIVAPLTEVMKKDVGFKWEKAQEEAFQSLKDKLTNA 703

Query: 2995 PLHALPNFAKAFEIDCDALGLGIGVVLIQEGRPLAYFSEKLSGAALNYPTYDKEMYALVR 3174
            P+  L  F K FEI+CDA G+GIG VL+Q+ + +A+FSEKL GA LNYPTYDKE+YALVR
Sbjct: 704  PVLILSEFLKTFEIECDASGIGIGAVLMQDQKLIAFFSEKLGGATLNYPTYDKELYALVR 763

Query: 3175 SLETWQYYLWPKEFVIHIDHESLKHLRGQHKLNKGRARWVEFFETFPYVIQYKQGKENIV 3354
            +L+ WQ+YLWPK FVIH DHESLKHL+GQ KLNK  ARWVEF ETF YVI+YK+GK+N+V
Sbjct: 764  ALQRWQHYLWPKVFVIHTDHESLKHLKGQQKLNKRHARWVEFIETFAYVIKYKKGKDNVV 823

Query: 3355 ADALSRRYILISTLDAKILGFEHIKELYPLDHDFNEEYESCEETTNGKYFRHEGFLFREN 3534
            ADALS+RY L+STL+ K++GFE IKE+Y  DHDF E Y++CE+  +G+YFR + FLF EN
Sbjct: 824  ADALSQRYTLLSTLNVKLMGFEQIKEVYETDHDFQEVYKACEKFASGRYFRQDKFLFYEN 883

Query: 3535 KLCIPNCSVRDLLVRESHGGGLMGHFGVAKTLAILQEHFYWPHMKRDVERICGRCVTCRQ 3714
            +LC+PNCS+RDL VRE+HGGGLMGHFG+AKTL ++ EHF WPHMK DV+RICGRC TC+Q
Sbjct: 884  RLCVPNCSLRDLFVREAHGGGLMGHFGIAKTLEVMTEHFRWPHMKCDVKRICGRCNTCKQ 943

Query: 3715 AKSRVPPHGLYTPLPIPSTPWIDISMDFMLGLPRSKRGRDSVFVVVDRFSKMAHFIP 3885
            AKS++ P+GLYTPLPIP  PW DISMDF++GLPR+  G+DS+FVV   F  +  F P
Sbjct: 944  AKSKIQPNGLYTPLPIPKHPWNDISMDFVMGLPRT--GKDSIFVVYSPFQIVYGFNP 998



 Score =  246 bits (629), Expect(3) = 0.0
 Identities = 125/242 (51%), Positives = 165/242 (68%)
 Frame = +2

Query: 1094 KKEATSHGNQGKSDSSTSRNHDIKCFKCQGRGHIASQCPNKRVMVLRXXXXXXXXXXXXX 1273
            K  A    ++GK++ STSR  D++C+KCQG+GH A++CPNKRVM+L              
Sbjct: 135  KPYAAVQDHKGKAEISTSRVRDVRCYKCQGKGHYANECPNKRVMILLDNGEIEPEEEIPD 194

Query: 1274 XFMPPLEDANDKEYAAQGGDLLVARRALSVQAKEDGEVQLENIFHTRCHVQNKVCSVIID 1453
                P     ++E  AQG +LLVARR LSVQ K D + Q +N+FHTRCHV  KVCS+IID
Sbjct: 195  S---PSSLKENEELPAQG-ELLVARRTLSVQTKTDEQEQRKNLFHTRCHVHGKVCSLIID 250

Query: 1454 GGSCTNVASTIMVEKLGLQTTKHPRPYKLQWLNDSGEVKVNKQVLVSFCIGKYEDEVLCD 1633
            GGSCTNVAS  MV+KLGL+           WLNDSG+++V  QV+V   IGKYEDE+LCD
Sbjct: 251  GGSCTNVASETMVKKLGLK-----------WLNDSGKMRVKNQVVVPIVIGKYEDEILCD 299

Query: 1634 VVPMQAGHLLLGRPWQFDRRVKHDGSTNKYSFVLNQRTITLVPLTPKQVHEDQVILQKES 1813
            V+PM+AGH+LLGRPWQ DR+V HDG TN++SF        LV +TP +V++DQ+ L+++ 
Sbjct: 300  VLPMEAGHILLGRPWQSDRKVMHDGFTNRHSFEFKGGKTILVSMTPHEVYQDQIHLKQKK 359

Query: 1814 EK 1819
            E+
Sbjct: 360  EQ 361



 Score =  112 bits (279), Expect(3) = 0.0
 Identities = 53/97 (54%), Positives = 71/97 (73%)
 Frame = +3

Query: 1908 RKTNFYAKASEIKRAMFSNQPMIVLLYKEAYFNANQLNASLPSSVVSLLQDFDDIFPKEI 2087
            ++ NF+AK+ E+K A  S QPM++ ++KEA  +       LPS + SLLQD+ D+FP++ 
Sbjct: 364  KQPNFFAKSGEVKSAYSSKQPMLLFVFKEALTSLTNFAPVLPSEMTSLLQDYKDVFPEDN 423

Query: 2088 PNGLPPIRGIEHQIDFVLGATIPN*PA*RSNPE*TKE 2198
            P GLPPIRGIEHQIDFV GA++PN PA R+NP  TKE
Sbjct: 424  PKGLPPIRGIEHQIDFVPGASLPNRPAYRTNPVETKE 460



 Score =  180 bits (457), Expect = 5e-42
 Identities = 88/150 (58%), Positives = 111/150 (74%)
 Frame = +2

Query: 4205 FLPFEIVYCFNPLTPLDLSPLPMSERVNLDGKKKAEFVKQIHEKARLNIE*RTEQYAKQA 4384
            + PF+IVY FNP++P DL PLP+SERV++DGKKKAE V+QIHE AR NIE +T+ YAKQA
Sbjct: 987  YSPFQIVYGFNPISPFDLIPLPLSERVSIDGKKKAELVQQIHENARRNIEEKTKLYAKQA 1046

Query: 4385 NKGRHKIVFEAEDWVWLHMRKERFPAQRRSKLLPRGDGPFQVLEHINDNAYKLDLPGEYN 4564
            NKGR + +FE  D VW+H+RKERFPAQR+SKL+PR DGPF++++ INDNAY+LDL  E  
Sbjct: 1047 NKGRREQIFEVGDMVWIHLRKERFPAQRKSKLMPRIDGPFKIIKRINDNAYQLDLQDE-- 1104

Query: 4565 VSATFNVSDLSPFDVGDDWRTNPFQEEGND 4654
                             D R+NPFQE G+D
Sbjct: 1105 ----------------PDLRSNPFQEGGDD 1118



 Score =  110 bits (274), Expect = 9e-21
 Identities = 55/109 (50%), Positives = 76/109 (69%)
 Frame = +3

Query: 705  MKTVMRKRFVPSYYYRELYNKLQSLKQGNRSXXXXXXXXXXXXIRANVEEDREATMSRFL 884
            MK +MRKRFVPS+Y+REL+ KL++L QGNRS            +RA++ EDREAT+SRFL
Sbjct: 1    MKAIMRKRFVPSHYHRELHLKLRNLTQGNRSVEEYYKEMETLMLRADISEDREATLSRFL 60

Query: 885  VGLNREIANAVELQHYVELEDMVHMAIKIENQLKRRGSTCPSQNPSTSA 1031
              LNR+I + +E Q+YV++E+M+H AI  E Q+KR+ S+  S    T A
Sbjct: 61   GDLNRDIQDRLETQYYVQIEEMLHKAILFEQQVKRKSSSRSSYGSGTIA 109


>gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum demissum]
          Length = 1588

 Score =  789 bits (2038), Expect(3) = 0.0
 Identities = 382/582 (65%), Positives = 457/582 (78%)
 Frame = +1

Query: 2179 TPSRQRKVIELMEKGYVRENMSPCAVLVILVPKKDRLWRMCVDCRAINNIMVKYRHPIPR 2358
            T   QR+V EL+ KG+VRE+MSPC+V V+LVPKKD  WRMCVDCRAIN I VKYRHPIPR
Sbjct: 714  TKELQRQVEELLVKGFVRESMSPCSVPVLLVPKKDGTWRMCVDCRAINKITVKYRHPIPR 773

Query: 2359 LDDMLDELHGSCVFSKIDLKSEYHRIRMKEGDEWKTKFKTKYGLYE*LVMPFGLINATST 2538
            LDDMLD+L GS +FSKIDLKS YH+IR+  GDEWKT FKTKYGLYE LVMPFGL NA ST
Sbjct: 774  LDDMLDQLCGSKIFSKIDLKSGYHQIRLNPGDEWKTAFKTKYGLYEWLVMPFGLTNAPST 833

Query: 2539 FMRLMNHVLRAFIENFVVIYFDDILIYSQNLDDHLMHLKLVLDVLRKEKLFANLKKCTFC 2718
            FMRLMNHV + F   F+V+YFDDILI+SQNLD+HL HLK V +VLR ++LFANLKKCTFC
Sbjct: 834  FMRLMNHVFKDFHGKFIVVYFDDILIFSQNLDEHLEHLKKVFEVLRNQRLFANLKKCTFC 893

Query: 2719 TNKHVFLGFVTSTQGIQVDEEKIHAIQEWPSPTSVSNV*SFHGLASFYRRFVKDFNSIAA 2898
             ++ VFLGFV S+ G++VD+EKI AI+EWP P SV+ V SFHGLASFYRRFV+DF++IAA
Sbjct: 894  VDRVVFLGFVVSSMGVEVDDEKIKAIKEWPKPNSVTEVRSFHGLASFYRRFVRDFSTIAA 953

Query: 2899 PITKVIKKNAGFKWGEEQEKAFQLIKQKLTHAPLHALPNFAKAFEIDCDALGLGIGVVLI 3078
            P+T+VIKK+  F WG+EQ+ AF L+K KL  APL  LP+F+K+FE++CDA G GIG VL+
Sbjct: 954  PLTEVIKKDKVFTWGKEQDDAFNLLKDKLCSAPLLQLPDFSKSFEVECDASGKGIGAVLM 1013

Query: 3079 QEGRPLAYFSEKLSGAALNYPTYDKEMYALVRSLETWQYYLWPKEFVIHIDHESLKHLRG 3258
            Q+ +P+AYFSEKLSGA LNY T DKE+YAL                              
Sbjct: 1014 QDSKPIAYFSEKLSGATLNYSTNDKELYAL-----------------------------S 1044

Query: 3259 QHKLNKGRARWVEFFETFPYVIQYKQGKENIVADALSRRYILISTLDAKILGFEHIKELY 3438
            Q KL++  A+WVEF ETFPYVI YKQGKEN+VADALSRRY+LISTL +K+LGF+ IK LY
Sbjct: 1045 QGKLSRRHAKWVEFIETFPYVIAYKQGKENVVADALSRRYVLISTLTSKLLGFDQIKFLY 1104

Query: 3439 PLDHDFNEEYESCEETTNGKYFRHEGFLFRENKLCIPNCSVRDLLVRESHGGGLMGHFGV 3618
              D DF E +  C+     K+   + FLF+ENKLC+PNCS+R+L VRE+H GGLMGHFGV
Sbjct: 1105 ANDSDFGEIFAECKLGPFEKFNLQDEFLFKENKLCVPNCSLRELFVREAHCGGLMGHFGV 1164

Query: 3619 AKTLAILQEHFYWPHMKRDVERICGRCVTCRQAKSRVPPHGLYTPLPIPSTPWIDISMDF 3798
             KTL IL EHFYWP M++DVE++C  C+ C+QAKSR  PHGLYTPLP+ ++PWIDISMDF
Sbjct: 1165 PKTLEILSEHFYWPSMRKDVEKVCSYCLECKQAKSRTLPHGLYTPLPVSNSPWIDISMDF 1224

Query: 3799 MLGLPRSKRGRDSVFVVVDRFSKMAHFIPCHNMNDASHVADL 3924
            +LGLPR+K G+DS+FVVVDRFSKMA FIPC   NDASHVADL
Sbjct: 1225 ILGLPRTKYGKDSIFVVVDRFSKMARFIPCKKTNDASHVADL 1266



 Score =  221 bits (562), Expect(3) = 0.0
 Identities = 111/199 (55%), Positives = 141/199 (70%), Gaps = 17/199 (8%)
 Frame = +2

Query: 4172 AYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSERVNLDGKKKAEFVKQIHEKARLNI 4351
            AYN T HS+T   PFE+VY FNPLTPLDL PLP ++  NLDGKKKA+ +K+IHE+ RL I
Sbjct: 1351 AYNRTFHSSTGKTPFEVVYGFNPLTPLDLLPLPTNDFANLDGKKKADMMKKIHEQTRLAI 1410

Query: 4352 E*RTEQYAKQANKGRHKIVFEAEDWVWLHMRKERFPAQRRSKLLPRGDGPFQVLEHINDN 4531
            E + ++ A + NKGR  ++F+  D VW+HMRKERFP++R++KL PRG GP++VLE I DN
Sbjct: 1411 EKKNKEVALRRNKGRKYVIFKPGDLVWVHMRKERFPSKRKTKLDPRGSGPYKVLERIGDN 1470

Query: 4532 AYKLDLPGEYNVSATFNVSDLSPFDVGDDWRTNPFQEEGNDANHGT-------------- 4669
            AYKLDLPGE+ VSATFNVSDLS +D   D RTN  QEEGND+  G+              
Sbjct: 1471 AYKLDLPGEFQVSATFNVSDLSHYDADLDSRTNSLQEEGNDSIQGSSTPLKDKDDALETP 1530

Query: 4670 ---VTRTQANKFKDALSGL 4717
               +TR+Q  +F D L+GL
Sbjct: 1531 RRPITRSQTKEFNDKLNGL 1549



 Score =  129 bits (324), Expect(3) = 0.0
 Identities = 59/83 (71%), Positives = 71/83 (85%)
 Frame = +3

Query: 3921 FVREIVRLHGMPRTIVPDRDAKFLSYFWKTLWCKLGTKLLFSTTCHPQTDGQMEVVNRTL 4100
            FV+E+V+LHG+PRTIV DRDAKFLS+FW+ LW KLGTKLLFST+CHPQTDGQ EVVNRTL
Sbjct: 1267 FVKEVVKLHGIPRTIVSDRDAKFLSHFWRILWGKLGTKLLFSTSCHPQTDGQTEVVNRTL 1326

Query: 4101 STLLWAIIKKNIKTWEECLPHVE 4169
              +L AI+K  + +WE+ LP VE
Sbjct: 1327 GNMLRAILKGKLTSWEDYLPIVE 1349



 Score =  216 bits (551), Expect(2) = e-108
 Identities = 110/251 (43%), Positives = 151/251 (60%)
 Frame = +2

Query: 1073 DEAKNRVKKEATSHGNQGKSDSSTSRNHDIKCFKCQGRGHIASQCPNKRVMVLRXXXXXX 1252
            D  K +V+K     G +  +  S+  +  I+C KC GRGH+  +CP++R ++LR      
Sbjct: 318  DRGKGKVEK-----GGKTFNPKSSKPSSSIQCHKCHGRGHMMHECPSRRNILLRENGEYE 372

Query: 1253 XXXXXXXXFMPPLEDANDKEYAAQGGDLLVARRALSVQAKEDGEVQLENIFHTRCHVQNK 1432
                             D       G + V RR +++      E Q EN+FHTRC ++ K
Sbjct: 373  SEKSEREEEEGEGVSEEDDLELPNDGIIGVVRRIMTINLGSVDEGQRENLFHTRCGIKGK 432

Query: 1433 VCSVIIDGGSCTNVASTIMVEKLGLQTTKHPRPYKLQWLNDSGEVKVNKQVLVSFCIGKY 1612
              S+IIDGGSC NV S+ +V+KLG+   K   PY+LQWLND GEV+VNKQ ++SF +G+Y
Sbjct: 433  TYSMIIDGGSCANVVSSYLVDKLGIACMKRSTPYRLQWLNDCGEVQVNKQCMISFNVGRY 492

Query: 1613 EDEVLCDVVPMQAGHLLLGRPWQFDRRVKHDGSTNKYSFVLNQRTITLVPLTPKQVHEDQ 1792
            EDE+LCDVVPMQA H+LLGRPWQ+DR   H G  N+YS + N +  TL PL+P QV EDQ
Sbjct: 493  EDEILCDVVPMQACHVLLGRPWQYDRDTTHHGRKNRYSLLHNGKKYTLAPLSPSQVFEDQ 552

Query: 1793 VILQKESEKKK 1825
              L++   K+K
Sbjct: 553  KRLRETMGKQK 563



 Score =  205 bits (522), Expect(2) = e-108
 Identities = 105/218 (48%), Positives = 146/218 (66%), Gaps = 2/218 (0%)
 Frame = +3

Query: 444  RGARNR-EDNNLSSIKMKIPLFQGKNDPEAYLEWEKKVELVFDCHNYSENKKVKLAAIEF 620
            RG R R ED+N++SIKMK+  F+G  DP+ YL+WE++VE +FDCHNYSE KKVKLA +EF
Sbjct: 103  RGQRGRVEDDNINSIKMKMSSFKGTRDPDLYLDWERRVEAIFDCHNYSEGKKVKLAVVEF 162

Query: 621  SDYAFVW*DQLVLNRRRNRERPIETWEEMKTVMRKRFVPSYYYRELYNKLQSLKQGNRSX 800
            SDYA  W  +L  +R +    PI TW EMK VMRKRF+PSY+ R+L ++LQ LKQG+ S 
Sbjct: 163  SDYAASWWKKLARDRLQEELPPIATWAEMKRVMRKRFIPSYFQRDLQSRLQRLKQGSMSV 222

Query: 801  XXXXXXXXXXXIRANVEEDREATMSRFLVGLNREIANAVELQHYVELEDMVHMAIKIENQ 980
                       I+AN  E+ EAT++RFL GLN EIAN VE+Q YV L+++V +++K+E Q
Sbjct: 223  DEYFKSMDMAMIQANCMEEEEATIARFLNGLNTEIANVVEIQQYVTLDELVDLSVKVEKQ 282

Query: 981  L-KRRGSTCPSQNPSTSAWKSNHWKKDEKQLMMKPKTE 1091
            + K++ +      P+T + K   W   E +   KP+ +
Sbjct: 283  IEKKQQNNSWRSRPNTISKKP--WSTQEGKAPSKPQDD 318



 Score =  114 bits (284), Expect = 6e-22
 Identities = 57/102 (55%), Positives = 70/102 (68%)
 Frame = +3

Query: 1893 ERKTERKTNFYAKASEIKRAMFSNQPMIVLLYKEAYFNANQLNASLPSSVVSLLQDFDDI 2072
            E K ++  + Y KA E   A     P+I+L YKE   N  QL  SLP+SV SLLQ+F+D+
Sbjct: 615  EAKEKKNESLYIKAKECLNARREGLPIILLTYKEILINFEQLTPSLPNSVSSLLQNFEDV 674

Query: 2073 FPKEIPNGLPPIRGIEHQIDFVLGATIPN*PA*RSNPE*TKE 2198
            FP + P GLPP+RGIEHQIDFV G+ +PN PA RSNPE TKE
Sbjct: 675  FPDDTPKGLPPLRGIEHQIDFVPGSQLPNRPAYRSNPEETKE 716


>gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum demissum]
          Length = 1588

 Score =  788 bits (2035), Expect(3) = 0.0
 Identities = 382/582 (65%), Positives = 456/582 (78%)
 Frame = +1

Query: 2179 TPSRQRKVIELMEKGYVRENMSPCAVLVILVPKKDRLWRMCVDCRAINNIMVKYRHPIPR 2358
            T   QR+V EL+ KG+VRE+MSPC+V V+LVPKKD  WRMCVDCRAIN I VKYRHPIPR
Sbjct: 714  TKELQRQVEELLVKGFVRESMSPCSVPVLLVPKKDGTWRMCVDCRAINKITVKYRHPIPR 773

Query: 2359 LDDMLDELHGSCVFSKIDLKSEYHRIRMKEGDEWKTKFKTKYGLYE*LVMPFGLINATST 2538
            LDDMLD+L GS +FSKIDLKS YH+IR+  GDEWKT FKTKYGLYE LVMPFGL NA ST
Sbjct: 774  LDDMLDQLCGSKIFSKIDLKSGYHQIRLNPGDEWKTAFKTKYGLYEWLVMPFGLTNAPST 833

Query: 2539 FMRLMNHVLRAFIENFVVIYFDDILIYSQNLDDHLMHLKLVLDVLRKEKLFANLKKCTFC 2718
            FMRLMNHV + F   F+V+YFDDILI+SQNLD+HL HLK V +VLR ++LFANLKKCTFC
Sbjct: 834  FMRLMNHVFKDFHGKFIVVYFDDILIFSQNLDEHLEHLKKVFEVLRNQRLFANLKKCTFC 893

Query: 2719 TNKHVFLGFVTSTQGIQVDEEKIHAIQEWPSPTSVSNV*SFHGLASFYRRFVKDFNSIAA 2898
             ++ VFLGFV S+ G++VD+EKI AI+EWP P SV+ V SFHGLASFYRRFV+DF++IAA
Sbjct: 894  VDRVVFLGFVVSSMGVEVDDEKIKAIKEWPKPNSVTEVRSFHGLASFYRRFVRDFSTIAA 953

Query: 2899 PITKVIKKNAGFKWGEEQEKAFQLIKQKLTHAPLHALPNFAKAFEIDCDALGLGIGVVLI 3078
            P+T+VIKK+  F WG+EQ+ AF L+K KL  APL  LP+F+K+FE++CDA G GIG VL+
Sbjct: 954  PLTEVIKKDKVFTWGKEQDDAFNLLKDKLCSAPLLQLPDFSKSFEVECDASGKGIGAVLM 1013

Query: 3079 QEGRPLAYFSEKLSGAALNYPTYDKEMYALVRSLETWQYYLWPKEFVIHIDHESLKHLRG 3258
            Q+ +P+AYFSEKLSGA LNY T DKE+YAL                              
Sbjct: 1014 QDSKPIAYFSEKLSGATLNYSTNDKELYAL-----------------------------S 1044

Query: 3259 QHKLNKGRARWVEFFETFPYVIQYKQGKENIVADALSRRYILISTLDAKILGFEHIKELY 3438
            Q KL++  A+WVEF ETFPYVI YKQGKEN+VADALSRRY+LISTL +K+LGF+ IK LY
Sbjct: 1045 QGKLSRRHAKWVEFIETFPYVIAYKQGKENVVADALSRRYVLISTLTSKLLGFDQIKFLY 1104

Query: 3439 PLDHDFNEEYESCEETTNGKYFRHEGFLFRENKLCIPNCSVRDLLVRESHGGGLMGHFGV 3618
              D DF E +  C+     K+   + FLF+ENKLC+PNCS+R+L VRE+H GGLMGHFGV
Sbjct: 1105 ANDSDFGEIFAECKLGPFEKFNLQDEFLFKENKLCVPNCSLRELFVREAHCGGLMGHFGV 1164

Query: 3619 AKTLAILQEHFYWPHMKRDVERICGRCVTCRQAKSRVPPHGLYTPLPIPSTPWIDISMDF 3798
             KTL IL EHFYWP M++DVE++C  C+ C+QAKSR  PHGLYTPLP+ + PWIDISMDF
Sbjct: 1165 PKTLEILSEHFYWPSMRKDVEKVCSYCLECKQAKSRTLPHGLYTPLPVSNFPWIDISMDF 1224

Query: 3799 MLGLPRSKRGRDSVFVVVDRFSKMAHFIPCHNMNDASHVADL 3924
            +LGLPR+K G+DS+FVVVDRFSKMA FIPC   NDASHVADL
Sbjct: 1225 ILGLPRTKYGKDSIFVVVDRFSKMARFIPCKKTNDASHVADL 1266



 Score =  221 bits (562), Expect(3) = 0.0
 Identities = 111/199 (55%), Positives = 141/199 (70%), Gaps = 17/199 (8%)
 Frame = +2

Query: 4172 AYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSERVNLDGKKKAEFVKQIHEKARLNI 4351
            AYN T HS+T   PFE+VY FNPLTPLDL PLP ++  NLDGKKKA+ +K+IHE+ RL I
Sbjct: 1351 AYNRTFHSSTGKTPFEVVYGFNPLTPLDLLPLPTNDFANLDGKKKADMMKKIHEQTRLAI 1410

Query: 4352 E*RTEQYAKQANKGRHKIVFEAEDWVWLHMRKERFPAQRRSKLLPRGDGPFQVLEHINDN 4531
            E + ++ A + NKGR  ++F+  D VW+HMRKERFP++R++KL PRG GP++VLE I DN
Sbjct: 1411 EKKNKEVALRRNKGRKYVIFKPGDLVWVHMRKERFPSKRKTKLDPRGSGPYKVLERIGDN 1470

Query: 4532 AYKLDLPGEYNVSATFNVSDLSPFDVGDDWRTNPFQEEGNDANHGT-------------- 4669
            AYKLDLPGE+ VSATFNVSDLS +D   D RTN  QEEGND+  G+              
Sbjct: 1471 AYKLDLPGEFQVSATFNVSDLSHYDADLDSRTNSLQEEGNDSIQGSSTPLKDKDDALETP 1530

Query: 4670 ---VTRTQANKFKDALSGL 4717
               +TR+Q  +F D L+GL
Sbjct: 1531 RRPITRSQTKEFNDKLNGL 1549



 Score =  129 bits (324), Expect(3) = 0.0
 Identities = 59/83 (71%), Positives = 71/83 (85%)
 Frame = +3

Query: 3921 FVREIVRLHGMPRTIVPDRDAKFLSYFWKTLWCKLGTKLLFSTTCHPQTDGQMEVVNRTL 4100
            FV+E+V+LHG+PRTIV DRDAKFLS+FW+ LW KLGTKLLFST+CHPQTDGQ EVVNRTL
Sbjct: 1267 FVKEVVKLHGIPRTIVSDRDAKFLSHFWRILWGKLGTKLLFSTSCHPQTDGQTEVVNRTL 1326

Query: 4101 STLLWAIIKKNIKTWEECLPHVE 4169
              +L AI+K  + +WE+ LP VE
Sbjct: 1327 GNMLRAILKGKLTSWEDYLPIVE 1349



 Score =  216 bits (551), Expect(2) = e-108
 Identities = 110/251 (43%), Positives = 151/251 (60%)
 Frame = +2

Query: 1073 DEAKNRVKKEATSHGNQGKSDSSTSRNHDIKCFKCQGRGHIASQCPNKRVMVLRXXXXXX 1252
            D  K +V+K     G +  +  S+  +  I+C KC GRGH+  +CP++R ++LR      
Sbjct: 318  DRGKGKVEK-----GGKTFNPKSSKPSSSIQCHKCHGRGHMMHECPSRRNILLRENGEYE 372

Query: 1253 XXXXXXXXFMPPLEDANDKEYAAQGGDLLVARRALSVQAKEDGEVQLENIFHTRCHVQNK 1432
                             D       G + V RR +++      E Q EN+FHTRC ++ K
Sbjct: 373  SEKSEREEEEGEGVSEEDDLELPNDGIIGVVRRIMTINLGSVDEGQRENLFHTRCGIKGK 432

Query: 1433 VCSVIIDGGSCTNVASTIMVEKLGLQTTKHPRPYKLQWLNDSGEVKVNKQVLVSFCIGKY 1612
              S+IIDGGSC NV S+ +V+KLG+   K   PY+LQWLND GEV+VNKQ ++SF +G+Y
Sbjct: 433  TYSMIIDGGSCANVVSSYLVDKLGIACMKRSTPYRLQWLNDCGEVQVNKQCMISFNVGRY 492

Query: 1613 EDEVLCDVVPMQAGHLLLGRPWQFDRRVKHDGSTNKYSFVLNQRTITLVPLTPKQVHEDQ 1792
            EDE+LCDVVPMQA H+LLGRPWQ+DR   H G  N+YS + N +  TL PL+P QV EDQ
Sbjct: 493  EDEILCDVVPMQACHVLLGRPWQYDRDTTHHGRKNRYSLLHNGKKYTLAPLSPSQVFEDQ 552

Query: 1793 VILQKESEKKK 1825
              L++   K+K
Sbjct: 553  KRLRETMGKQK 563



 Score =  205 bits (522), Expect(2) = e-108
 Identities = 105/218 (48%), Positives = 146/218 (66%), Gaps = 2/218 (0%)
 Frame = +3

Query: 444  RGARNR-EDNNLSSIKMKIPLFQGKNDPEAYLEWEKKVELVFDCHNYSENKKVKLAAIEF 620
            RG R R ED+N++SIKMK+  F+G  DP+ YL+WE++VE +FDCHNYSE KKVKLA +EF
Sbjct: 103  RGQRGRVEDDNINSIKMKMSSFKGTRDPDLYLDWERRVEAIFDCHNYSEGKKVKLAVVEF 162

Query: 621  SDYAFVW*DQLVLNRRRNRERPIETWEEMKTVMRKRFVPSYYYRELYNKLQSLKQGNRSX 800
            SDYA  W  +L  +R +    PI TW EMK VMRKRF+PSY+ R+L ++LQ LKQG+ S 
Sbjct: 163  SDYAASWWKKLARDRLQEELPPIATWAEMKRVMRKRFIPSYFQRDLQSRLQRLKQGSMSV 222

Query: 801  XXXXXXXXXXXIRANVEEDREATMSRFLVGLNREIANAVELQHYVELEDMVHMAIKIENQ 980
                       I+AN  E+ EAT++RFL GLN EIAN VE+Q YV L+++V +++K+E Q
Sbjct: 223  DEYFKSMDMAMIQANCMEEEEATIARFLNGLNTEIANVVEIQQYVTLDELVDLSVKVEKQ 282

Query: 981  L-KRRGSTCPSQNPSTSAWKSNHWKKDEKQLMMKPKTE 1091
            + K++ +      P+T + K   W   E +   KP+ +
Sbjct: 283  IEKKQQNNSWRSRPNTISKKP--WSTQEGKAPSKPQDD 318



 Score =  114 bits (284), Expect = 6e-22
 Identities = 57/102 (55%), Positives = 70/102 (68%)
 Frame = +3

Query: 1893 ERKTERKTNFYAKASEIKRAMFSNQPMIVLLYKEAYFNANQLNASLPSSVVSLLQDFDDI 2072
            E K ++  + Y KA E   A     P+I+L YKE   N  QL  SLP+SV SLLQ+F+D+
Sbjct: 615  EAKEKKNESLYIKAKECLNARREGLPIILLTYKEILINFEQLTPSLPNSVSSLLQNFEDV 674

Query: 2073 FPKEIPNGLPPIRGIEHQIDFVLGATIPN*PA*RSNPE*TKE 2198
            FP + P GLPP+RGIEHQIDFV G+ +PN PA RSNPE TKE
Sbjct: 675  FPDDTPKGLPPLRGIEHQIDFVPGSQLPNRPAYRSNPEETKE 716


>gb|ADP20179.1| gag-pol polyprotein [Silene latifolia]
          Length = 1475

 Score =  717 bits (1851), Expect(5) = 0.0
 Identities = 340/585 (58%), Positives = 446/585 (76%), Gaps = 3/585 (0%)
 Frame = +1

Query: 2179 TPSRQRKVIELMEKGYVRENMSPCAVLVILVPKKDRLWRMCVDCRAINNIMVKYRHPIPR 2358
            T   Q+++ EL+ KG+VRE++SPC+V  +LVPKKD  WRMC D RAINNI +KYR PIPR
Sbjct: 617  TQELQQQIGELVSKGFVRESLSPCSVPALLVPKKDGSWRMCTDSRAINNITIKYRFPIPR 676

Query: 2359 LDDMLDELHGSCVFSKIDLKSEYHRIRMKEGDEWKTKFKTKYGLYE*LVMPFGLINATST 2538
            LDD+LDEL G+ +FSKIDL+  YH++R+KEGDEWKT FKTK+GLYE LVMPFGL NA ST
Sbjct: 677  LDDILDELSGAQLFSKIDLRQGYHQVRIKEGDEWKTAFKTKHGLYEWLVMPFGLSNAPST 736

Query: 2539 FMRLMNHVLRAFIENFVVIYFDDILIYSQNLDDHLMHLKLVLDVLRKEKLFANLKKCTFC 2718
            FMRLM  VLR ++  FVV+YFDDIL+YS + ++HL HL+++ + LR+ KL+  L+KC+F 
Sbjct: 737  FMRLMTEVLRPYLGRFVVVYFDDILVYSPSKEEHLKHLQVLFETLREHKLYGKLEKCSFM 796

Query: 2719 TNKHVFLGFVTSTQGIQVDEEKIHAIQEWPSPTSVSNV*SFHGLASFYRRFVKDFNSIAA 2898
             N+  FLGF+ S +GI VD+EK+ AI+ WP P ++++V SFHGLASFYRRF+KDF+++ A
Sbjct: 797  QNEVQFLGFIISDRGILVDQEKVKAIKSWPIPKNITDVRSFHGLASFYRRFIKDFSTLMA 856

Query: 2899 PITKVIKKNAGFKWGEEQEKAFQLIKQKLTHAPLHALPNFAKAFEIDCDALGLGIGVVLI 3078
            PIT+ +KK   FKWG++ E +F +IK+KL  +P+  LPNF K FE++CDA G+GIG VL+
Sbjct: 857  PITECMKKGE-FKWGDKAESSFNIIKEKLCESPILTLPNFNKLFEVECDASGIGIGAVLV 915

Query: 3079 QEGRPLAYFSEKLSGAALNYPTYDKEMYALVRSLETWQYYLWPKEFVIHIDHESLKHLRG 3258
            QE +P+AYFSEKLSGA LNY TYDKE YA+VR+L  W +YL P+ FV+H DHE+LK++ G
Sbjct: 916  QEHKPIAYFSEKLSGAKLNYSTYDKEFYAIVRALNHWSHYLKPRPFVLHSDHEALKYING 975

Query: 3259 QHKLNKGRARWVEFFETFPYVIQYKQGKENIVADALSRRYILISTLDAKILGFEHIKELY 3438
            QHKLN   A+WVEF ++F +  +Y +GK+NIVADALSRR+I++S ++ ++LGFE++KELY
Sbjct: 976  QHKLNHRHAKWVEFLQSFNFSSKYIEGKDNIVADALSRRFIMLSFMEQRVLGFEYMKELY 1035

Query: 3439 PLDHDFNEEYE---SCEETTNGKYFRHEGFLFRENKLCIPNCSVRDLLVRESHGGGLMGH 3609
              D DF  E+E   S +     KY    GFLF  NKLC+P    R+LL+RE H  GL GH
Sbjct: 1036 VEDPDFKGEWELLQSGQIKLKSKYLVQNGFLFFGNKLCVPRGPYRNLLIREVHSNGLAGH 1095

Query: 3610 FGVAKTLAILQEHFYWPHMKRDVERICGRCVTCRQAKSRVPPHGLYTPLPIPSTPWIDIS 3789
            FG+ KT  ILQE FYWP M  DV+ +  RC  C+Q+KS     G YTPLP+P+ PW DIS
Sbjct: 1096 FGIQKTYDILQEQFYWPKMLGDVQDVIKRCAPCQQSKSYFQT-GPYTPLPVPNQPWEDIS 1154

Query: 3790 MDFMLGLPRSKRGRDSVFVVVDRFSKMAHFIPCHNMNDASHVADL 3924
            MDF++ LPR++RG+DS+ VVVDRFSKMAHFI C    DA+ VA+L
Sbjct: 1155 MDFIVALPRTQRGKDSIMVVVDRFSKMAHFIACKKTEDATSVAEL 1199



 Score =  183 bits (465), Expect(5) = 0.0
 Identities = 96/225 (42%), Positives = 127/225 (56%), Gaps = 2/225 (0%)
 Frame = +2

Query: 1163 KCFKCQGRGHIASQCPNKRVMV-LRXXXXXXXXXXXXXXFMPPLEDANDKEYAAQGGDLL 1339
            KC++CQG GH A +CP KR +                   +   +   D       G  L
Sbjct: 308  KCYQCQGYGHFAKECPTKRALSSFEVVHWGDDEILVCDEEVEGTDHEEDDVVMPDAGLSL 367

Query: 1340 VARRALSVQAKEDGEVQLENIFHTRCHVQNKVCSVIIDGGSCTNVASTIMVEKLGLQTTK 1519
            V  R +  Q +     Q + IF +RC ++ +VC++IIDGGSCTNVAS+ ++EKL L T  
Sbjct: 368  VTWRVMHTQPQPLEMDQRQQIFRSRCTIKGRVCNLIIDGGSCTNVASSTLIEKLSLPTQD 427

Query: 1520 HPRPYKLQWLNDSGEVKVNKQVLVSFCIGK-YEDEVLCDVVPMQAGHLLLGRPWQFDRRV 1696
            HP PYKL+WLN   EV+V+KQ LV+F IGK Y DE LCDV+PM A HLLLGRPW+FDR  
Sbjct: 428  HPSPYKLRWLNKGAEVRVDKQCLVTFSIGKNYSDEALCDVLPMDACHLLLGRPWEFDRDS 487

Query: 1697 KHDGSTNKYSFVLNQRTITLVPLTPKQVHEDQVILQKESEKKKMI 1831
             H G  N Y+F    R + L PL P   H     + + S++  +I
Sbjct: 488  VHHGRDNTYTFKFRSRKVILTPLPPVLKHTTPPSMLEPSKEVLLI 532



 Score =  147 bits (371), Expect(5) = 0.0
 Identities = 82/182 (45%), Positives = 111/182 (60%), Gaps = 14/182 (7%)
 Frame = +2

Query: 4172 AYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSERVNLDGKKKAEFVKQIHEKARLNI 4351
            A+N    + T   PFE+VY  NP+ P DL+P+  +  ++ D KK+ E +  IHE+ +  I
Sbjct: 1284 AFNRAPSTTTGKSPFEVVYGVNPMMPTDLAPIKRNT-IDYDAKKRVEQMLHIHEQVKKQI 1342

Query: 4352 E*RTEQYAKQANKGRHKIV-----FEAEDWVWLHMRKERFPAQRRSKLLPRGDGPFQVLE 4516
            E      A +A+KG+ K V     FE  D VW+H+RKERFP +R++KL+PR DGPF+VLE
Sbjct: 1343 E-----KANEAHKGKSKGVKGTKSFEPGDLVWIHLRKERFPEKRKNKLMPRADGPFEVLE 1397

Query: 4517 HINDNAYKLDLPGEYNVSATFNVSDLSPF------DVGDDWRTNPFQE---EGNDANHGT 4669
                NAYK++LPGEY V  TFNV DLSP+      D  +D R NPFQE   E N    G 
Sbjct: 1398 KFGSNAYKINLPGEYGVHGTFNVGDLSPYYEEIEEDKLEDLRANPFQEGEIETNQTEKGH 1457

Query: 4670 VT 4675
            ++
Sbjct: 1458 IS 1459



 Score =  100 bits (249), Expect(5) = 0.0
 Identities = 43/83 (51%), Positives = 63/83 (75%)
 Frame = +3

Query: 3921 FVREIVRLHGMPRTIVPDRDAKFLSYFWKTLWCKLGTKLLFSTTCHPQTDGQMEVVNRTL 4100
            + +E+V+LHG+P++IV DRD+KF+S+FW+TLW  L T+LLFST+ HPQTDGQ EV N+TL
Sbjct: 1200 YFKEVVKLHGIPKSIVSDRDSKFMSHFWRTLWKLLKTRLLFSTSHHPQTDGQTEVTNKTL 1259

Query: 4101 STLLWAIIKKNIKTWEECLPHVE 4169
              +L   + +++K W+  L   E
Sbjct: 1260 GRILRCTVARSLKDWDLKLAQAE 1282



 Score = 85.5 bits (210), Expect(5) = 0.0
 Identities = 41/88 (46%), Positives = 61/88 (69%)
 Frame = +3

Query: 1935 SEIKRAMFSNQPMIVLLYKEAYFNANQLNASLPSSVVSLLQDFDDIFPKEIPNGLPPIRG 2114
            +E+ + +  ++ +  L+ K+  F  N    SLP  V  LLQ ++D+FP E+P+GLPP+RG
Sbjct: 535  AEMLQELKGDEDVYALIAKDVVFGQN---VSLPKEVQELLQSYEDVFPNELPSGLPPLRG 591

Query: 2115 IEHQIDFVLGATIPN*PA*RSNPE*TKE 2198
            IEHQIDF+ GAT+PN  A RS+P+ T+E
Sbjct: 592  IEHQIDFIPGATLPNKAAYRSDPKATQE 619



 Score =  110 bits (276), Expect = 5e-21
 Identities = 54/182 (29%), Positives = 104/182 (57%), Gaps = 1/182 (0%)
 Frame = +3

Query: 483  IKMKIPLFQGKNDPEAYLEWEKKVELVFDCHNYSENKKVKLAAIEFSDYAFVW*DQLVLN 662
            +K++IP F G  +PE  L+W + +E VF+   YS+ K  K+A ++   YA +W + L   
Sbjct: 88   LKVEIPDFHGSLNPEDLLDWFRTIERVFEFKGYSDGKAFKVAILKLKGYASLWYENLKNQ 147

Query: 663  RRRNRERPIETWEEMKTVMRKRFVPSYYYRELYNKLQSLKQGNRSXXXXXXXXXXXXIRA 842
            RRR+ + PI++W ++K  + ++F+P  Y ++++ KL  LKQ  +             ++ 
Sbjct: 148  RRRDGKEPIKSWLKLKKKLNEKFIPKEYTQDIFIKLTQLKQDQQPLESYLRDFEQLTLQC 207

Query: 843  NVEEDREATMSRFLVGLNREIANAVELQHYVELEDMVHMAIKIENQLKRRGSTC-PSQNP 1019
             + E  E  ++RF+ GL+ +IA+ V +Q     ++ V++A+++E   K + +T  P+  P
Sbjct: 208  ELNEKPEQKIARFVEGLDTKIAHRVRMQQVWSFDEAVNLALRVEKMGKGKATTTKPTTKP 267

Query: 1020 ST 1025
            +T
Sbjct: 268  AT 269


>gb|ABF97027.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 889

 Score =  828 bits (2138), Expect(3) = 0.0
 Identities = 397/605 (65%), Positives = 484/605 (80%), Gaps = 4/605 (0%)
 Frame = +1

Query: 2131 ISCSVP---PFQTDQLKGVTPSRQRKVIELMEKGYVRENMSPCAVLVILVPKKDRLWRMC 2301
            +S S+P   P++T+  +  T   QR+V EL++KGYVRE++SPC+V V+LVPKKD  WRMC
Sbjct: 55   VSASLPNRAPYRTNPEE--TKEIQRQVQELLDKGYVRESLSPCSVPVLLVPKKDGSWRMC 112

Query: 2302 VDCRAINNIMVKYRHPIPRLDDMLDELHGSCVFSKIDLKSEYHRIRMKEGDEWKTKFKTK 2481
            VDCRAINNI ++YRHPIPRLDDMLDEL GS VF KIDL+S YH+IRMK GDEWKT FKTK
Sbjct: 113  VDCRAINNITIRYRHPIPRLDDMLDELSGSLVFCKIDLRSGYHQIRMKLGDEWKTAFKTK 172

Query: 2482 YGLYE*LVMPFGLINATSTFMRLMNHVLRAFIENFVVIYFDDILIYSQNLDDHLMHLKLV 2661
            +GLYE LVMPFGL NA STFMRLMN VLRAFI  FVV+YFDDILIYS++++DH  HL+ V
Sbjct: 173  FGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGRFVVVYFDDILIYSRSIEDHHGHLRAV 232

Query: 2662 LDVLRKEKLFANLKKCTFCTNKHVFLGFVTSTQGIQVDEEKIHAIQEWPSPTSVSNV*SF 2841
             D LR  +LF NL+KCTFCT++  FLG+V + QGI+VD+ K+ AI  WP PT+++ V SF
Sbjct: 233  FDALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIHSWPVPTTITQVRSF 292

Query: 2842 HGLASFYRRFVKDFNSIAAPITKVIKKNAGFKWGEEQEKAFQLIKQKLTHAPLHALPNFA 3021
             GLA FYR FVKDF++IAAP+ ++ K+N  F W   Q  AF  +K KLTHAPL  LP+F 
Sbjct: 293  LGLAGFYRHFVKDFSTIAAPLHELTKRNVTFTWAAAQRNAFDTLKDKLTHAPLLQLPDFN 352

Query: 3022 KAFEIDCDALGLGIGVVLIQEGRPLAYFSEKLSGAALNYPTYDKEMYALVRSLETWQYYL 3201
            K FE++CDA G+G+G VL+QEG+P+AYFSEKLSG +LNY TYDKE++ALVR+LETWQ+YL
Sbjct: 353  KTFELECDASGIGLGGVLLQEGKPVAYFSEKLSGPSLNYSTYDKELFALVRTLETWQHYL 412

Query: 3202 WPKEFVIHIDHESLKHLRGQHKLNKGRARWVEFFETFPYVIQYKQGKENIVADALSRRYI 3381
            WPKEFVIH DHESLKH+R Q KLN+  A+WVEF E+FPYVI++K+GKEN++ADALSRRY 
Sbjct: 413  WPKEFVIHSDHESLKHIRSQAKLNRRHAKWVEFIESFPYVIKHKKGKENVIADALSRRYA 472

Query: 3382 LISTLDAKILGFEHIKELYPLDHDFNEEYESC-EETTNGKYFRHEGFLFRENKLCIPNCS 3558
            ++S LD KI G E IKE Y  D DF +   +C E  T  K+    GF+FR NKLCIP  S
Sbjct: 473  MLSQLDFKIFGLETIKEQYAHDDDFKDVLLNCMEGRTWNKFVLTNGFVFRANKLCIPASS 532

Query: 3559 VRDLLVRESHGGGLMGHFGVAKTLAILQEHFYWPHMKRDVERICGRCVTCRQAKSRVPPH 3738
            VR LL++E+HGGGLMGHFGV KT  IL +HF+WP M+RDVER   RC TC++AKSR+ PH
Sbjct: 533  VRMLLLQEAHGGGLMGHFGVKKTEDILADHFFWPKMRRDVERFVARCTTCQKAKSRLNPH 592

Query: 3739 GLYTPLPIPSTPWIDISMDFMLGLPRSKRGRDSVFVVVDRFSKMAHFIPCHNMNDASHVA 3918
            GLY PLP+PS PW DISMDF+LGLPR+K+GRDS+FVVVDRFSKMAHFIPCH  +DA+HVA
Sbjct: 593  GLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDATHVA 652

Query: 3919 DLLGR 3933
            DL  R
Sbjct: 653  DLFFR 657



 Score =  152 bits (384), Expect(3) = 0.0
 Identities = 74/135 (54%), Positives = 93/135 (68%)
 Frame = +2

Query: 4172 AYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSERVNLDGKKKAEFVKQIHEKARLNI 4351
            AYN + HS TK  PFEIVY   P  P+DL PLP SERVN D K +AE + ++HE  + NI
Sbjct: 739  AYNHSQHSTTKKCPFEIVYGLLPRAPIDLLPLPTSERVNFDAKHRAELMLKLHETTKENI 798

Query: 4352 E*RTEQYAKQANKGRHKIVFEAEDWVWLHMRKERFPAQRRSKLLPRGDGPFQVLEHINDN 4531
            E    +Y    +KG+  + FE  D VWLH+RK+RFP  R+SKL PR DGPF+VL+ INDN
Sbjct: 799  ERMNIKYKLAGSKGKKHVAFEPGDLVWLHLRKDRFPNLRKSKLQPRADGPFKVLQKINDN 858

Query: 4532 AYKLDLPGEYNVSAT 4576
            AYKL+LP ++ VS T
Sbjct: 859  AYKLELPADFGVSPT 873



 Score =  151 bits (382), Expect(3) = 0.0
 Identities = 69/83 (83%), Positives = 75/83 (90%)
 Frame = +3

Query: 3921 FVREIVRLHGMPRTIVPDRDAKFLSYFWKTLWCKLGTKLLFSTTCHPQTDGQMEVVNRTL 4100
            F REIVRLHG+P TIV DRD KFLS+FW+TLW KLGTKLLFSTTCHPQTDGQ EVVNRTL
Sbjct: 655  FFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRTL 714

Query: 4101 STLLWAIIKKNIKTWEECLPHVE 4169
            ST+L A++KKNIK WEECLPHVE
Sbjct: 715  STMLRAVLKKNIKMWEECLPHVE 737


>emb|CAN74973.1| hypothetical protein VITISV_001042 [Vitis vinifera]
          Length = 1281

 Score =  704 bits (1817), Expect(4) = 0.0
 Identities = 353/585 (60%), Positives = 418/585 (71%)
 Frame = +1

Query: 2179 TPSRQRKVIELMEKGYVRENMSPCAVLVILVPKKDRLWRMCVDCRAINNIMVKYRHPIPR 2358
            T   QR+V  L+ KG+VRE++SPC V V LV KKD  WRMCVD R INNI VKYRHPIPR
Sbjct: 517  TKELQRQVEXLLTKGHVRESLSPCVVXVXLVXKKDGTWRMCVDXRXINNITVKYRHPIPR 576

Query: 2359 LDDMLDELHGSCVFSKIDLKSEYHRIRMKEGDEWKTKFKTKYGLYE*LVMPFGLINATST 2538
            LDDMLDELHGSCVF+KIDLKS YH+IRMKEGDEWKT FKTKYGLYE LVMPFGL NA ST
Sbjct: 577  LDDMLDELHGSCVFTKIDLKSGYHQIRMKEGDEWKTAFKTKYGLYEWLVMPFGLTNAPST 636

Query: 2539 FMRLMNHVLRAFIENFVVIYFDDILIYSQNLDDHLMHLKLVLDVLRKEKLFANLKKCTFC 2718
            FMRLMNH LR+FI  FVV+YFDDIL+YS+NLD+++ HL                     C
Sbjct: 637  FMRLMNHALRSFISRFVVVYFDDILVYSKNLDEYINHLH--------------------C 676

Query: 2719 TNKHVFLGFVTSTQGIQVDEEKIHAIQEWPSPTSVSNV*SFHGLASFYRRFVKDFNSIAA 2898
                 FL  +   + ++           W                SFYR FVKDF+++A 
Sbjct: 677  VLALCFLVMLLVXKELR-----------WMRK-------------SFYRXFVKDFSTLAV 712

Query: 2899 PITKVIKKNAGFKWGEEQEKAFQLIKQKLTHAPLHALPNFAKAFEIDCDALGLGIGVVLI 3078
            P+T+++KK  GFKWG   ++AF  IK+ L                        GI  +L+
Sbjct: 713  PLTEIVKKFVGFKWGSXXDRAFIXIKEMLC-----------------------GIRAILM 749

Query: 3079 QEGRPLAYFSEKLSGAALNYPTYDKEMYALVRSLETWQYYLWPKEFVIHIDHESLKHLRG 3258
            QE RP+ YFSEKL+G  LNYPTYDKE+YALVR+LETWQ+YLWPKEFVIH DHESLKHL+G
Sbjct: 750  QEKRPITYFSEKLNGTTLNYPTYDKELYALVRALETWQHYLWPKEFVIHTDHESLKHLKG 809

Query: 3259 QHKLNKGRARWVEFFETFPYVIQYKQGKENIVADALSRRYILISTLDAKILGFEHIKELY 3438
            Q KLN+  A+WVEF ETF YVI+YKQGKENIVADALSRRY L+STL+AK+LGFE++KELY
Sbjct: 810  QGKLNRRHAKWVEFIETFLYVIKYKQGKENIVADALSRRYALVSTLNAKLLGFEYVKELY 869

Query: 3439 PLDHDFNEEYESCEETTNGKYFRHEGFLFRENKLCIPNCSVRDLLVRESHGGGLMGHFGV 3618
              D DF   Y +CE+TT             EN+LC+PN S+R+LLVRE+HGGGLMGHFGV
Sbjct: 870  ANDDDFASVYGACEKTT------------FENRLCVPNSSMRELLVREAHGGGLMGHFGV 917

Query: 3619 AKTLAILQEHFYWPHMKRDVERICGRCVTCRQAKSRVPPHGLYTPLPIPSTPWIDISMDF 3798
             KTL +L EHF+WP MK DVER C RC+TCRQAKSRV PHGLYTPLP+PS PW+DISMDF
Sbjct: 918  RKTLDVLHEHFFWPKMKCDVERACARCITCRQAKSRVLPHGLYTPLPVPSAPWVDISMDF 977

Query: 3799 MLGLPRSKRGRDSVFVVVDRFSKMAHFIPCHNMNDASHVADLLGR 3933
            +LGLPRS+ GR S+FVVVDRFSKM +FI CH ++DA+H+A+L  R
Sbjct: 978  VLGLPRSRNGRXSIFVVVDRFSKMTYFISCHKIDDATHIANLFFR 1022



 Score =  257 bits (657), Expect(4) = 0.0
 Identities = 121/196 (61%), Positives = 150/196 (76%), Gaps = 11/196 (5%)
 Frame = +2

Query: 4187 IHSATKFLPFEIVYCFNPLTPLDLSPLPMSERVNLDGKKKAEFVKQIHEKARLNIE*RTE 4366
            +HS T F PFEIVY FNPLT LDL PL ++E  +LDG+KK E VK++HE  R +IE + E
Sbjct: 1083 VHSTTNFSPFEIVYGFNPLTSLDLLPLXVNEMXSLDGEKKVEMVKKLHESVRKHIEKKNE 1142

Query: 4367 QYAKQANKGRHKIVFEAEDWVWLHMRKERFPAQRRSKLLPRGDGPFQVLEHINDNAYKLD 4546
            QY  +ANKG  +++FE  DWVW+HMRKERFP +R SKL PRGDGPFQVLE INDNAYKLD
Sbjct: 1143 QYVSKANKGXXQVLFEPGDWVWVHMRKERFPTRRXSKLHPRGDGPFQVLERINDNAYKLD 1202

Query: 4547 LPGEYNVSATFNVSDLSPFDVGDDWRTNPFQEEGNDANH-----------GTVTRTQANK 4693
            +PGEYN+SATFNVSDLSPFDVGDD  TNPF+E+GND N            G +T+ ++ K
Sbjct: 1203 IPGEYNISATFNVSDLSPFDVGDDSXTNPFEEKGNDENQQAFKDPLHVLVGPITKARSKK 1262

Query: 4694 FKDALSGLIQKVWNQT 4741
             K+AL+GLIQ++W ++
Sbjct: 1263 IKEALNGLIQEIWTKS 1278



 Score =  116 bits (290), Expect(4) = 0.0
 Identities = 54/64 (84%), Positives = 57/64 (89%)
 Frame = +3

Query: 3921 FVREIVRLHGMPRTIVPDRDAKFLSYFWKTLWCKLGTKLLFSTTCHPQTDGQMEVVNRTL 4100
            F REIVRLHG+PR+IV DRD KFLSYFWK LW KLGTKLLFSTTCHPQTDGQ EVVNRTL
Sbjct: 1020 FFREIVRLHGVPRSIVSDRDVKFLSYFWKVLWRKLGTKLLFSTTCHPQTDGQTEVVNRTL 1079

Query: 4101 STLL 4112
            ST +
Sbjct: 1080 STFV 1083



 Score = 72.4 bits (176), Expect(4) = 0.0
 Identities = 34/60 (56%), Positives = 46/60 (76%)
 Frame = +3

Query: 2019 NASLPSSVVSLLQDFDDIFPKEIPNGLPPIRGIEHQIDFVLGATIPN*PA*RSNPE*TKE 2198
            N ++   +++  Q+++D+FP ++P+GLPPIRGIE QIDFV  ATIPN  A RSNPE TKE
Sbjct: 460  NKTITLVLLTPRQEYEDVFPNDVPSGLPPIRGIEXQIDFVSXATIPNRXAYRSNPEETKE 519



 Score =  255 bits (652), Expect(2) = e-101
 Identities = 138/237 (58%), Positives = 162/237 (68%), Gaps = 1/237 (0%)
 Frame = +3

Query: 399  EGEDSTGSPRKFGRVRGARNREDNNLSSIKMKIPLFQGKNDPEAYLEWEKKVELVFDCHN 578
            E E+   S    GR    ++  D NL +IKMKIPLFQGKNDP+ YLEWEKKVE +F+CHN
Sbjct: 83   EDEEDQASLNHXGRAPRWQBGIDRNLGNIKMKIPLFQGKNDPKVYLEWEKKVEFIFECHN 142

Query: 579  YSENKKVKLAAIEFSDYAFVW*DQLVLNRRRNRERPIETWEEMKTVMRKRFVPSYYYREL 758
            YSE K VKL  IEF+DYA +W DQLV+NRRRN ERPIETWEEMK  MR+ FVPS+YYR+L
Sbjct: 143  YSEEKNVKLVVIEFTDYAIIWWDQLVMNRRRNYERPIETWEEMKATMRRWFVPSHYYRDL 202

Query: 759  YNKLQSLKQGNRSXXXXXXXXXXXXIRANVEEDREATMSRFLVGLNREIANAVELQHYVE 938
            Y KL SL  G RS            IRANVEEDREATM+RFL GLN++IAN VELQHYVE
Sbjct: 203  YQKLXSLTXGYRSMDDYHKEMEIAMIRANVEEDREATMARFLNGLNQDIANVVELQHYVE 262

Query: 939  LEDMVHMAIKIENQLKRRGSTCPSQNPSTSA-WKSNHWKKDEKQLMMKPKTE*KKKQ 1106
            LEDM               +T   QNPS+SA W+ N  +KDE  ++ K KTE  K++
Sbjct: 263  LEDM--------------ETTRSFQNPSSSASWRPNR-RKDE-GVVFKSKTEPPKRR 303



 Score =  145 bits (365), Expect(2) = e-101
 Identities = 94/233 (40%), Positives = 121/233 (51%), Gaps = 1/233 (0%)
 Frame = +2

Query: 1094 KKEATSHGNQGKSDSSTSRNHDIKCFKCQGRGHIASQCPNKRVMVLRXXXXXXXXXXXXX 1273
            +++   + N+GK++S T RN DIKCF+C G GHIASQCPNK  M++R             
Sbjct: 302  RRDEAPNVNKGKNESQT-RNRDIKCFRCLGVGHIASQCPNKMTMIVRVDEEMETESKEDD 360

Query: 1274 XFMPPLEDANDKEYAAQGGDLLVARRALSVQAKEDGEVQLENI-FHTRCHVQNKVCSVII 1450
              MP LEDA D                      ++ E  L+ + ++ +  +       I+
Sbjct: 361  DQMPSLEDACD----------------------DNVEYPLKRMTWNNKWRI-----FFIL 393

Query: 1451 DGGSCTNVASTIMVEKLGLQTTKHPRPYKLQWLNDSGEVKVNKQVLVSFCIGKYEDEVLC 1630
            D    T+  ST +VEKL L T KHPRPYKLQWLND GEVKVNKQVLV F IG        
Sbjct: 394  DA---TSTISTTLVEKLNLPTLKHPRPYKLQWLNDCGEVKVNKQVLVYFSIG-------- 442

Query: 1631 DVVPMQAGHLLLGRPWQFDRRVKHDGSTNKYSFVLNQRTITLVPLTPKQVHED 1789
                               R+V HDG  N+YSFV + +TITLV LTP+Q +ED
Sbjct: 443  -------------------RKVNHDGFKNRYSFVKDNKTITLVLLTPRQEYED 476


>emb|CAN80356.1| hypothetical protein VITISV_003506 [Vitis vinifera]
          Length = 960

 Score =  837 bits (2161), Expect(3) = 0.0
 Identities = 398/585 (68%), Positives = 478/585 (81%)
 Frame = +1

Query: 2179 TPSRQRKVIELMEKGYVRENMSPCAVLVILVPKKDRLWRMCVDCRAINNIMVKYRHPIPR 2358
            T   QR+V EL+ KG+VRE+M PCA+LV+LVPKKD  WRMCVDCRAINNI VKYRHPIPR
Sbjct: 211  TKELQRQVEELLTKGHVRESMRPCAILVLLVPKKDGTWRMCVDCRAINNITVKYRHPIPR 270

Query: 2359 LDDMLDELHGSCVFSKIDLKSEYHRIRMKEGDEWKTKFKTKYGLYE*LVMPFGLINATST 2538
            LDDMLDELHGSCVF KIDLKS YH+IRMKEGDEWKT FKTKYGLYE LVMPFGL NA ST
Sbjct: 271  LDDMLDELHGSCVFIKIDLKSGYHQIRMKEGDEWKTAFKTKYGLYEWLVMPFGLTNALST 330

Query: 2539 FMRLMNHVLRAFIENFVVIYFDDILIYSQNLDDHLMHLKLVLDVLRKEKLFANLKKCTFC 2718
            FMRLMNHVLRAFI  FVV+YFDDIL+YS+NLD+H+ HL  VL +LRKEKL+ANLKKC+FC
Sbjct: 331  FMRLMNHVLRAFIGRFVVVYFDDILVYSKNLDEHINHLHCVLAILRKEKLYANLKKCSFC 390

Query: 2719 TNKHVFLGFVTSTQGIQVDEEKIHAIQEWPSPTSVSNV*SFHGLASFYRRFVKDFNSIAA 2898
             +K VFLG+V S +GI+VDEEK+ AI+EWP+P S++ V SFHGLASFY RFVKDF+++AA
Sbjct: 391  MDKVVFLGYVVSAKGIEVDEEKLKAIKEWPTPKSITEVRSFHGLASFYFRFVKDFSTLAA 450

Query: 2899 PITKVIKKNAGFKWGEEQEKAFQLIKQKLTHAPLHALPNFAKAFEIDCDALGLGIGVVLI 3078
            P+T+++KK+ GFKWG EQ++AF  IK++L  APL +LPNF+K FEI+CDA G+GI  VL+
Sbjct: 451  PLTEIVKKSVGFKWGSEQDRAFIEIKERLCGAPLLSLPNFSKTFEIECDASGIGIATVLM 510

Query: 3079 QEGRPLAYFSEKLSGAALNYPTYDKEMYALVRSLETWQYYLWPKEFVIHIDHESLKHLRG 3258
            QE RP+AYFSEKL+GA LNYPTYDKE+YAL                          HL+G
Sbjct: 511  QEKRPIAYFSEKLNGATLNYPTYDKELYAL--------------------------HLKG 544

Query: 3259 QHKLNKGRARWVEFFETFPYVIQYKQGKENIVADALSRRYILISTLDAKILGFEHIKELY 3438
            Q KLN+  A+WVEF ETFPYV++YKQGKENIV +ALSRRY L+STL+AK+LGFE++KELY
Sbjct: 545  QDKLNRRHAKWVEFIETFPYVVKYKQGKENIVVNALSRRYALVSTLNAKLLGFEYVKELY 604

Query: 3439 PLDHDFNEEYESCEETTNGKYFRHEGFLFRENKLCIPNCSVRDLLVRESHGGGLMGHFGV 3618
              D+DF   Y +CE+   GK++R +G+LFREN+LC+PN S+ +LLV E+HGGGLMGHFGV
Sbjct: 605  ANDNDFASLYGACEKAAFGKFYRLDGYLFRENRLCVPNSSMCELLVHEAHGGGLMGHFGV 664

Query: 3619 AKTLAILQEHFYWPHMKRDVERICGRCVTCRQAKSRVPPHGLYTPLPIPSTPWIDISMDF 3798
             +TL +L EHF+WP MKRDVER C RC+T RQAKSRV PH LYTPL + S  W+DISMDF
Sbjct: 665  RRTLDVLYEHFFWPKMKRDVERACARCITYRQAKSRVLPHRLYTPLLVSSASWVDISMDF 724

Query: 3799 MLGLPRSKRGRDSVFVVVDRFSKMAHFIPCHNMNDASHVADLLGR 3933
            +LGLPRS+ GRDS+FVVVDRFSKMAHFI CH  +DA+H+A+L  R
Sbjct: 725  VLGLPRSRNGRDSIFVVVDRFSKMAHFISCHKADDATHIANLFFR 769



 Score = 97.4 bits (241), Expect(3) = 0.0
 Identities = 44/62 (70%), Positives = 50/62 (80%)
 Frame = +3

Query: 3921 FVREIVRLHGMPRTIVPDRDAKFLSYFWKTLWCKLGTKLLFSTTCHPQTDGQMEVVNRTL 4100
            F REIVRLHG+PR+IV D+D KFLSYFWK  W KLGTKLLFSTTC PQTDGQ ++ N   
Sbjct: 767  FFREIVRLHGVPRSIVSDQDVKFLSYFWKVFWRKLGTKLLFSTTCPPQTDGQTKIKNEQY 826

Query: 4101 ST 4106
            +T
Sbjct: 827  AT 828



 Score = 72.0 bits (175), Expect(3) = 0.0
 Identities = 33/49 (67%), Positives = 42/49 (85%)
 Frame = +3

Query: 2052 LQDFDDIFPKEIPNGLPPIRGIEHQIDFVLGATIPN*PA*RSNPE*TKE 2198
            +++++D+FP ++P+GLPPIRGIEHQIDFV GATIPN  A RSN E TKE
Sbjct: 165  VKEYEDVFPNDVPSGLPPIRGIEHQIDFVPGATIPNRLAYRSNLEETKE 213



 Score =  145 bits (366), Expect = 2e-31
 Identities = 83/142 (58%), Positives = 92/142 (64%), Gaps = 8/142 (5%)
 Frame = +2

Query: 1184 RGHIASQCPNKRVMVLRXXXXXXXXXXXXXXFMPPLEDANDK--EYAAQGGDLLVARRAL 1357
            +G IASQCPNKR M+ R               M  LEDA D   EY  +G + LVARR L
Sbjct: 31   KGRIASQCPNKRTMITRVDGEVETESEEDDDQMASLEDACDDNVEYPMEG-ESLVARRXL 89

Query: 1358 SVQAKEDG-EVQLENIFHTRCHVQNKVCSVIIDGG-----SCTNVASTIMVEKLGLQTTK 1519
            S Q KED  E Q ENIFHTRCH+ NKVCS+IIDGG     SCTNVAST +VE L L T K
Sbjct: 90   SAQVKEDDMEQQRENIFHTRCHINNKVCSMIIDGGVGEGRSCTNVASTTLVEILNLPTLK 149

Query: 1520 HPRPYKLQWLNDSGEVKVNKQV 1585
            HP+PYKLQWLND GEVK  + V
Sbjct: 150  HPKPYKLQWLNDCGEVKEYEDV 171



 Score =  142 bits (357), Expect = 2e-30
 Identities = 72/136 (52%), Positives = 86/136 (63%), Gaps = 11/136 (8%)
 Frame = +2

Query: 4358 RTEQYAKQANKGRHKIVFEAEDWVWLHMRKERFPAQRRSKLLPRGDGPFQVLEHINDNAY 4537
            + EQYA +ANKGR +++FE  DWVW+HMRKERFP  RR KL PRGDGPFQVLE INDNAY
Sbjct: 822  KNEQYATKANKGRRQVLFEPGDWVWVHMRKERFPICRRFKLHPRGDGPFQVLERINDNAY 881

Query: 4538 KLDLPGEYNVSATFNVSDLSPFDVGDDWRTNPFQEEGNDANH-----------GTVTRTQ 4684
            KLDLP                   GDD RTNP +E GND N            G +T+ +
Sbjct: 882  KLDLP-------------------GDDSRTNPLEERGNDENQQAFKDPLHVLVGPITKAR 922

Query: 4685 ANKFKDALSGLIQKVW 4732
            + K K+AL+GLIQ +W
Sbjct: 923  SKKIKEALNGLIQDIW 938


>gb|ADP20178.1| gag-pol polyprotein [Silene latifolia]
          Length = 1518

 Score =  712 bits (1838), Expect(3) = 0.0
 Identities = 342/596 (57%), Positives = 446/596 (74%), Gaps = 3/596 (0%)
 Frame = +1

Query: 2146 PPFQTDQLKGVTPSRQRKVIELMEKGYVRENMSPCAVLVILVPKKDRLWRMCVDCRAINN 2325
            P ++ D     T   Q ++ ELM KG+VRE++SPCAV  +LVPKKD  WRMC D RAINN
Sbjct: 620  PAYRCDP--NATKELQHQIEELMAKGFVRESLSPCAVPALLVPKKDGTWRMCTDSRAINN 677

Query: 2326 IMVKYRHPIPRLDDMLDELHGSCVFSKIDLKSEYHRIRMKEGDEWKTKFKTKYGLYE*LV 2505
            I VKYR PIPRLDDMLDEL G+ +FSKIDL+  YH++R++EGDEWKT FKTK+GLYE LV
Sbjct: 678  ITVKYRFPIPRLDDMLDELSGASIFSKIDLRQGYHQVRIREGDEWKTAFKTKHGLYEWLV 737

Query: 2506 MPFGLINATSTFMRLMNHVLRAFIENFVVIYFDDILIYSQNLDDHLMHLKLVLDVLRKEK 2685
            MPFGL NA STFMRLM  VLR  +  F V+YFDDIL+YS+   +HL HL++V  +LR++K
Sbjct: 738  MPFGLSNAPSTFMRLMTEVLRPCLGKFAVVYFDDILVYSKTKGEHLKHLEVVFKILREQK 797

Query: 2686 LFANLKKCTFCTNKHVFLGFVTSTQGIQVDEEKIHAIQEWPSPTSVSNV*SFHGLASFYR 2865
            L+  L+KCTF   +  FLG++ S +GI VD+E I A+Q WP+PT+V+ V SFHGLASFYR
Sbjct: 798  LYGKLEKCTFMVEEVAFLGYLISGRGISVDQENIAAMQSWPTPTTVTEVRSFHGLASFYR 857

Query: 2866 RFVKDFNSIAAPITKVIKKNAGFKWGEEQEKAFQLIKQKLTHAPLHALPNFAKAFEIDCD 3045
            RF+K+F+++ APIT+ ++K   F+W E+ +++F+ IKQ + + P+  LP+F + FE++CD
Sbjct: 858  RFIKNFSTVVAPITECMRKGE-FQWTEQAQQSFEKIKQLMCNTPILKLPDFDQLFEVECD 916

Query: 3046 ALGLGIGVVLIQEGRPLAYFSEKLSGAALNYPTYDKEMYALVRSLETWQYYLWPKEFVIH 3225
            A G+GIG VLIQ  +P+AYFSEKL+GA L Y TYDKE YA++R+L  W +YL PK FV+H
Sbjct: 917  ASGVGIGAVLIQSQKPVAYFSEKLNGAKLKYSTYDKEFYAIIRALMHWNHYLKPKPFVLH 976

Query: 3226 IDHESLKHLRGQHKLNKGRARWVEFFETFPYVIQYKQGKENIVADALSRRYILISTLDAK 3405
             DHE+LK++ GQHKLN   A+WVEF ++F +  +YK+GK+N+VADALSRR+ L+S +  +
Sbjct: 977  SDHEALKYINGQHKLNFRHAKWVEFLQSFTFSSKYKEGKKNVVADALSRRHSLLSVMSNR 1036

Query: 3406 ILGFEHIKELYPLDHDFNEEYESCEE---TTNGKYFRHEGFLFRENKLCIPNCSVRDLLV 3576
            +LGFE +KELY  D DF+EE+ +  E       KY   EGFLF+ NKLC+P  S RDLL+
Sbjct: 1037 VLGFEFMKELYKEDPDFSEEWITQTEGHKNQGSKYLLQEGFLFQGNKLCVPRGSYRDLLI 1096

Query: 3577 RESHGGGLMGHFGVAKTLAILQEHFYWPHMKRDVERICGRCVTCRQAKSRVPPHGLYTPL 3756
            RE H GG+ GHFGV KTL ILQ+ FYWP M  DV+ I  RC  C+ +KS   P G YTPL
Sbjct: 1097 REVHSGGMGGHFGVQKTLEILQDQFYWPRMMGDVQIILRRCSKCQLSKSSFQP-GPYTPL 1155

Query: 3757 PIPSTPWIDISMDFMLGLPRSKRGRDSVFVVVDRFSKMAHFIPCHNMNDASHVADL 3924
            P+PS PW D+SMDF++ LPR++RG+DSV VVVDRFSKMAHF+ C    DA  VA+L
Sbjct: 1156 PVPSKPWEDLSMDFIVALPRTQRGKDSVMVVVDRFSKMAHFVACKKTEDAVSVAEL 1211



 Score =  162 bits (411), Expect(3) = 0.0
 Identities = 86/168 (51%), Positives = 111/168 (66%), Gaps = 6/168 (3%)
 Frame = +2

Query: 4172 AYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSERVNLDGKKKAEFVKQIHEKARLNI 4351
            A+N    +AT   PFE+VY  NPL PLDLS +P  E +NLD  K+AE + ++HE  +  I
Sbjct: 1296 AFNRAPSTATGHSPFEVVYGVNPLMPLDLSSVP-KENINLDAMKRAEQLLKLHETVKRQI 1354

Query: 4352 E*RTEQYAKQANKGRHKIVFEAEDWVWLHMRKERFPAQRRSKLLPRGDGPFQVLEHINDN 4531
            E   EQY K     + K  FE  D VW+H+RKERFPA+R++KL+PR DGPF+V+E I  +
Sbjct: 1355 ERTNEQYQKHLKVPKGKKEFEPGDLVWIHLRKERFPAKRKNKLMPRSDGPFEVVEKIGPS 1414

Query: 4532 AYKLDLPGEYNVSATFNVSDLSPF--DVGDD----WRTNPFQEEGNDA 4657
            AYK+DLPG+Y V  TFNV DLSP+  D GD+     RT+P Q  G DA
Sbjct: 1415 AYKIDLPGDYGVHGTFNVGDLSPYYEDSGDEEVTGLRTSPVQPGGVDA 1462



 Score =  110 bits (276), Expect(3) = 0.0
 Identities = 49/76 (64%), Positives = 61/76 (80%)
 Frame = +3

Query: 3921 FVREIVRLHGMPRTIVPDRDAKFLSYFWKTLWCKLGTKLLFSTTCHPQTDGQMEVVNRTL 4100
            F++EIVRLHG+P+TIV DRD KF+ YFWKTLW  L TKLLFST+ HPQTDGQ EV NRTL
Sbjct: 1212 FLKEIVRLHGVPKTIVSDRDTKFMGYFWKTLWKLLKTKLLFSTSHHPQTDGQTEVTNRTL 1271

Query: 4101 STLLWAIIKKNIKTWE 4148
              +L  ++ K++K W+
Sbjct: 1272 GRILRCLVSKSLKDWD 1287



 Score =  174 bits (441), Expect(2) = 6e-66
 Identities = 100/219 (45%), Positives = 126/219 (57%), Gaps = 13/219 (5%)
 Frame = +2

Query: 1160 IKCFKCQGRGHIASQCPNKRVMVLRXXXXXXXXXXXXXXFMPPL---EDANDKEYAAQ-- 1324
            IKCF+CQG GH    CP+ R +                     L   E  ++KE +    
Sbjct: 309  IKCFQCQGFGHFRKDCPSARTLTAIEVAEWEREGLVEYEEDEALVLEEVESEKETSPDQI 368

Query: 1325 ------GGDLLVARRALSVQAKEDGEVQLENIFHTRCHVQNKVCSVIIDGGSCTNVASTI 1486
                  G  L + R   S QA  + + Q   IF +RC VQ +VC++II+GGSCTNVAST 
Sbjct: 369  VAHPDTGHSLFLWRVMHSQQAPLEAD-QRSMIFRSRCTVQGRVCNLIINGGSCTNVASTT 427

Query: 1487 MVEKLGLQTTKHPRPYKLQWLNDSGEVKVNKQVLVSFCIGK-YEDEVLCD-VVPMQAGHL 1660
            MV KLGL T +HP PYKL+WL+    V+V+KQ ++SF IGK Y+DEVLCD VVPM A HL
Sbjct: 428  MVSKLGLPTQEHPNPYKLRWLSKDSGVRVDKQCIISFSIGKMYKDEVLCDVVVPMDACHL 487

Query: 1661 LLGRPWQFDRRVKHDGSTNKYSFVLNQRTITLVPLTPKQ 1777
            LLGRPW++DR   H G  N Y F    + +TL PL P Q
Sbjct: 488  LLGRPWEYDRNTTHQGKDNVYIFKHQGKKVTLTPLPPNQ 526



 Score =  107 bits (268), Expect(2) = 6e-66
 Identities = 61/217 (28%), Positives = 110/217 (50%)
 Frame = +3

Query: 483  IKMKIPLFQGKNDPEAYLEWEKKVELVFDCHNYSENKKVKLAAIEFSDYAFVW*DQLVLN 662
            IK++IP F G  +P+  LEW + VE +F+  NY++ K  K+A ++   YA +W D L   
Sbjct: 90   IKVEIPEFSGSLNPDDLLEWIRDVEKIFEYKNYNDVKACKVAVLKLKGYASLWYDNLKHQ 149

Query: 663  RRRNRERPIETWEEMKTVMRKRFVPSYYYRELYNKLQSLKQGNRSXXXXXXXXXXXXIRA 842
            R +  + P+ +W ++K  M  +FV   Y ++L+ KL +LKQ  ++            ++ 
Sbjct: 150  RLKEGKDPLRSWSKLKKKMLAKFVTKDYTQDLFIKLSNLKQKEKTVEAYLREFEQLTLQC 209

Query: 843  NVEEDREATMSRFLVGLNREIANAVELQHYVELEDMVHMAIKIENQLKRRGSTCPSQNPS 1022
             + E  E  ++RFL GL++ IA  V +Q     +D+V++++++E    + G T P     
Sbjct: 210  EINEKSEQRIARFLEGLDKNIAAEVRMQPLWSYDDVVNLSLRVE----KMGKTKPVATRP 265

Query: 1023 TSAWKSNHWKKDEKQLMMKPKTE*KKKQPAMEIKVNP 1133
               ++     K        P++   K +  M  K+NP
Sbjct: 266  KPVFRPYSSVKINDPPKTTPQSTVDKGKAPMNPKINP 302



 Score = 78.6 bits (192), Expect = 3e-11
 Identities = 41/91 (45%), Positives = 60/91 (65%)
 Frame = +3

Query: 1926 AKASEIKRAMFSNQPMIVLLYKEAYFNANQLNASLPSSVVSLLQDFDDIFPKEIPNGLPP 2105
            A   EI++A    QP+++LL +E      + N  +P++V  L+Q F ++FP E+P+GLPP
Sbjct: 548  AMIKEIRQA----QPVLMLLSREVN---QEENTVVPTAVAPLIQRFQEVFPDELPSGLPP 600

Query: 2106 IRGIEHQIDFVLGATIPN*PA*RSNPE*TKE 2198
            +RGIEH ID V G+ +PN PA R +P  TKE
Sbjct: 601  LRGIEHHIDLVPGSVLPNKPAYRCDPNATKE 631


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