BLASTX nr result
ID: Akebia22_contig00012158
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Akebia22_contig00012158
(5065 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana] 924 0.0
gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group] 852 0.0
gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Ja... 830 0.0
gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sa... 827 0.0
gb|AAM94350.1| gag-pol polyprotein [Zea mays] 826 0.0
gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japoni... 826 0.0
dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group] 822 0.0
gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japoni... 819 0.0
gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum... 818 0.0
gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare] 818 0.0
gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japoni... 816 0.0
gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare] 815 0.0
gb|AAM15062.1| putative retroelement integrase [Arabidopsis thal... 795 0.0
gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum ... 789 0.0
gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum ... 788 0.0
gb|ADP20179.1| gag-pol polyprotein [Silene latifolia] 717 0.0
gb|ABF97027.1| retrotransposon protein, putative, Ty3-gypsy subc... 828 0.0
emb|CAN74973.1| hypothetical protein VITISV_001042 [Vitis vinifera] 704 0.0
emb|CAN80356.1| hypothetical protein VITISV_003506 [Vitis vinifera] 837 0.0
gb|ADP20178.1| gag-pol polyprotein [Silene latifolia] 712 0.0
>gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana]
Length = 1887
Score = 924 bits (2387), Expect(3) = 0.0
Identities = 428/596 (71%), Positives = 518/596 (86%)
Frame = +1
Query: 2146 PPFQTDQLKGVTPSRQRKVIELMEKGYVRENMSPCAVLVILVPKKDRLWRMCVDCRAINN 2325
P ++T+ ++ T +++V ELME+G++RE+MSPCAV V+LVPKKD WRMCVDCRAINN
Sbjct: 914 PAYRTNPVE--TKELEKQVTELMERGHIRESMSPCAVPVLLVPKKDGSWRMCVDCRAINN 971
Query: 2326 IMVKYRHPIPRLDDMLDELHGSCVFSKIDLKSEYHRIRMKEGDEWKTKFKTKYGLYE*LV 2505
I VKYRHPIPRLDDMLDELHGS +FSK+DLKS YH+IRMKEGDEWKT FKT GLYE LV
Sbjct: 972 ITVKYRHPIPRLDDMLDELHGSSIFSKVDLKSGYHQIRMKEGDEWKTAFKTIQGLYEWLV 1031
Query: 2506 MPFGLINATSTFMRLMNHVLRAFIENFVVIYFDDILIYSQNLDDHLMHLKLVLDVLRKEK 2685
MPFGL NA STFMRLMNHVLRAFI FV++YFDDIL+YS++L++H+ HLK+VL+VLRKEK
Sbjct: 1032 MPFGLTNAPSTFMRLMNHVLRAFIGRFVIVYFDDILVYSKSLEEHVEHLKMVLEVLRKEK 1091
Query: 2686 LFANLKKCTFCTNKHVFLGFVTSTQGIQVDEEKIHAIQEWPSPTSVSNV*SFHGLASFYR 2865
L+ANLKKCTF T+ VFLGFV ST G++VDEEK+ AI+EWPSP SV V SFHGLA FYR
Sbjct: 1092 LYANLKKCTFGTDNLVFLGFVVSTDGVKVDEEKVKAIREWPSPKSVGEVRSFHGLAGFYR 1151
Query: 2866 RFVKDFNSIAAPITKVIKKNAGFKWGEEQEKAFQLIKQKLTHAPLHALPNFAKAFEIDCD 3045
RFVKDF+++AAP+T+VIKKN GFKW + QE AFQ +K+KLTHAP+ +LP+F K FEI+CD
Sbjct: 1152 RFVKDFSTLAAPLTEVIKKNVGFKWEQAQEDAFQALKEKLTHAPVLSLPDFLKTFEIECD 1211
Query: 3046 ALGLGIGVVLIQEGRPLAYFSEKLSGAALNYPTYDKEMYALVRSLETWQYYLWPKEFVIH 3225
A G+GIGVVL+Q+ +P+AYFSEKL GA LNYPTYDKE+YALVR+L+T Q+YLWPKEFVIH
Sbjct: 1212 ASGVGIGVVLMQDKKPIAYFSEKLGGATLNYPTYDKELYALVRALQTGQHYLWPKEFVIH 1271
Query: 3226 IDHESLKHLRGQHKLNKGRARWVEFFETFPYVIQYKQGKENIVADALSRRYILISTLDAK 3405
DHESLKHL+GQ KLNK ARWVEF ETFPYVI+YK+GK+N+VADALSRRY+L+S+LDAK
Sbjct: 1272 TDHESLKHLKGQQKLNKRHARWVEFIETFPYVIKYKKGKDNVVADALSRRYVLLSSLDAK 1331
Query: 3406 ILGFEHIKELYPLDHDFNEEYESCEETTNGKYFRHEGFLFRENKLCIPNCSVRDLLVRES 3585
+LGFEHIK LY D DF + Y SCE+ GKY+RH+GFLF +N+LCIPN S+R+L +RE+
Sbjct: 1332 LLGFEHIKSLYANDSDFEKIYSSCEKFAFGKYYRHDGFLFYDNRLCIPNSSLRELFIREA 1391
Query: 3586 HGGGLMGHFGVAKTLAILQEHFYWPHMKRDVERICGRCVTCRQAKSRVPPHGLYTPLPIP 3765
HGGGLMGHFGV+KT+ ++Q+HF+WPHMKRDVERIC RC TC+QAK++ PHGLYTPLPIP
Sbjct: 1392 HGGGLMGHFGVSKTIKVMQDHFHWPHMKRDVERICERCPTCKQAKAKSQPHGLYTPLPIP 1451
Query: 3766 STPWIDISMDFMLGLPRSKRGRDSVFVVVDRFSKMAHFIPCHNMNDASHVADLLGR 3933
S PW DISMDF++GLPR++ G+DS+FVVVDRFSKMAHFIPCH +DA H+A+L R
Sbjct: 1452 SHPWNDISMDFVVGLPRTRTGKDSIFVVVDRFSKMAHFIPCHKTDDAIHIANLFFR 1507
Score = 212 bits (539), Expect(3) = 0.0
Identities = 102/157 (64%), Positives = 129/157 (82%), Gaps = 1/157 (0%)
Frame = +2
Query: 4172 AYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSERVNLDGKKKAEFVKQIHEKARLNI 4351
AYN ++HSA+KF PF+IVY FNP TPLDL PLP+SERV+LDGKKKAE V+QIHE+A+ NI
Sbjct: 1589 AYNHSMHSASKFSPFQIVYGFNPTTPLDLMPLPLSERVSLDGKKKAELVQQIHEQAKKNI 1648
Query: 4352 E*RTEQYAKQANKGRHKIVFEAEDWVWLHMRKERFPAQRRSKLLPRGDGPFQVLEHINDN 4531
E +T+QYAK ANK R +++F D VW+H+RKERFP +R+SKL+ R DGPF+VL+ IN+N
Sbjct: 1649 EEKTKQYAKHANKSRKEVIFNEGDLVWIHLRKERFPKERKSKLMSRIDGPFKVLKRINNN 1708
Query: 4532 AYKLDLPGEYNVSATFNVSDLSPFDVGD-DWRTNPFQ 4639
AY LDL G+YNVS +FNV+DL PF + D R+NPFQ
Sbjct: 1709 AYSLDLQGKYNVSNSFNVADLFPFIADNTDLRSNPFQ 1745
Score = 157 bits (398), Expect(3) = 0.0
Identities = 72/83 (86%), Positives = 77/83 (92%)
Frame = +3
Query: 3921 FVREIVRLHGMPRTIVPDRDAKFLSYFWKTLWCKLGTKLLFSTTCHPQTDGQMEVVNRTL 4100
F RE+VRLHGMP+TIV DRD KFLSYFWKTLW KLGTKLLFSTTCHPQTDGQ EVVNRTL
Sbjct: 1505 FFREVVRLHGMPKTIVSDRDTKFLSYFWKTLWSKLGTKLLFSTTCHPQTDGQTEVVNRTL 1564
Query: 4101 STLLWAIIKKNIKTWEECLPHVE 4169
STLL A+IKKN+KTWE+CLPHVE
Sbjct: 1565 STLLRALIKKNLKTWEDCLPHVE 1587
Score = 220 bits (561), Expect(2) = 6e-98
Identities = 114/231 (49%), Positives = 158/231 (68%), Gaps = 7/231 (3%)
Frame = +3
Query: 420 SPRKFGRVRGARNRED-----NNLSSIKMKIPLFQGKNDPEAYLEWEKKVELVFDCHNYS 584
S R+ R +RE+ ++L+ +K++IP F+G NDP+ YLEWEKK+ELVF+C Y+
Sbjct: 411 SSRQTNHRRRRHDREERVLPRDDLAGLKIRIPSFKGTNDPDEYLEWEKKIELVFNCQQYT 470
Query: 585 ENKKVKLAAIEFSDYAFVW*DQLVLNRRRNRERPIETWEEMKTVMRKRFVPSYYYRELYN 764
E KVK+A EF +YA W DQLV RRR + PIE+W +MKT+MRKRFVPS+YYREL+N
Sbjct: 471 EESKVKVAPTEFQNYALSWWDQLVTTRRRAGDYPIESWTQMKTIMRKRFVPSHYYRELHN 530
Query: 765 KLQSLKQGNRSXXXXXXXXXXXXIRANVEEDREATMSRFLVGLNREIANAVELQHYVELE 944
+L++L QGN+S +RA+++ED EA MSRF+ GLNR+I + +E+QHYVELE
Sbjct: 531 RLRNLVQGNKSVEEYYKEMETLMLRADIQEDNEAIMSRFMGGLNRDIIDRLEVQHYVELE 590
Query: 945 DMVHMAIKIENQLKRRGS--TCPSQNPSTSAWKSNHWKKDEKQLMMKPKTE 1091
+++H AI E QLKRR S + S PS + + ++KD K +KPK E
Sbjct: 591 ELLHKAIMFEKQLKRRSSKPSFGSGKPSYHKDERSGFQKDYKP-FIKPKVE 640
Score = 168 bits (425), Expect(2) = 6e-98
Identities = 86/174 (49%), Positives = 112/174 (64%), Gaps = 1/174 (0%)
Frame = +2
Query: 1091 VKKEATSHGNQGKSDSSTSRNHDIKCFKCQGRGHIASQCPNKRVMVLRXXXXXXXXXXXX 1270
+K + +GK + +R DIK FKCQG GH AS+C NKR+M+++
Sbjct: 635 IKPKVEDQDQKGKGKAVMTRTRDIKGFKCQGHGHYASECSNKRIMIIKDTGEIESEDEQL 694
Query: 1271 XXFMPPLEDANDKEYAAQG-GDLLVARRALSVQAKEDGEVQLENIFHTRCHVQNKVCSVI 1447
E ++ ++Y A G+LLV +ALSV AK D + Q EN+FH+ C V +KVCS+I
Sbjct: 695 E------ESSSTEDYEAPSKGELLVTMKALSVIAKTDEQEQRENLFHSSCMVNDKVCSLI 748
Query: 1448 IDGGSCTNVASTIMVEKLGLQTTKHPRPYKLQWLNDSGEVKVNKQVLVSFCIGK 1609
IDGGSCTNVAS MVEKLGL+ KHPRPYKLQWLN+ GE+ V++QV V IGK
Sbjct: 749 IDGGSCTNVASETMVEKLGLKVMKHPRPYKLQWLNEDGEMSVDRQVKVPLSIGK 802
Score = 89.4 bits (220), Expect = 2e-14
Identities = 45/102 (44%), Positives = 67/102 (65%)
Frame = +3
Query: 1893 ERKTERKTNFYAKASEIKRAMFSNQPMIVLLYKEAYFNANQLNASLPSSVVSLLQDFDDI 2072
+++T + +N S+ K + F + ++ ++KE + ++PS + LLQD+ D+
Sbjct: 825 KKQTVKPSNLMINESKQKGSGFQSSKLL-FVFKETLMSLTNPEQAIPSKIKFLLQDYTDV 883
Query: 2073 FPKEIPNGLPPIRGIEHQIDFVLGATIPN*PA*RSNPE*TKE 2198
FP+E P GLPPIRGIEHQIDFV GA++PN PA R+NP TKE
Sbjct: 884 FPEENPVGLPPIRGIEHQIDFVPGASLPNRPAYRTNPVETKE 925
>gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1713
Score = 852 bits (2200), Expect(3) = 0.0
Identities = 401/583 (68%), Positives = 485/583 (83%), Gaps = 1/583 (0%)
Frame = +1
Query: 2179 TPSRQRKVIELMEKGYVRENMSPCAVLVILVPKKDRLWRMCVDCRAINNIMVKYRHPIPR 2358
T QR+V L++KGYVRE++SPCAV VILVPKKD WRMCVDCRAINNI V+YRHPIPR
Sbjct: 734 TKEIQRQVQALLDKGYVRESLSPCAVPVILVPKKDGSWRMCVDCRAINNITVRYRHPIPR 793
Query: 2359 LDDMLDELHGSCVFSKIDLKSEYHRIRMKEGDEWKTKFKTKYGLYE*LVMPFGLINATST 2538
LDDMLDEL GS +FSKIDL+S +H+IRMK GDEWKT FKTK+GLYE LVMPFGL NA ST
Sbjct: 794 LDDMLDELSGSMIFSKIDLRSGFHQIRMKIGDEWKTAFKTKFGLYEWLVMPFGLTNAPST 853
Query: 2539 FMRLMNHVLRAFIENFVVIYFDDILIYSQNLDDHLMHLKLVLDVLRKEKLFANLKKCTFC 2718
FMRLMNHVLRAFI FVV+YFDDILIYS+ L++H+ H++ VLDVLRKE+L+ANL+KCTFC
Sbjct: 854 FMRLMNHVLRAFIGKFVVVYFDDILIYSKTLEEHVAHIQQVLDVLRKEQLYANLEKCTFC 913
Query: 2719 TNKHVFLGFVTSTQGIQVDEEKIHAIQEWPSPTSVSNV*SFHGLASFYRRFVKDFNSIAA 2898
T++ VFLGFV S GIQVDE K+ AI++WP+P +VS V SF GLA FYRRFV+ F++IAA
Sbjct: 914 TDQVVFLGFVVSGLGIQVDESKVKAIKDWPTPENVSQVKSFRGLAGFYRRFVRGFSTIAA 973
Query: 2899 PITKVIKKNAGFKWGEEQEKAFQLIKQKLTHAPLHALPNFAKAFEIDCDALGLGIGVVLI 3078
P+ ++ KK F+WGE QEKAFQ +K++L+ PL LP+F K FE++CDA G+GIG VL+
Sbjct: 974 PLNELTKKGVAFQWGEPQEKAFQELKKRLSEGPLLVLPDFTKTFEVECDASGIGIGGVLM 1033
Query: 3079 QEGRPLAYFSEKLSGAALNYPTYDKEMYALVRSLETWQYYLWPKEFVIHIDHESLKHLRG 3258
Q G+P+AYFSEKL GA LNY YDKE+YALVR+LETWQ+YLWPKEFVIH DHE+LK+L+G
Sbjct: 1034 QNGQPVAYFSEKLGGAQLNYSVYDKELYALVRALETWQHYLWPKEFVIHSDHEALKYLKG 1093
Query: 3259 QHKLNKGRARWVEFFETFPYVIQYKQGKENIVADALSRRYILISTLDAKILGFEHIKELY 3438
Q KLN+ A+WVEF ETFPYV++YK+GKENIVADALSR+ +L++ L+ K+ G E IKELY
Sbjct: 1094 QAKLNRRHAKWVEFIETFPYVVKYKKGKENIVADALSRKNVLLNQLEVKVTGIESIKELY 1153
Query: 3439 PLDHDFNEEYESCEETTN-GKYFRHEGFLFRENKLCIPNCSVRDLLVRESHGGGLMGHFG 3615
D DF+E Y C KY H+GFLFR NKLC+P+CSVR LL++E+H GGLMGHFG
Sbjct: 1154 SADLDFSEPYAKCTAGKGWEKYHIHDGFLFRANKLCVPHCSVRLLLLQETHAGGLMGHFG 1213
Query: 3616 VAKTLAILQEHFYWPHMKRDVERICGRCVTCRQAKSRVPPHGLYTPLPIPSTPWIDISMD 3795
KT +L +HFYWP M+RDV+R+ RCVTC +AKS++ PHGLYTPLP+PS PW DISMD
Sbjct: 1214 WRKTYDMLADHFYWPKMRRDVQRLVQRCVTCHKAKSKLNPHGLYTPLPVPSAPWEDISMD 1273
Query: 3796 FMLGLPRSKRGRDSVFVVVDRFSKMAHFIPCHNMNDASHVADL 3924
F+LGLPR+KRGRDS+FVVVDRFSKMAHFIPCH +DASH+A L
Sbjct: 1274 FVLGLPRTKRGRDSIFVVVDRFSKMAHFIPCHKSDDASHIASL 1316
Score = 198 bits (503), Expect(3) = 0.0
Identities = 97/189 (51%), Positives = 132/189 (69%), Gaps = 8/189 (4%)
Frame = +2
Query: 4172 AYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSERVNLDGKKKAEFVKQIHEKARLNI 4351
AYN +HS T PFE+VY F PL+P+DL PLP+ ER +++ K+A +VK+IHEK + I
Sbjct: 1401 AYNRAVHSTTNMCPFEVVYGFKPLSPIDLLPLPLQERSDMEASKRATYVKKIHEKTKEAI 1460
Query: 4352 E*RTEQYAKQANKGRHKIVFEAEDWVWLHMRKERFPAQRRSKLLPRGDGPFQVLEHINDN 4531
E R++ YA ANK R K+ FE D VW+H+RK+RFP +R+SKL+PRGDGPF+VL INDN
Sbjct: 1461 EKRSKYYAAWANKNRKKVTFEPGDLVWVHLRKDRFPQKRKSKLMPRGDGPFRVLSKINDN 1520
Query: 4532 AYKLDLPGEYNVSATFNVSDLSPF---DVGDDWRTNPFQEEGNDANHGTVTRTQANK--- 4693
AYK++LP +Y VS+TFNV+DL+PF + + R+ PFQE +D + TV T + K
Sbjct: 1521 AYKIELPEDYGVSSTFNVADLTPFFGLEDSESSRSTPFQEGEDDEDIPTVHATSSTKQPS 1580
Query: 4694 --FKDALSG 4714
KD + G
Sbjct: 1581 SNTKDTIQG 1589
Score = 151 bits (382), Expect(3) = 0.0
Identities = 70/83 (84%), Positives = 74/83 (89%)
Frame = +3
Query: 3921 FVREIVRLHGMPRTIVPDRDAKFLSYFWKTLWCKLGTKLLFSTTCHPQTDGQMEVVNRTL 4100
F EIVRLHGMP+TIV DRD KFLSYFWKTLW KLGT+LLFSTTCHPQTDGQ EVVNRTL
Sbjct: 1317 FFSEIVRLHGMPKTIVSDRDTKFLSYFWKTLWAKLGTRLLFSTTCHPQTDGQTEVVNRTL 1376
Query: 4101 STLLWAIIKKNIKTWEECLPHVE 4169
S LL A+IKKN+K WEECLPHVE
Sbjct: 1377 SMLLRALIKKNLKEWEECLPHVE 1399
Score = 195 bits (495), Expect(2) = 2e-89
Identities = 106/248 (42%), Positives = 140/248 (56%)
Frame = +2
Query: 1073 DEAKNRVKKEATSHGNQGKSDSSTSRNHDIKCFKCQGRGHIASQCPNKRVMVLRXXXXXX 1252
+E KN +TS G+ KS I+CFKC GRGH+A +CPN R +V+
Sbjct: 364 NERKNAANTSSTSVGSSTKSSG-------IQCFKCGGRGHVARECPNNRTIVVNDQGEYE 416
Query: 1253 XXXXXXXXFMPPLEDANDKEYAAQGGDLLVARRALSVQAKEDGEVQLENIFHTRCHVQNK 1432
+ + G LV + LSVQ + Q N+F TR VQ+K
Sbjct: 417 STSEEEQEDSEEENNLEKDICEFESGAALVVTQILSVQMSDAENGQRHNLFQTRAKVQDK 476
Query: 1433 VCSVIIDGGSCTNVASTIMVEKLGLQTTKHPRPYKLQWLNDSGEVKVNKQVLVSFCIGKY 1612
V VIIDGGSC N+AS MVEKLGL+ KHP PY +QWLN+SG +K+ ++V V F IG+Y
Sbjct: 477 VVKVIIDGGSCHNLASKEMVEKLGLKLLKHPHPYHVQWLNNSGSIKIAQRVKVPFKIGEY 536
Query: 1613 EDEVLCDVVPMQAGHLLLGRPWQFDRRVKHDGSTNKYSFVLNQRTITLVPLTPKQVHEDQ 1792
D + CDV PM H+LLGRPWQ+DR H G TN+Y+ + + L P+TP+Q+ +
Sbjct: 537 IDTMECDVAPMTVCHMLLGRPWQYDRSSLHCGRTNQYTIKWKGKELILKPMTPQQILAEH 596
Query: 1793 VILQKESE 1816
LQK SE
Sbjct: 597 --LQKSSE 602
Score = 165 bits (418), Expect(2) = 2e-89
Identities = 86/217 (39%), Positives = 125/217 (57%), Gaps = 5/217 (2%)
Frame = +3
Query: 396 DEGEDSTGSPRKFGRVRGARNREDNNLSSIKMKIPLFQGKNDPEAYLEWEKKVELVFDCH 575
+E E R+ RG + +K +P F+G +DPE YL WE KV+ +F H
Sbjct: 111 EEVEQPHRDDRRHRGNRGRNQPNEERFGKLKFTMPKFEGGSDPEVYLTWELKVDKIFRLH 170
Query: 576 NYSENKKVKLAAIEFSDYAFVW*DQLVLNRRRNRERPIETWEEMKTVMRKRFVPSYYYRE 755
NYSE KKV +AA+EF YA +W +Q++ R + + +W EMK MR RFVP +Y R+
Sbjct: 171 NYSERKKVAMAALEFDGYALIWWEQMLNEREEAGQGDVRSWAEMKREMRARFVPKHYRRD 230
Query: 756 LYNKLQSLKQGNRSXXXXXXXXXXXXIRANVEEDREATMSRFLVGLNREIANAVELQHYV 935
L++KLQ+LKQG+ S IRANV ED E +++RF+ GL+R I VE Q Y
Sbjct: 231 LFDKLQNLKQGSLSVDEYYKEMEKAMIRANVYEDEEQSIARFMSGLHRNIQRIVEFQQYR 290
Query: 936 ELEDMVHMAIKIENQLKR-----RGSTCPSQNPSTSA 1031
L ++VH A K E QL++ RG + ++N ++ +
Sbjct: 291 NLIELVHQASKAERQLQQDMKSNRGVSFSTKNAASGS 327
Score = 90.1 bits (222), Expect = 1e-14
Identities = 43/78 (55%), Positives = 59/78 (75%)
Frame = +3
Query: 1965 QPMIVLLYKEAYFNANQLNASLPSSVVSLLQDFDDIFPKEIPNGLPPIRGIEHQIDFVLG 2144
Q + +L+ K+ +AN L S+PS V +LQ+++D+FP+E P GLPP+RGIEHQID + G
Sbjct: 660 QVLFILVCKDTLLSANDLT-SVPSVVARVLQEYEDVFPEETPVGLPPLRGIEHQIDLIPG 718
Query: 2145 ATIPN*PA*RSNPE*TKE 2198
AT+PN PA R+NPE TKE
Sbjct: 719 ATLPNRPAYRTNPEETKE 736
>gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Japonica Group]
gi|31431012|gb|AAP52850.1| retrotransposon protein,
putative, Ty3-gypsy subclass [Oryza sativa Japonica
Group]
Length = 2447
Score = 830 bits (2143), Expect(3) = 0.0
Identities = 396/596 (66%), Positives = 480/596 (80%), Gaps = 1/596 (0%)
Frame = +1
Query: 2149 PFQTDQLKGVTPSRQRKVIELMEKGYVRENMSPCAVLVILVPKKDRLWRMCVDCRAINNI 2328
P++T+ + T QR+V EL++KGYVRE++SPCAV VILVPKKD WRMCVDCRAINNI
Sbjct: 723 PYRTNPEE--TKEIQRQVHELLDKGYVRESLSPCAVPVILVPKKDGSWRMCVDCRAINNI 780
Query: 2329 MVKYRHPIPRLDDMLDELHGSCVFSKIDLKSEYHRIRMKEGDEWKTKFKTKYGLYE*LVM 2508
++YRHPIPRLDDMLDEL GS VFSK+DL+S YH+IRMK GDEWKT FKTK+GLYE LVM
Sbjct: 781 TIRYRHPIPRLDDMLDELSGSIVFSKVDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVM 840
Query: 2509 PFGLINATSTFMRLMNHVLRAFIENFVVIYFDDILIYSQNLDDHLMHLKLVLDVLRKEKL 2688
PFGL NA STFMRLMN VLR FI FVV+YFDDILIYS+++ +H HL+ V + LR +L
Sbjct: 841 PFGLTNAPSTFMRLMNEVLRPFIGKFVVVYFDDILIYSKSMGEHFNHLRAVFNALRDARL 900
Query: 2689 FANLKKCTFCTNKHVFLGFVTSTQGIQVDEEKIHAIQEWPSPTSVSNV*SFHGLASFYRR 2868
F NL+KCTFCT++ FLG+V + QGI+VD+ K+ AIQ WP+P +VS V SF GLA FYRR
Sbjct: 901 FGNLEKCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIQSWPTPKTVSQVRSFLGLAGFYRR 960
Query: 2869 FVKDFNSIAAPITKVIKKNAGFKWGEEQEKAFQLIKQKLTHAPLHALPNFAKAFEIDCDA 3048
FV+DF++IAAP+ + KK F WG QE AF ++K KLTHAPL LP+F K FE++CDA
Sbjct: 961 FVQDFSTIAAPLNVLTKKGVPFTWGTSQENAFHMLKDKLTHAPLLQLPDFNKTFELECDA 1020
Query: 3049 LGLGIGVVLIQEGRPLAYFSEKLSGAALNYPTYDKEMYALVRSLETWQYYLWPKEFVIHI 3228
G+G+G VL+QEG+P+AYFSEKLSG LNY TYDKE+YALVR+LETWQ+YLWPKEFVIH
Sbjct: 1021 SGIGLGGVLLQEGKPVAYFSEKLSGPVLNYSTYDKELYALVRTLETWQHYLWPKEFVIHS 1080
Query: 3229 DHESLKHLRGQHKLNKGRARWVEFFETFPYVIQYKQGKENIVADALSRRYILISTLDAKI 3408
DHESLKH+R Q KLN+ A+WVEF E+FPYVI++K+GKENI+ADALSRRY L++ LD KI
Sbjct: 1081 DHESLKHIRSQGKLNRRHAKWVEFIESFPYVIKHKKGKENIIADALSRRYTLLTQLDYKI 1140
Query: 3409 LGFEHIKELYPLDHDFNEEYESCEE-TTNGKYFRHEGFLFRENKLCIPNCSVRDLLVRES 3585
G E IK+ Y D DFN+ C++ T K+ ++GF+FR NKLCIP SVR LL++E+
Sbjct: 1141 FGLETIKDQYAHDADFNDVLLHCKDGRTWNKFVINDGFVFRANKLCIPASSVRLLLLQEA 1200
Query: 3586 HGGGLMGHFGVAKTLAILQEHFYWPHMKRDVERICGRCVTCRQAKSRVPPHGLYTPLPIP 3765
HGGGLMGHFG KT IL HF+WP M+RDV R RC TC++AKSR+ PHGLY PLP+P
Sbjct: 1201 HGGGLMGHFGAKKTHDILASHFFWPQMRRDVGRFVARCATCQKAKSRLHPHGLYMPLPVP 1260
Query: 3766 STPWIDISMDFMLGLPRSKRGRDSVFVVVDRFSKMAHFIPCHNMNDASHVADLLGR 3933
+ PW DISMDF+LGLPR+KRGRDS+FVVVDRFSKMAHFIPCH +DASH+ADL R
Sbjct: 1261 TVPWEDISMDFVLGLPRTKRGRDSIFVVVDRFSKMAHFIPCHKTDDASHIADLFFR 1316
Score = 174 bits (440), Expect(3) = 0.0
Identities = 85/170 (50%), Positives = 115/170 (67%), Gaps = 3/170 (1%)
Frame = +2
Query: 4172 AYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSERVNLDGKKKAEFVKQIHEKARLNI 4351
AYN ++HS TK PF+IVY P P+DL PLP SE++N D K++AE + ++HE + NI
Sbjct: 1398 AYNRSLHSTTKMCPFQIVYGLLPRAPIDLMPLPSSEKLNFDAKQRAELMLKLHETTKENI 1457
Query: 4352 E*RTEQYAKQANKGRHKIVFEAEDWVWLHMRKERFPAQRRSKLLPRGDGPFQVLEHINDN 4531
E +Y +KGR ++ FE D VWLH+RKERFP R+SKL+PR DGPF+VL IN+N
Sbjct: 1458 ERMNAKYKFAGDKGRRELTFEPGDLVWLHLRKERFPDLRKSKLMPRADGPFKVLAKINEN 1517
Query: 4532 AYKLDLPGEYNVSATFNVSDLSPFDVGDD---WRTNPFQEEGNDANHGTV 4672
AYK+DLP ++ VS TFNV+DL P+ +D RT QE +D + T+
Sbjct: 1518 AYKIDLPADFGVSPTFNVADLKPYLGEEDELESRTTQMQEGEDDEDINTI 1567
Score = 151 bits (381), Expect(3) = 0.0
Identities = 68/83 (81%), Positives = 75/83 (90%)
Frame = +3
Query: 3921 FVREIVRLHGMPRTIVPDRDAKFLSYFWKTLWCKLGTKLLFSTTCHPQTDGQMEVVNRTL 4100
F REIVRLHG+P TIV DRD KFLS+FW+TLW KLGTKLLFSTTCHPQTDGQ EVVNRTL
Sbjct: 1314 FFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRTL 1373
Query: 4101 STLLWAIIKKNIKTWEECLPHVE 4169
ST+L A++KKNIK WEECLPH+E
Sbjct: 1374 STMLRAVLKKNIKMWEECLPHIE 1396
Score = 362 bits (930), Expect(3) = e-124
Identities = 204/564 (36%), Positives = 314/564 (55%), Gaps = 33/564 (5%)
Frame = +1
Query: 2332 VKYRHPIPRLDDMLDELHGSCVFSKIDLKSEYHRIRMKEGDEWKTKFK--TKYGLYE*LV 2505
+++ PI R C ++D +H+ GD+ T YGLYE V
Sbjct: 1575 IQHDGPITRARARQLNYQDECPRGRVDA---HHKFAATIGDDRATNPSGFASYGLYEFTV 1631
Query: 2506 MPFGLINATSTFMRLMNHVLRAFIENFVVIYFDDILIYSQNLDDHLMHLKLVLDVLRKEK 2685
M FGL NA + FM LMN V +++ FVV++ DDIL+YSQ+ +DH HL+LVL LR+ +
Sbjct: 1632 MSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILVYSQSEEDHQHHLRLVLGKLREHQ 1691
Query: 2686 LFANLKKCTFCTNKHVFLGFVTSTQGIQVDEEKIHAIQEWPSPTSVSNV*SFHGLASFYR 2865
L+A L KC F ++ FLG V S +G+ VD E + A+ +W P +V+ + SF GLA +YR
Sbjct: 1692 LYAKLSKCEFWLSEVKFLGHVISAKGVAVDPETVTAVTDWKQPKTVTQIRSFLGLAGYYR 1751
Query: 2866 RFVKDFNSIAAPITKVIKKNAGFKWGEEQEKAFQLIKQKLTHAPLHALPNFAKAFEIDCD 3045
RF+++F+ IA P+T+++KK F W + EKAFQ +K+KL +P+ LP+ K F + CD
Sbjct: 1752 RFIENFSKIARPMTQLLKKEEKFVWSPQCEKAFQTLKEKLVSSPVLILPDTRKDFMVYCD 1811
Query: 3046 ALGLGIGVVLIQEGRPLAYFSEKLSGAALNYPTYDKEMYALVRSLETWQYYLWPKEFVIH 3225
A G+G VL+QEG +AY S +L NYPT+D E+ A+V +L+ W++YL I+
Sbjct: 1812 ASPQGLGCVLMQEGHVVAYASRQLWPHEGNYPTHDLELAAVVHALKIWRHYLIGNRCEIY 1871
Query: 3226 IDHESLKHLRGQHKLNKGRARWVEFFETFPYVIQYKQGKENIVADALSRRYI-------- 3381
DH+SLK++ Q LN + RW+E + + I Y GK N+VADALSR+
Sbjct: 1872 TDHKSLKYIFTQSDLNLRQRRWLELIKDYDVGIHYHPGKANVVADALSRKSHCNTLGVRG 1931
Query: 3382 --------------------LISTLDAKILGFEHIKELYPLDHDFNEEYESCEETTNGKY 3501
++TL+AK + I+E D D ++ ++ +
Sbjct: 1932 IPPELNQQMEALNLSIVSRGFLATLEAKPTLLDQIREAQKNDPDMRGLLKNMKQGKAAGF 1991
Query: 3502 FRHE-GFLFRENKLCIPNC-SVRDLLVRESHGGGLMGHFGVAKTLAILQEHFYWPHMKRD 3675
E G L+ N++C+P+ ++ L+++E+H H G K L+E ++W MKR+
Sbjct: 1992 IEDEHGTLWNRNRVCVPDVRELKQLILQEAHESPYSIHPGSTKMYLDLKEKYWWVSMKRE 2051
Query: 3676 VERICGRCVTCRQAKS-RVPPHGLYTPLPIPSTPWIDISMDFMLGLPRSKRGRDSVFVVV 3852
+ C C++ K+ P GL PL +P W +I MDF+ GLP+++ G DS++VVV
Sbjct: 2052 IAEFVALCDVCQRVKAEHQRPAGLLQPLQVPEWKWDEIGMDFITGLPKTQGGYDSIWVVV 2111
Query: 3853 DRFSKMAHFIPCHNMNDASHVADL 3924
DR +K+A FIP + +A+L
Sbjct: 2112 DRLTKVARFIPVKTTYGGNKLAEL 2135
Score = 86.7 bits (213), Expect(3) = e-124
Identities = 41/83 (49%), Positives = 57/83 (68%)
Frame = +3
Query: 3921 FVREIVRLHGMPRTIVPDRDAKFLSYFWKTLWCKLGTKLLFSTTCHPQTDGQMEVVNRTL 4100
+ IV LHG+P+ IV DR+++F S+FWK L +LGT+L FST HPQTDGQ E +N+ L
Sbjct: 2136 YFARIVSLHGVPKKIVSDRESQFTSHFWKKLQEELGTRLNFSTAYHPQTDGQTERLNQIL 2195
Query: 4101 STLLWAIIKKNIKTWEECLPHVE 4169
+L A + KTW++ LP+ E
Sbjct: 2196 EDMLHACVLDFGKTWDKSLPYAE 2218
Score = 50.8 bits (120), Expect(3) = e-124
Identities = 41/145 (28%), Positives = 71/145 (48%), Gaps = 4/145 (2%)
Frame = +2
Query: 4172 AYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSERVNLDGKKKAEF-VKQIHEKARLN 4348
+YN + ++ + P+E +Y TPL + S+ D ++AE V+ I + N
Sbjct: 2220 SYNNSYQASIQMAPYEALYGRKCRTPLLWDQVGESQVFGTDILREAEAKVRTIWD----N 2275
Query: 4349 IE*RTEQYAKQANKGRHKIVFEAEDWVWLHMRKER--FPAQRRSKLLPRGDGPFQVLEHI 4522
++ + A+ R + F +D+V+L + R Q + KL PR GPF+++
Sbjct: 2276 LKVAQSRQKSYADNRRRNLEFAVDDFVYLRVTPLRGVHRFQTKGKLAPRFVGPFRIIARR 2335
Query: 4523 NDNAYKLDLPGEY-NVSATFNVSDL 4594
+ AY+L+LP NV F+VS L
Sbjct: 2336 GEVAYQLELPASLGNVHDVFHVSQL 2360
Score = 190 bits (483), Expect(3) = e-105
Identities = 100/248 (40%), Positives = 143/248 (57%), Gaps = 9/248 (3%)
Frame = +2
Query: 1100 EATSHGNQGKSDSSTSRNHDIKCFKCQGRGHIASQCPNKRVMVLRXXXXXXXXXXXXXXF 1279
+A S +ST R D++C +C+G GH+ CP+KRV+V++
Sbjct: 370 KAAQPAPSASSMASTGRMRDVQCHRCKGFGHVQRDCPSKRVLVVKNDGEYSSASDFDDDT 429
Query: 1280 MPPLE-DANDKEYA--------AQGGDLLVARRALSVQAKEDGEVQLENIFHTRCHVQNK 1432
+ L D D E A + L+ +R LS Q ++ + Q +F T+C V+ +
Sbjct: 430 LALLAADHADNEPPEEHIGAAFADHYESLIVQRVLSAQMEKAEQNQRHTLFQTKCVVKER 489
Query: 1433 VCSVIIDGGSCTNVASTIMVEKLGLQTTKHPRPYKLQWLNDSGEVKVNKQVLVSFCIGKY 1612
C +IIDGGSC N+AS+ MVEKL L T HP PY +QWLN+SG+ KV K V ++F IG Y
Sbjct: 490 CCRMIIDGGSCNNLASSEMVEKLALSTKPHPHPYYIQWLNNSGKAKVTKLVHINFAIGNY 549
Query: 1613 EDEVLCDVVPMQAGHLLLGRPWQFDRRVKHDGSTNKYSFVLNQRTITLVPLTPKQVHEDQ 1792
D V CDVVPMQA ++LLGRPWQFDR H G +N+YSF+ + + I L ++P+ + D
Sbjct: 550 HDVVECDVVPMQACNILLGRPWQFDRDSMHHGRSNQYSFLYHDKKIVLHSMSPEDILRDD 609
Query: 1793 VILQKESE 1816
V +S+
Sbjct: 610 VAKAAKSK 617
Score = 157 bits (396), Expect(3) = e-105
Identities = 83/206 (40%), Positives = 121/206 (58%)
Frame = +3
Query: 435 GRVRGARNREDNNLSSIKMKIPLFQGKNDPEAYLEWEKKVELVFDCHNYSENKKVKLAAI 614
GR R D+ S IK KIP F GK DP+AYL WE V+ F CH + E+ +V+ A
Sbjct: 137 GRRRREVRNNDDAFSKIKFKIPPFDGKYDPDAYLSWEIAVDQKFACHEFPESTRVRAATS 196
Query: 615 EFSDYAFVW*DQLVLNRRRNRERPIETWEEMKTVMRKRFVPSYYYRELYNKLQSLKQGNR 794
EF+D+A VW + + ++N +TW+ +K VMR RFVPSYY R+L N+LQ L+QG +
Sbjct: 197 EFTDFASVW---WIEHGKKNPNNMPQTWDALKRVMRARFVPSYYARDLLNRLQQLRQGAK 253
Query: 795 SXXXXXXXXXXXXIRANVEEDREATMSRFLVGLNREIANAVELQHYVELEDMVHMAIKIE 974
S +R N+EE +A M+RFL GLNREI + V+ + Y + + H+A K E
Sbjct: 254 SVEEYYQELQMGLLRCNLEETEDAAMARFLGGLNREIYDIVDYKDYTNMTRLFHLACKAE 313
Query: 975 NQLKRRGSTCPSQNPSTSAWKSNHWK 1052
+++ R + S + SA K++ W+
Sbjct: 314 REVQGRRA---SAKANFSAGKTSSWQ 336
Score = 89.0 bits (219), Expect(3) = e-105
Identities = 42/91 (46%), Positives = 61/91 (67%)
Frame = +3
Query: 1926 AKASEIKRAMFSNQPMIVLLYKEAYFNANQLNASLPSSVVSLLQDFDDIFPKEIPNGLPP 2105
A S+I + S L+ K+A + + + SLP +V ++LQ++ D+FPKE+P GLPP
Sbjct: 643 ATKSDINELIASPSVAYALVCKDALISLHDMQHSLPPAVANILQEYSDVFPKEVPPGLPP 702
Query: 2106 IRGIEHQIDFVLGATIPN*PA*RSNPE*TKE 2198
+RGIEHQID + GA++PN R+NPE TKE
Sbjct: 703 VRGIEHQIDLIPGASLPNRAPYRTNPEETKE 733
>gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|15217296|gb|AAK92640.1|AC079634_1 Putative
retroelement [Oryza sativa Japonica Group]
gi|31431373|gb|AAP53161.1| retrotransposon protein,
putative, Ty3-gypsy subclass [Oryza sativa Japonica
Group]
Length = 1708
Score = 827 bits (2137), Expect(3) = 0.0
Identities = 393/596 (65%), Positives = 481/596 (80%), Gaps = 1/596 (0%)
Frame = +1
Query: 2149 PFQTDQLKGVTPSRQRKVIELMEKGYVRENMSPCAVLVILVPKKDRLWRMCVDCRAINNI 2328
P++T+ + T QR+V EL++KGYVRE++SPC++ V+LVPKKD WRMCVDCRAINNI
Sbjct: 751 PYRTNPEE--TKEIQRQVQELLDKGYVRESLSPCSIPVLLVPKKDGSWRMCVDCRAINNI 808
Query: 2329 MVKYRHPIPRLDDMLDELHGSCVFSKIDLKSEYHRIRMKEGDEWKTKFKTKYGLYE*LVM 2508
++YRHPIPRLDDMLDEL GS VFSKIDL+S YH+IRMK GDEWKT FKTK+GLYE LVM
Sbjct: 809 TIRYRHPIPRLDDMLDELSGSLVFSKIDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVM 868
Query: 2509 PFGLINATSTFMRLMNHVLRAFIENFVVIYFDDILIYSQNLDDHLMHLKLVLDVLRKEKL 2688
PFGL NA STF+RLMN VLRAFI FVV+YFDDILIYS++++DH HL+ V D LR E+L
Sbjct: 869 PFGLTNAPSTFIRLMNEVLRAFIGRFVVVYFDDILIYSRSIEDHHGHLRAVFDALRDERL 928
Query: 2689 FANLKKCTFCTNKHVFLGFVTSTQGIQVDEEKIHAIQEWPSPTSVSNV*SFHGLASFYRR 2868
F NL+KCTFCT++ FLG+V + QGI+VD+ K+ AI WP PT+++ V SF GLA FYRR
Sbjct: 929 FGNLEKCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIHSWPVPTTITQVRSFLGLAGFYRR 988
Query: 2869 FVKDFNSIAAPITKVIKKNAGFKWGEEQEKAFQLIKQKLTHAPLHALPNFAKAFEIDCDA 3048
FVKDF++IAAP+ ++ K+N F W Q AF +K KLTHAPL LP+F K FE++CDA
Sbjct: 989 FVKDFSTIAAPLHELTKRNVTFTWAAAQRNAFDTLKDKLTHAPLLQLPDFNKTFELECDA 1048
Query: 3049 LGLGIGVVLIQEGRPLAYFSEKLSGAALNYPTYDKEMYALVRSLETWQYYLWPKEFVIHI 3228
G+G+G VL+QEG+P+ YFSEKLSG +LNY TYDKE++ALVR+LETWQ+YLWPKEFVIH
Sbjct: 1049 SGIGLGGVLLQEGKPIEYFSEKLSGPSLNYSTYDKELFALVRTLETWQHYLWPKEFVIHS 1108
Query: 3229 DHESLKHLRGQHKLNKGRARWVEFFETFPYVIQYKQGKENIVADALSRRYILISTLDAKI 3408
DHESLKH+R Q KLN+ A+WVEF E+FPYVI++K+GKEN++ADALSRRY ++S LD KI
Sbjct: 1109 DHESLKHIRSQAKLNRRHAKWVEFIESFPYVIKHKKGKENVIADALSRRYAMLSQLDFKI 1168
Query: 3409 LGFEHIKELYPLDHDFNEEYESCEE-TTNGKYFRHEGFLFRENKLCIPNCSVRDLLVRES 3585
G E IKE Y D DF + +C+E T K+ GF+FR NKLCIP SVR LL++E+
Sbjct: 1169 FGLETIKEQYAHDDDFKDVLLNCKEGRTWNKFVLTNGFVFRANKLCIPASSVRMLLLQEA 1228
Query: 3586 HGGGLMGHFGVAKTLAILQEHFYWPHMKRDVERICGRCVTCRQAKSRVPPHGLYTPLPIP 3765
HGGGLMGHFGV KT IL +HF+WP M+RDVER RC TC++AK R+ PHGLY PLP+P
Sbjct: 1229 HGGGLMGHFGVKKTEDILADHFFWPKMRRDVERFVARCTTCQKAKLRLNPHGLYMPLPVP 1288
Query: 3766 STPWIDISMDFMLGLPRSKRGRDSVFVVVDRFSKMAHFIPCHNMNDASHVADLLGR 3933
S PW DISMDF+LGLPR+K+GRDS+FVVVDRFSKMAHFIPCH +DA+HVADL R
Sbjct: 1289 SVPWEDISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDATHVADLFFR 1344
Score = 169 bits (428), Expect(3) = 0.0
Identities = 91/196 (46%), Positives = 118/196 (60%), Gaps = 15/196 (7%)
Frame = +2
Query: 4172 AYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSERVNLDGKKKAEFVKQIHEKARLNI 4351
AYN + HS TK PFEIVY P P+DL PLP SERVN D K AE + ++HE + NI
Sbjct: 1426 AYNRSQHSTTKKCPFEIVYGLLPRAPIDLLPLPTSERVNFDAKYHAELMLKLHETTKENI 1485
Query: 4352 E*RTEQYAKQANKGRHKIVFEAEDWVWLHMRKERFPAQRRSKLLPRGDGPFQVLEHINDN 4531
E +Y +KG+ + FE D VWLH+RK+RFP R+SKLLPR DGPF+VL+ INDN
Sbjct: 1486 ERMNIKYKLAGSKGKKHVAFEPGDLVWLHLRKDRFPNLRKSKLLPRADGPFKVLQKINDN 1545
Query: 4532 AYKLDLPGEYNVSATFNVSDLSPFDVGDD---WRTNPFQEEGND------------ANHG 4666
YKL+LP ++ VS TFN++DL P+ +D RT QE +D A G
Sbjct: 1546 TYKLELPADFGVSPTFNIADLKPYLGEEDELESRTTQMQEGEDDEDIPSNDTTTPIAQQG 1605
Query: 4667 TVTRTQANKFKDALSG 4714
+TR +A + + G
Sbjct: 1606 PMTRARARELNYQVQG 1621
Score = 151 bits (382), Expect(3) = 0.0
Identities = 69/83 (83%), Positives = 75/83 (90%)
Frame = +3
Query: 3921 FVREIVRLHGMPRTIVPDRDAKFLSYFWKTLWCKLGTKLLFSTTCHPQTDGQMEVVNRTL 4100
F REIVRLHG+P TIV DRD KFLS+FW+TLW KLGTKLLFSTTCHPQTDGQ EVVNRTL
Sbjct: 1342 FFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRTL 1401
Query: 4101 STLLWAIIKKNIKTWEECLPHVE 4169
ST+L A++KKNIK WEECLPHVE
Sbjct: 1402 STMLRAVLKKNIKMWEECLPHVE 1424
Score = 191 bits (484), Expect(3) = e-102
Identities = 102/253 (40%), Positives = 145/253 (57%), Gaps = 13/253 (5%)
Frame = +2
Query: 1103 ATSHGNQGKSDSSTSRNHDIKCFKCQGRGHIASQCPNKRVMVLRXXXXXXXXXXXXXXFM 1282
A + S +S+ R DI+C +C+G GH+ CP+ RVM++R
Sbjct: 378 AATPSKSSSSVASSGRTRDIQCLRCKGYGHVRKDCPSTRVMIVRADGGYSSASDLDEETY 437
Query: 1283 PPLEDAN---------DKEY----AAQGGDLLVARRALSVQAKEDGEVQLENIFHTRCHV 1423
L N D+E+ AA+ + LV +R LS Q + + Q +F T+C +
Sbjct: 438 ALLATNNAGKGDAPHQDEEHIGAEAAEHYESLVVQRVLSAQMERAEQNQRHTLFQTKCVI 497
Query: 1424 QNKVCSVIIDGGSCTNVASTIMVEKLGLQTTKHPRPYKLQWLNDSGEVKVNKQVLVSFCI 1603
+ + C VIID GSC N+AS MVEKL L T HP+PY +QWLN SG+VKV + V V F I
Sbjct: 498 KERSCRVIIDRGSCNNLASAEMVEKLALSTQPHPQPYYIQWLNSSGKVKVTRLVRVHFAI 557
Query: 1604 GKYEDEVLCDVVPMQAGHLLLGRPWQFDRRVKHDGSTNKYSFVLNQRTITLVPLTPKQVH 1783
G Y D + CDVVPMQA + LGRPWQFD+ H G +N+YSFV N + + L P++P+ +
Sbjct: 558 GSYHDSINCDVVPMQACSIFLGRPWQFDKDSLHFGKSNQYSFVHNGKKLVLHPMSPEVIL 617
Query: 1784 EDQVILQKESEKK 1822
+D+ L + S++K
Sbjct: 618 KDE--LARASKQK 628
Score = 147 bits (372), Expect(3) = e-102
Identities = 76/195 (38%), Positives = 116/195 (59%)
Frame = +3
Query: 465 DNNLSSIKMKIPLFQGKNDPEAYLEWEKKVELVFDCHNYSENKKVKLAAIEFSDYAFVW* 644
D++L IK IP F K DP+AYL WE ++ F CH++ ENK+V+ A EF+D+A +W
Sbjct: 149 DDSLGKIKFTIPCFDEKYDPDAYLTWELAIDQKFACHDFPENKRVRAATSEFTDFASIWW 208
Query: 645 DQLVLNRRRNRERPIETWEEMKTVMRKRFVPSYYYRELYNKLQSLKQGNRSXXXXXXXXX 824
+ V R N +TW+ MK VMR RFVPSY+ R+L +KLQ L+QGN+S
Sbjct: 209 SEFV---RSNPNNTPQTWDAMKRVMRARFVPSYHARDLLHKLQQLRQGNKSVEEYYQALQ 265
Query: 825 XXXIRANVEEDREATMSRFLVGLNREIANAVELQHYVELEDMVHMAIKIENQLKRRGSTC 1004
+R + E+ +A M+RF+ GLNREI + + + Y + + H+A K E +++ R +
Sbjct: 266 TGMLRCGLVENDDAGMARFMGGLNREIQDILAYKEYNSINRLFHLACKAEREVQGRRA-- 323
Query: 1005 PSQNPSTSAWKSNHW 1049
S + SA +++ W
Sbjct: 324 -SFRTNISAGRASSW 337
Score = 86.3 bits (212), Expect(3) = e-102
Identities = 49/108 (45%), Positives = 60/108 (55%), Gaps = 3/108 (2%)
Frame = +3
Query: 1884 SANERKTERKTN---FYAKASEIKRAMFSNQPMIVLLYKEAYFNANQLNASLPSSVVSLL 2054
S K E K F A S++ L+ KE F SLP V +LL
Sbjct: 654 SVQNNKNEIKLKGSCFIATKSDLDEVDTDTVVCYALVCKETLFPIEDTPISLPPPVTNLL 713
Query: 2055 QDFDDIFPKEIPNGLPPIRGIEHQIDFVLGATIPN*PA*RSNPE*TKE 2198
Q++ DIFPKE+P GLPPIRGIEHQID + GA++PN R+NPE TKE
Sbjct: 714 QEYADIFPKEVPPGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKE 761
>gb|AAM94350.1| gag-pol polyprotein [Zea mays]
Length = 1618
Score = 826 bits (2133), Expect(3) = 0.0
Identities = 392/596 (65%), Positives = 482/596 (80%), Gaps = 1/596 (0%)
Frame = +1
Query: 2149 PFQTDQLKGVTPSRQRKVIELMEKGYVRENMSPCAVLVILVPKKDRLWRMCVDCRAINNI 2328
P++T+ + T QR+V EL++KGYVRE++SPCAV VILVPKKD WRMCVDCRAINNI
Sbjct: 726 PYRTNPEE--TKEIQRQVQELLDKGYVRESLSPCAVPVILVPKKDGTWRMCVDCRAINNI 783
Query: 2329 MVKYRHPIPRLDDMLDELHGSCVFSKIDLKSEYHRIRMKEGDEWKTKFKTKYGLYE*LVM 2508
++YRHPIPRLDDMLDEL G+ VFSK+DL+S YH+IRMK GDEWKT FKTK+GLYE LVM
Sbjct: 784 TIRYRHPIPRLDDMLDELSGAIVFSKVDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVM 843
Query: 2509 PFGLINATSTFMRLMNHVLRAFIENFVVIYFDDILIYSQNLDDHLMHLKLVLDVLRKEKL 2688
PFGL NA STFMRLMN VLRAFI FVV+YFDDILIYS+++D+H+ H++ V + LR +L
Sbjct: 844 PFGLTNAPSTFMRLMNEVLRAFIGKFVVVYFDDILIYSKSMDEHVDHMRAVFNALRDARL 903
Query: 2689 FANLKKCTFCTNKHVFLGFVTSTQGIQVDEEKIHAIQEWPSPTSVSNV*SFHGLASFYRR 2868
F NL+KCTFCT++ FLG+V + QGI+VD+ K+ AI WP P +++ V SF GLA FYRR
Sbjct: 904 FGNLEKCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIHGWPMPKTITQVRSFLGLAGFYRR 963
Query: 2869 FVKDFNSIAAPITKVIKKNAGFKWGEEQEKAFQLIKQKLTHAPLHALPNFAKAFEIDCDA 3048
FVKDF++IAAP+ ++ KK F WG+ QE AF ++K KLTHAPL LP+F K FE++CDA
Sbjct: 964 FVKDFSTIAAPLNELTKKGVHFSWGKVQEHAFNVLKDKLTHAPLLQLPDFNKTFELECDA 1023
Query: 3049 LGLGIGVVLIQEGRPLAYFSEKLSGAALNYPTYDKEMYALVRSLETWQYYLWPKEFVIHI 3228
G+G+G VL+QEG+P+AYFSEKLSG+ LNY TYDKE+YALVR+LETWQ+YLWPKEFVIH
Sbjct: 1024 SGIGLGGVLLQEGKPVAYFSEKLSGSVLNYSTYDKELYALVRTLETWQHYLWPKEFVIHS 1083
Query: 3229 DHESLKHLRGQHKLNKGRARWVEFFETFPYVIQYKQGKENIVADALSRRYILISTLDAKI 3408
DHESLKH+R Q KLN+ A+WVEF E+FPYVI++K+GKENI+ADALSRRY L++ LD KI
Sbjct: 1084 DHESLKHIRSQGKLNRRHAKWVEFIESFPYVIKHKKGKENIIADALSRRYTLLNQLDYKI 1143
Query: 3409 LGFEHIKELYPLDHDFNEEYESCEETTN-GKYFRHEGFLFRENKLCIPNCSVRDLLVRES 3585
G E IK+ Y D DF + C++ KY +GF+FR NKLCIP SVR LL++E+
Sbjct: 1144 FGLETIKDQYVHDADFKDVLLHCKDGKGWNKYIVSDGFVFRANKLCIPASSVRLLLLQEA 1203
Query: 3586 HGGGLMGHFGVAKTLAILQEHFYWPHMKRDVERICGRCVTCRQAKSRVPPHGLYTPLPIP 3765
HGGGLMGHFG KT IL HF+WP M+RDV R+ RC TC++AKSR+ PHGLY PLP+P
Sbjct: 1204 HGGGLMGHFGAKKTEDILAGHFFWPKMRRDVVRLVARCTTCQKAKSRLNPHGLYLPLPVP 1263
Query: 3766 STPWIDISMDFMLGLPRSKRGRDSVFVVVDRFSKMAHFIPCHNMNDASHVADLLGR 3933
S PW DISMDF+LGLPR+++GRDSVFVVVDRFSKMAHFIPCH +DA+H+ADL R
Sbjct: 1264 SAPWEDISMDFVLGLPRTRKGRDSVFVVVDRFSKMAHFIPCHKTDDATHIADLFFR 1319
Score = 177 bits (450), Expect(3) = 0.0
Identities = 94/213 (44%), Positives = 128/213 (60%), Gaps = 17/213 (7%)
Frame = +2
Query: 4172 AYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSERVNLDGKKKAEFVKQIHEKARLNI 4351
AYN ++HS TK PF+IVY P P+DL PLP SE++N D ++AE + ++HE + NI
Sbjct: 1401 AYNRSLHSTTKMCPFQIVYGLLPRAPIDLMPLPSSEKLNFDATRRAELMLKLHETTKENI 1460
Query: 4352 E*RTEQYAKQANKGRHKIVFEAEDWVWLHMRKERFPAQRRSKLLPRGDGPFQVLEHINDN 4531
E +Y ++KGR +I FE D VWLH+RKERFP R+SKLLPR DGPF+VLE INDN
Sbjct: 1461 ERMNARYKFASDKGRKEINFEPGDLVWLHLRKERFPELRKSKLLPRADGPFKVLEKINDN 1520
Query: 4532 AYKLDLPGEYNVSATFNVSDLSPF---DVGDDWRTNPFQEEGNDAN-------------- 4660
AY+LDLP ++ VS TFN++DL P+ +V + RT QE ND +
Sbjct: 1521 AYRLDLPADFGVSPTFNIADLKPYLGEEVELESRTTQMQEGENDEDIHTTDASIPIQVPI 1580
Query: 4661 HGTVTRTQANKFKDALSGLIQKVWNQTYMWSSV 4759
G +TR +A + + L+ + W V
Sbjct: 1581 SGPITRARARQLNHQVITLLSSCPSYLEPWRPV 1613
Score = 151 bits (382), Expect(3) = 0.0
Identities = 68/83 (81%), Positives = 76/83 (91%)
Frame = +3
Query: 3921 FVREIVRLHGMPRTIVPDRDAKFLSYFWKTLWCKLGTKLLFSTTCHPQTDGQMEVVNRTL 4100
F REIVRLHG+P TIV DRDAKFLS+FW+TLW KLGTKLLFSTTCHPQTDGQ EVVNRTL
Sbjct: 1317 FFREIVRLHGVPNTIVSDRDAKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRTL 1376
Query: 4101 STLLWAIIKKNIKTWEECLPHVE 4169
ST+L A++KKNIK WE+CLPH+E
Sbjct: 1377 STMLRAVLKKNIKMWEDCLPHIE 1399
Score = 197 bits (502), Expect(2) = 4e-87
Identities = 100/247 (40%), Positives = 144/247 (58%), Gaps = 10/247 (4%)
Frame = +2
Query: 1085 NRVKKEATSHGNQGKSDSSTSRNHDIKCFKCQGRGHIASQCPNKRVMVLRXXXXXXXXXX 1264
N K A S +ST R D+ C++C+G GH+ CPN+RV+V++
Sbjct: 367 NSATKSAQKPAGSASSVASTGRTRDVLCYRCKGYGHVQRDCPNQRVLVVKDDGGYSSASD 426
Query: 1265 XXXXFMPPL--EDANDKEYA--------AQGGDLLVARRALSVQAKEDGEVQLENIFHTR 1414
+ L +DA KE A+ + L+ +R LS Q ++ + Q +F T+
Sbjct: 427 LDEATLALLAADDAGTKEPPEEQIGADDAEHYESLIVQRVLSAQMEKAEQNQRHTLFQTK 486
Query: 1415 CHVQNKVCSVIIDGGSCTNVASTIMVEKLGLQTTKHPRPYKLQWLNDSGEVKVNKQVLVS 1594
C ++ + C +IIDGGSC N+AS+ MVEKL L T HP PY +QWLN+SG+VKV K V ++
Sbjct: 487 CVIKERSCRLIIDGGSCNNLASSDMVEKLALTTKPHPHPYHIQWLNNSGKVKVTKLVRIN 546
Query: 1595 FCIGKYEDEVLCDVVPMQAGHLLLGRPWQFDRRVKHDGSTNKYSFVLNQRTITLVPLTPK 1774
F IG Y D V CDVVPM A ++LLGRPWQFD H G +N+YS + + + I L+P++P+
Sbjct: 547 FAIGSYRDVVDCDVVPMDACNILLGRPWQFDSDCMHHGRSNQYSLIHHDKKIILLPMSPE 606
Query: 1775 QVHEDQV 1795
+ D V
Sbjct: 607 AIVRDDV 613
Score = 154 bits (390), Expect(2) = 4e-87
Identities = 78/197 (39%), Positives = 118/197 (59%)
Frame = +3
Query: 465 DNNLSSIKMKIPLFQGKNDPEAYLEWEKKVELVFDCHNYSENKKVKLAAIEFSDYAFVW* 644
D+ S +K KIP F GK DP+AY+ WE V+ F CH + EN +V+ A EF+++A VW
Sbjct: 141 DDAFSKVKFKIPPFDGKYDPDAYITWEIAVDQKFACHEFPENARVRAATSEFTEFASVW- 199
Query: 645 DQLVLNRRRNRERPIETWEEMKTVMRKRFVPSYYYRELYNKLQSLKQGNRSXXXXXXXXX 824
+ + ++N +TW+ +K VMR RFVPSYY R++ NKLQ L+QG +S
Sbjct: 200 --WIEHGKKNPNNMPQTWDALKRVMRARFVPSYYARDMLNKLQQLRQGTKSVEEYYQELQ 257
Query: 825 XXXIRANVEEDREATMSRFLVGLNREIANAVELQHYVELEDMVHMAIKIENQLKRRGSTC 1004
+R N+EE E+ M+RFL GLNREI + + + Y + + H+A K E +++ R ++
Sbjct: 258 MGMLRCNIEEGEESAMARFLGGLNREIQDILAYKDYANVTRLFHLACKAEREVQGRRASA 317
Query: 1005 PSQNPSTSAWKSNHWKK 1055
S + SA KS W++
Sbjct: 318 RS---NVSAGKSTPWQQ 331
Score = 85.1 bits (209), Expect = 3e-13
Identities = 40/91 (43%), Positives = 57/91 (62%)
Frame = +3
Query: 1926 AKASEIKRAMFSNQPMIVLLYKEAYFNANQLNASLPSSVVSLLQDFDDIFPKEIPNGLPP 2105
A +++ S L+ K+A + + SLP + ++LQ++ D+FP EIP GLPP
Sbjct: 646 ATKTDVNELFASTTVAYALVCKDALISIQDMQHSLPPVITNILQEYSDVFPSEIPEGLPP 705
Query: 2106 IRGIEHQIDFVLGATIPN*PA*RSNPE*TKE 2198
IRGIEHQID + GA++PN R+NPE TKE
Sbjct: 706 IRGIEHQIDLIPGASLPNRAPYRTNPEETKE 736
>gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|91795218|gb|ABE60890.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1616
Score = 826 bits (2133), Expect(3) = 0.0
Identities = 395/596 (66%), Positives = 479/596 (80%), Gaps = 1/596 (0%)
Frame = +1
Query: 2149 PFQTDQLKGVTPSRQRKVIELMEKGYVRENMSPCAVLVILVPKKDRLWRMCVDCRAINNI 2328
P++T+ + T QR+V EL++KGYVRE++SPC+V V+LVPKKD WRMCVDCRAINNI
Sbjct: 751 PYRTNPEE--TKEIQRQVQELLDKGYVRESLSPCSVPVLLVPKKDGSWRMCVDCRAINNI 808
Query: 2329 MVKYRHPIPRLDDMLDELHGSCVFSKIDLKSEYHRIRMKEGDEWKTKFKTKYGLYE*LVM 2508
++YRHPIPRLDDMLDEL GS VFSKIDL+S YH+IRMK GDEWKT FKTK+GLYE LVM
Sbjct: 809 TIRYRHPIPRLDDMLDELSGSLVFSKIDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVM 868
Query: 2509 PFGLINATSTFMRLMNHVLRAFIENFVVIYFDDILIYSQNLDDHLMHLKLVLDVLRKEKL 2688
PFGL NA STFMRLMN VLRAFI FVV+YFDDILIYS++++DH HL+ V D LR +L
Sbjct: 869 PFGLTNAPSTFMRLMNEVLRAFIGRFVVVYFDDILIYSRSIEDHHGHLRAVFDALRDARL 928
Query: 2689 FANLKKCTFCTNKHVFLGFVTSTQGIQVDEEKIHAIQEWPSPTSVSNV*SFHGLASFYRR 2868
F NL+KCTFCT++ FL +V + QGI+VD+ K+ AI WP PT+++ V SF GLA FYRR
Sbjct: 929 FGNLEKCTFCTDRVSFLSYVVTPQGIEVDQAKVEAIHNWPVPTTITQVRSFLGLAGFYRR 988
Query: 2869 FVKDFNSIAAPITKVIKKNAGFKWGEEQEKAFQLIKQKLTHAPLHALPNFAKAFEIDCDA 3048
FVKDF++IAAP+ ++ K+N F W Q AF +K KLTHAPL LP+F K FE +CDA
Sbjct: 989 FVKDFSTIAAPLHELTKRNVTFTWAAAQRNAFDTLKDKLTHAPLLQLPDFNKTFEHECDA 1048
Query: 3049 LGLGIGVVLIQEGRPLAYFSEKLSGAALNYPTYDKEMYALVRSLETWQYYLWPKEFVIHI 3228
G+G+G VL+QEG+P+AYFSEKLSG +LNY TYDKE++ALVR+LETWQ+YLWPKEFVIH
Sbjct: 1049 SGIGLGGVLLQEGKPVAYFSEKLSGPSLNYSTYDKELFALVRTLETWQHYLWPKEFVIHS 1108
Query: 3229 DHESLKHLRGQHKLNKGRARWVEFFETFPYVIQYKQGKENIVADALSRRYILISTLDAKI 3408
DHESLKH+R Q KLN+ A+WVEF E+FPYVI++K+GKEN++ADALSRRY ++S LD KI
Sbjct: 1109 DHESLKHIRSQAKLNRRHAKWVEFIESFPYVIKHKKGKENVIADALSRRYAMLSQLDFKI 1168
Query: 3409 LGFEHIKELYPLDHDFNEEYESCEE-TTNGKYFRHEGFLFRENKLCIPNCSVRDLLVRES 3585
G E IKE Y D DF +C+E T K+ GF+FR NKLCIP SVR LL++E+
Sbjct: 1169 FGLETIKEQYAHDDDFKNVLLNCKEGRTWNKFVLTNGFVFRANKLCIPASSVRMLLLQEA 1228
Query: 3586 HGGGLMGHFGVAKTLAILQEHFYWPHMKRDVERICGRCVTCRQAKSRVPPHGLYTPLPIP 3765
HGGGLMGHFGV KT IL +HF+WP M+RDVER RC TC++AKSR+ PHGLY PLP+P
Sbjct: 1229 HGGGLMGHFGVKKTEDILADHFFWPKMRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVP 1288
Query: 3766 STPWIDISMDFMLGLPRSKRGRDSVFVVVDRFSKMAHFIPCHNMNDASHVADLLGR 3933
S PW DISMDF+LGLPR+K+GRDS+FVVVDRFSKMAHFIPCH +DA+HVADL R
Sbjct: 1289 SVPWEDISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDATHVADLFFR 1344
Score = 168 bits (426), Expect(3) = 0.0
Identities = 90/189 (47%), Positives = 118/189 (62%), Gaps = 15/189 (7%)
Frame = +2
Query: 4172 AYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSERVNLDGKKKAEFVKQIHEKARLNI 4351
AYN + HS TK PFEIVY P P+DL P P SERVN D K +AE + ++HE + NI
Sbjct: 1426 AYNRSQHSTTKKCPFEIVYGLLPRAPIDLLPHPTSERVNFDAKYRAELMLKLHETTKENI 1485
Query: 4352 E*RTEQYAKQANKGRHKIVFEAEDWVWLHMRKERFPAQRRSKLLPRGDGPFQVLEHINDN 4531
E +Y +KG+ + FE D VWLH+RK+RFP R+SKLLPR DGPF+VL+ INDN
Sbjct: 1486 ERMNIKYKLAGSKGKKHVAFEPGDLVWLHLRKDRFPNLRKSKLLPRADGPFKVLQKINDN 1545
Query: 4532 AYKLDLPGEYNVSATFNVSDLSPFDVGDD---WRTNPFQEEGND------------ANHG 4666
AYKL+LP ++ VS TFN++DL P+ +D RT QE +D A G
Sbjct: 1546 AYKLELPADFGVSPTFNIADLKPYLGEEDELESRTTQMQEGEDDEDIPSNDTSTPIAQQG 1605
Query: 4667 TVTRTQANK 4693
+TR +A++
Sbjct: 1606 PMTRARAHE 1614
Score = 150 bits (378), Expect(3) = 0.0
Identities = 68/83 (81%), Positives = 74/83 (89%)
Frame = +3
Query: 3921 FVREIVRLHGMPRTIVPDRDAKFLSYFWKTLWCKLGTKLLFSTTCHPQTDGQMEVVNRTL 4100
F REIVRLHG+P TIV DRD KFLS+FW+TLW KLGTK LFSTTCHPQTDGQ EVVNRTL
Sbjct: 1342 FFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKFLFSTTCHPQTDGQTEVVNRTL 1401
Query: 4101 STLLWAIIKKNIKTWEECLPHVE 4169
ST+L A++KKNIK WEECLPHVE
Sbjct: 1402 STMLRAVLKKNIKMWEECLPHVE 1424
Score = 195 bits (495), Expect(3) = e-104
Identities = 103/253 (40%), Positives = 145/253 (57%), Gaps = 13/253 (5%)
Frame = +2
Query: 1103 ATSHGNQGKSDSSTSRNHDIKCFKCQGRGHIASQCPNKRVMVLRXXXXXXXXXXXXXXFM 1282
A + S +S+ R DI+C +C+G GH+ CP+ RVM++R
Sbjct: 378 AATPSKTSSSVASSGRTRDIQCLRCKGYGHVRKDCPSTRVMIVRADGGYSSASDLDGETY 437
Query: 1283 PPLEDANDKE-------------YAAQGGDLLVARRALSVQAKEDGEVQLENIFHTRCHV 1423
L N +E AA+ + LV +R LS Q + + Q +F T+C +
Sbjct: 438 ALLATNNAREGDAPHQDEEHIGAEAAEHYESLVVQRVLSAQMERAEQNQRHTLFQTKCVI 497
Query: 1424 QNKVCSVIIDGGSCTNVASTIMVEKLGLQTTKHPRPYKLQWLNDSGEVKVNKQVLVSFCI 1603
+ + C VIIDGGSC N+AS MVEKL L T HP+PY +QWLN SG+VKV + V V F I
Sbjct: 498 KERSCRVIIDGGSCNNLASAEMVEKLALSTQPHPQPYYIQWLNSSGKVKVTRLVRVHFAI 557
Query: 1604 GKYEDEVLCDVVPMQAGHLLLGRPWQFDRRVKHDGSTNKYSFVLNQRTITLVPLTPKQVH 1783
G Y D + CDVVPMQA +LLGRPWQFD+ H G +N+YSFV N + + L P++P+ +
Sbjct: 558 GSYHDSINCDVVPMQACSMLLGRPWQFDKDSLHFGKSNQYSFVHNGKKLVLHPMSPEVIL 617
Query: 1784 EDQVILQKESEKK 1822
+D+ L + S++K
Sbjct: 618 KDE--LARASKQK 628
Score = 149 bits (376), Expect(3) = e-104
Identities = 77/195 (39%), Positives = 116/195 (59%)
Frame = +3
Query: 465 DNNLSSIKMKIPLFQGKNDPEAYLEWEKKVELVFDCHNYSENKKVKLAAIEFSDYAFVW* 644
D++L IK IP F GK DP+AYL WE ++ F CH++ ENK V+ A EF+D+A +W
Sbjct: 149 DDSLGKIKFTIPCFDGKYDPDAYLTWELAIDQKFACHDFPENKCVRAATSEFTDFASIWW 208
Query: 645 DQLVLNRRRNRERPIETWEEMKTVMRKRFVPSYYYRELYNKLQSLKQGNRSXXXXXXXXX 824
+ V R N +TW+ MK VMR RFVPSY+ R+L +KLQ L+QGN+S
Sbjct: 209 SEFV---RSNPNNTPQTWDAMKRVMRARFVPSYHARDLLHKLQQLRQGNKSVEEYYQALQ 265
Query: 825 XXXIRANVEEDREATMSRFLVGLNREIANAVELQHYVELEDMVHMAIKIENQLKRRGSTC 1004
+R + E+ +A M+RF+ GLNREI + + + Y + + H+A K E +++ R +
Sbjct: 266 TGMLRCGLVENDDAGMARFMGGLNREIQDILTYKEYNSINHLFHLACKAEREVQGRRA-- 323
Query: 1005 PSQNPSTSAWKSNHW 1049
S + SA +++ W
Sbjct: 324 -SFRTNISAGRASSW 337
Score = 86.3 bits (212), Expect(3) = e-104
Identities = 49/108 (45%), Positives = 60/108 (55%), Gaps = 3/108 (2%)
Frame = +3
Query: 1884 SANERKTERKTN---FYAKASEIKRAMFSNQPMIVLLYKEAYFNANQLNASLPSSVVSLL 2054
S K E K F A S++ L+ KE F SLP V +LL
Sbjct: 654 SVQNNKNEIKLKGSCFIATKSDLDEVDTDTVVCYALVCKETLFPIEDTPISLPPPVTNLL 713
Query: 2055 QDFDDIFPKEIPNGLPPIRGIEHQIDFVLGATIPN*PA*RSNPE*TKE 2198
Q++ DIFPKE+P GLPPIRGIEHQID + GA++PN R+NPE TKE
Sbjct: 714 QEYADIFPKEVPPGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKE 761
>dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]
Length = 1587
Score = 822 bits (2122), Expect(3) = 0.0
Identities = 392/596 (65%), Positives = 478/596 (80%), Gaps = 1/596 (0%)
Frame = +1
Query: 2149 PFQTDQLKGVTPSRQRKVIELMEKGYVRENMSPCAVLVILVPKKDRLWRMCVDCRAINNI 2328
P++T+ + T QR+V EL++KGYVRE++SPC+V V+LVPKKD WRMCVDCRAINNI
Sbjct: 751 PYRTNPEE--TKEIQRQVQELLDKGYVRESLSPCSVPVLLVPKKDGSWRMCVDCRAINNI 808
Query: 2329 MVKYRHPIPRLDDMLDELHGSCVFSKIDLKSEYHRIRMKEGDEWKTKFKTKYGLYE*LVM 2508
++YRHPIPRLDDMLDEL GS VFSKIDL+S YH+IRMK GDEWKT FKTK+GLYE LVM
Sbjct: 809 TIRYRHPIPRLDDMLDELSGSLVFSKIDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVM 868
Query: 2509 PFGLINATSTFMRLMNHVLRAFIENFVVIYFDDILIYSQNLDDHLMHLKLVLDVLRKEKL 2688
PFGL NA STFMRLMN VLRAFI FVV+YFDDILIYS++++DH HL+ V D LR +L
Sbjct: 869 PFGLTNAPSTFMRLMNEVLRAFIGRFVVVYFDDILIYSRSIEDHHGHLRAVFDALRDARL 928
Query: 2689 FANLKKCTFCTNKHVFLGFVTSTQGIQVDEEKIHAIQEWPSPTSVSNV*SFHGLASFYRR 2868
F NL+KCTFCT++ FLG+V + QGI+VD+ K+ AI WP PT+++ V SF GLA FYRR
Sbjct: 929 FGNLEKCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIHSWPVPTTITQVRSFLGLAGFYRR 988
Query: 2869 FVKDFNSIAAPITKVIKKNAGFKWGEEQEKAFQLIKQKLTHAPLHALPNFAKAFEIDCDA 3048
FVKDF++IAAP+ ++ K+N F W Q AF +K KLTHAPL LP+F K FE++CDA
Sbjct: 989 FVKDFSTIAAPLHELTKRNVTFTWAAAQRNAFDTLKDKLTHAPLLQLPDFNKTFELECDA 1048
Query: 3049 LGLGIGVVLIQEGRPLAYFSEKLSGAALNYPTYDKEMYALVRSLETWQYYLWPKEFVIHI 3228
G+G+G VL+QEG+P+AYFSEKLSG +LNY TYDKE++ALVR+LETWQ+YLWPKEFVIH
Sbjct: 1049 SGIGLGGVLLQEGKPVAYFSEKLSGPSLNYSTYDKELFALVRTLETWQHYLWPKEFVIHS 1108
Query: 3229 DHESLKHLRGQHKLNKGRARWVEFFETFPYVIQYKQGKENIVADALSRRYILISTLDAKI 3408
DHESLKH+R Q K N+ A+WVEF E+FPYVI++K+GKEN++ADALSRRY ++S LD KI
Sbjct: 1109 DHESLKHIRSQAKHNRRHAKWVEFIESFPYVIKHKKGKENVIADALSRRYAMLSQLDFKI 1168
Query: 3409 LGFEHIKELYPLDHDFNEEYESCEE-TTNGKYFRHEGFLFRENKLCIPNCSVRDLLVRES 3585
G E IKE Y D DF + +C+E T K+ GF+FR NKLCIP SV LL++E+
Sbjct: 1169 FGLETIKEQYAHDDDFKDVLLNCKEGRTWNKFVLTNGFVFRANKLCIPASSVHMLLLQEA 1228
Query: 3586 HGGGLMGHFGVAKTLAILQEHFYWPHMKRDVERICGRCVTCRQAKSRVPPHGLYTPLPIP 3765
HGGGLMGHFGV K IL +HF+WP +RDVER RC TC++AKSR+ PHGLY PLP+P
Sbjct: 1229 HGGGLMGHFGVKKMEDILADHFFWPKKRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVP 1288
Query: 3766 STPWIDISMDFMLGLPRSKRGRDSVFVVVDRFSKMAHFIPCHNMNDASHVADLLGR 3933
S PW DISMDF+LGLPR+K+GRDS+FVVVDRFSKMAHFIPCH +DA+HVADL R
Sbjct: 1289 SVPWEDISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDATHVADLFFR 1344
Score = 168 bits (426), Expect(3) = 0.0
Identities = 85/160 (53%), Positives = 108/160 (67%), Gaps = 3/160 (1%)
Frame = +2
Query: 4172 AYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSERVNLDGKKKAEFVKQIHEKARLNI 4351
AYN + HS TK PFEIVY P P+DL PLP SERVN D K +AE + ++HE + NI
Sbjct: 1426 AYNRSQHSTTKKCPFEIVYGLLPRAPIDLLPLPTSERVNFDAKYRAELMLKLHETTKENI 1485
Query: 4352 E*RTEQYAKQANKGRHKIVFEAEDWVWLHMRKERFPAQRRSKLLPRGDGPFQVLEHINDN 4531
E +Y +KG+ + FE D VWLH+RK+RFP R+SKLLPR DGPF+VL+ INDN
Sbjct: 1486 ERMNIKYKLAGSKGKKHVAFEPGDLVWLHLRKDRFPNLRKSKLLPRADGPFKVLQKINDN 1545
Query: 4532 AYKLDLPGEYNVSATFNVSDLSPFDVGDD---WRTNPFQE 4642
AYKL+LP ++ VS TFN++DL P+ +D RT QE
Sbjct: 1546 AYKLELPADFGVSPTFNIADLKPYLGEEDELESRTTQMQE 1585
Score = 151 bits (382), Expect(3) = 0.0
Identities = 69/83 (83%), Positives = 75/83 (90%)
Frame = +3
Query: 3921 FVREIVRLHGMPRTIVPDRDAKFLSYFWKTLWCKLGTKLLFSTTCHPQTDGQMEVVNRTL 4100
F REIVRLHG+P TIV DRD KFLS+FW+TLW KLGTKLLFSTTCHPQTDGQ EVVNRTL
Sbjct: 1342 FFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRTL 1401
Query: 4101 STLLWAIIKKNIKTWEECLPHVE 4169
ST+L A++KKNIK WEECLPHVE
Sbjct: 1402 STMLRAVLKKNIKMWEECLPHVE 1424
Score = 197 bits (502), Expect(3) = e-103
Identities = 105/253 (41%), Positives = 148/253 (58%), Gaps = 13/253 (5%)
Frame = +2
Query: 1103 ATSHGNQGKSDSSTSRNHDIKCFKCQGRGHIASQCPNKRVMVLRXXXXXXXXXXXXXXFM 1282
A + S +S+ R DI+C +C+G GH+ CP+ RVM++R
Sbjct: 378 AATPSKSSSSVASSGRTRDIQCLRCKGYGHVRKDCPSTRVMIVRADGGYYFDSDLDEETY 437
Query: 1283 PPLEDAN---------DKEY----AAQGGDLLVARRALSVQAKEDGEVQLENIFHTRCHV 1423
L N D+E+ AA+ + LV +R LS Q + + QL +F T+C +
Sbjct: 438 ALLATNNAGEGDAPHQDEEHIRAEAAEHYESLVVQRVLSAQMERAEQNQLHTLFQTKCVI 497
Query: 1424 QNKVCSVIIDGGSCTNVASTIMVEKLGLQTTKHPRPYKLQWLNDSGEVKVNKQVLVSFCI 1603
+ + C VIIDGGSC N+AS MVEKL L T HP+PY +QWLN SG+VKV + V V F I
Sbjct: 498 KERSCHVIIDGGSCNNLASAEMVEKLALSTQPHPQPYYIQWLNSSGKVKVTRLVRVHFAI 557
Query: 1604 GKYEDEVLCDVVPMQAGHLLLGRPWQFDRRVKHDGSTNKYSFVLNQRTITLVPLTPKQVH 1783
G Y D + CDVVPMQA +LLGRPWQFD+ H G +N+YSFV N + + L P++P+ +
Sbjct: 558 GSYHDSINCDVVPMQACSMLLGRPWQFDKDSLHFGKSNQYSFVHNGKKLVLHPMSPEVIL 617
Query: 1784 EDQVILQKESEKK 1822
+D+ L + S++K
Sbjct: 618 KDE--LARASKQK 628
Score = 148 bits (373), Expect(3) = e-103
Identities = 76/196 (38%), Positives = 117/196 (59%), Gaps = 2/196 (1%)
Frame = +3
Query: 465 DNNLSSIKMKIPLFQGKNDPEAYLEWEKKVELVFDCHNYSENKKVKLAAIEFSDYAFVW* 644
D++L IK IP F GK DP+AYL WE + F CH++ ENK+V+ A EF+D+A +W
Sbjct: 149 DDSLGKIKFTIPCFDGKYDPDAYLTWELAIVQKFACHDFPENKRVRAATSEFTDFASIWW 208
Query: 645 DQLVLNRRRNRERPIETWEEMKTVMRKRFVPSYYYRELYNKLQSLKQGNRSXXXXXXXXX 824
+ V R N +TW+ MK VMR RFVPSY+ R+L +KLQ L+QGN+S
Sbjct: 209 SEFV---RSNPNNTPQTWDAMKRVMRARFVPSYHARDLLHKLQQLRQGNKSVEEYYQALQ 265
Query: 825 XXXIRANVEEDREATMSRFLVGLNREIANAVELQHYVELEDMVHMAIKIENQLKRRGSTC 1004
+R + E+ +A M+RF+ GLNREI + + + Y + + H+A K E +++ R ++
Sbjct: 266 IGMLRCGLVENDDAGMARFMGGLNREIQDILAYKEYNSINRLFHLACKAEREVQGRRASF 325
Query: 1005 PSQNPS--TSAWKSNH 1046
+ + S+W S++
Sbjct: 326 RTNISAGCASSWTSSN 341
Score = 82.0 bits (201), Expect(3) = e-103
Identities = 48/108 (44%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Frame = +3
Query: 1884 SANERKTERKTN---FYAKASEIKRAMFSNQPMIVLLYKEAYFNANQLNASLPSSVVSLL 2054
S K E K F A S++ L+ KE F SL V +LL
Sbjct: 654 SVQNNKNEIKLKGSCFIATKSDLDEVDTDTVFCYALVCKETLFPIEDTPISLRPPVTNLL 713
Query: 2055 QDFDDIFPKEIPNGLPPIRGIEHQIDFVLGATIPN*PA*RSNPE*TKE 2198
Q++ DIFPKE+P GLPPIRGIEHQID + GA++PN R+NPE TKE
Sbjct: 714 QEYADIFPKEVPPGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKE 761
>gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 1619
Score = 819 bits (2116), Expect(3) = 0.0
Identities = 391/596 (65%), Positives = 477/596 (80%), Gaps = 1/596 (0%)
Frame = +1
Query: 2149 PFQTDQLKGVTPSRQRKVIELMEKGYVRENMSPCAVLVILVPKKDRLWRMCVDCRAINNI 2328
P++T+ + T QR+V EL++KGYVRE++SPC+V V+LVPKKD WRMCVDCRAINNI
Sbjct: 647 PYRTNPEE--TKEIQRQVQELLDKGYVRESLSPCSVPVLLVPKKDGSWRMCVDCRAINNI 704
Query: 2329 MVKYRHPIPRLDDMLDELHGSCVFSKIDLKSEYHRIRMKEGDEWKTKFKTKYGLYE*LVM 2508
++YRHPIPRLDDMLDEL GS VFSKIDL S YH+IRMK GDEWKT FKTK+GLYE LVM
Sbjct: 705 TIRYRHPIPRLDDMLDELSGSLVFSKIDLCSGYHQIRMKLGDEWKTAFKTKFGLYEWLVM 764
Query: 2509 PFGLINATSTFMRLMNHVLRAFIENFVVIYFDDILIYSQNLDDHLMHLKLVLDVLRKEKL 2688
PFGL NA STFMRLMN VLRAFI FVV+YFDDILIYS++++DH HL+ V D LR +L
Sbjct: 765 PFGLTNAPSTFMRLMNEVLRAFIGRFVVVYFDDILIYSRSIEDHHGHLRAVFDALRDARL 824
Query: 2689 FANLKKCTFCTNKHVFLGFVTSTQGIQVDEEKIHAIQEWPSPTSVSNV*SFHGLASFYRR 2868
F NL+KCTFCT++ FLG+V + QGI+VD+ K+ AI WP PT+++ V SF GLA FYR
Sbjct: 825 FGNLEKCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIHSWPVPTTITQVRSFLGLAGFYRL 884
Query: 2869 FVKDFNSIAAPITKVIKKNAGFKWGEEQEKAFQLIKQKLTHAPLHALPNFAKAFEIDCDA 3048
FVKDF++IAAP+ ++ K+N F W Q AF +K KLTHAPL LP+F K FE++CDA
Sbjct: 885 FVKDFSTIAAPLHELTKRNVTFTWAAAQRNAFDTLKDKLTHAPLLQLPDFNKTFELECDA 944
Query: 3049 LGLGIGVVLIQEGRPLAYFSEKLSGAALNYPTYDKEMYALVRSLETWQYYLWPKEFVIHI 3228
G+G+G VL+QEG+P+AYFSEKLSG +LNY TYDK+++ALVR+LETWQ+YLWPKEFVIH
Sbjct: 945 SGIGLGGVLLQEGKPVAYFSEKLSGPSLNYSTYDKQLFALVRTLETWQHYLWPKEFVIHS 1004
Query: 3229 DHESLKHLRGQHKLNKGRARWVEFFETFPYVIQYKQGKENIVADALSRRYILISTLDAKI 3408
DHESLKH+R Q KLN+ A+WVEF E+FPYVI++K+GKEN++ DALSRRY ++S LD KI
Sbjct: 1005 DHESLKHIRSQAKLNRRHAKWVEFIESFPYVIKHKKGKENVIVDALSRRYAMLSQLDFKI 1064
Query: 3409 LGFEHIKELYPLDHDFNEEYESCEE-TTNGKYFRHEGFLFRENKLCIPNCSVRDLLVRES 3585
G E IKE Y D DF + +C+E T K+ GF+FR NKLCIP SV LL++E+
Sbjct: 1065 FGLETIKEQYAHDDDFKDVLLNCKEGRTWNKFVLTNGFVFRANKLCIPASSVHMLLLQEA 1124
Query: 3586 HGGGLMGHFGVAKTLAILQEHFYWPHMKRDVERICGRCVTCRQAKSRVPPHGLYTPLPIP 3765
HGGGLMGHFGV KT IL +H +WP M+RDVER RC TC++AKSR+ PHGLY PLP+P
Sbjct: 1125 HGGGLMGHFGVKKTEDILADHLFWPKMRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVP 1184
Query: 3766 STPWIDISMDFMLGLPRSKRGRDSVFVVVDRFSKMAHFIPCHNMNDASHVADLLGR 3933
S PW DISMDF+LGLPR+K+GRDS+FVVVDRFSKMAHFIPCH +DA+HVADL R
Sbjct: 1185 SVPWEDISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDATHVADLFFR 1240
Score = 167 bits (423), Expect(3) = 0.0
Identities = 90/189 (47%), Positives = 116/189 (61%), Gaps = 15/189 (7%)
Frame = +2
Query: 4172 AYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSERVNLDGKKKAEFVKQIHEKARLNI 4351
AYN + HS TK PFEIVY P P+DL PLP ERVN D K +AE + ++HE + NI
Sbjct: 1322 AYNRSQHSTTKKCPFEIVYGLLPRAPIDLLPLPTLERVNFDAKYRAELMLKLHETTKENI 1381
Query: 4352 E*RTEQYAKQANKGRHKIVFEAEDWVWLHMRKERFPAQRRSKLLPRGDGPFQVLEHINDN 4531
E +Y +KG+ + FE D VWLH+RK+RFP R+SKL PR DGPFQVL+ INDN
Sbjct: 1382 ERMNIKYKLAGSKGKKHVAFEPGDLVWLHLRKDRFPNLRKSKLPPRADGPFQVLQKINDN 1441
Query: 4532 AYKLDLPGEYNVSATFNVSDLSPFDVGDD---WRTNPFQEEGND------------ANHG 4666
AYKL+LP ++ VS TFN++DL P+ +D RT QE +D A G
Sbjct: 1442 AYKLELPADFGVSPTFNIADLKPYLGEEDELESRTTQMQEGEDDEDIPSNDTTTPIAQQG 1501
Query: 4667 TVTRTQANK 4693
+TR +A +
Sbjct: 1502 PMTRARARE 1510
Score = 150 bits (379), Expect(3) = 0.0
Identities = 68/83 (81%), Positives = 75/83 (90%)
Frame = +3
Query: 3921 FVREIVRLHGMPRTIVPDRDAKFLSYFWKTLWCKLGTKLLFSTTCHPQTDGQMEVVNRTL 4100
F REIVRLHG+P TIV DRD KFLS+FW+TLW KLGTKLLFSTTCHPQTDGQ EVVNRT+
Sbjct: 1238 FFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRTV 1297
Query: 4101 STLLWAIIKKNIKTWEECLPHVE 4169
ST+L A++KKNIK WEECLPHVE
Sbjct: 1298 STMLRAVLKKNIKMWEECLPHVE 1320
Score = 145 bits (367), Expect(2) = 1e-59
Identities = 72/176 (40%), Positives = 107/176 (60%)
Frame = +3
Query: 465 DNNLSSIKMKIPLFQGKNDPEAYLEWEKKVELVFDCHNYSENKKVKLAAIEFSDYAFVW* 644
D++L IK IP F GK DP+AYL WE ++ F CH++ ENK+V+ A EF+D+A +W
Sbjct: 149 DDSLGKIKFTIPCFDGKYDPDAYLTWELAIDQKFACHDFPENKRVRAATSEFTDFASIWW 208
Query: 645 DQLVLNRRRNRERPIETWEEMKTVMRKRFVPSYYYRELYNKLQSLKQGNRSXXXXXXXXX 824
+ V R N +TW+ MK VMR RFVPSY+ R+L +KLQ L+QGN+S
Sbjct: 209 SEFV---RSNPNNTPQTWDAMKRVMRARFVPSYHARDLLHKLQQLRQGNKSVEEYYQALQ 265
Query: 825 XXXIRANVEEDREATMSRFLVGLNREIANAVELQHYVELEDMVHMAIKIENQLKRR 992
+R + E+ +A M+RF+ LNREI + + + Y + + H+A K E +++ R
Sbjct: 266 IGMLRCGLVENDDAGMARFMGELNREIQDILAYKEYNSINRLFHLACKAEREVQGR 321
Score = 115 bits (288), Expect(2) = 1e-59
Identities = 61/177 (34%), Positives = 90/177 (50%), Gaps = 13/177 (7%)
Frame = +2
Query: 1103 ATSHGNQGKSDSSTSRNHDIKCFKCQGRGHIASQCPNKRVMVLRXXXXXXXXXXXXXXF- 1279
A + S +S R DI+C +C+G GH+ CP+ RVM++R
Sbjct: 360 AATPSKSSSSVASLGRTRDIQCLRCKGYGHVRKDCPSTRVMIVRADGGYSSASDLDEETY 419
Query: 1280 ------------MPPLEDANDKEYAAQGGDLLVARRALSVQAKEDGEVQLENIFHTRCHV 1423
P ++ + K AA+ + LV +R LS Q + + Q +F T+C +
Sbjct: 420 ALLATNNAGEGDAPHQDEEHIKAEAAEHYESLVVQRVLSAQMERAEQNQRHTLFQTKCVI 479
Query: 1424 QNKVCSVIIDGGSCTNVASTIMVEKLGLQTTKHPRPYKLQWLNDSGEVKVNKQVLVS 1594
+ + C VIIDGGSC N+AS MVEKL L T HP+PY +QWLN SG+ + L++
Sbjct: 480 KERSCRVIIDGGSCNNLASAEMVEKLALSTQPHPQPYYIQWLNSSGKEHTRSEHLIA 536
Score = 86.3 bits (212), Expect = 1e-13
Identities = 49/108 (45%), Positives = 60/108 (55%), Gaps = 3/108 (2%)
Frame = +3
Query: 1884 SANERKTERKTN---FYAKASEIKRAMFSNQPMIVLLYKEAYFNANQLNASLPSSVVSLL 2054
S K E K F A S++ L+ KE F SLP V +LL
Sbjct: 550 SVQNNKNEIKLKGSCFIATKSDLDEVDTDTVVCYALVCKETLFPIEDTPISLPPPVTNLL 609
Query: 2055 QDFDDIFPKEIPNGLPPIRGIEHQIDFVLGATIPN*PA*RSNPE*TKE 2198
Q++ DIFPKE+P GLPPIRGIEHQID + GA++PN R+NPE TKE
Sbjct: 610 QEYADIFPKEVPPGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKE 657
>gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum subsp.
aegilopoides]
Length = 1704
Score = 818 bits (2113), Expect(3) = 0.0
Identities = 390/596 (65%), Positives = 482/596 (80%), Gaps = 1/596 (0%)
Frame = +1
Query: 2149 PFQTDQLKGVTPSRQRKVIELMEKGYVRENMSPCAVLVILVPKKDRLWRMCVDCRAINNI 2328
P++T+ + T R+V EL++KGY+RE++SPCAV +ILVPKKD RMCVDCR INNI
Sbjct: 767 PYRTNPEE--TKEIMRQVQELLDKGYIRESLSPCAVPIILVPKKDGTSRMCVDCRGINNI 824
Query: 2329 MVKYRHPIPRLDDMLDELHGSCVFSKIDLKSEYHRIRMKEGDEWKTKFKTKYGLYE*LVM 2508
++YRHPIPRLDDMLDEL GS +FSK+DL+S YH+IRMK GDEWKT FKTK+GLYE LVM
Sbjct: 825 TIRYRHPIPRLDDMLDELSGSTIFSKVDLRSGYHQIRMKLGDEWKTTFKTKFGLYEWLVM 884
Query: 2509 PFGLINATSTFMRLMNHVLRAFIENFVVIYFDDILIYSQNLDDHLMHLKLVLDVLRKEKL 2688
PFGL NA STFMRLMN VLRAFI FVV+YFDDILIYS++L++HL HL+ V LR +L
Sbjct: 885 PFGLTNAPSTFMRLMNEVLRAFIGRFVVVYFDDILIYSKSLEEHLEHLRAVFIALRDARL 944
Query: 2689 FANLKKCTFCTNKHVFLGFVTSTQGIQVDEEKIHAIQEWPSPTSVSNV*SFHGLASFYRR 2868
F NL KCTFCT++ FLG+V + QGI+VD+ KI AI+ WP P +V+ V SF GLA FYRR
Sbjct: 945 FGNLGKCTFCTDRVSFLGYVVTPQGIEVDKAKIEAIESWPHPKTVTQVRSFLGLAGFYRR 1004
Query: 2869 FVKDFNSIAAPITKVIKKNAGFKWGEEQEKAFQLIKQKLTHAPLHALPNFAKAFEIDCDA 3048
FV+DF++IAAP+ +V KK+ F WG QE+AF ++K KLT+APL LPNF K FE++CDA
Sbjct: 1005 FVRDFSTIAAPLNEVTKKDVPFVWGTAQEEAFTVLKDKLTYAPLLQLPNFNKTFELECDA 1064
Query: 3049 LGLGIGVVLIQEGRPLAYFSEKLSGAALNYPTYDKEMYALVRSLETWQYYLWPKEFVIHI 3228
G+G+G VL+Q+G+P+AYFSEK SG +LNY TYDKE+YALVR+LETWQ+YLWPKEFVIH
Sbjct: 1065 SGIGLGGVLLQDGKPVAYFSEKFSGPSLNYSTYDKELYALVRTLETWQHYLWPKEFVIHS 1124
Query: 3229 DHESLKHLRGQHKLNKGRARWVEFFETFPYVIQYKQGKENIVADALSRRYILISTLDAKI 3408
DHESLKH++ Q KLN+ A+WVEF ETFPYVI++K+GKEN++ADALSRRY ++S LD KI
Sbjct: 1125 DHESLKHIKSQAKLNRRHAKWVEFIETFPYVIKHKKGKENVIADALSRRYTMLSQLDFKI 1184
Query: 3409 LGFEHIKELYPLDHDFNEEYESCEE-TTNGKYFRHEGFLFRENKLCIPNCSVRDLLVRES 3585
G E IK+ Y D +F + ++C+E T K+ ++GF+FR NKLCIP SVR LL++E+
Sbjct: 1185 FGLETIKDQYVHDAEFKDVLQNCKEGRTWNKFVLNDGFVFRANKLCIPASSVRLLLLQEA 1244
Query: 3586 HGGGLMGHFGVAKTLAILQEHFYWPHMKRDVERICGRCVTCRQAKSRVPPHGLYTPLPIP 3765
HGGGLMGHFGV KT IL HF+WP M+RDVER RC TC++AKSR+ PHGLY PLP+P
Sbjct: 1245 HGGGLMGHFGVKKTEDILATHFFWPKMRRDVERFVARCTTCQRAKSRLNPHGLYMPLPVP 1304
Query: 3766 STPWIDISMDFMLGLPRSKRGRDSVFVVVDRFSKMAHFIPCHNMNDASHVADLLGR 3933
S PW DISMDF+LGLPR+K+GRDS+FVVVDRFSKMAHFIPCH +DA +VADL R
Sbjct: 1305 SVPWEDISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDAVNVADLFFR 1360
Score = 181 bits (458), Expect(3) = 0.0
Identities = 90/175 (51%), Positives = 118/175 (67%), Gaps = 3/175 (1%)
Frame = +2
Query: 4172 AYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSERVNLDGKKKAEFVKQIHEKARLNI 4351
AYN ++HS TK PFEIVY F P P+DL PLP SE+VN D K+++E + +IHE + NI
Sbjct: 1442 AYNRSLHSTTKMCPFEIVYGFLPRAPIDLLPLPSSEKVNFDAKERSELILKIHELTKENI 1501
Query: 4352 E*RTEQYAKQANKGRHKIVFEAEDWVWLHMRKERFPAQRRSKLLPRGDGPFQVLEHINDN 4531
E +Y +KGR +VF D VWLH+RK+RFP R+SKL+PR DGPF+VLE INDN
Sbjct: 1502 ERMNAKYKLARDKGRKHVVFAPGDLVWLHLRKDRFPNLRKSKLMPRADGPFKVLEKINDN 1561
Query: 4532 AYKLDLPGEYNVSATFNVSDLSPFDVGDD---WRTNPFQEEGNDANHGTVTRTQA 4687
AYKL+LP ++ VS TFN++DL P+ +D RT FQE +D + T+ A
Sbjct: 1562 AYKLELPADFGVSPTFNIADLKPYLGEEDELPSRTTSFQEGEDDEDINTIVTPTA 1616
Score = 142 bits (357), Expect(3) = 0.0
Identities = 63/83 (75%), Positives = 71/83 (85%)
Frame = +3
Query: 3921 FVREIVRLHGMPRTIVPDRDAKFLSYFWKTLWCKLGTKLLFSTTCHPQTDGQMEVVNRTL 4100
F REI+RLHG+P TIV DRD KFLS+FW+ LW KLG KLLFSTTCHPQTDGQ EVVNRTL
Sbjct: 1358 FFREIIRLHGVPNTIVSDRDTKFLSHFWRCLWAKLGNKLLFSTTCHPQTDGQTEVVNRTL 1417
Query: 4101 STLLWAIIKKNIKTWEECLPHVE 4169
ST+L A++K N K WEECLPH+E
Sbjct: 1418 STMLRAVLKNNKKMWEECLPHIE 1440
Score = 189 bits (480), Expect(2) = 5e-65
Identities = 108/268 (40%), Positives = 151/268 (56%), Gaps = 15/268 (5%)
Frame = +2
Query: 1067 TYDEAKNRVKKEATSHGNQGKSDSS---TSRNHDIKCFKCQGRGHIASQCPNKRVMVLRX 1237
T +A++ + ++T G S SS T + HDI C +C+G GH A +CP+KRVM++
Sbjct: 381 TIKQAQSPLSAKSTPSGPAKSSSSSMASTGQTHDIICRRCKGGGHYARECPSKRVMIVSE 440
Query: 1238 XXXXXXXXXXXXXFMPPLE------DANDKEYA------AQGGDLLVARRALSVQAKEDG 1381
+ + D +D E A + LVA+R LSVQ +
Sbjct: 441 DGGYESASDYDEETLALITRDKHGGDDSDHETQYMAPEDADRYECLVAQRVLSVQVTQAE 500
Query: 1382 EVQLENIFHTRCHVQNKVCSVIIDGGSCTNVASTIMVEKLGLQTTKHPRPYKLQWLNDSG 1561
+ Q N+FHT+ V+ + VIIDGGSC N+AS MVEKL L T HP PY +QW N+SG
Sbjct: 501 QNQRHNLFHTKGVVKERSVRVIIDGGSCNNLASMEMVEKLSLITRPHPHPYYIQWFNNSG 560
Query: 1562 EVKVNKQVLVSFCIGKYEDEVLCDVVPMQAGHLLLGRPWQFDRRVKHDGSTNKYSFVLNQ 1741
+VKV + V V F I Y D V CDVVPMQA LLLGRPWQFD+ H N Y+ V
Sbjct: 561 KVKVTRTVRVHFSISTYADYVDCDVVPMQACSLLLGRPWQFDKNSVHHDRKNLYTLVHKD 620
Query: 1742 RTITLVPLTPKQVHEDQVILQKESEKKK 1825
+ ITL+P+TP+ + +D + +++++K
Sbjct: 621 KNITLLPMTPESILKDDINRANKAKQEK 648
Score = 89.7 bits (221), Expect(2) = 5e-65
Identities = 44/91 (48%), Positives = 61/91 (67%)
Frame = +3
Query: 1926 AKASEIKRAMFSNQPMIVLLYKEAYFNANQLNASLPSSVVSLLQDFDDIFPKEIPNGLPP 2105
A S+I FS + KEA F+ + +SLP +V ++LQ+F D+FP+++P GLPP
Sbjct: 687 ATKSDIDDLDFSKSVCYAFVCKEALFSFEDVPSSLPPAVTNILQEFTDVFPQDVPPGLPP 746
Query: 2106 IRGIEHQIDFVLGATIPN*PA*RSNPE*TKE 2198
IRGIEHQID + GA++PN R+NPE TKE
Sbjct: 747 IRGIEHQIDLIPGASLPNRAPYRTNPEETKE 777
Score = 122 bits (307), Expect = 1e-24
Identities = 66/179 (36%), Positives = 96/179 (53%), Gaps = 1/179 (0%)
Frame = +3
Query: 459 REDNNLSSIKMKIPLFQGKNDPEAYLEWEKKVELVFDCHNYSENKKVKLAAIEFSDYAFV 638
R+ ++L +K+ IP F+G+ P+ YL WE + E F C Y E ++V A F+ +A V
Sbjct: 167 RDHDHLPKLKLNIPPFEGRYVPDIYLTWELETEQQFTCLQYPEERRVPAAVCAFTSFACV 226
Query: 639 W*DQLVLNRRRNRERPIE-TWEEMKTVMRKRFVPSYYYRELYNKLQSLKQGNRSXXXXXX 815
W + R PI TW +KT MR R+VP YY EL KLQ L+QG S
Sbjct: 227 WWSE------HCRLYPIPATWAALKTAMRTRWVPPYYQHELLQKLQRLRQGKNSVEEYYQ 280
Query: 816 XXXXXXIRANVEEDREATMSRFLVGLNREIANAVELQHYVELEDMVHMAIKIENQLKRR 992
IR + E+ EA ++RF+ GLNREI +E + Y + + H+A K E +++ R
Sbjct: 281 ELQTGMIRCGIVEENEAMLARFMGGLNREIQTILEYKDYTNITRLFHLACKAEREVQDR 339
>gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]
Length = 1717
Score = 818 bits (2112), Expect(3) = 0.0
Identities = 388/596 (65%), Positives = 480/596 (80%), Gaps = 1/596 (0%)
Frame = +1
Query: 2149 PFQTDQLKGVTPSRQRKVIELMEKGYVRENMSPCAVLVILVPKKDRLWRMCVDCRAINNI 2328
P++T+ + T R+V EL++KGY+RE++SPCAV +ILVPKKD RMCVDCR INNI
Sbjct: 779 PYRTNPEE--TKEIMRQVQELLDKGYIRESLSPCAVPIILVPKKDGTSRMCVDCRGINNI 836
Query: 2329 MVKYRHPIPRLDDMLDELHGSCVFSKIDLKSEYHRIRMKEGDEWKTKFKTKYGLYE*LVM 2508
++YRHPIPRLDDMLDEL GS +FSK+DL+S YH+IRMK GDEWKT FKTK+GLYE LVM
Sbjct: 837 TIRYRHPIPRLDDMLDELSGSIIFSKVDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVM 896
Query: 2509 PFGLINATSTFMRLMNHVLRAFIENFVVIYFDDILIYSQNLDDHLMHLKLVLDVLRKEKL 2688
PFGL NA STFMRLMN VLRAFI FVV+YFDDILIYS++L+DHL HL+ V LR +L
Sbjct: 897 PFGLTNAPSTFMRLMNEVLRAFIGRFVVVYFDDILIYSRSLEDHLDHLRAVFTALRDARL 956
Query: 2689 FANLKKCTFCTNKHVFLGFVTSTQGIQVDEEKIHAIQEWPSPTSVSNV*SFHGLASFYRR 2868
F NL KCTFCT++ FLG+V + QGI+VD+ KI AI+ WP P +V+ V SF GLA FYRR
Sbjct: 957 FGNLGKCTFCTDRVSFLGYVVTPQGIEVDKAKIEAIESWPQPKTVTQVRSFLGLAGFYRR 1016
Query: 2869 FVKDFNSIAAPITKVIKKNAGFKWGEEQEKAFQLIKQKLTHAPLHALPNFAKAFEIDCDA 3048
FV+DF++IAAP+ ++ KK+ + WG QE+AF ++K KLTHAPL LP+F K FE++CDA
Sbjct: 1017 FVRDFSTIAAPLNELTKKDVPYSWGTAQEEAFTVLKDKLTHAPLLQLPDFNKTFELECDA 1076
Query: 3049 LGLGIGVVLIQEGRPLAYFSEKLSGAALNYPTYDKEMYALVRSLETWQYYLWPKEFVIHI 3228
G+G+G VL+Q+G+P+AYFSEKLSG +LNY TYDKE+YALVR+LETWQ+YLWPKEFVIH
Sbjct: 1077 SGIGLGGVLLQDGKPVAYFSEKLSGPSLNYSTYDKELYALVRTLETWQHYLWPKEFVIHS 1136
Query: 3229 DHESLKHLRGQHKLNKGRARWVEFFETFPYVIQYKQGKENIVADALSRRYILISTLDAKI 3408
DHESLKH++ Q KLN+ A+WVEF ETFPYVI+ K+GK+N++ADALSRRY ++S LD KI
Sbjct: 1137 DHESLKHIKSQAKLNRRHAKWVEFIETFPYVIKDKKGKDNVIADALSRRYTMLSQLDFKI 1196
Query: 3409 LGFEHIKELYPLDHDFNEEYESCEE-TTNGKYFRHEGFLFRENKLCIPNCSVRDLLVRES 3585
G E IK+ Y D DF + E+C E T K+ + GF+FR NKLCIP S+R LL++E+
Sbjct: 1197 FGLETIKDQYVHDADFKDVLENCREGRTWNKFIINNGFVFRANKLCIPASSIRLLLLQEA 1256
Query: 3586 HGGGLMGHFGVAKTLAILQEHFYWPHMKRDVERICGRCVTCRQAKSRVPPHGLYTPLPIP 3765
HGGGLMGHFGV K +L HF+WP M+RDVER RC TC++AKSR+ PHGLY PLP+P
Sbjct: 1257 HGGGLMGHFGVKKMEDVLATHFFWPRMRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVP 1316
Query: 3766 STPWIDISMDFMLGLPRSKRGRDSVFVVVDRFSKMAHFIPCHNMNDASHVADLLGR 3933
S PW DISMDF+LGLPR+K+GRDS+FVVVDRFSKMAHFIPCH +DA++VADL R
Sbjct: 1317 SVPWEDISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDAANVADLFFR 1372
Score = 173 bits (439), Expect(3) = 0.0
Identities = 86/175 (49%), Positives = 116/175 (66%), Gaps = 3/175 (1%)
Frame = +2
Query: 4172 AYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSERVNLDGKKKAEFVKQIHEKARLNI 4351
AYN ++HS TK PFEIVY F P P+DL P+P SE+VN D K++AE + ++HE + NI
Sbjct: 1454 AYNRSLHSTTKMCPFEIVYGFLPRAPIDLLPIPSSEKVNFDAKERAELILKMHELTKENI 1513
Query: 4352 E*RTEQYAKQANKGRHKIVFEAEDWVWLHMRKERFPAQRRSKLLPRGDGPFQVLEHINDN 4531
E +Y +KGR +VF D VWLH+RK+RFP R+SKL+PR GPF+VLE INDN
Sbjct: 1514 ERMNARYKLAGDKGRKHVVFAPGDLVWLHLRKDRFPDLRKSKLMPRAGGPFKVLEKINDN 1573
Query: 4532 AYKLDLPGEYNVSATFNVSDLSPFDVGDD---WRTNPFQEEGNDANHGTVTRTQA 4687
AY+L+LP ++ VS TFN++DL P+ +D RT QE +D + T+ A
Sbjct: 1574 AYRLELPXDFGVSPTFNIADLKPYLGEEDELPSRTTSVQEGEDDEDINTIATPTA 1628
Score = 145 bits (366), Expect(3) = 0.0
Identities = 64/83 (77%), Positives = 74/83 (89%)
Frame = +3
Query: 3921 FVREIVRLHGMPRTIVPDRDAKFLSYFWKTLWCKLGTKLLFSTTCHPQTDGQMEVVNRTL 4100
F REI+RLHG+P TIV DRDAKFLS+FW+ LW KLGTKLLFSTTCHPQTDGQ EVVNR+L
Sbjct: 1370 FFREIIRLHGVPNTIVSDRDAKFLSHFWRCLWAKLGTKLLFSTTCHPQTDGQTEVVNRSL 1429
Query: 4101 STLLWAIIKKNIKTWEECLPHVE 4169
ST+L A++K N+K WEECLPH+E
Sbjct: 1430 STMLRAVLKTNLKLWEECLPHIE 1452
Score = 189 bits (480), Expect = 1e-44
Identities = 99/238 (41%), Positives = 140/238 (58%), Gaps = 12/238 (5%)
Frame = +2
Query: 1118 NQGKSDSSTSRNHDIKCFKCQGRGHIASQCPNKRVMVLRXXXXXXXXXXXXXXFMPPL-- 1291
+ S +ST + H++ C +C+G GH A +CP+KRVM++ + +
Sbjct: 414 SSSSSTASTGQTHEVICRRCKGGGHYARECPSKRVMIITEDGGYDSASDYDEETLALIAS 473
Query: 1292 ------EDANDKEYAAQGG----DLLVARRALSVQAKEDGEVQLENIFHTRCHVQNKVCS 1441
+ A + +Y A + LVA+R LSVQ + + Q N+FHT+ V+ +
Sbjct: 474 EERGVXDTAQETQYMAADYADRYESLVAQRVLSVQVTQVEQNQRHNLFHTKGVVKERSVR 533
Query: 1442 VIIDGGSCTNVASTIMVEKLGLQTTKHPRPYKLQWLNDSGEVKVNKQVLVSFCIGKYEDE 1621
VIIDGGSC N+AS MVEKL L T HP PY +QW N+SG+VKV + V V F I Y D
Sbjct: 534 VIIDGGSCNNLASMEMVEKLSLTTRPHPHPYYIQWFNNSGKVKVTRTVRVHFSIATYSDF 593
Query: 1622 VLCDVVPMQAGHLLLGRPWQFDRRVKHDGSTNKYSFVLNQRTITLVPLTPKQVHEDQV 1795
V CDVVPMQA +LLGRPWQFD+ H G TN+Y+ V + ITL+P++P+ + +D +
Sbjct: 594 VDCDVVPMQACSVLLGRPWQFDKNSVHHGRTNQYTLVHKDQNITLLPMSPEHIMKDDI 651
Score = 120 bits (302), Expect = 5e-24
Identities = 64/194 (32%), Positives = 102/194 (52%), Gaps = 2/194 (1%)
Frame = +3
Query: 459 REDNNLSSIKMKIPLFQGKNDPEAYLEWEKKVELVFDCHNYSENKKVKLAAIEFSDYAFV 638
R+ ++L +K+ IP F G+ P+ YL WE + E F C + E+++V A F+ +A +
Sbjct: 177 RDHDHLPKVKLNIPSFDGRYVPDLYLTWELETEQRFTCLQFPEDRRVAAAVCSFTSFACI 236
Query: 639 W*DQLVLNRRRNRERPIETWEEMKTVMRKRFVPSYYYRELYNKLQSLKQGNRSXXXXXXX 818
W + N TW +KT MR R+VP YY R+L LQ L+QG +S
Sbjct: 237 WWSEYCRIHHANIPA---TWAALKTAMRTRWVPPYYQRDLLQNLQRLRQGKKSVEEYYQE 293
Query: 819 XXXXXIRANVEEDREATMSRFLVGLNREIANAVELQHYVELEDMVHMAIKIENQLKRRGS 998
IR + ED EA ++RF+ GLNR+I +E + Y + + H+A K E +++ R +
Sbjct: 294 LQTGMIRCGIVEDNEAMLARFMGGLNRDIQTILEYKDYNTITRLFHLACKAEREVQDRQA 353
Query: 999 TCPSQNPS--TSAW 1034
+ + TS+W
Sbjct: 354 LARTNFSAGRTSSW 367
Score = 85.9 bits (211), Expect = 2e-13
Identities = 41/91 (45%), Positives = 60/91 (65%)
Frame = +3
Query: 1926 AKASEIKRAMFSNQPMIVLLYKEAYFNANQLNASLPSSVVSLLQDFDDIFPKEIPNGLPP 2105
A S+I + + KE F+ + +SLP +V+++LQ+F D+FP+++P GLPP
Sbjct: 699 ATKSDITDLDITTSVCYAFVCKEVLFSFEDMPSSLPPAVINILQEFADVFPQDVPPGLPP 758
Query: 2106 IRGIEHQIDFVLGATIPN*PA*RSNPE*TKE 2198
IRGIEHQID + GA++PN R+NPE TKE
Sbjct: 759 IRGIEHQIDLIPGASLPNRAPYRTNPEETKE 789
>gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 1619
Score = 816 bits (2108), Expect(3) = 0.0
Identities = 390/596 (65%), Positives = 476/596 (79%), Gaps = 1/596 (0%)
Frame = +1
Query: 2149 PFQTDQLKGVTPSRQRKVIELMEKGYVRENMSPCAVLVILVPKKDRLWRMCVDCRAINNI 2328
P++T+ + T QR+V EL++KGYVRE++SPCAV VILVPKKD WRMCVDCRAINNI
Sbjct: 702 PYRTNPEE--TKEIQRQVHELLDKGYVRESLSPCAVPVILVPKKDGSWRMCVDCRAINNI 759
Query: 2329 MVKYRHPIPRLDDMLDELHGSCVFSKIDLKSEYHRIRMKEGDEWKTKFKTKYGLYE*LVM 2508
++YRHPIPRLDDMLDEL GS VFSK++L+S YH+I MK GDEWKT FKTK+GLYE LVM
Sbjct: 760 TIRYRHPIPRLDDMLDELSGSIVFSKVELRSGYHQIHMKLGDEWKTAFKTKFGLYEWLVM 819
Query: 2509 PFGLINATSTFMRLMNHVLRAFIENFVVIYFDDILIYSQNLDDHLMHLKLVLDVLRKEKL 2688
PFGL NA STFMRLMN VLR FI FVV+YFDDILIYS+++ +H HL+ V + LR +L
Sbjct: 820 PFGLTNAPSTFMRLMNEVLRPFIGKFVVVYFDDILIYSKSMGEHFNHLRAVFNALRDARL 879
Query: 2689 FANLKKCTFCTNKHVFLGFVTSTQGIQVDEEKIHAIQEWPSPTSVSNV*SFHGLASFYRR 2868
F NL+KCTFCT++ FLG+V + QGI+VD+ K+ AIQ WP+P +VS V SF GLA FY R
Sbjct: 880 FGNLEKCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIQSWPTPKTVSQVRSFLGLAGFYCR 939
Query: 2869 FVKDFNSIAAPITKVIKKNAGFKWGEEQEKAFQLIKQKLTHAPLHALPNFAKAFEIDCDA 3048
FV+DF++IAAP+ + KK F WG QE AF ++K KLTHAPL LP+F K FE++CDA
Sbjct: 940 FVQDFSTIAAPLNALTKKGVPFTWGTSQENAFHMLKHKLTHAPLLQLPDFNKTFELECDA 999
Query: 3049 LGLGIGVVLIQEGRPLAYFSEKLSGAALNYPTYDKEMYALVRSLETWQYYLWPKEFVIHI 3228
G+G+G VL+QEG+ +AYFSEKLSG LNY TYDKE+YALVR+LETWQ+YLWPKEFVIH
Sbjct: 1000 SGIGLGGVLLQEGKLVAYFSEKLSGPVLNYSTYDKELYALVRTLETWQHYLWPKEFVIHS 1059
Query: 3229 DHESLKHLRGQHKLNKGRARWVEFFETFPYVIQYKQGKENIVADALSRRYILISTLDAKI 3408
DHESLKH+R Q KLN+ A+WVEF E+FPYVI++K+GKENI+A+ALSRRY L++ LD KI
Sbjct: 1060 DHESLKHIRSQGKLNRRHAKWVEFIESFPYVIKHKKGKENIIANALSRRYTLLTQLDYKI 1119
Query: 3409 LGFEHIKELYPLDHDFNEEYESCEE-TTNGKYFRHEGFLFRENKLCIPNCSVRDLLVRES 3585
G E IK+ Y D DFN+ C++ T K+ ++GF+FR NKLCIP SVR LL++E+
Sbjct: 1120 FGLETIKDQYAHDADFNDVLLHCKDGRTWNKFVINDGFVFRANKLCIPASSVRLLLLQEA 1179
Query: 3586 HGGGLMGHFGVAKTLAILQEHFYWPHMKRDVERICGRCVTCRQAKSRVPPHGLYTPLPIP 3765
HGGGLMGHFG KT IL HF+WP M+RDV R RC TC++AKSR+ PHGLY PLP+P
Sbjct: 1180 HGGGLMGHFGAKKTHDILASHFFWPQMRRDVGRFVARCATCQKAKSRLHPHGLYMPLPVP 1239
Query: 3766 STPWIDISMDFMLGLPRSKRGRDSVFVVVDRFSKMAHFIPCHNMNDASHVADLLGR 3933
+ PW DISMDF+LGLPR+KRGRDS+FVVVDRFSKM HFIPCH +DASH+ADL R
Sbjct: 1240 TVPWEDISMDFVLGLPRTKRGRDSIFVVVDRFSKMVHFIPCHKTDDASHIADLFFR 1295
Score = 172 bits (435), Expect(3) = 0.0
Identities = 85/170 (50%), Positives = 114/170 (67%), Gaps = 3/170 (1%)
Frame = +2
Query: 4172 AYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSERVNLDGKKKAEFVKQIHEKARLNI 4351
A N ++HS TK PF+IVY P P+DL PLP SE++N D K++AE + ++HE + NI
Sbjct: 1377 ACNRSLHSTTKMCPFQIVYSLLPRAPIDLMPLPSSEKLNFDAKQRAELMLKLHETTKENI 1436
Query: 4352 E*RTEQYAKQANKGRHKIVFEAEDWVWLHMRKERFPAQRRSKLLPRGDGPFQVLEHINDN 4531
E +Y +KGR ++ FE D VWLH+RKERFP R+SKL+PR DGPF+VL IN+N
Sbjct: 1437 ERMNAKYKFAGDKGRRELNFEPGDLVWLHLRKERFPDLRKSKLMPRADGPFKVLAKINEN 1496
Query: 4532 AYKLDLPGEYNVSATFNVSDLSPFDVGDD---WRTNPFQEEGNDANHGTV 4672
AYK+DLP ++ VS TFNV+DL P+ +D RT QE +D N T+
Sbjct: 1497 AYKIDLPADFGVSPTFNVADLKPYLGEEDELESRTTQMQEGEDDENINTI 1546
Score = 152 bits (383), Expect(3) = 0.0
Identities = 68/83 (81%), Positives = 76/83 (91%)
Frame = +3
Query: 3921 FVREIVRLHGMPRTIVPDRDAKFLSYFWKTLWCKLGTKLLFSTTCHPQTDGQMEVVNRTL 4100
F REIVRLHG+P TIV DRD KFLS+FW+TLW KLGTKLLFSTTCHPQTDGQ+EVVNRTL
Sbjct: 1293 FFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQIEVVNRTL 1352
Query: 4101 STLLWAIIKKNIKTWEECLPHVE 4169
ST+L A++KKNIK WEECLPH+E
Sbjct: 1353 STMLRAVLKKNIKMWEECLPHIE 1375
Score = 190 bits (483), Expect(3) = e-100
Identities = 100/248 (40%), Positives = 143/248 (57%), Gaps = 9/248 (3%)
Frame = +2
Query: 1100 EATSHGNQGKSDSSTSRNHDIKCFKCQGRGHIASQCPNKRVMVLRXXXXXXXXXXXXXXF 1279
+A S +ST R D++C +C+G GH+ CP+KRV+V++
Sbjct: 349 KAAQPAPSASSMASTGRMRDVQCHRCKGFGHVQRDCPSKRVLVVKNDGEYSSASDFDDDT 408
Query: 1280 MPPLE-DANDKEYA--------AQGGDLLVARRALSVQAKEDGEVQLENIFHTRCHVQNK 1432
+ L D D E A + L+ +R LS Q ++ + Q +F T+C V+ +
Sbjct: 409 LALLAADHADNEPPEEHIGAAFADHYESLIVQRVLSAQMEKAEQNQRHTLFQTKCVVKER 468
Query: 1433 VCSVIIDGGSCTNVASTIMVEKLGLQTTKHPRPYKLQWLNDSGEVKVNKQVLVSFCIGKY 1612
C +IIDGGSC N+AS+ MVEKL L T HP Y +QWLN+SG+ KV K V ++F IG Y
Sbjct: 469 CCRMIIDGGSCNNLASSEMVEKLALSTKPHPHSYYIQWLNNSGKAKVTKLVHINFAIGNY 528
Query: 1613 EDEVLCDVVPMQAGHLLLGRPWQFDRRVKHDGSTNKYSFVLNQRTITLVPLTPKQVHEDQ 1792
D V CDVVPMQA ++LLGRPWQFDR H G +N+YSF+ + + I L P++P+ + D
Sbjct: 529 HDVVECDVVPMQACNILLGRPWQFDRDSMHHGRSNQYSFLYHDKKIVLHPMSPEDILRDD 588
Query: 1793 VILQKESE 1816
V +S+
Sbjct: 589 VAKAAKSK 596
Score = 139 bits (350), Expect(3) = e-100
Identities = 80/206 (38%), Positives = 115/206 (55%), Gaps = 4/206 (1%)
Frame = +3
Query: 447 GARNRE----DNNLSSIKMKIPLFQGKNDPEAYLEWEKKVELVFDCHNYSENKKVKLAAI 614
G R RE D+ S IK KIP F GK DP+AYL WE V+ F CH + E+ +V+ A
Sbjct: 137 GRRRREVCNNDDAFSKIKFKIPPFDGKYDPDAYLSWEIAVDQKFACHEFPESTRVRAATS 196
Query: 615 EFSDYAFVW*DQLVLNRRRNRERPIETWEEMKTVMRKRFVPSYYYRELYNKLQSLKQGNR 794
EF+D+A VW + + ++N +TW+ +K VMR RFVPSYY R+L N+LQ L+Q
Sbjct: 197 EFTDFASVW---WIEHGKKNPNNMPQTWDALKRVMRARFVPSYYARDLLNRLQQLRQ--- 250
Query: 795 SXXXXXXXXXXXXIRANVEEDREATMSRFLVGLNREIANAVELQHYVELEDMVHMAIKIE 974
EE +A M+RFL GLNREI + V+ + Y + + H+A K E
Sbjct: 251 ------------------EETEDAAMARFLGGLNREIYDIVDYKDYTNMTRLFHLACKAE 292
Query: 975 NQLKRRGSTCPSQNPSTSAWKSNHWK 1052
+++ R + S + SA K++ W+
Sbjct: 293 REVQGRRA---SAKANFSAGKTSSWQ 315
Score = 89.0 bits (219), Expect(3) = e-100
Identities = 42/91 (46%), Positives = 61/91 (67%)
Frame = +3
Query: 1926 AKASEIKRAMFSNQPMIVLLYKEAYFNANQLNASLPSSVVSLLQDFDDIFPKEIPNGLPP 2105
A S+I + S L+ K+A + + + SLP +V ++LQ++ D+FPKE+P GLPP
Sbjct: 622 ATKSDINELIASPSVAYALVCKDALISLHDMQHSLPPAVANILQEYSDVFPKEVPPGLPP 681
Query: 2106 IRGIEHQIDFVLGATIPN*PA*RSNPE*TKE 2198
+RGIEHQID + GA++PN R+NPE TKE
Sbjct: 682 VRGIEHQIDLIPGASLPNRAPYRTNPEETKE 712
>gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare]
Length = 1720
Score = 815 bits (2104), Expect(3) = 0.0
Identities = 386/596 (64%), Positives = 479/596 (80%), Gaps = 1/596 (0%)
Frame = +1
Query: 2149 PFQTDQLKGVTPSRQRKVIELMEKGYVRENMSPCAVLVILVPKKDRLWRMCVDCRAINNI 2328
P++T+ + T R+V EL++KGY+RE++SPCAV +ILVPKKD RMCVDCR INNI
Sbjct: 782 PYRTNPEE--TKEIMRQVQELLDKGYIRESLSPCAVPIILVPKKDGTSRMCVDCRGINNI 839
Query: 2329 MVKYRHPIPRLDDMLDELHGSCVFSKIDLKSEYHRIRMKEGDEWKTKFKTKYGLYE*LVM 2508
++ RHPIPRLDDMLDEL GS +FSK+DL+S YH+IRMK GDEWKT FKTK+GLYE LVM
Sbjct: 840 TIRXRHPIPRLDDMLDELSGSIIFSKVDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVM 899
Query: 2509 PFGLINATSTFMRLMNHVLRAFIENFVVIYFDDILIYSQNLDDHLMHLKLVLDVLRKEKL 2688
PFGL NA STFMRLMN VLRAFI FVV+YFDDILIYS++L+DHL HL+ V LR +L
Sbjct: 900 PFGLTNAPSTFMRLMNEVLRAFIGRFVVVYFDDILIYSRSLEDHLDHLRAVFTALRDARL 959
Query: 2689 FANLKKCTFCTNKHVFLGFVTSTQGIQVDEEKIHAIQEWPSPTSVSNV*SFHGLASFYRR 2868
F NL KCTFCT++ FLG+V + QGI+VD+ KI AI+ WP P +V+ V SF G A FYRR
Sbjct: 960 FGNLGKCTFCTDRVSFLGYVVTPQGIEVDKAKIEAIESWPQPKTVTQVRSFLGXAGFYRR 1019
Query: 2869 FVKDFNSIAAPITKVIKKNAGFKWGEEQEKAFQLIKQKLTHAPLHALPNFAKAFEIDCDA 3048
FV+DF++IAAP+ ++ KK+ + WG QE+AF ++K KLTHAPL LP+F K FE++CDA
Sbjct: 1020 FVRDFSTIAAPLNELTKKDVPYSWGTAQEEAFTVLKDKLTHAPLLQLPDFNKTFELECDA 1079
Query: 3049 LGLGIGVVLIQEGRPLAYFSEKLSGAALNYPTYDKEMYALVRSLETWQYYLWPKEFVIHI 3228
G+G+G VL+Q+G+P+AYFSEKLSG +LNY TYDKE+YALVR+LETWQ+YLWPKEFVIH
Sbjct: 1080 SGIGLGGVLLQDGKPVAYFSEKLSGPSLNYSTYDKELYALVRTLETWQHYLWPKEFVIHS 1139
Query: 3229 DHESLKHLRGQHKLNKGRARWVEFFETFPYVIQYKQGKENIVADALSRRYILISTLDAKI 3408
DHESLKH++ Q KLN+ A+WVEF ETFPYVI++K+GK+N++ADALSRRY ++S LD KI
Sbjct: 1140 DHESLKHIKSQAKLNRRHAKWVEFIETFPYVIKHKKGKDNVIADALSRRYTMLSQLDFKI 1199
Query: 3409 LGFEHIKELYPLDHDFNEEYESCEE-TTNGKYFRHEGFLFRENKLCIPNCSVRDLLVRES 3585
G E IK+ Y D DF + E+C E T K+ + GF+FR NKLCIP S+R LL++E+
Sbjct: 1200 FGLETIKDQYVHDADFKDVLENCREGRTWNKFIINNGFVFRANKLCIPASSIRLLLLQEA 1259
Query: 3586 HGGGLMGHFGVAKTLAILQEHFYWPHMKRDVERICGRCVTCRQAKSRVPPHGLYTPLPIP 3765
HGGGLMGHFGV K +L HF+WP M+RDVER RC TC++AKSR+ PHGLY PLP+P
Sbjct: 1260 HGGGLMGHFGVKKMEDVLATHFFWPRMRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVP 1319
Query: 3766 STPWIDISMDFMLGLPRSKRGRDSVFVVVDRFSKMAHFIPCHNMNDASHVADLLGR 3933
S PW DISMDF+LGLPR+K+GRDS+FVVVDRFSKMAHFIPCH +DA++VADL R
Sbjct: 1320 SVPWEDISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDAANVADLFFR 1375
Score = 174 bits (440), Expect(3) = 0.0
Identities = 86/175 (49%), Positives = 116/175 (66%), Gaps = 3/175 (1%)
Frame = +2
Query: 4172 AYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSERVNLDGKKKAEFVKQIHEKARLNI 4351
AYN ++HS TK PFEIVY F P P+DL P+P SE+VN D K++AE + ++HE + NI
Sbjct: 1457 AYNRSLHSTTKMCPFEIVYGFLPRAPIDLLPIPSSEKVNFDAKERAELILKMHELTKENI 1516
Query: 4352 E*RTEQYAKQANKGRHKIVFEAEDWVWLHMRKERFPAQRRSKLLPRGDGPFQVLEHINDN 4531
E +Y +KGR +VF D VWLH+RK+RFP R+SKL+PR GPF+VLE INDN
Sbjct: 1517 ERMNARYKLAGDKGRKHVVFAPGDLVWLHLRKDRFPDLRKSKLMPRAGGPFKVLEKINDN 1576
Query: 4532 AYKLDLPGEYNVSATFNVSDLSPFDVGDD---WRTNPFQEEGNDANHGTVTRTQA 4687
AY+L+LP ++ VS TFN++DL P+ +D RT QE +D + T+ A
Sbjct: 1577 AYRLELPADFGVSPTFNIADLKPYLGEEDELPSRTTSVQEGEDDEDINTIATPTA 1631
Score = 146 bits (369), Expect(3) = 0.0
Identities = 65/83 (78%), Positives = 74/83 (89%)
Frame = +3
Query: 3921 FVREIVRLHGMPRTIVPDRDAKFLSYFWKTLWCKLGTKLLFSTTCHPQTDGQMEVVNRTL 4100
F REI+RLHG+P TIV DRDAKFLS+FW+ LW KLGTKLLFSTTCHPQTDGQ EVVNR+L
Sbjct: 1373 FFREIIRLHGVPNTIVSDRDAKFLSHFWRCLWAKLGTKLLFSTTCHPQTDGQTEVVNRSL 1432
Query: 4101 STLLWAIIKKNIKTWEECLPHVE 4169
ST+L A++K NIK WEECLPH+E
Sbjct: 1433 STMLRAVLKNNIKLWEECLPHIE 1455
Score = 189 bits (480), Expect = 1e-44
Identities = 99/238 (41%), Positives = 140/238 (58%), Gaps = 12/238 (5%)
Frame = +2
Query: 1118 NQGKSDSSTSRNHDIKCFKCQGRGHIASQCPNKRVMVLRXXXXXXXXXXXXXXFMPPL-- 1291
+ S +ST + H++ C +C+G GH A +CP+KRVM++ + +
Sbjct: 417 SSSSSTASTGQTHEVICRRCKGGGHYARECPSKRVMIITEDGGYDSASDYDEETLALIAS 476
Query: 1292 ------EDANDKEYAAQGG----DLLVARRALSVQAKEDGEVQLENIFHTRCHVQNKVCS 1441
+ A + +Y A + LVA+R LSVQ + + Q N+FHT+ V+ +
Sbjct: 477 EERGVADTAQETQYMAADYADRYESLVAQRVLSVQVTQVEQNQRHNLFHTKGVVKERSVR 536
Query: 1442 VIIDGGSCTNVASTIMVEKLGLQTTKHPRPYKLQWLNDSGEVKVNKQVLVSFCIGKYEDE 1621
VIIDGGSC N+AS MVEKL L T HP PY +QW N+SG+VKV + V V F I Y D
Sbjct: 537 VIIDGGSCNNLASMEMVEKLSLTTRPHPHPYYIQWFNNSGKVKVTRTVRVHFSIATYSDF 596
Query: 1622 VLCDVVPMQAGHLLLGRPWQFDRRVKHDGSTNKYSFVLNQRTITLVPLTPKQVHEDQV 1795
V CDVVPMQA +LLGRPWQFD+ H G TN+Y+ V + ITL+P++P+ + +D +
Sbjct: 597 VDCDVVPMQACSVLLGRPWQFDKNSVHHGRTNQYTLVHKDQNITLLPMSPEHIMKDDI 654
Score = 120 bits (300), Expect = 9e-24
Identities = 64/194 (32%), Positives = 101/194 (52%), Gaps = 2/194 (1%)
Frame = +3
Query: 459 REDNNLSSIKMKIPLFQGKNDPEAYLEWEKKVELVFDCHNYSENKKVKLAAIEFSDYAFV 638
R+ ++L +K+ IP F G+ P+ YL WE + E F C + E+++V A F+ +A
Sbjct: 180 RDHDHLPKVKLNIPSFDGRYVPDLYLTWELETEQRFTCLQFPEDRRVAAAVCSFTSFACX 239
Query: 639 W*DQLVLNRRRNRERPIETWEEMKTVMRKRFVPSYYYRELYNKLQSLKQGNRSXXXXXXX 818
W + N TW +KT MR R+VP YY R+L LQ L+QG +S
Sbjct: 240 WWSEYCRIHHANIPA---TWAALKTAMRTRWVPPYYQRDLLQNLQRLRQGKKSVEEYYQE 296
Query: 819 XXXXXIRANVEEDREATMSRFLVGLNREIANAVELQHYVELEDMVHMAIKIENQLKRRGS 998
IR + ED EA ++RF+ GLNR+I +E + Y + + H+A K E +++ R +
Sbjct: 297 LQTGMIRCGIVEDNEAMLARFMGGLNRDIQTILEYKDYXTITRLFHLACKAEREVQDRQA 356
Query: 999 TCPSQNPS--TSAW 1034
+ + TS+W
Sbjct: 357 LARTNFSAGRTSSW 370
Score = 85.9 bits (211), Expect = 2e-13
Identities = 41/91 (45%), Positives = 60/91 (65%)
Frame = +3
Query: 1926 AKASEIKRAMFSNQPMIVLLYKEAYFNANQLNASLPSSVVSLLQDFDDIFPKEIPNGLPP 2105
A S+I + + KE F+ + +SLP +V+++LQ+F D+FP+++P GLPP
Sbjct: 702 ATKSDITDLDITTSVCYAFVCKEVLFSFEDMPSSLPPAVINILQEFADVFPQDVPPGLPP 761
Query: 2106 IRGIEHQIDFVLGATIPN*PA*RSNPE*TKE 2198
IRGIEHQID + GA++PN R+NPE TKE
Sbjct: 762 IRGIEHQIDLIPGASLPNRAPYRTNPEETKE 792
>gb|AAM15062.1| putative retroelement integrase [Arabidopsis thaliana]
Length = 1215
Score = 795 bits (2054), Expect(3) = 0.0
Identities = 369/537 (68%), Positives = 449/537 (83%)
Frame = +1
Query: 2275 KKDRLWRMCVDCRAINNIMVKYRHPIPRLDDMLDELHGSCVFSKIDLKSEYHRIRMKEGD 2454
+KD WRMC DCRAINN+ VKY HPIPRLDDMLDELHGS +FSKIDLKS YH+IRM EGD
Sbjct: 464 QKDGSWRMCFDCRAINNVTVKYCHPIPRLDDMLDELHGSSIFSKIDLKSGYHQIRMNEGD 523
Query: 2455 EWKTKFKTKYGLYE*LVMPFGLINATSTFMRLMNHVLRAFIENFVVIYFDDILIYSQNLD 2634
EWKT FKTK+GLYE LVMPFGL +A STFMRLMNHVLRAFI FV++YFDDIL+YS++L
Sbjct: 524 EWKTAFKTKHGLYEWLVMPFGLTHAPSTFMRLMNHVLRAFIGIFVIVYFDDILVYSESLR 583
Query: 2635 DHLMHLKLVLDVLRKEKLFANLKKCTFCTNKHVFLGFVTSTQGIQVDEEKIHAIQEWPSP 2814
+H+ HL VL+VLRKE+L+ANLKKCTFCT+ VFLGFV S G++VDEEK+ AI++WPSP
Sbjct: 584 EHIEHLDSVLNVLRKEELYANLKKCTFCTDNLVFLGFVVSADGVKVDEEKVKAIRDWPSP 643
Query: 2815 TSVSNV*SFHGLASFYRRFVKDFNSIAAPITKVIKKNAGFKWGEEQEKAFQLIKQKLTHA 2994
+V V SFHGLA FYRRF KDF++I AP+T+V+KK+ GFKW + QE+AFQ +K KLT+A
Sbjct: 644 KTVGEVRSFHGLAGFYRRFFKDFSTIVAPLTEVMKKDVGFKWEKAQEEAFQSLKDKLTNA 703
Query: 2995 PLHALPNFAKAFEIDCDALGLGIGVVLIQEGRPLAYFSEKLSGAALNYPTYDKEMYALVR 3174
P+ L F K FEI+CDA G+GIG VL+Q+ + +A+FSEKL GA LNYPTYDKE+YALVR
Sbjct: 704 PVLILSEFLKTFEIECDASGIGIGAVLMQDQKLIAFFSEKLGGATLNYPTYDKELYALVR 763
Query: 3175 SLETWQYYLWPKEFVIHIDHESLKHLRGQHKLNKGRARWVEFFETFPYVIQYKQGKENIV 3354
+L+ WQ+YLWPK FVIH DHESLKHL+GQ KLNK ARWVEF ETF YVI+YK+GK+N+V
Sbjct: 764 ALQRWQHYLWPKVFVIHTDHESLKHLKGQQKLNKRHARWVEFIETFAYVIKYKKGKDNVV 823
Query: 3355 ADALSRRYILISTLDAKILGFEHIKELYPLDHDFNEEYESCEETTNGKYFRHEGFLFREN 3534
ADALS+RY L+STL+ K++GFE IKE+Y DHDF E Y++CE+ +G+YFR + FLF EN
Sbjct: 824 ADALSQRYTLLSTLNVKLMGFEQIKEVYETDHDFQEVYKACEKFASGRYFRQDKFLFYEN 883
Query: 3535 KLCIPNCSVRDLLVRESHGGGLMGHFGVAKTLAILQEHFYWPHMKRDVERICGRCVTCRQ 3714
+LC+PNCS+RDL VRE+HGGGLMGHFG+AKTL ++ EHF WPHMK DV+RICGRC TC+Q
Sbjct: 884 RLCVPNCSLRDLFVREAHGGGLMGHFGIAKTLEVMTEHFRWPHMKCDVKRICGRCNTCKQ 943
Query: 3715 AKSRVPPHGLYTPLPIPSTPWIDISMDFMLGLPRSKRGRDSVFVVVDRFSKMAHFIP 3885
AKS++ P+GLYTPLPIP PW DISMDF++GLPR+ G+DS+FVV F + F P
Sbjct: 944 AKSKIQPNGLYTPLPIPKHPWNDISMDFVMGLPRT--GKDSIFVVYSPFQIVYGFNP 998
Score = 246 bits (629), Expect(3) = 0.0
Identities = 125/242 (51%), Positives = 165/242 (68%)
Frame = +2
Query: 1094 KKEATSHGNQGKSDSSTSRNHDIKCFKCQGRGHIASQCPNKRVMVLRXXXXXXXXXXXXX 1273
K A ++GK++ STSR D++C+KCQG+GH A++CPNKRVM+L
Sbjct: 135 KPYAAVQDHKGKAEISTSRVRDVRCYKCQGKGHYANECPNKRVMILLDNGEIEPEEEIPD 194
Query: 1274 XFMPPLEDANDKEYAAQGGDLLVARRALSVQAKEDGEVQLENIFHTRCHVQNKVCSVIID 1453
P ++E AQG +LLVARR LSVQ K D + Q +N+FHTRCHV KVCS+IID
Sbjct: 195 S---PSSLKENEELPAQG-ELLVARRTLSVQTKTDEQEQRKNLFHTRCHVHGKVCSLIID 250
Query: 1454 GGSCTNVASTIMVEKLGLQTTKHPRPYKLQWLNDSGEVKVNKQVLVSFCIGKYEDEVLCD 1633
GGSCTNVAS MV+KLGL+ WLNDSG+++V QV+V IGKYEDE+LCD
Sbjct: 251 GGSCTNVASETMVKKLGLK-----------WLNDSGKMRVKNQVVVPIVIGKYEDEILCD 299
Query: 1634 VVPMQAGHLLLGRPWQFDRRVKHDGSTNKYSFVLNQRTITLVPLTPKQVHEDQVILQKES 1813
V+PM+AGH+LLGRPWQ DR+V HDG TN++SF LV +TP +V++DQ+ L+++
Sbjct: 300 VLPMEAGHILLGRPWQSDRKVMHDGFTNRHSFEFKGGKTILVSMTPHEVYQDQIHLKQKK 359
Query: 1814 EK 1819
E+
Sbjct: 360 EQ 361
Score = 112 bits (279), Expect(3) = 0.0
Identities = 53/97 (54%), Positives = 71/97 (73%)
Frame = +3
Query: 1908 RKTNFYAKASEIKRAMFSNQPMIVLLYKEAYFNANQLNASLPSSVVSLLQDFDDIFPKEI 2087
++ NF+AK+ E+K A S QPM++ ++KEA + LPS + SLLQD+ D+FP++
Sbjct: 364 KQPNFFAKSGEVKSAYSSKQPMLLFVFKEALTSLTNFAPVLPSEMTSLLQDYKDVFPEDN 423
Query: 2088 PNGLPPIRGIEHQIDFVLGATIPN*PA*RSNPE*TKE 2198
P GLPPIRGIEHQIDFV GA++PN PA R+NP TKE
Sbjct: 424 PKGLPPIRGIEHQIDFVPGASLPNRPAYRTNPVETKE 460
Score = 180 bits (457), Expect = 5e-42
Identities = 88/150 (58%), Positives = 111/150 (74%)
Frame = +2
Query: 4205 FLPFEIVYCFNPLTPLDLSPLPMSERVNLDGKKKAEFVKQIHEKARLNIE*RTEQYAKQA 4384
+ PF+IVY FNP++P DL PLP+SERV++DGKKKAE V+QIHE AR NIE +T+ YAKQA
Sbjct: 987 YSPFQIVYGFNPISPFDLIPLPLSERVSIDGKKKAELVQQIHENARRNIEEKTKLYAKQA 1046
Query: 4385 NKGRHKIVFEAEDWVWLHMRKERFPAQRRSKLLPRGDGPFQVLEHINDNAYKLDLPGEYN 4564
NKGR + +FE D VW+H+RKERFPAQR+SKL+PR DGPF++++ INDNAY+LDL E
Sbjct: 1047 NKGRREQIFEVGDMVWIHLRKERFPAQRKSKLMPRIDGPFKIIKRINDNAYQLDLQDE-- 1104
Query: 4565 VSATFNVSDLSPFDVGDDWRTNPFQEEGND 4654
D R+NPFQE G+D
Sbjct: 1105 ----------------PDLRSNPFQEGGDD 1118
Score = 110 bits (274), Expect = 9e-21
Identities = 55/109 (50%), Positives = 76/109 (69%)
Frame = +3
Query: 705 MKTVMRKRFVPSYYYRELYNKLQSLKQGNRSXXXXXXXXXXXXIRANVEEDREATMSRFL 884
MK +MRKRFVPS+Y+REL+ KL++L QGNRS +RA++ EDREAT+SRFL
Sbjct: 1 MKAIMRKRFVPSHYHRELHLKLRNLTQGNRSVEEYYKEMETLMLRADISEDREATLSRFL 60
Query: 885 VGLNREIANAVELQHYVELEDMVHMAIKIENQLKRRGSTCPSQNPSTSA 1031
LNR+I + +E Q+YV++E+M+H AI E Q+KR+ S+ S T A
Sbjct: 61 GDLNRDIQDRLETQYYVQIEEMLHKAILFEQQVKRKSSSRSSYGSGTIA 109
>gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum demissum]
Length = 1588
Score = 789 bits (2038), Expect(3) = 0.0
Identities = 382/582 (65%), Positives = 457/582 (78%)
Frame = +1
Query: 2179 TPSRQRKVIELMEKGYVRENMSPCAVLVILVPKKDRLWRMCVDCRAINNIMVKYRHPIPR 2358
T QR+V EL+ KG+VRE+MSPC+V V+LVPKKD WRMCVDCRAIN I VKYRHPIPR
Sbjct: 714 TKELQRQVEELLVKGFVRESMSPCSVPVLLVPKKDGTWRMCVDCRAINKITVKYRHPIPR 773
Query: 2359 LDDMLDELHGSCVFSKIDLKSEYHRIRMKEGDEWKTKFKTKYGLYE*LVMPFGLINATST 2538
LDDMLD+L GS +FSKIDLKS YH+IR+ GDEWKT FKTKYGLYE LVMPFGL NA ST
Sbjct: 774 LDDMLDQLCGSKIFSKIDLKSGYHQIRLNPGDEWKTAFKTKYGLYEWLVMPFGLTNAPST 833
Query: 2539 FMRLMNHVLRAFIENFVVIYFDDILIYSQNLDDHLMHLKLVLDVLRKEKLFANLKKCTFC 2718
FMRLMNHV + F F+V+YFDDILI+SQNLD+HL HLK V +VLR ++LFANLKKCTFC
Sbjct: 834 FMRLMNHVFKDFHGKFIVVYFDDILIFSQNLDEHLEHLKKVFEVLRNQRLFANLKKCTFC 893
Query: 2719 TNKHVFLGFVTSTQGIQVDEEKIHAIQEWPSPTSVSNV*SFHGLASFYRRFVKDFNSIAA 2898
++ VFLGFV S+ G++VD+EKI AI+EWP P SV+ V SFHGLASFYRRFV+DF++IAA
Sbjct: 894 VDRVVFLGFVVSSMGVEVDDEKIKAIKEWPKPNSVTEVRSFHGLASFYRRFVRDFSTIAA 953
Query: 2899 PITKVIKKNAGFKWGEEQEKAFQLIKQKLTHAPLHALPNFAKAFEIDCDALGLGIGVVLI 3078
P+T+VIKK+ F WG+EQ+ AF L+K KL APL LP+F+K+FE++CDA G GIG VL+
Sbjct: 954 PLTEVIKKDKVFTWGKEQDDAFNLLKDKLCSAPLLQLPDFSKSFEVECDASGKGIGAVLM 1013
Query: 3079 QEGRPLAYFSEKLSGAALNYPTYDKEMYALVRSLETWQYYLWPKEFVIHIDHESLKHLRG 3258
Q+ +P+AYFSEKLSGA LNY T DKE+YAL
Sbjct: 1014 QDSKPIAYFSEKLSGATLNYSTNDKELYAL-----------------------------S 1044
Query: 3259 QHKLNKGRARWVEFFETFPYVIQYKQGKENIVADALSRRYILISTLDAKILGFEHIKELY 3438
Q KL++ A+WVEF ETFPYVI YKQGKEN+VADALSRRY+LISTL +K+LGF+ IK LY
Sbjct: 1045 QGKLSRRHAKWVEFIETFPYVIAYKQGKENVVADALSRRYVLISTLTSKLLGFDQIKFLY 1104
Query: 3439 PLDHDFNEEYESCEETTNGKYFRHEGFLFRENKLCIPNCSVRDLLVRESHGGGLMGHFGV 3618
D DF E + C+ K+ + FLF+ENKLC+PNCS+R+L VRE+H GGLMGHFGV
Sbjct: 1105 ANDSDFGEIFAECKLGPFEKFNLQDEFLFKENKLCVPNCSLRELFVREAHCGGLMGHFGV 1164
Query: 3619 AKTLAILQEHFYWPHMKRDVERICGRCVTCRQAKSRVPPHGLYTPLPIPSTPWIDISMDF 3798
KTL IL EHFYWP M++DVE++C C+ C+QAKSR PHGLYTPLP+ ++PWIDISMDF
Sbjct: 1165 PKTLEILSEHFYWPSMRKDVEKVCSYCLECKQAKSRTLPHGLYTPLPVSNSPWIDISMDF 1224
Query: 3799 MLGLPRSKRGRDSVFVVVDRFSKMAHFIPCHNMNDASHVADL 3924
+LGLPR+K G+DS+FVVVDRFSKMA FIPC NDASHVADL
Sbjct: 1225 ILGLPRTKYGKDSIFVVVDRFSKMARFIPCKKTNDASHVADL 1266
Score = 221 bits (562), Expect(3) = 0.0
Identities = 111/199 (55%), Positives = 141/199 (70%), Gaps = 17/199 (8%)
Frame = +2
Query: 4172 AYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSERVNLDGKKKAEFVKQIHEKARLNI 4351
AYN T HS+T PFE+VY FNPLTPLDL PLP ++ NLDGKKKA+ +K+IHE+ RL I
Sbjct: 1351 AYNRTFHSSTGKTPFEVVYGFNPLTPLDLLPLPTNDFANLDGKKKADMMKKIHEQTRLAI 1410
Query: 4352 E*RTEQYAKQANKGRHKIVFEAEDWVWLHMRKERFPAQRRSKLLPRGDGPFQVLEHINDN 4531
E + ++ A + NKGR ++F+ D VW+HMRKERFP++R++KL PRG GP++VLE I DN
Sbjct: 1411 EKKNKEVALRRNKGRKYVIFKPGDLVWVHMRKERFPSKRKTKLDPRGSGPYKVLERIGDN 1470
Query: 4532 AYKLDLPGEYNVSATFNVSDLSPFDVGDDWRTNPFQEEGNDANHGT-------------- 4669
AYKLDLPGE+ VSATFNVSDLS +D D RTN QEEGND+ G+
Sbjct: 1471 AYKLDLPGEFQVSATFNVSDLSHYDADLDSRTNSLQEEGNDSIQGSSTPLKDKDDALETP 1530
Query: 4670 ---VTRTQANKFKDALSGL 4717
+TR+Q +F D L+GL
Sbjct: 1531 RRPITRSQTKEFNDKLNGL 1549
Score = 129 bits (324), Expect(3) = 0.0
Identities = 59/83 (71%), Positives = 71/83 (85%)
Frame = +3
Query: 3921 FVREIVRLHGMPRTIVPDRDAKFLSYFWKTLWCKLGTKLLFSTTCHPQTDGQMEVVNRTL 4100
FV+E+V+LHG+PRTIV DRDAKFLS+FW+ LW KLGTKLLFST+CHPQTDGQ EVVNRTL
Sbjct: 1267 FVKEVVKLHGIPRTIVSDRDAKFLSHFWRILWGKLGTKLLFSTSCHPQTDGQTEVVNRTL 1326
Query: 4101 STLLWAIIKKNIKTWEECLPHVE 4169
+L AI+K + +WE+ LP VE
Sbjct: 1327 GNMLRAILKGKLTSWEDYLPIVE 1349
Score = 216 bits (551), Expect(2) = e-108
Identities = 110/251 (43%), Positives = 151/251 (60%)
Frame = +2
Query: 1073 DEAKNRVKKEATSHGNQGKSDSSTSRNHDIKCFKCQGRGHIASQCPNKRVMVLRXXXXXX 1252
D K +V+K G + + S+ + I+C KC GRGH+ +CP++R ++LR
Sbjct: 318 DRGKGKVEK-----GGKTFNPKSSKPSSSIQCHKCHGRGHMMHECPSRRNILLRENGEYE 372
Query: 1253 XXXXXXXXFMPPLEDANDKEYAAQGGDLLVARRALSVQAKEDGEVQLENIFHTRCHVQNK 1432
D G + V RR +++ E Q EN+FHTRC ++ K
Sbjct: 373 SEKSEREEEEGEGVSEEDDLELPNDGIIGVVRRIMTINLGSVDEGQRENLFHTRCGIKGK 432
Query: 1433 VCSVIIDGGSCTNVASTIMVEKLGLQTTKHPRPYKLQWLNDSGEVKVNKQVLVSFCIGKY 1612
S+IIDGGSC NV S+ +V+KLG+ K PY+LQWLND GEV+VNKQ ++SF +G+Y
Sbjct: 433 TYSMIIDGGSCANVVSSYLVDKLGIACMKRSTPYRLQWLNDCGEVQVNKQCMISFNVGRY 492
Query: 1613 EDEVLCDVVPMQAGHLLLGRPWQFDRRVKHDGSTNKYSFVLNQRTITLVPLTPKQVHEDQ 1792
EDE+LCDVVPMQA H+LLGRPWQ+DR H G N+YS + N + TL PL+P QV EDQ
Sbjct: 493 EDEILCDVVPMQACHVLLGRPWQYDRDTTHHGRKNRYSLLHNGKKYTLAPLSPSQVFEDQ 552
Query: 1793 VILQKESEKKK 1825
L++ K+K
Sbjct: 553 KRLRETMGKQK 563
Score = 205 bits (522), Expect(2) = e-108
Identities = 105/218 (48%), Positives = 146/218 (66%), Gaps = 2/218 (0%)
Frame = +3
Query: 444 RGARNR-EDNNLSSIKMKIPLFQGKNDPEAYLEWEKKVELVFDCHNYSENKKVKLAAIEF 620
RG R R ED+N++SIKMK+ F+G DP+ YL+WE++VE +FDCHNYSE KKVKLA +EF
Sbjct: 103 RGQRGRVEDDNINSIKMKMSSFKGTRDPDLYLDWERRVEAIFDCHNYSEGKKVKLAVVEF 162
Query: 621 SDYAFVW*DQLVLNRRRNRERPIETWEEMKTVMRKRFVPSYYYRELYNKLQSLKQGNRSX 800
SDYA W +L +R + PI TW EMK VMRKRF+PSY+ R+L ++LQ LKQG+ S
Sbjct: 163 SDYAASWWKKLARDRLQEELPPIATWAEMKRVMRKRFIPSYFQRDLQSRLQRLKQGSMSV 222
Query: 801 XXXXXXXXXXXIRANVEEDREATMSRFLVGLNREIANAVELQHYVELEDMVHMAIKIENQ 980
I+AN E+ EAT++RFL GLN EIAN VE+Q YV L+++V +++K+E Q
Sbjct: 223 DEYFKSMDMAMIQANCMEEEEATIARFLNGLNTEIANVVEIQQYVTLDELVDLSVKVEKQ 282
Query: 981 L-KRRGSTCPSQNPSTSAWKSNHWKKDEKQLMMKPKTE 1091
+ K++ + P+T + K W E + KP+ +
Sbjct: 283 IEKKQQNNSWRSRPNTISKKP--WSTQEGKAPSKPQDD 318
Score = 114 bits (284), Expect = 6e-22
Identities = 57/102 (55%), Positives = 70/102 (68%)
Frame = +3
Query: 1893 ERKTERKTNFYAKASEIKRAMFSNQPMIVLLYKEAYFNANQLNASLPSSVVSLLQDFDDI 2072
E K ++ + Y KA E A P+I+L YKE N QL SLP+SV SLLQ+F+D+
Sbjct: 615 EAKEKKNESLYIKAKECLNARREGLPIILLTYKEILINFEQLTPSLPNSVSSLLQNFEDV 674
Query: 2073 FPKEIPNGLPPIRGIEHQIDFVLGATIPN*PA*RSNPE*TKE 2198
FP + P GLPP+RGIEHQIDFV G+ +PN PA RSNPE TKE
Sbjct: 675 FPDDTPKGLPPLRGIEHQIDFVPGSQLPNRPAYRSNPEETKE 716
>gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum demissum]
Length = 1588
Score = 788 bits (2035), Expect(3) = 0.0
Identities = 382/582 (65%), Positives = 456/582 (78%)
Frame = +1
Query: 2179 TPSRQRKVIELMEKGYVRENMSPCAVLVILVPKKDRLWRMCVDCRAINNIMVKYRHPIPR 2358
T QR+V EL+ KG+VRE+MSPC+V V+LVPKKD WRMCVDCRAIN I VKYRHPIPR
Sbjct: 714 TKELQRQVEELLVKGFVRESMSPCSVPVLLVPKKDGTWRMCVDCRAINKITVKYRHPIPR 773
Query: 2359 LDDMLDELHGSCVFSKIDLKSEYHRIRMKEGDEWKTKFKTKYGLYE*LVMPFGLINATST 2538
LDDMLD+L GS +FSKIDLKS YH+IR+ GDEWKT FKTKYGLYE LVMPFGL NA ST
Sbjct: 774 LDDMLDQLCGSKIFSKIDLKSGYHQIRLNPGDEWKTAFKTKYGLYEWLVMPFGLTNAPST 833
Query: 2539 FMRLMNHVLRAFIENFVVIYFDDILIYSQNLDDHLMHLKLVLDVLRKEKLFANLKKCTFC 2718
FMRLMNHV + F F+V+YFDDILI+SQNLD+HL HLK V +VLR ++LFANLKKCTFC
Sbjct: 834 FMRLMNHVFKDFHGKFIVVYFDDILIFSQNLDEHLEHLKKVFEVLRNQRLFANLKKCTFC 893
Query: 2719 TNKHVFLGFVTSTQGIQVDEEKIHAIQEWPSPTSVSNV*SFHGLASFYRRFVKDFNSIAA 2898
++ VFLGFV S+ G++VD+EKI AI+EWP P SV+ V SFHGLASFYRRFV+DF++IAA
Sbjct: 894 VDRVVFLGFVVSSMGVEVDDEKIKAIKEWPKPNSVTEVRSFHGLASFYRRFVRDFSTIAA 953
Query: 2899 PITKVIKKNAGFKWGEEQEKAFQLIKQKLTHAPLHALPNFAKAFEIDCDALGLGIGVVLI 3078
P+T+VIKK+ F WG+EQ+ AF L+K KL APL LP+F+K+FE++CDA G GIG VL+
Sbjct: 954 PLTEVIKKDKVFTWGKEQDDAFNLLKDKLCSAPLLQLPDFSKSFEVECDASGKGIGAVLM 1013
Query: 3079 QEGRPLAYFSEKLSGAALNYPTYDKEMYALVRSLETWQYYLWPKEFVIHIDHESLKHLRG 3258
Q+ +P+AYFSEKLSGA LNY T DKE+YAL
Sbjct: 1014 QDSKPIAYFSEKLSGATLNYSTNDKELYAL-----------------------------S 1044
Query: 3259 QHKLNKGRARWVEFFETFPYVIQYKQGKENIVADALSRRYILISTLDAKILGFEHIKELY 3438
Q KL++ A+WVEF ETFPYVI YKQGKEN+VADALSRRY+LISTL +K+LGF+ IK LY
Sbjct: 1045 QGKLSRRHAKWVEFIETFPYVIAYKQGKENVVADALSRRYVLISTLTSKLLGFDQIKFLY 1104
Query: 3439 PLDHDFNEEYESCEETTNGKYFRHEGFLFRENKLCIPNCSVRDLLVRESHGGGLMGHFGV 3618
D DF E + C+ K+ + FLF+ENKLC+PNCS+R+L VRE+H GGLMGHFGV
Sbjct: 1105 ANDSDFGEIFAECKLGPFEKFNLQDEFLFKENKLCVPNCSLRELFVREAHCGGLMGHFGV 1164
Query: 3619 AKTLAILQEHFYWPHMKRDVERICGRCVTCRQAKSRVPPHGLYTPLPIPSTPWIDISMDF 3798
KTL IL EHFYWP M++DVE++C C+ C+QAKSR PHGLYTPLP+ + PWIDISMDF
Sbjct: 1165 PKTLEILSEHFYWPSMRKDVEKVCSYCLECKQAKSRTLPHGLYTPLPVSNFPWIDISMDF 1224
Query: 3799 MLGLPRSKRGRDSVFVVVDRFSKMAHFIPCHNMNDASHVADL 3924
+LGLPR+K G+DS+FVVVDRFSKMA FIPC NDASHVADL
Sbjct: 1225 ILGLPRTKYGKDSIFVVVDRFSKMARFIPCKKTNDASHVADL 1266
Score = 221 bits (562), Expect(3) = 0.0
Identities = 111/199 (55%), Positives = 141/199 (70%), Gaps = 17/199 (8%)
Frame = +2
Query: 4172 AYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSERVNLDGKKKAEFVKQIHEKARLNI 4351
AYN T HS+T PFE+VY FNPLTPLDL PLP ++ NLDGKKKA+ +K+IHE+ RL I
Sbjct: 1351 AYNRTFHSSTGKTPFEVVYGFNPLTPLDLLPLPTNDFANLDGKKKADMMKKIHEQTRLAI 1410
Query: 4352 E*RTEQYAKQANKGRHKIVFEAEDWVWLHMRKERFPAQRRSKLLPRGDGPFQVLEHINDN 4531
E + ++ A + NKGR ++F+ D VW+HMRKERFP++R++KL PRG GP++VLE I DN
Sbjct: 1411 EKKNKEVALRRNKGRKYVIFKPGDLVWVHMRKERFPSKRKTKLDPRGSGPYKVLERIGDN 1470
Query: 4532 AYKLDLPGEYNVSATFNVSDLSPFDVGDDWRTNPFQEEGNDANHGT-------------- 4669
AYKLDLPGE+ VSATFNVSDLS +D D RTN QEEGND+ G+
Sbjct: 1471 AYKLDLPGEFQVSATFNVSDLSHYDADLDSRTNSLQEEGNDSIQGSSTPLKDKDDALETP 1530
Query: 4670 ---VTRTQANKFKDALSGL 4717
+TR+Q +F D L+GL
Sbjct: 1531 RRPITRSQTKEFNDKLNGL 1549
Score = 129 bits (324), Expect(3) = 0.0
Identities = 59/83 (71%), Positives = 71/83 (85%)
Frame = +3
Query: 3921 FVREIVRLHGMPRTIVPDRDAKFLSYFWKTLWCKLGTKLLFSTTCHPQTDGQMEVVNRTL 4100
FV+E+V+LHG+PRTIV DRDAKFLS+FW+ LW KLGTKLLFST+CHPQTDGQ EVVNRTL
Sbjct: 1267 FVKEVVKLHGIPRTIVSDRDAKFLSHFWRILWGKLGTKLLFSTSCHPQTDGQTEVVNRTL 1326
Query: 4101 STLLWAIIKKNIKTWEECLPHVE 4169
+L AI+K + +WE+ LP VE
Sbjct: 1327 GNMLRAILKGKLTSWEDYLPIVE 1349
Score = 216 bits (551), Expect(2) = e-108
Identities = 110/251 (43%), Positives = 151/251 (60%)
Frame = +2
Query: 1073 DEAKNRVKKEATSHGNQGKSDSSTSRNHDIKCFKCQGRGHIASQCPNKRVMVLRXXXXXX 1252
D K +V+K G + + S+ + I+C KC GRGH+ +CP++R ++LR
Sbjct: 318 DRGKGKVEK-----GGKTFNPKSSKPSSSIQCHKCHGRGHMMHECPSRRNILLRENGEYE 372
Query: 1253 XXXXXXXXFMPPLEDANDKEYAAQGGDLLVARRALSVQAKEDGEVQLENIFHTRCHVQNK 1432
D G + V RR +++ E Q EN+FHTRC ++ K
Sbjct: 373 SEKSEREEEEGEGVSEEDDLELPNDGIIGVVRRIMTINLGSVDEGQRENLFHTRCGIKGK 432
Query: 1433 VCSVIIDGGSCTNVASTIMVEKLGLQTTKHPRPYKLQWLNDSGEVKVNKQVLVSFCIGKY 1612
S+IIDGGSC NV S+ +V+KLG+ K PY+LQWLND GEV+VNKQ ++SF +G+Y
Sbjct: 433 TYSMIIDGGSCANVVSSYLVDKLGIACMKRSTPYRLQWLNDCGEVQVNKQCMISFNVGRY 492
Query: 1613 EDEVLCDVVPMQAGHLLLGRPWQFDRRVKHDGSTNKYSFVLNQRTITLVPLTPKQVHEDQ 1792
EDE+LCDVVPMQA H+LLGRPWQ+DR H G N+YS + N + TL PL+P QV EDQ
Sbjct: 493 EDEILCDVVPMQACHVLLGRPWQYDRDTTHHGRKNRYSLLHNGKKYTLAPLSPSQVFEDQ 552
Query: 1793 VILQKESEKKK 1825
L++ K+K
Sbjct: 553 KRLRETMGKQK 563
Score = 205 bits (522), Expect(2) = e-108
Identities = 105/218 (48%), Positives = 146/218 (66%), Gaps = 2/218 (0%)
Frame = +3
Query: 444 RGARNR-EDNNLSSIKMKIPLFQGKNDPEAYLEWEKKVELVFDCHNYSENKKVKLAAIEF 620
RG R R ED+N++SIKMK+ F+G DP+ YL+WE++VE +FDCHNYSE KKVKLA +EF
Sbjct: 103 RGQRGRVEDDNINSIKMKMSSFKGTRDPDLYLDWERRVEAIFDCHNYSEGKKVKLAVVEF 162
Query: 621 SDYAFVW*DQLVLNRRRNRERPIETWEEMKTVMRKRFVPSYYYRELYNKLQSLKQGNRSX 800
SDYA W +L +R + PI TW EMK VMRKRF+PSY+ R+L ++LQ LKQG+ S
Sbjct: 163 SDYAASWWKKLARDRLQEELPPIATWAEMKRVMRKRFIPSYFQRDLQSRLQRLKQGSMSV 222
Query: 801 XXXXXXXXXXXIRANVEEDREATMSRFLVGLNREIANAVELQHYVELEDMVHMAIKIENQ 980
I+AN E+ EAT++RFL GLN EIAN VE+Q YV L+++V +++K+E Q
Sbjct: 223 DEYFKSMDMAMIQANCMEEEEATIARFLNGLNTEIANVVEIQQYVTLDELVDLSVKVEKQ 282
Query: 981 L-KRRGSTCPSQNPSTSAWKSNHWKKDEKQLMMKPKTE 1091
+ K++ + P+T + K W E + KP+ +
Sbjct: 283 IEKKQQNNSWRSRPNTISKKP--WSTQEGKAPSKPQDD 318
Score = 114 bits (284), Expect = 6e-22
Identities = 57/102 (55%), Positives = 70/102 (68%)
Frame = +3
Query: 1893 ERKTERKTNFYAKASEIKRAMFSNQPMIVLLYKEAYFNANQLNASLPSSVVSLLQDFDDI 2072
E K ++ + Y KA E A P+I+L YKE N QL SLP+SV SLLQ+F+D+
Sbjct: 615 EAKEKKNESLYIKAKECLNARREGLPIILLTYKEILINFEQLTPSLPNSVSSLLQNFEDV 674
Query: 2073 FPKEIPNGLPPIRGIEHQIDFVLGATIPN*PA*RSNPE*TKE 2198
FP + P GLPP+RGIEHQIDFV G+ +PN PA RSNPE TKE
Sbjct: 675 FPDDTPKGLPPLRGIEHQIDFVPGSQLPNRPAYRSNPEETKE 716
>gb|ADP20179.1| gag-pol polyprotein [Silene latifolia]
Length = 1475
Score = 717 bits (1851), Expect(5) = 0.0
Identities = 340/585 (58%), Positives = 446/585 (76%), Gaps = 3/585 (0%)
Frame = +1
Query: 2179 TPSRQRKVIELMEKGYVRENMSPCAVLVILVPKKDRLWRMCVDCRAINNIMVKYRHPIPR 2358
T Q+++ EL+ KG+VRE++SPC+V +LVPKKD WRMC D RAINNI +KYR PIPR
Sbjct: 617 TQELQQQIGELVSKGFVRESLSPCSVPALLVPKKDGSWRMCTDSRAINNITIKYRFPIPR 676
Query: 2359 LDDMLDELHGSCVFSKIDLKSEYHRIRMKEGDEWKTKFKTKYGLYE*LVMPFGLINATST 2538
LDD+LDEL G+ +FSKIDL+ YH++R+KEGDEWKT FKTK+GLYE LVMPFGL NA ST
Sbjct: 677 LDDILDELSGAQLFSKIDLRQGYHQVRIKEGDEWKTAFKTKHGLYEWLVMPFGLSNAPST 736
Query: 2539 FMRLMNHVLRAFIENFVVIYFDDILIYSQNLDDHLMHLKLVLDVLRKEKLFANLKKCTFC 2718
FMRLM VLR ++ FVV+YFDDIL+YS + ++HL HL+++ + LR+ KL+ L+KC+F
Sbjct: 737 FMRLMTEVLRPYLGRFVVVYFDDILVYSPSKEEHLKHLQVLFETLREHKLYGKLEKCSFM 796
Query: 2719 TNKHVFLGFVTSTQGIQVDEEKIHAIQEWPSPTSVSNV*SFHGLASFYRRFVKDFNSIAA 2898
N+ FLGF+ S +GI VD+EK+ AI+ WP P ++++V SFHGLASFYRRF+KDF+++ A
Sbjct: 797 QNEVQFLGFIISDRGILVDQEKVKAIKSWPIPKNITDVRSFHGLASFYRRFIKDFSTLMA 856
Query: 2899 PITKVIKKNAGFKWGEEQEKAFQLIKQKLTHAPLHALPNFAKAFEIDCDALGLGIGVVLI 3078
PIT+ +KK FKWG++ E +F +IK+KL +P+ LPNF K FE++CDA G+GIG VL+
Sbjct: 857 PITECMKKGE-FKWGDKAESSFNIIKEKLCESPILTLPNFNKLFEVECDASGIGIGAVLV 915
Query: 3079 QEGRPLAYFSEKLSGAALNYPTYDKEMYALVRSLETWQYYLWPKEFVIHIDHESLKHLRG 3258
QE +P+AYFSEKLSGA LNY TYDKE YA+VR+L W +YL P+ FV+H DHE+LK++ G
Sbjct: 916 QEHKPIAYFSEKLSGAKLNYSTYDKEFYAIVRALNHWSHYLKPRPFVLHSDHEALKYING 975
Query: 3259 QHKLNKGRARWVEFFETFPYVIQYKQGKENIVADALSRRYILISTLDAKILGFEHIKELY 3438
QHKLN A+WVEF ++F + +Y +GK+NIVADALSRR+I++S ++ ++LGFE++KELY
Sbjct: 976 QHKLNHRHAKWVEFLQSFNFSSKYIEGKDNIVADALSRRFIMLSFMEQRVLGFEYMKELY 1035
Query: 3439 PLDHDFNEEYE---SCEETTNGKYFRHEGFLFRENKLCIPNCSVRDLLVRESHGGGLMGH 3609
D DF E+E S + KY GFLF NKLC+P R+LL+RE H GL GH
Sbjct: 1036 VEDPDFKGEWELLQSGQIKLKSKYLVQNGFLFFGNKLCVPRGPYRNLLIREVHSNGLAGH 1095
Query: 3610 FGVAKTLAILQEHFYWPHMKRDVERICGRCVTCRQAKSRVPPHGLYTPLPIPSTPWIDIS 3789
FG+ KT ILQE FYWP M DV+ + RC C+Q+KS G YTPLP+P+ PW DIS
Sbjct: 1096 FGIQKTYDILQEQFYWPKMLGDVQDVIKRCAPCQQSKSYFQT-GPYTPLPVPNQPWEDIS 1154
Query: 3790 MDFMLGLPRSKRGRDSVFVVVDRFSKMAHFIPCHNMNDASHVADL 3924
MDF++ LPR++RG+DS+ VVVDRFSKMAHFI C DA+ VA+L
Sbjct: 1155 MDFIVALPRTQRGKDSIMVVVDRFSKMAHFIACKKTEDATSVAEL 1199
Score = 183 bits (465), Expect(5) = 0.0
Identities = 96/225 (42%), Positives = 127/225 (56%), Gaps = 2/225 (0%)
Frame = +2
Query: 1163 KCFKCQGRGHIASQCPNKRVMV-LRXXXXXXXXXXXXXXFMPPLEDANDKEYAAQGGDLL 1339
KC++CQG GH A +CP KR + + + D G L
Sbjct: 308 KCYQCQGYGHFAKECPTKRALSSFEVVHWGDDEILVCDEEVEGTDHEEDDVVMPDAGLSL 367
Query: 1340 VARRALSVQAKEDGEVQLENIFHTRCHVQNKVCSVIIDGGSCTNVASTIMVEKLGLQTTK 1519
V R + Q + Q + IF +RC ++ +VC++IIDGGSCTNVAS+ ++EKL L T
Sbjct: 368 VTWRVMHTQPQPLEMDQRQQIFRSRCTIKGRVCNLIIDGGSCTNVASSTLIEKLSLPTQD 427
Query: 1520 HPRPYKLQWLNDSGEVKVNKQVLVSFCIGK-YEDEVLCDVVPMQAGHLLLGRPWQFDRRV 1696
HP PYKL+WLN EV+V+KQ LV+F IGK Y DE LCDV+PM A HLLLGRPW+FDR
Sbjct: 428 HPSPYKLRWLNKGAEVRVDKQCLVTFSIGKNYSDEALCDVLPMDACHLLLGRPWEFDRDS 487
Query: 1697 KHDGSTNKYSFVLNQRTITLVPLTPKQVHEDQVILQKESEKKKMI 1831
H G N Y+F R + L PL P H + + S++ +I
Sbjct: 488 VHHGRDNTYTFKFRSRKVILTPLPPVLKHTTPPSMLEPSKEVLLI 532
Score = 147 bits (371), Expect(5) = 0.0
Identities = 82/182 (45%), Positives = 111/182 (60%), Gaps = 14/182 (7%)
Frame = +2
Query: 4172 AYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSERVNLDGKKKAEFVKQIHEKARLNI 4351
A+N + T PFE+VY NP+ P DL+P+ + ++ D KK+ E + IHE+ + I
Sbjct: 1284 AFNRAPSTTTGKSPFEVVYGVNPMMPTDLAPIKRNT-IDYDAKKRVEQMLHIHEQVKKQI 1342
Query: 4352 E*RTEQYAKQANKGRHKIV-----FEAEDWVWLHMRKERFPAQRRSKLLPRGDGPFQVLE 4516
E A +A+KG+ K V FE D VW+H+RKERFP +R++KL+PR DGPF+VLE
Sbjct: 1343 E-----KANEAHKGKSKGVKGTKSFEPGDLVWIHLRKERFPEKRKNKLMPRADGPFEVLE 1397
Query: 4517 HINDNAYKLDLPGEYNVSATFNVSDLSPF------DVGDDWRTNPFQE---EGNDANHGT 4669
NAYK++LPGEY V TFNV DLSP+ D +D R NPFQE E N G
Sbjct: 1398 KFGSNAYKINLPGEYGVHGTFNVGDLSPYYEEIEEDKLEDLRANPFQEGEIETNQTEKGH 1457
Query: 4670 VT 4675
++
Sbjct: 1458 IS 1459
Score = 100 bits (249), Expect(5) = 0.0
Identities = 43/83 (51%), Positives = 63/83 (75%)
Frame = +3
Query: 3921 FVREIVRLHGMPRTIVPDRDAKFLSYFWKTLWCKLGTKLLFSTTCHPQTDGQMEVVNRTL 4100
+ +E+V+LHG+P++IV DRD+KF+S+FW+TLW L T+LLFST+ HPQTDGQ EV N+TL
Sbjct: 1200 YFKEVVKLHGIPKSIVSDRDSKFMSHFWRTLWKLLKTRLLFSTSHHPQTDGQTEVTNKTL 1259
Query: 4101 STLLWAIIKKNIKTWEECLPHVE 4169
+L + +++K W+ L E
Sbjct: 1260 GRILRCTVARSLKDWDLKLAQAE 1282
Score = 85.5 bits (210), Expect(5) = 0.0
Identities = 41/88 (46%), Positives = 61/88 (69%)
Frame = +3
Query: 1935 SEIKRAMFSNQPMIVLLYKEAYFNANQLNASLPSSVVSLLQDFDDIFPKEIPNGLPPIRG 2114
+E+ + + ++ + L+ K+ F N SLP V LLQ ++D+FP E+P+GLPP+RG
Sbjct: 535 AEMLQELKGDEDVYALIAKDVVFGQN---VSLPKEVQELLQSYEDVFPNELPSGLPPLRG 591
Query: 2115 IEHQIDFVLGATIPN*PA*RSNPE*TKE 2198
IEHQIDF+ GAT+PN A RS+P+ T+E
Sbjct: 592 IEHQIDFIPGATLPNKAAYRSDPKATQE 619
Score = 110 bits (276), Expect = 5e-21
Identities = 54/182 (29%), Positives = 104/182 (57%), Gaps = 1/182 (0%)
Frame = +3
Query: 483 IKMKIPLFQGKNDPEAYLEWEKKVELVFDCHNYSENKKVKLAAIEFSDYAFVW*DQLVLN 662
+K++IP F G +PE L+W + +E VF+ YS+ K K+A ++ YA +W + L
Sbjct: 88 LKVEIPDFHGSLNPEDLLDWFRTIERVFEFKGYSDGKAFKVAILKLKGYASLWYENLKNQ 147
Query: 663 RRRNRERPIETWEEMKTVMRKRFVPSYYYRELYNKLQSLKQGNRSXXXXXXXXXXXXIRA 842
RRR+ + PI++W ++K + ++F+P Y ++++ KL LKQ + ++
Sbjct: 148 RRRDGKEPIKSWLKLKKKLNEKFIPKEYTQDIFIKLTQLKQDQQPLESYLRDFEQLTLQC 207
Query: 843 NVEEDREATMSRFLVGLNREIANAVELQHYVELEDMVHMAIKIENQLKRRGSTC-PSQNP 1019
+ E E ++RF+ GL+ +IA+ V +Q ++ V++A+++E K + +T P+ P
Sbjct: 208 ELNEKPEQKIARFVEGLDTKIAHRVRMQQVWSFDEAVNLALRVEKMGKGKATTTKPTTKP 267
Query: 1020 ST 1025
+T
Sbjct: 268 AT 269
>gb|ABF97027.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 889
Score = 828 bits (2138), Expect(3) = 0.0
Identities = 397/605 (65%), Positives = 484/605 (80%), Gaps = 4/605 (0%)
Frame = +1
Query: 2131 ISCSVP---PFQTDQLKGVTPSRQRKVIELMEKGYVRENMSPCAVLVILVPKKDRLWRMC 2301
+S S+P P++T+ + T QR+V EL++KGYVRE++SPC+V V+LVPKKD WRMC
Sbjct: 55 VSASLPNRAPYRTNPEE--TKEIQRQVQELLDKGYVRESLSPCSVPVLLVPKKDGSWRMC 112
Query: 2302 VDCRAINNIMVKYRHPIPRLDDMLDELHGSCVFSKIDLKSEYHRIRMKEGDEWKTKFKTK 2481
VDCRAINNI ++YRHPIPRLDDMLDEL GS VF KIDL+S YH+IRMK GDEWKT FKTK
Sbjct: 113 VDCRAINNITIRYRHPIPRLDDMLDELSGSLVFCKIDLRSGYHQIRMKLGDEWKTAFKTK 172
Query: 2482 YGLYE*LVMPFGLINATSTFMRLMNHVLRAFIENFVVIYFDDILIYSQNLDDHLMHLKLV 2661
+GLYE LVMPFGL NA STFMRLMN VLRAFI FVV+YFDDILIYS++++DH HL+ V
Sbjct: 173 FGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGRFVVVYFDDILIYSRSIEDHHGHLRAV 232
Query: 2662 LDVLRKEKLFANLKKCTFCTNKHVFLGFVTSTQGIQVDEEKIHAIQEWPSPTSVSNV*SF 2841
D LR +LF NL+KCTFCT++ FLG+V + QGI+VD+ K+ AI WP PT+++ V SF
Sbjct: 233 FDALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIHSWPVPTTITQVRSF 292
Query: 2842 HGLASFYRRFVKDFNSIAAPITKVIKKNAGFKWGEEQEKAFQLIKQKLTHAPLHALPNFA 3021
GLA FYR FVKDF++IAAP+ ++ K+N F W Q AF +K KLTHAPL LP+F
Sbjct: 293 LGLAGFYRHFVKDFSTIAAPLHELTKRNVTFTWAAAQRNAFDTLKDKLTHAPLLQLPDFN 352
Query: 3022 KAFEIDCDALGLGIGVVLIQEGRPLAYFSEKLSGAALNYPTYDKEMYALVRSLETWQYYL 3201
K FE++CDA G+G+G VL+QEG+P+AYFSEKLSG +LNY TYDKE++ALVR+LETWQ+YL
Sbjct: 353 KTFELECDASGIGLGGVLLQEGKPVAYFSEKLSGPSLNYSTYDKELFALVRTLETWQHYL 412
Query: 3202 WPKEFVIHIDHESLKHLRGQHKLNKGRARWVEFFETFPYVIQYKQGKENIVADALSRRYI 3381
WPKEFVIH DHESLKH+R Q KLN+ A+WVEF E+FPYVI++K+GKEN++ADALSRRY
Sbjct: 413 WPKEFVIHSDHESLKHIRSQAKLNRRHAKWVEFIESFPYVIKHKKGKENVIADALSRRYA 472
Query: 3382 LISTLDAKILGFEHIKELYPLDHDFNEEYESC-EETTNGKYFRHEGFLFRENKLCIPNCS 3558
++S LD KI G E IKE Y D DF + +C E T K+ GF+FR NKLCIP S
Sbjct: 473 MLSQLDFKIFGLETIKEQYAHDDDFKDVLLNCMEGRTWNKFVLTNGFVFRANKLCIPASS 532
Query: 3559 VRDLLVRESHGGGLMGHFGVAKTLAILQEHFYWPHMKRDVERICGRCVTCRQAKSRVPPH 3738
VR LL++E+HGGGLMGHFGV KT IL +HF+WP M+RDVER RC TC++AKSR+ PH
Sbjct: 533 VRMLLLQEAHGGGLMGHFGVKKTEDILADHFFWPKMRRDVERFVARCTTCQKAKSRLNPH 592
Query: 3739 GLYTPLPIPSTPWIDISMDFMLGLPRSKRGRDSVFVVVDRFSKMAHFIPCHNMNDASHVA 3918
GLY PLP+PS PW DISMDF+LGLPR+K+GRDS+FVVVDRFSKMAHFIPCH +DA+HVA
Sbjct: 593 GLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDATHVA 652
Query: 3919 DLLGR 3933
DL R
Sbjct: 653 DLFFR 657
Score = 152 bits (384), Expect(3) = 0.0
Identities = 74/135 (54%), Positives = 93/135 (68%)
Frame = +2
Query: 4172 AYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSERVNLDGKKKAEFVKQIHEKARLNI 4351
AYN + HS TK PFEIVY P P+DL PLP SERVN D K +AE + ++HE + NI
Sbjct: 739 AYNHSQHSTTKKCPFEIVYGLLPRAPIDLLPLPTSERVNFDAKHRAELMLKLHETTKENI 798
Query: 4352 E*RTEQYAKQANKGRHKIVFEAEDWVWLHMRKERFPAQRRSKLLPRGDGPFQVLEHINDN 4531
E +Y +KG+ + FE D VWLH+RK+RFP R+SKL PR DGPF+VL+ INDN
Sbjct: 799 ERMNIKYKLAGSKGKKHVAFEPGDLVWLHLRKDRFPNLRKSKLQPRADGPFKVLQKINDN 858
Query: 4532 AYKLDLPGEYNVSAT 4576
AYKL+LP ++ VS T
Sbjct: 859 AYKLELPADFGVSPT 873
Score = 151 bits (382), Expect(3) = 0.0
Identities = 69/83 (83%), Positives = 75/83 (90%)
Frame = +3
Query: 3921 FVREIVRLHGMPRTIVPDRDAKFLSYFWKTLWCKLGTKLLFSTTCHPQTDGQMEVVNRTL 4100
F REIVRLHG+P TIV DRD KFLS+FW+TLW KLGTKLLFSTTCHPQTDGQ EVVNRTL
Sbjct: 655 FFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRTL 714
Query: 4101 STLLWAIIKKNIKTWEECLPHVE 4169
ST+L A++KKNIK WEECLPHVE
Sbjct: 715 STMLRAVLKKNIKMWEECLPHVE 737
>emb|CAN74973.1| hypothetical protein VITISV_001042 [Vitis vinifera]
Length = 1281
Score = 704 bits (1817), Expect(4) = 0.0
Identities = 353/585 (60%), Positives = 418/585 (71%)
Frame = +1
Query: 2179 TPSRQRKVIELMEKGYVRENMSPCAVLVILVPKKDRLWRMCVDCRAINNIMVKYRHPIPR 2358
T QR+V L+ KG+VRE++SPC V V LV KKD WRMCVD R INNI VKYRHPIPR
Sbjct: 517 TKELQRQVEXLLTKGHVRESLSPCVVXVXLVXKKDGTWRMCVDXRXINNITVKYRHPIPR 576
Query: 2359 LDDMLDELHGSCVFSKIDLKSEYHRIRMKEGDEWKTKFKTKYGLYE*LVMPFGLINATST 2538
LDDMLDELHGSCVF+KIDLKS YH+IRMKEGDEWKT FKTKYGLYE LVMPFGL NA ST
Sbjct: 577 LDDMLDELHGSCVFTKIDLKSGYHQIRMKEGDEWKTAFKTKYGLYEWLVMPFGLTNAPST 636
Query: 2539 FMRLMNHVLRAFIENFVVIYFDDILIYSQNLDDHLMHLKLVLDVLRKEKLFANLKKCTFC 2718
FMRLMNH LR+FI FVV+YFDDIL+YS+NLD+++ HL C
Sbjct: 637 FMRLMNHALRSFISRFVVVYFDDILVYSKNLDEYINHLH--------------------C 676
Query: 2719 TNKHVFLGFVTSTQGIQVDEEKIHAIQEWPSPTSVSNV*SFHGLASFYRRFVKDFNSIAA 2898
FL + + ++ W SFYR FVKDF+++A
Sbjct: 677 VLALCFLVMLLVXKELR-----------WMRK-------------SFYRXFVKDFSTLAV 712
Query: 2899 PITKVIKKNAGFKWGEEQEKAFQLIKQKLTHAPLHALPNFAKAFEIDCDALGLGIGVVLI 3078
P+T+++KK GFKWG ++AF IK+ L GI +L+
Sbjct: 713 PLTEIVKKFVGFKWGSXXDRAFIXIKEMLC-----------------------GIRAILM 749
Query: 3079 QEGRPLAYFSEKLSGAALNYPTYDKEMYALVRSLETWQYYLWPKEFVIHIDHESLKHLRG 3258
QE RP+ YFSEKL+G LNYPTYDKE+YALVR+LETWQ+YLWPKEFVIH DHESLKHL+G
Sbjct: 750 QEKRPITYFSEKLNGTTLNYPTYDKELYALVRALETWQHYLWPKEFVIHTDHESLKHLKG 809
Query: 3259 QHKLNKGRARWVEFFETFPYVIQYKQGKENIVADALSRRYILISTLDAKILGFEHIKELY 3438
Q KLN+ A+WVEF ETF YVI+YKQGKENIVADALSRRY L+STL+AK+LGFE++KELY
Sbjct: 810 QGKLNRRHAKWVEFIETFLYVIKYKQGKENIVADALSRRYALVSTLNAKLLGFEYVKELY 869
Query: 3439 PLDHDFNEEYESCEETTNGKYFRHEGFLFRENKLCIPNCSVRDLLVRESHGGGLMGHFGV 3618
D DF Y +CE+TT EN+LC+PN S+R+LLVRE+HGGGLMGHFGV
Sbjct: 870 ANDDDFASVYGACEKTT------------FENRLCVPNSSMRELLVREAHGGGLMGHFGV 917
Query: 3619 AKTLAILQEHFYWPHMKRDVERICGRCVTCRQAKSRVPPHGLYTPLPIPSTPWIDISMDF 3798
KTL +L EHF+WP MK DVER C RC+TCRQAKSRV PHGLYTPLP+PS PW+DISMDF
Sbjct: 918 RKTLDVLHEHFFWPKMKCDVERACARCITCRQAKSRVLPHGLYTPLPVPSAPWVDISMDF 977
Query: 3799 MLGLPRSKRGRDSVFVVVDRFSKMAHFIPCHNMNDASHVADLLGR 3933
+LGLPRS+ GR S+FVVVDRFSKM +FI CH ++DA+H+A+L R
Sbjct: 978 VLGLPRSRNGRXSIFVVVDRFSKMTYFISCHKIDDATHIANLFFR 1022
Score = 257 bits (657), Expect(4) = 0.0
Identities = 121/196 (61%), Positives = 150/196 (76%), Gaps = 11/196 (5%)
Frame = +2
Query: 4187 IHSATKFLPFEIVYCFNPLTPLDLSPLPMSERVNLDGKKKAEFVKQIHEKARLNIE*RTE 4366
+HS T F PFEIVY FNPLT LDL PL ++E +LDG+KK E VK++HE R +IE + E
Sbjct: 1083 VHSTTNFSPFEIVYGFNPLTSLDLLPLXVNEMXSLDGEKKVEMVKKLHESVRKHIEKKNE 1142
Query: 4367 QYAKQANKGRHKIVFEAEDWVWLHMRKERFPAQRRSKLLPRGDGPFQVLEHINDNAYKLD 4546
QY +ANKG +++FE DWVW+HMRKERFP +R SKL PRGDGPFQVLE INDNAYKLD
Sbjct: 1143 QYVSKANKGXXQVLFEPGDWVWVHMRKERFPTRRXSKLHPRGDGPFQVLERINDNAYKLD 1202
Query: 4547 LPGEYNVSATFNVSDLSPFDVGDDWRTNPFQEEGNDANH-----------GTVTRTQANK 4693
+PGEYN+SATFNVSDLSPFDVGDD TNPF+E+GND N G +T+ ++ K
Sbjct: 1203 IPGEYNISATFNVSDLSPFDVGDDSXTNPFEEKGNDENQQAFKDPLHVLVGPITKARSKK 1262
Query: 4694 FKDALSGLIQKVWNQT 4741
K+AL+GLIQ++W ++
Sbjct: 1263 IKEALNGLIQEIWTKS 1278
Score = 116 bits (290), Expect(4) = 0.0
Identities = 54/64 (84%), Positives = 57/64 (89%)
Frame = +3
Query: 3921 FVREIVRLHGMPRTIVPDRDAKFLSYFWKTLWCKLGTKLLFSTTCHPQTDGQMEVVNRTL 4100
F REIVRLHG+PR+IV DRD KFLSYFWK LW KLGTKLLFSTTCHPQTDGQ EVVNRTL
Sbjct: 1020 FFREIVRLHGVPRSIVSDRDVKFLSYFWKVLWRKLGTKLLFSTTCHPQTDGQTEVVNRTL 1079
Query: 4101 STLL 4112
ST +
Sbjct: 1080 STFV 1083
Score = 72.4 bits (176), Expect(4) = 0.0
Identities = 34/60 (56%), Positives = 46/60 (76%)
Frame = +3
Query: 2019 NASLPSSVVSLLQDFDDIFPKEIPNGLPPIRGIEHQIDFVLGATIPN*PA*RSNPE*TKE 2198
N ++ +++ Q+++D+FP ++P+GLPPIRGIE QIDFV ATIPN A RSNPE TKE
Sbjct: 460 NKTITLVLLTPRQEYEDVFPNDVPSGLPPIRGIEXQIDFVSXATIPNRXAYRSNPEETKE 519
Score = 255 bits (652), Expect(2) = e-101
Identities = 138/237 (58%), Positives = 162/237 (68%), Gaps = 1/237 (0%)
Frame = +3
Query: 399 EGEDSTGSPRKFGRVRGARNREDNNLSSIKMKIPLFQGKNDPEAYLEWEKKVELVFDCHN 578
E E+ S GR ++ D NL +IKMKIPLFQGKNDP+ YLEWEKKVE +F+CHN
Sbjct: 83 EDEEDQASLNHXGRAPRWQBGIDRNLGNIKMKIPLFQGKNDPKVYLEWEKKVEFIFECHN 142
Query: 579 YSENKKVKLAAIEFSDYAFVW*DQLVLNRRRNRERPIETWEEMKTVMRKRFVPSYYYREL 758
YSE K VKL IEF+DYA +W DQLV+NRRRN ERPIETWEEMK MR+ FVPS+YYR+L
Sbjct: 143 YSEEKNVKLVVIEFTDYAIIWWDQLVMNRRRNYERPIETWEEMKATMRRWFVPSHYYRDL 202
Query: 759 YNKLQSLKQGNRSXXXXXXXXXXXXIRANVEEDREATMSRFLVGLNREIANAVELQHYVE 938
Y KL SL G RS IRANVEEDREATM+RFL GLN++IAN VELQHYVE
Sbjct: 203 YQKLXSLTXGYRSMDDYHKEMEIAMIRANVEEDREATMARFLNGLNQDIANVVELQHYVE 262
Query: 939 LEDMVHMAIKIENQLKRRGSTCPSQNPSTSA-WKSNHWKKDEKQLMMKPKTE*KKKQ 1106
LEDM +T QNPS+SA W+ N +KDE ++ K KTE K++
Sbjct: 263 LEDM--------------ETTRSFQNPSSSASWRPNR-RKDE-GVVFKSKTEPPKRR 303
Score = 145 bits (365), Expect(2) = e-101
Identities = 94/233 (40%), Positives = 121/233 (51%), Gaps = 1/233 (0%)
Frame = +2
Query: 1094 KKEATSHGNQGKSDSSTSRNHDIKCFKCQGRGHIASQCPNKRVMVLRXXXXXXXXXXXXX 1273
+++ + N+GK++S T RN DIKCF+C G GHIASQCPNK M++R
Sbjct: 302 RRDEAPNVNKGKNESQT-RNRDIKCFRCLGVGHIASQCPNKMTMIVRVDEEMETESKEDD 360
Query: 1274 XFMPPLEDANDKEYAAQGGDLLVARRALSVQAKEDGEVQLENI-FHTRCHVQNKVCSVII 1450
MP LEDA D ++ E L+ + ++ + + I+
Sbjct: 361 DQMPSLEDACD----------------------DNVEYPLKRMTWNNKWRI-----FFIL 393
Query: 1451 DGGSCTNVASTIMVEKLGLQTTKHPRPYKLQWLNDSGEVKVNKQVLVSFCIGKYEDEVLC 1630
D T+ ST +VEKL L T KHPRPYKLQWLND GEVKVNKQVLV F IG
Sbjct: 394 DA---TSTISTTLVEKLNLPTLKHPRPYKLQWLNDCGEVKVNKQVLVYFSIG-------- 442
Query: 1631 DVVPMQAGHLLLGRPWQFDRRVKHDGSTNKYSFVLNQRTITLVPLTPKQVHED 1789
R+V HDG N+YSFV + +TITLV LTP+Q +ED
Sbjct: 443 -------------------RKVNHDGFKNRYSFVKDNKTITLVLLTPRQEYED 476
>emb|CAN80356.1| hypothetical protein VITISV_003506 [Vitis vinifera]
Length = 960
Score = 837 bits (2161), Expect(3) = 0.0
Identities = 398/585 (68%), Positives = 478/585 (81%)
Frame = +1
Query: 2179 TPSRQRKVIELMEKGYVRENMSPCAVLVILVPKKDRLWRMCVDCRAINNIMVKYRHPIPR 2358
T QR+V EL+ KG+VRE+M PCA+LV+LVPKKD WRMCVDCRAINNI VKYRHPIPR
Sbjct: 211 TKELQRQVEELLTKGHVRESMRPCAILVLLVPKKDGTWRMCVDCRAINNITVKYRHPIPR 270
Query: 2359 LDDMLDELHGSCVFSKIDLKSEYHRIRMKEGDEWKTKFKTKYGLYE*LVMPFGLINATST 2538
LDDMLDELHGSCVF KIDLKS YH+IRMKEGDEWKT FKTKYGLYE LVMPFGL NA ST
Sbjct: 271 LDDMLDELHGSCVFIKIDLKSGYHQIRMKEGDEWKTAFKTKYGLYEWLVMPFGLTNALST 330
Query: 2539 FMRLMNHVLRAFIENFVVIYFDDILIYSQNLDDHLMHLKLVLDVLRKEKLFANLKKCTFC 2718
FMRLMNHVLRAFI FVV+YFDDIL+YS+NLD+H+ HL VL +LRKEKL+ANLKKC+FC
Sbjct: 331 FMRLMNHVLRAFIGRFVVVYFDDILVYSKNLDEHINHLHCVLAILRKEKLYANLKKCSFC 390
Query: 2719 TNKHVFLGFVTSTQGIQVDEEKIHAIQEWPSPTSVSNV*SFHGLASFYRRFVKDFNSIAA 2898
+K VFLG+V S +GI+VDEEK+ AI+EWP+P S++ V SFHGLASFY RFVKDF+++AA
Sbjct: 391 MDKVVFLGYVVSAKGIEVDEEKLKAIKEWPTPKSITEVRSFHGLASFYFRFVKDFSTLAA 450
Query: 2899 PITKVIKKNAGFKWGEEQEKAFQLIKQKLTHAPLHALPNFAKAFEIDCDALGLGIGVVLI 3078
P+T+++KK+ GFKWG EQ++AF IK++L APL +LPNF+K FEI+CDA G+GI VL+
Sbjct: 451 PLTEIVKKSVGFKWGSEQDRAFIEIKERLCGAPLLSLPNFSKTFEIECDASGIGIATVLM 510
Query: 3079 QEGRPLAYFSEKLSGAALNYPTYDKEMYALVRSLETWQYYLWPKEFVIHIDHESLKHLRG 3258
QE RP+AYFSEKL+GA LNYPTYDKE+YAL HL+G
Sbjct: 511 QEKRPIAYFSEKLNGATLNYPTYDKELYAL--------------------------HLKG 544
Query: 3259 QHKLNKGRARWVEFFETFPYVIQYKQGKENIVADALSRRYILISTLDAKILGFEHIKELY 3438
Q KLN+ A+WVEF ETFPYV++YKQGKENIV +ALSRRY L+STL+AK+LGFE++KELY
Sbjct: 545 QDKLNRRHAKWVEFIETFPYVVKYKQGKENIVVNALSRRYALVSTLNAKLLGFEYVKELY 604
Query: 3439 PLDHDFNEEYESCEETTNGKYFRHEGFLFRENKLCIPNCSVRDLLVRESHGGGLMGHFGV 3618
D+DF Y +CE+ GK++R +G+LFREN+LC+PN S+ +LLV E+HGGGLMGHFGV
Sbjct: 605 ANDNDFASLYGACEKAAFGKFYRLDGYLFRENRLCVPNSSMCELLVHEAHGGGLMGHFGV 664
Query: 3619 AKTLAILQEHFYWPHMKRDVERICGRCVTCRQAKSRVPPHGLYTPLPIPSTPWIDISMDF 3798
+TL +L EHF+WP MKRDVER C RC+T RQAKSRV PH LYTPL + S W+DISMDF
Sbjct: 665 RRTLDVLYEHFFWPKMKRDVERACARCITYRQAKSRVLPHRLYTPLLVSSASWVDISMDF 724
Query: 3799 MLGLPRSKRGRDSVFVVVDRFSKMAHFIPCHNMNDASHVADLLGR 3933
+LGLPRS+ GRDS+FVVVDRFSKMAHFI CH +DA+H+A+L R
Sbjct: 725 VLGLPRSRNGRDSIFVVVDRFSKMAHFISCHKADDATHIANLFFR 769
Score = 97.4 bits (241), Expect(3) = 0.0
Identities = 44/62 (70%), Positives = 50/62 (80%)
Frame = +3
Query: 3921 FVREIVRLHGMPRTIVPDRDAKFLSYFWKTLWCKLGTKLLFSTTCHPQTDGQMEVVNRTL 4100
F REIVRLHG+PR+IV D+D KFLSYFWK W KLGTKLLFSTTC PQTDGQ ++ N
Sbjct: 767 FFREIVRLHGVPRSIVSDQDVKFLSYFWKVFWRKLGTKLLFSTTCPPQTDGQTKIKNEQY 826
Query: 4101 ST 4106
+T
Sbjct: 827 AT 828
Score = 72.0 bits (175), Expect(3) = 0.0
Identities = 33/49 (67%), Positives = 42/49 (85%)
Frame = +3
Query: 2052 LQDFDDIFPKEIPNGLPPIRGIEHQIDFVLGATIPN*PA*RSNPE*TKE 2198
+++++D+FP ++P+GLPPIRGIEHQIDFV GATIPN A RSN E TKE
Sbjct: 165 VKEYEDVFPNDVPSGLPPIRGIEHQIDFVPGATIPNRLAYRSNLEETKE 213
Score = 145 bits (366), Expect = 2e-31
Identities = 83/142 (58%), Positives = 92/142 (64%), Gaps = 8/142 (5%)
Frame = +2
Query: 1184 RGHIASQCPNKRVMVLRXXXXXXXXXXXXXXFMPPLEDANDK--EYAAQGGDLLVARRAL 1357
+G IASQCPNKR M+ R M LEDA D EY +G + LVARR L
Sbjct: 31 KGRIASQCPNKRTMITRVDGEVETESEEDDDQMASLEDACDDNVEYPMEG-ESLVARRXL 89
Query: 1358 SVQAKEDG-EVQLENIFHTRCHVQNKVCSVIIDGG-----SCTNVASTIMVEKLGLQTTK 1519
S Q KED E Q ENIFHTRCH+ NKVCS+IIDGG SCTNVAST +VE L L T K
Sbjct: 90 SAQVKEDDMEQQRENIFHTRCHINNKVCSMIIDGGVGEGRSCTNVASTTLVEILNLPTLK 149
Query: 1520 HPRPYKLQWLNDSGEVKVNKQV 1585
HP+PYKLQWLND GEVK + V
Sbjct: 150 HPKPYKLQWLNDCGEVKEYEDV 171
Score = 142 bits (357), Expect = 2e-30
Identities = 72/136 (52%), Positives = 86/136 (63%), Gaps = 11/136 (8%)
Frame = +2
Query: 4358 RTEQYAKQANKGRHKIVFEAEDWVWLHMRKERFPAQRRSKLLPRGDGPFQVLEHINDNAY 4537
+ EQYA +ANKGR +++FE DWVW+HMRKERFP RR KL PRGDGPFQVLE INDNAY
Sbjct: 822 KNEQYATKANKGRRQVLFEPGDWVWVHMRKERFPICRRFKLHPRGDGPFQVLERINDNAY 881
Query: 4538 KLDLPGEYNVSATFNVSDLSPFDVGDDWRTNPFQEEGNDANH-----------GTVTRTQ 4684
KLDLP GDD RTNP +E GND N G +T+ +
Sbjct: 882 KLDLP-------------------GDDSRTNPLEERGNDENQQAFKDPLHVLVGPITKAR 922
Query: 4685 ANKFKDALSGLIQKVW 4732
+ K K+AL+GLIQ +W
Sbjct: 923 SKKIKEALNGLIQDIW 938
>gb|ADP20178.1| gag-pol polyprotein [Silene latifolia]
Length = 1518
Score = 712 bits (1838), Expect(3) = 0.0
Identities = 342/596 (57%), Positives = 446/596 (74%), Gaps = 3/596 (0%)
Frame = +1
Query: 2146 PPFQTDQLKGVTPSRQRKVIELMEKGYVRENMSPCAVLVILVPKKDRLWRMCVDCRAINN 2325
P ++ D T Q ++ ELM KG+VRE++SPCAV +LVPKKD WRMC D RAINN
Sbjct: 620 PAYRCDP--NATKELQHQIEELMAKGFVRESLSPCAVPALLVPKKDGTWRMCTDSRAINN 677
Query: 2326 IMVKYRHPIPRLDDMLDELHGSCVFSKIDLKSEYHRIRMKEGDEWKTKFKTKYGLYE*LV 2505
I VKYR PIPRLDDMLDEL G+ +FSKIDL+ YH++R++EGDEWKT FKTK+GLYE LV
Sbjct: 678 ITVKYRFPIPRLDDMLDELSGASIFSKIDLRQGYHQVRIREGDEWKTAFKTKHGLYEWLV 737
Query: 2506 MPFGLINATSTFMRLMNHVLRAFIENFVVIYFDDILIYSQNLDDHLMHLKLVLDVLRKEK 2685
MPFGL NA STFMRLM VLR + F V+YFDDIL+YS+ +HL HL++V +LR++K
Sbjct: 738 MPFGLSNAPSTFMRLMTEVLRPCLGKFAVVYFDDILVYSKTKGEHLKHLEVVFKILREQK 797
Query: 2686 LFANLKKCTFCTNKHVFLGFVTSTQGIQVDEEKIHAIQEWPSPTSVSNV*SFHGLASFYR 2865
L+ L+KCTF + FLG++ S +GI VD+E I A+Q WP+PT+V+ V SFHGLASFYR
Sbjct: 798 LYGKLEKCTFMVEEVAFLGYLISGRGISVDQENIAAMQSWPTPTTVTEVRSFHGLASFYR 857
Query: 2866 RFVKDFNSIAAPITKVIKKNAGFKWGEEQEKAFQLIKQKLTHAPLHALPNFAKAFEIDCD 3045
RF+K+F+++ APIT+ ++K F+W E+ +++F+ IKQ + + P+ LP+F + FE++CD
Sbjct: 858 RFIKNFSTVVAPITECMRKGE-FQWTEQAQQSFEKIKQLMCNTPILKLPDFDQLFEVECD 916
Query: 3046 ALGLGIGVVLIQEGRPLAYFSEKLSGAALNYPTYDKEMYALVRSLETWQYYLWPKEFVIH 3225
A G+GIG VLIQ +P+AYFSEKL+GA L Y TYDKE YA++R+L W +YL PK FV+H
Sbjct: 917 ASGVGIGAVLIQSQKPVAYFSEKLNGAKLKYSTYDKEFYAIIRALMHWNHYLKPKPFVLH 976
Query: 3226 IDHESLKHLRGQHKLNKGRARWVEFFETFPYVIQYKQGKENIVADALSRRYILISTLDAK 3405
DHE+LK++ GQHKLN A+WVEF ++F + +YK+GK+N+VADALSRR+ L+S + +
Sbjct: 977 SDHEALKYINGQHKLNFRHAKWVEFLQSFTFSSKYKEGKKNVVADALSRRHSLLSVMSNR 1036
Query: 3406 ILGFEHIKELYPLDHDFNEEYESCEE---TTNGKYFRHEGFLFRENKLCIPNCSVRDLLV 3576
+LGFE +KELY D DF+EE+ + E KY EGFLF+ NKLC+P S RDLL+
Sbjct: 1037 VLGFEFMKELYKEDPDFSEEWITQTEGHKNQGSKYLLQEGFLFQGNKLCVPRGSYRDLLI 1096
Query: 3577 RESHGGGLMGHFGVAKTLAILQEHFYWPHMKRDVERICGRCVTCRQAKSRVPPHGLYTPL 3756
RE H GG+ GHFGV KTL ILQ+ FYWP M DV+ I RC C+ +KS P G YTPL
Sbjct: 1097 REVHSGGMGGHFGVQKTLEILQDQFYWPRMMGDVQIILRRCSKCQLSKSSFQP-GPYTPL 1155
Query: 3757 PIPSTPWIDISMDFMLGLPRSKRGRDSVFVVVDRFSKMAHFIPCHNMNDASHVADL 3924
P+PS PW D+SMDF++ LPR++RG+DSV VVVDRFSKMAHF+ C DA VA+L
Sbjct: 1156 PVPSKPWEDLSMDFIVALPRTQRGKDSVMVVVDRFSKMAHFVACKKTEDAVSVAEL 1211
Score = 162 bits (411), Expect(3) = 0.0
Identities = 86/168 (51%), Positives = 111/168 (66%), Gaps = 6/168 (3%)
Frame = +2
Query: 4172 AYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSERVNLDGKKKAEFVKQIHEKARLNI 4351
A+N +AT PFE+VY NPL PLDLS +P E +NLD K+AE + ++HE + I
Sbjct: 1296 AFNRAPSTATGHSPFEVVYGVNPLMPLDLSSVP-KENINLDAMKRAEQLLKLHETVKRQI 1354
Query: 4352 E*RTEQYAKQANKGRHKIVFEAEDWVWLHMRKERFPAQRRSKLLPRGDGPFQVLEHINDN 4531
E EQY K + K FE D VW+H+RKERFPA+R++KL+PR DGPF+V+E I +
Sbjct: 1355 ERTNEQYQKHLKVPKGKKEFEPGDLVWIHLRKERFPAKRKNKLMPRSDGPFEVVEKIGPS 1414
Query: 4532 AYKLDLPGEYNVSATFNVSDLSPF--DVGDD----WRTNPFQEEGNDA 4657
AYK+DLPG+Y V TFNV DLSP+ D GD+ RT+P Q G DA
Sbjct: 1415 AYKIDLPGDYGVHGTFNVGDLSPYYEDSGDEEVTGLRTSPVQPGGVDA 1462
Score = 110 bits (276), Expect(3) = 0.0
Identities = 49/76 (64%), Positives = 61/76 (80%)
Frame = +3
Query: 3921 FVREIVRLHGMPRTIVPDRDAKFLSYFWKTLWCKLGTKLLFSTTCHPQTDGQMEVVNRTL 4100
F++EIVRLHG+P+TIV DRD KF+ YFWKTLW L TKLLFST+ HPQTDGQ EV NRTL
Sbjct: 1212 FLKEIVRLHGVPKTIVSDRDTKFMGYFWKTLWKLLKTKLLFSTSHHPQTDGQTEVTNRTL 1271
Query: 4101 STLLWAIIKKNIKTWE 4148
+L ++ K++K W+
Sbjct: 1272 GRILRCLVSKSLKDWD 1287
Score = 174 bits (441), Expect(2) = 6e-66
Identities = 100/219 (45%), Positives = 126/219 (57%), Gaps = 13/219 (5%)
Frame = +2
Query: 1160 IKCFKCQGRGHIASQCPNKRVMVLRXXXXXXXXXXXXXXFMPPL---EDANDKEYAAQ-- 1324
IKCF+CQG GH CP+ R + L E ++KE +
Sbjct: 309 IKCFQCQGFGHFRKDCPSARTLTAIEVAEWEREGLVEYEEDEALVLEEVESEKETSPDQI 368
Query: 1325 ------GGDLLVARRALSVQAKEDGEVQLENIFHTRCHVQNKVCSVIIDGGSCTNVASTI 1486
G L + R S QA + + Q IF +RC VQ +VC++II+GGSCTNVAST
Sbjct: 369 VAHPDTGHSLFLWRVMHSQQAPLEAD-QRSMIFRSRCTVQGRVCNLIINGGSCTNVASTT 427
Query: 1487 MVEKLGLQTTKHPRPYKLQWLNDSGEVKVNKQVLVSFCIGK-YEDEVLCD-VVPMQAGHL 1660
MV KLGL T +HP PYKL+WL+ V+V+KQ ++SF IGK Y+DEVLCD VVPM A HL
Sbjct: 428 MVSKLGLPTQEHPNPYKLRWLSKDSGVRVDKQCIISFSIGKMYKDEVLCDVVVPMDACHL 487
Query: 1661 LLGRPWQFDRRVKHDGSTNKYSFVLNQRTITLVPLTPKQ 1777
LLGRPW++DR H G N Y F + +TL PL P Q
Sbjct: 488 LLGRPWEYDRNTTHQGKDNVYIFKHQGKKVTLTPLPPNQ 526
Score = 107 bits (268), Expect(2) = 6e-66
Identities = 61/217 (28%), Positives = 110/217 (50%)
Frame = +3
Query: 483 IKMKIPLFQGKNDPEAYLEWEKKVELVFDCHNYSENKKVKLAAIEFSDYAFVW*DQLVLN 662
IK++IP F G +P+ LEW + VE +F+ NY++ K K+A ++ YA +W D L
Sbjct: 90 IKVEIPEFSGSLNPDDLLEWIRDVEKIFEYKNYNDVKACKVAVLKLKGYASLWYDNLKHQ 149
Query: 663 RRRNRERPIETWEEMKTVMRKRFVPSYYYRELYNKLQSLKQGNRSXXXXXXXXXXXXIRA 842
R + + P+ +W ++K M +FV Y ++L+ KL +LKQ ++ ++
Sbjct: 150 RLKEGKDPLRSWSKLKKKMLAKFVTKDYTQDLFIKLSNLKQKEKTVEAYLREFEQLTLQC 209
Query: 843 NVEEDREATMSRFLVGLNREIANAVELQHYVELEDMVHMAIKIENQLKRRGSTCPSQNPS 1022
+ E E ++RFL GL++ IA V +Q +D+V++++++E + G T P
Sbjct: 210 EINEKSEQRIARFLEGLDKNIAAEVRMQPLWSYDDVVNLSLRVE----KMGKTKPVATRP 265
Query: 1023 TSAWKSNHWKKDEKQLMMKPKTE*KKKQPAMEIKVNP 1133
++ K P++ K + M K+NP
Sbjct: 266 KPVFRPYSSVKINDPPKTTPQSTVDKGKAPMNPKINP 302
Score = 78.6 bits (192), Expect = 3e-11
Identities = 41/91 (45%), Positives = 60/91 (65%)
Frame = +3
Query: 1926 AKASEIKRAMFSNQPMIVLLYKEAYFNANQLNASLPSSVVSLLQDFDDIFPKEIPNGLPP 2105
A EI++A QP+++LL +E + N +P++V L+Q F ++FP E+P+GLPP
Sbjct: 548 AMIKEIRQA----QPVLMLLSREVN---QEENTVVPTAVAPLIQRFQEVFPDELPSGLPP 600
Query: 2106 IRGIEHQIDFVLGATIPN*PA*RSNPE*TKE 2198
+RGIEH ID V G+ +PN PA R +P TKE
Sbjct: 601 LRGIEHHIDLVPGSVLPNKPAYRCDPNATKE 631