BLASTX nr result
ID: Akebia22_contig00010624
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Akebia22_contig00010624
(753 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABK26380.1| unknown [Picea sitchensis] 247 4e-63
dbj|BAD54456.1| putative RNA polymerase I, II and III 16.5 kDa s... 234 2e-59
gb|EAZ02226.1| hypothetical protein OsI_24321 [Oryza sativa Indi... 234 2e-59
ref|XP_006656427.1| PREDICTED: DNA-directed RNA polymerases II, ... 233 4e-59
ref|XP_006665034.1| PREDICTED: DNA-directed RNA polymerases II, ... 232 9e-59
ref|XP_004234478.1| PREDICTED: DNA-directed RNA polymerases I, I... 229 1e-57
ref|XP_006343291.1| PREDICTED: DNA-directed RNA polymerases II, ... 228 1e-57
ref|NP_001051880.1| Os03g0845700 [Oryza sativa Japonica Group] g... 223 6e-56
ref|XP_003580476.1| PREDICTED: DNA-directed RNA polymerases I, I... 223 6e-56
ref|XP_002466106.1| hypothetical protein SORBIDRAFT_01g001330 [S... 223 6e-56
gb|EEC76521.1| hypothetical protein OsI_14307 [Oryza sativa Indi... 223 6e-56
ref|XP_006442881.1| hypothetical protein CICLE_v10022723mg [Citr... 222 1e-55
ref|NP_001147399.1| LOC100281008 [Zea mays] gi|194699730|gb|ACF8... 221 2e-55
ref|XP_002530308.1| DNA-directed RNA polymerases I, II, and III ... 221 2e-55
gb|EMT09070.1| DNA-directed RNA polymerases I, II, and III subun... 221 3e-55
ref|XP_002463525.1| hypothetical protein SORBIDRAFT_01g001420 [S... 221 3e-55
gb|ACG27451.1| DNA-directed RNA polymerases I, II, and III 17.1 ... 220 4e-55
ref|XP_003563485.1| PREDICTED: DNA-directed RNA polymerases I, I... 219 1e-54
ref|XP_002274171.1| PREDICTED: DNA-directed RNA polymerases I, I... 218 1e-54
ref|NP_191519.1| RNA polymerase Rpb8 [Arabidopsis thaliana] gi|2... 216 5e-54
>gb|ABK26380.1| unknown [Picea sitchensis]
Length = 145
Score = 247 bits (630), Expect = 4e-63
Identities = 119/145 (82%), Positives = 134/145 (92%)
Frame = +3
Query: 63 MVELLFEDIFTLTRLDPDGKKFDKVSRIEARSEQFDMYMQLDVNTEIYPLNIGEKFTMVL 242
MVELLFEDIFT+TR+DPDGKKFDKVSRIEARSEQFDMYM LDVN ++YP+++GEKF + L
Sbjct: 1 MVELLFEDIFTVTRIDPDGKKFDKVSRIEARSEQFDMYMLLDVNIDVYPVSVGEKFAVAL 60
Query: 243 APTLSLDGTPDTGYFMPGARKSLADKFEYVMHGKLYRISEEGSGINVKVEMYASFGGLLM 422
APTL+LDGTPD GYF+ G RKSLADK+EYVM+GKLY +SEEGSG NVKVE+ ASFGGLLM
Sbjct: 61 APTLNLDGTPDNGYFIQGGRKSLADKYEYVMYGKLYNLSEEGSGANVKVEINASFGGLLM 120
Query: 423 LLKGDPSNAAHFELDQRLFLLMRKV 497
LLKGDPSNA +FELDQRLFLLMRKV
Sbjct: 121 LLKGDPSNAGNFELDQRLFLLMRKV 145
>dbj|BAD54456.1| putative RNA polymerase I, II and III 16.5 kDa subunit [Oryza
sativa Japonica Group]
Length = 396
Score = 234 bits (597), Expect = 2e-59
Identities = 115/147 (78%), Positives = 133/147 (90%), Gaps = 1/147 (0%)
Frame = +3
Query: 60 RMVELLFEDIFTLTRLDPDGKKFDKVSRIEARSEQFDMYMQLDVNTEIYPLNIGEKFTMV 239
+MVE LFEDIFT+TRLDPDGKKFD+VSRIEARSEQFDMYMQLDV TE+YP+ G++FTMV
Sbjct: 250 KMVEHLFEDIFTVTRLDPDGKKFDRVSRIEARSEQFDMYMQLDVATEVYPMRAGDRFTMV 309
Query: 240 LAPTLSLDGTPDTGYFMPGARKSLADKFEYVMHGKLYRISEE-GSGINVKVEMYASFGGL 416
LAPTL+LDGTPDTG++ RK+LADKF+YVMHGKLY+ISE+ SG KVE+YASFGGL
Sbjct: 310 LAPTLNLDGTPDTGFYTQAGRKTLADKFDYVMHGKLYKISEDSSSGQATKVEIYASFGGL 369
Query: 417 LMLLKGDPSNAAHFELDQRLFLLMRKV 497
LM+LKGDPS+AA FELDQRLFLL+RKV
Sbjct: 370 LMMLKGDPSSAASFELDQRLFLLIRKV 396
>gb|EAZ02226.1| hypothetical protein OsI_24321 [Oryza sativa Indica Group]
gi|125598367|gb|EAZ38147.1| hypothetical protein
OsJ_22498 [Oryza sativa Japonica Group]
Length = 191
Score = 234 bits (597), Expect = 2e-59
Identities = 115/147 (78%), Positives = 133/147 (90%), Gaps = 1/147 (0%)
Frame = +3
Query: 60 RMVELLFEDIFTLTRLDPDGKKFDKVSRIEARSEQFDMYMQLDVNTEIYPLNIGEKFTMV 239
+MVE LFEDIFT+TRLDPDGKKFD+VSRIEARSEQFDMYMQLDV TE+YP+ G++FTMV
Sbjct: 45 KMVEHLFEDIFTVTRLDPDGKKFDRVSRIEARSEQFDMYMQLDVATEVYPMRAGDRFTMV 104
Query: 240 LAPTLSLDGTPDTGYFMPGARKSLADKFEYVMHGKLYRISEE-GSGINVKVEMYASFGGL 416
LAPTL+LDGTPDTG++ RK+LADKF+YVMHGKLY+ISE+ SG KVE+YASFGGL
Sbjct: 105 LAPTLNLDGTPDTGFYTQAGRKTLADKFDYVMHGKLYKISEDSSSGQATKVEIYASFGGL 164
Query: 417 LMLLKGDPSNAAHFELDQRLFLLMRKV 497
LM+LKGDPS+AA FELDQRLFLL+RKV
Sbjct: 165 LMMLKGDPSSAASFELDQRLFLLIRKV 191
>ref|XP_006656427.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit
8B-like isoform X1 [Oryza brachyantha]
gi|573948243|ref|XP_006656428.1| PREDICTED: DNA-directed
RNA polymerases II, IV and V subunit 8B-like isoform X2
[Oryza brachyantha] gi|573948245|ref|XP_006656429.1|
PREDICTED: DNA-directed RNA polymerases II, IV and V
subunit 8B-like isoform X3 [Oryza brachyantha]
gi|573948247|ref|XP_006656430.1| PREDICTED: DNA-directed
RNA polymerases II, IV and V subunit 8B-like isoform X4
[Oryza brachyantha] gi|573948249|ref|XP_006656431.1|
PREDICTED: DNA-directed RNA polymerases II, IV and V
subunit 8B-like isoform X5 [Oryza brachyantha]
Length = 146
Score = 233 bits (595), Expect = 4e-59
Identities = 115/146 (78%), Positives = 132/146 (90%), Gaps = 1/146 (0%)
Frame = +3
Query: 63 MVELLFEDIFTLTRLDPDGKKFDKVSRIEARSEQFDMYMQLDVNTEIYPLNIGEKFTMVL 242
MVE LFEDIFT+TRLDPDGKKFD+VSRIEARSEQFDMYMQLDV TE+YP+ G+KFTMVL
Sbjct: 1 MVEHLFEDIFTVTRLDPDGKKFDRVSRIEARSEQFDMYMQLDVATEVYPMRPGDKFTMVL 60
Query: 243 APTLSLDGTPDTGYFMPGARKSLADKFEYVMHGKLYRISEEGSGIN-VKVEMYASFGGLL 419
APTL+LDGTPD G++ RK+LADK++YVMHGKLY+ISE+GSG KVE+YASFGGLL
Sbjct: 61 APTLNLDGTPDIGFYTQAGRKTLADKYDYVMHGKLYKISEDGSGGQATKVEIYASFGGLL 120
Query: 420 MLLKGDPSNAAHFELDQRLFLLMRKV 497
M+LKGDPS AA+FELDQRLFLL+RKV
Sbjct: 121 MMLKGDPSTAANFELDQRLFLLIRKV 146
>ref|XP_006665034.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit
8B-like [Oryza brachyantha]
Length = 147
Score = 232 bits (592), Expect = 9e-59
Identities = 114/147 (77%), Positives = 132/147 (89%), Gaps = 2/147 (1%)
Frame = +3
Query: 63 MVELLFEDIFTLTRLDPDGKKFDKVSRIEARSEQFDMYMQLDVNTEIYPLNIGEKFTMVL 242
M E LFEDIFT+TRLDPDGKKFD+VSRIEAR+EQ ++YMQLDV T++YP++ G+KFTMVL
Sbjct: 1 MAEFLFEDIFTVTRLDPDGKKFDRVSRIEARNEQLNVYMQLDVATDVYPMHPGDKFTMVL 60
Query: 243 APTLSLDGTPDTGYFMPGARKSLADKFEYVMHGKLYRISE--EGSGINVKVEMYASFGGL 416
PTL+LDGTPDTG+F RK+LADK+EYVMHGKLY+ISE E SG N KVEMYASFGGL
Sbjct: 61 VPTLNLDGTPDTGFFTQAGRKTLADKYEYVMHGKLYKISEDKETSGQNAKVEMYASFGGL 120
Query: 417 LMLLKGDPSNAAHFELDQRLFLLMRKV 497
LM+LKGDPS+AA+FELDQRLFLLMRKV
Sbjct: 121 LMMLKGDPSSAANFELDQRLFLLMRKV 147
>ref|XP_004234478.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
rpabc3-like isoform 1 [Solanum lycopersicum]
gi|460377396|ref|XP_004234479.1| PREDICTED: DNA-directed
RNA polymerases I, II, and III subunit rpabc3-like
isoform 2 [Solanum lycopersicum]
Length = 145
Score = 229 bits (583), Expect = 1e-57
Identities = 111/145 (76%), Positives = 130/145 (89%)
Frame = +3
Query: 63 MVELLFEDIFTLTRLDPDGKKFDKVSRIEARSEQFDMYMQLDVNTEIYPLNIGEKFTMVL 242
MVE LFEDIFT+T+ DPDGKKFD+V+RIEARSEQFDM+M LDVNTEIYP+ + +KF MVL
Sbjct: 1 MVETLFEDIFTVTQKDPDGKKFDRVNRIEARSEQFDMFMLLDVNTEIYPMRVKDKFMMVL 60
Query: 243 APTLSLDGTPDTGYFMPGARKSLADKFEYVMHGKLYRISEEGSGINVKVEMYASFGGLLM 422
A TL+LDGTPDTGYF+ G +KSLADKFEYVMHGKLYRISEEGSG +VK +++ SFGGLLM
Sbjct: 61 ASTLNLDGTPDTGYFIQGNKKSLADKFEYVMHGKLYRISEEGSGKHVKADIFVSFGGLLM 120
Query: 423 LLKGDPSNAAHFELDQRLFLLMRKV 497
L+GDPS AA FELDQ++FLL+RKV
Sbjct: 121 QLRGDPSIAAKFELDQKIFLLIRKV 145
>ref|XP_006343291.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit
8B-like [Solanum tuberosum]
Length = 145
Score = 228 bits (582), Expect = 1e-57
Identities = 110/145 (75%), Positives = 130/145 (89%)
Frame = +3
Query: 63 MVELLFEDIFTLTRLDPDGKKFDKVSRIEARSEQFDMYMQLDVNTEIYPLNIGEKFTMVL 242
MVE LFEDIFT+T+ DPDGKKFD+V+RIEARSEQFDM+M LD+NTEIYP+ + +KF MVL
Sbjct: 1 MVETLFEDIFTVTQKDPDGKKFDRVNRIEARSEQFDMFMLLDINTEIYPMRVKDKFMMVL 60
Query: 243 APTLSLDGTPDTGYFMPGARKSLADKFEYVMHGKLYRISEEGSGINVKVEMYASFGGLLM 422
A TL+LDGTPDTGYF+ G +KSLADKFEYVMHGKLYRISEEGSG +VK +++ SFGGLLM
Sbjct: 61 ASTLNLDGTPDTGYFIQGNKKSLADKFEYVMHGKLYRISEEGSGKHVKADIFVSFGGLLM 120
Query: 423 LLKGDPSNAAHFELDQRLFLLMRKV 497
L+GDPS AA FELDQ++FLL+RKV
Sbjct: 121 QLRGDPSIAAKFELDQKIFLLIRKV 145
>ref|NP_001051880.1| Os03g0845700 [Oryza sativa Japonica Group]
gi|29244685|gb|AAO73277.1| putative RNA polymerase
[Oryza sativa Japonica Group] gi|41469638|gb|AAS07361.1|
putative RNA polymerase [Oryza sativa Japonica Group]
gi|108712076|gb|ABF99871.1| RNA polymerase Rpb8 family
protein, expressed [Oryza sativa Japonica Group]
gi|108712077|gb|ABF99872.1| RNA polymerase Rpb8 family
protein, expressed [Oryza sativa Japonica Group]
gi|113550351|dbj|BAF13794.1| Os03g0845700 [Oryza sativa
Japonica Group] gi|125588624|gb|EAZ29288.1| hypothetical
protein OsJ_13351 [Oryza sativa Japonica Group]
gi|215692970|dbj|BAG88390.1| unnamed protein product
[Oryza sativa Japonica Group]
Length = 148
Score = 223 bits (568), Expect = 6e-56
Identities = 109/148 (73%), Positives = 130/148 (87%), Gaps = 3/148 (2%)
Frame = +3
Query: 63 MVELLFEDIFTLTRLDPDGKKFDKVSRIEARSEQFDMYMQLDVNTEIYPLNIGEKFTMVL 242
M E LFEDIFT+TRLDPDGKKFD+VSRIEARS+QFDMYMQLDV T++YP++ G++FTMVL
Sbjct: 1 MAEFLFEDIFTVTRLDPDGKKFDRVSRIEARSDQFDMYMQLDVATDVYPMHPGDRFTMVL 60
Query: 243 APTLSLDGTPDTGYFMPGARKSLADKFEYVMHGKLYRISEEGSGIN---VKVEMYASFGG 413
PTL+LDGTPD+ +F RK+LADK+EYVMHGKLY+ISE+ + KVEMYASFGG
Sbjct: 61 VPTLNLDGTPDSAFFTQAGRKTLADKYEYVMHGKLYKISEDKDTSDQNAKKVEMYASFGG 120
Query: 414 LLMLLKGDPSNAAHFELDQRLFLLMRKV 497
LL++LKGDPS+AA+FELDQRLFLLMRKV
Sbjct: 121 LLVMLKGDPSSAANFELDQRLFLLMRKV 148
>ref|XP_003580476.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
rpabc3-like [Brachypodium distachyon]
Length = 146
Score = 223 bits (568), Expect = 6e-56
Identities = 110/146 (75%), Positives = 127/146 (86%), Gaps = 1/146 (0%)
Frame = +3
Query: 63 MVELLFEDIFTLTRLDPDGKKFDKVSRIEARSEQFDMYMQLDVNTEIYPLNIGEKFTMVL 242
M E LFEDIF + R+DPDGKKFD+V+RIEARSEQF MYMQLDV T +YP++ G+KFTMVL
Sbjct: 1 MAEHLFEDIFVVNRIDPDGKKFDRVNRIEARSEQFHMYMQLDVATYVYPMHAGDKFTMVL 60
Query: 243 APTLSLDGTPDTGYFMPGARKSLADKFEYVMHGKLYRISEEGSGIN-VKVEMYASFGGLL 419
APTL+LDGTPDTGY+ RK+LADK++YVMHGKLY+ISE+ SG KVE YASFGGLL
Sbjct: 61 APTLNLDGTPDTGYYTQAGRKTLADKYDYVMHGKLYKISEDSSGGQAAKVETYASFGGLL 120
Query: 420 MLLKGDPSNAAHFELDQRLFLLMRKV 497
MLLKGDPS+AA+ ELDQRLFLLMRKV
Sbjct: 121 MLLKGDPSSAANLELDQRLFLLMRKV 146
>ref|XP_002466106.1| hypothetical protein SORBIDRAFT_01g001330 [Sorghum bicolor]
gi|241919960|gb|EER93104.1| hypothetical protein
SORBIDRAFT_01g001330 [Sorghum bicolor]
Length = 145
Score = 223 bits (568), Expect = 6e-56
Identities = 110/145 (75%), Positives = 123/145 (84%)
Frame = +3
Query: 63 MVELLFEDIFTLTRLDPDGKKFDKVSRIEARSEQFDMYMQLDVNTEIYPLNIGEKFTMVL 242
M E LFED F ++RLDPDGKKFDKVSR+EARSEQ MYMQLDV T++YPL GEKF MVL
Sbjct: 1 MSEHLFEDTFIVSRLDPDGKKFDKVSRVEARSEQLGMYMQLDVATDVYPLRAGEKFNMVL 60
Query: 243 APTLSLDGTPDTGYFMPGARKSLADKFEYVMHGKLYRISEEGSGINVKVEMYASFGGLLM 422
APTL+LDGTPDTGY+ RK+LAD +EYVM GKLY+ISE+ S N KVE+YASFGGLLM
Sbjct: 61 APTLNLDGTPDTGYYTQAGRKTLADNYEYVMQGKLYKISEDTSSQNAKVEIYASFGGLLM 120
Query: 423 LLKGDPSNAAHFELDQRLFLLMRKV 497
LL+GDPS AA FELDQRLFLLMRKV
Sbjct: 121 LLRGDPSTAASFELDQRLFLLMRKV 145
>gb|EEC76521.1| hypothetical protein OsI_14307 [Oryza sativa Indica Group]
Length = 215
Score = 223 bits (568), Expect = 6e-56
Identities = 109/148 (73%), Positives = 130/148 (87%), Gaps = 3/148 (2%)
Frame = +3
Query: 63 MVELLFEDIFTLTRLDPDGKKFDKVSRIEARSEQFDMYMQLDVNTEIYPLNIGEKFTMVL 242
M E LFEDIFT+TRLDPDGKKFD+VSRIEARS+QFDMYMQLDV T++YP++ G++FTMVL
Sbjct: 68 MAEFLFEDIFTVTRLDPDGKKFDRVSRIEARSDQFDMYMQLDVATDVYPMHPGDRFTMVL 127
Query: 243 APTLSLDGTPDTGYFMPGARKSLADKFEYVMHGKLYRISEEGSGIN---VKVEMYASFGG 413
PTL+LDGTPD+ +F RK+LADK+EYVMHGKLY+ISE+ + KVEMYASFGG
Sbjct: 128 VPTLNLDGTPDSAFFTQAGRKTLADKYEYVMHGKLYKISEDKDTSDQNAKKVEMYASFGG 187
Query: 414 LLMLLKGDPSNAAHFELDQRLFLLMRKV 497
LL++LKGDPS+AA+FELDQRLFLLMRKV
Sbjct: 188 LLVMLKGDPSSAANFELDQRLFLLMRKV 215
>ref|XP_006442881.1| hypothetical protein CICLE_v10022723mg [Citrus clementina]
gi|568850174|ref|XP_006478800.1| PREDICTED: DNA-directed
RNA polymerases II, IV and V subunit 8B-like [Citrus
sinensis] gi|557545143|gb|ESR56121.1| hypothetical
protein CICLE_v10022723mg [Citrus clementina]
Length = 146
Score = 222 bits (565), Expect = 1e-55
Identities = 101/142 (71%), Positives = 126/142 (88%)
Frame = +3
Query: 72 LLFEDIFTLTRLDPDGKKFDKVSRIEARSEQFDMYMQLDVNTEIYPLNIGEKFTMVLAPT 251
+LFEDIF + ++DPDGKKFDKVSRIEA S+ DMYM LDVN+E+YP+ +G+KFTM LA T
Sbjct: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
Query: 252 LSLDGTPDTGYFMPGARKSLADKFEYVMHGKLYRISEEGSGINVKVEMYASFGGLLMLLK 431
L+LDGTPDTGY+ PGARK+LADK+EY+MHGKL++I +EGSG ++K E+Y S+GGLLM+LK
Sbjct: 65 LNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMMLK 124
Query: 432 GDPSNAAHFELDQRLFLLMRKV 497
GDPS +HFELDQRLFLLMRK+
Sbjct: 125 GDPSYVSHFELDQRLFLLMRKL 146
>ref|NP_001147399.1| LOC100281008 [Zea mays] gi|194699730|gb|ACF83949.1| unknown [Zea
mays] gi|195607894|gb|ACG25777.1| DNA-directed RNA
polymerases I, II, and III 17.1 kDa polypeptide [Zea
mays] gi|195608506|gb|ACG26083.1| DNA-directed RNA
polymerases I, II, and III 17.1 kDa polypeptide [Zea
mays] gi|195611040|gb|ACG27350.1| DNA-directed RNA
polymerases I, II, and III 17.1 kDa polypeptide [Zea
mays] gi|195649823|gb|ACG44379.1| DNA-directed RNA
polymerases I, II, and III 17.1 kDa polypeptide [Zea
mays] gi|195653495|gb|ACG46215.1| DNA-directed RNA
polymerases I, II, and III 17.1 kDa polypeptide [Zea
mays] gi|238014148|gb|ACR38109.1| unknown [Zea mays]
gi|413932441|gb|AFW66992.1| DNA-directed RNA polymerase
I, II, and III polypeptide isoform 1 [Zea mays]
gi|413932442|gb|AFW66993.1| DNA-directed RNA polymerase
I, II, and III polypeptide isoform 2 [Zea mays]
gi|413932443|gb|AFW66994.1| DNA-directed RNA polymerase
I, II, and III polypeptide isoform 3 [Zea mays]
gi|413932444|gb|AFW66995.1| DNA-directed RNA polymerase
I, II, and III polypeptide isoform 4 [Zea mays]
Length = 146
Score = 221 bits (564), Expect = 2e-55
Identities = 109/146 (74%), Positives = 125/146 (85%), Gaps = 1/146 (0%)
Frame = +3
Query: 63 MVELLFEDIFTLTRLDPDGKKFDKVSRIEARSEQFDMYMQLDVNTEIYPLNIGEKFTMVL 242
M E LFED F +TRLDPDGKKFD+VSR+EARSEQ DMYMQLDV T++YP++ GEKF MV+
Sbjct: 1 MSEHLFEDTFVVTRLDPDGKKFDRVSRVEARSEQLDMYMQLDVATDVYPMHAGEKFNMVI 60
Query: 243 APTLSLDGTPDTGYFMPGARKSLADKFEYVMHGKLYRISEE-GSGINVKVEMYASFGGLL 419
APTL+LDGTPDTGY+ RK+LAD +EYVM GKLY+ISE+ S N KVEMYASFGGLL
Sbjct: 61 APTLNLDGTPDTGYYTQAGRKTLADNYEYVMQGKLYKISEDTSSSQNAKVEMYASFGGLL 120
Query: 420 MLLKGDPSNAAHFELDQRLFLLMRKV 497
MLL+GDPS AA FELDQRLFLL+RKV
Sbjct: 121 MLLRGDPSTAASFELDQRLFLLIRKV 146
>ref|XP_002530308.1| DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide,
putative [Ricinus communis] gi|223530164|gb|EEF32075.1|
DNA-directed RNA polymerases I, II, and III 17.1 kDa
polypeptide, putative [Ricinus communis]
Length = 146
Score = 221 bits (563), Expect = 2e-55
Identities = 105/142 (73%), Positives = 125/142 (88%)
Frame = +3
Query: 72 LLFEDIFTLTRLDPDGKKFDKVSRIEARSEQFDMYMQLDVNTEIYPLNIGEKFTMVLAPT 251
+LFEDIF + +LDPDGKKFDKVSRIEA S+ DM+M LDVNTEIYP+ +G+KFTM LA T
Sbjct: 5 VLFEDIFVVDKLDPDGKKFDKVSRIEAHSQNCDMFMHLDVNTEIYPMAVGDKFTMALAHT 64
Query: 252 LSLDGTPDTGYFMPGARKSLADKFEYVMHGKLYRISEEGSGINVKVEMYASFGGLLMLLK 431
L+LDGTPDTGY+ GARK+LADK+EY+M+GKLY+ISEEGSG VK EM S+GGLLMLL+
Sbjct: 65 LNLDGTPDTGYYTQGARKTLADKYEYIMNGKLYKISEEGSGKAVKAEMLVSYGGLLMLLR 124
Query: 432 GDPSNAAHFELDQRLFLLMRKV 497
GDPS+ +HFELDQRLFLLMRK+
Sbjct: 125 GDPSHVSHFELDQRLFLLMRKL 146
>gb|EMT09070.1| DNA-directed RNA polymerases I, II, and III subunit rpabc3
[Aegilops tauschii]
Length = 220
Score = 221 bits (562), Expect = 3e-55
Identities = 106/148 (71%), Positives = 131/148 (88%), Gaps = 3/148 (2%)
Frame = +3
Query: 63 MVELLFEDIFTLTRLDPDGKKFDKVSRIEARSEQFDMYMQLDVNTEIYPLNIGEKFTMVL 242
M E LFEDIF +TR+DPDGKKFD+V+RIEARSEQ +MYMQLD+ T++YP+++G+KFTMVL
Sbjct: 1 MAEHLFEDIFHVTRIDPDGKKFDRVNRIEARSEQLEMYMQLDIATDVYPMHMGDKFTMVL 60
Query: 243 APTLSLDGTPDTGYFMPGARKSLADKFEYVMHGKLYRISEEGSGIN---VKVEMYASFGG 413
APTL+LDGTPDTGY+ RK+LADK++YVMHGKLY+ISE+ S + KVE+YASFGG
Sbjct: 61 APTLNLDGTPDTGYYTQAGRKTLADKYDYVMHGKLYKISEDNSSKDKGPTKVEIYASFGG 120
Query: 414 LLMLLKGDPSNAAHFELDQRLFLLMRKV 497
LLMLLKGDPS+AA+ ELDQ+LFLL+RKV
Sbjct: 121 LLMLLKGDPSSAANLELDQKLFLLIRKV 148
>ref|XP_002463525.1| hypothetical protein SORBIDRAFT_01g001420 [Sorghum bicolor]
gi|241917379|gb|EER90523.1| hypothetical protein
SORBIDRAFT_01g001420 [Sorghum bicolor]
Length = 145
Score = 221 bits (562), Expect = 3e-55
Identities = 108/145 (74%), Positives = 122/145 (84%)
Frame = +3
Query: 63 MVELLFEDIFTLTRLDPDGKKFDKVSRIEARSEQFDMYMQLDVNTEIYPLNIGEKFTMVL 242
M E LFED F + RLDPDGKKFD+VSR+EARSEQ MYMQLDV T++YP+ EKF MVL
Sbjct: 1 MSEHLFEDTFVVNRLDPDGKKFDRVSRVEARSEQLAMYMQLDVATDVYPMQPNEKFNMVL 60
Query: 243 APTLSLDGTPDTGYFMPGARKSLADKFEYVMHGKLYRISEEGSGINVKVEMYASFGGLLM 422
APTL+LDGTPDTGY+ RK+LAD +EYVMHGKLY+ISE+ S N KVE+YASFGGLLM
Sbjct: 61 APTLNLDGTPDTGYYTQAGRKTLADNYEYVMHGKLYKISEDTSSQNAKVEIYASFGGLLM 120
Query: 423 LLKGDPSNAAHFELDQRLFLLMRKV 497
LL+GDPS AA FELDQRLFLLMRKV
Sbjct: 121 LLRGDPSTAASFELDQRLFLLMRKV 145
>gb|ACG27451.1| DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide
[Zea mays]
Length = 146
Score = 220 bits (561), Expect = 4e-55
Identities = 108/146 (73%), Positives = 125/146 (85%), Gaps = 1/146 (0%)
Frame = +3
Query: 63 MVELLFEDIFTLTRLDPDGKKFDKVSRIEARSEQFDMYMQLDVNTEIYPLNIGEKFTMVL 242
M + LFED F +TRLDPDGKKFD+VSR+EARSEQ DMYMQLDV T++YP++ GEKF MV+
Sbjct: 1 MSDHLFEDTFVVTRLDPDGKKFDRVSRVEARSEQLDMYMQLDVATDVYPMHAGEKFNMVI 60
Query: 243 APTLSLDGTPDTGYFMPGARKSLADKFEYVMHGKLYRISEE-GSGINVKVEMYASFGGLL 419
APTL+LDGTPDTGY+ RK+LAD +EYVM GKLY+ISE+ S N KVEMYASFGGLL
Sbjct: 61 APTLNLDGTPDTGYYTQAGRKTLADNYEYVMQGKLYKISEDTSSSQNAKVEMYASFGGLL 120
Query: 420 MLLKGDPSNAAHFELDQRLFLLMRKV 497
MLL+GDPS AA FELDQRLFLL+RKV
Sbjct: 121 MLLRGDPSTAASFELDQRLFLLIRKV 146
>ref|XP_003563485.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
rpabc3-like [Brachypodium distachyon]
Length = 144
Score = 219 bits (557), Expect = 1e-54
Identities = 109/146 (74%), Positives = 129/146 (88%), Gaps = 1/146 (0%)
Frame = +3
Query: 63 MVELLFEDIFTLTRLDPDGKKFDKVSRIEARSEQFDMYMQLDVNTEIYPLNIGEKFTMVL 242
M E LFEDIF ++R+DPDGKKFD+V+RIEARSEQ MYMQLDV T++YP++ G+KFTMVL
Sbjct: 1 MAEHLFEDIFVVSRIDPDGKKFDRVNRIEARSEQ--MYMQLDVATDVYPMHAGDKFTMVL 58
Query: 243 APTLSLDGTPDTGYFMPGARKSLADKFEYVMHGKLYRISEEGSGIN-VKVEMYASFGGLL 419
APTL+LDGTPDTGY+ RK+LADK++YVMHGKLY+ISE+ SG KVE+YASFGGLL
Sbjct: 59 APTLNLDGTPDTGYYTQAGRKTLADKYDYVMHGKLYKISEDSSGGQAAKVEIYASFGGLL 118
Query: 420 MLLKGDPSNAAHFELDQRLFLLMRKV 497
MLLKGDPS+AA+ ELDQRLFLLMRKV
Sbjct: 119 MLLKGDPSSAANLELDQRLFLLMRKV 144
>ref|XP_002274171.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
rpabc3 isoform 1 [Vitis vinifera]
gi|359478220|ref|XP_003632088.1| PREDICTED: DNA-directed
RNA polymerases I, II, and III subunit rpabc3 isoform 2
[Vitis vinifera] gi|296084252|emb|CBI24640.3| unnamed
protein product [Vitis vinifera]
Length = 145
Score = 218 bits (556), Expect = 1e-54
Identities = 107/145 (73%), Positives = 121/145 (83%)
Frame = +3
Query: 63 MVELLFEDIFTLTRLDPDGKKFDKVSRIEARSEQFDMYMQLDVNTEIYPLNIGEKFTMVL 242
M LF DIF + ++DPDGKKFDKVSRIEA+SEQ DMYMQLDVNTEIYP++ GEKF M L
Sbjct: 1 MENTLFGDIFKVIQIDPDGKKFDKVSRIEAQSEQLDMYMQLDVNTEIYPMHAGEKFAMSL 60
Query: 243 APTLSLDGTPDTGYFMPGARKSLADKFEYVMHGKLYRISEEGSGINVKVEMYASFGGLLM 422
A TL LDGTPDTGY+ RKSLADKFEYVMHGKLY+ISEEGSG NVK +Y SFGGLLM
Sbjct: 61 ASTLDLDGTPDTGYYTQAGRKSLADKFEYVMHGKLYKISEEGSGPNVKGVIYVSFGGLLM 120
Query: 423 LLKGDPSNAAHFELDQRLFLLMRKV 497
+L GDP+N A +LDQR+FLL+RKV
Sbjct: 121 MLSGDPANTAKLDLDQRVFLLIRKV 145
>ref|NP_191519.1| RNA polymerase Rpb8 [Arabidopsis thaliana]
gi|297817262|ref|XP_002876514.1| hypothetical protein
ARALYDRAFT_907465 [Arabidopsis lyrata subsp. lyrata]
gi|565468254|ref|XP_006292007.1| hypothetical protein
CARUB_v10018195mg [Capsella rubella]
gi|75335784|sp|Q9M1A8.1|RPB8B_ARATH RecName:
Full=DNA-directed RNA polymerases II, IV and V subunit
8B; AltName: Full=RNA polymerase Rpb8
gi|6996296|emb|CAB75457.1| putative protein [Arabidopsis
thaliana] gi|21554131|gb|AAM63211.1| RNA polymerase II
subunit, putative [Arabidopsis thaliana]
gi|26453032|dbj|BAC43592.1| unknown protein [Arabidopsis
thaliana] gi|30793811|gb|AAP40358.1| unknown protein
[Arabidopsis thaliana] gi|297322352|gb|EFH52773.1|
hypothetical protein ARALYDRAFT_907465 [Arabidopsis
lyrata subsp. lyrata] gi|332646423|gb|AEE79944.1| RNA
polymerase Rpb8 [Arabidopsis thaliana]
gi|482560714|gb|EOA24905.1| hypothetical protein
CARUB_v10018195mg [Capsella rubella]
Length = 146
Score = 216 bits (551), Expect = 5e-54
Identities = 99/142 (69%), Positives = 124/142 (87%)
Frame = +3
Query: 72 LLFEDIFTLTRLDPDGKKFDKVSRIEARSEQFDMYMQLDVNTEIYPLNIGEKFTMVLAPT 251
++FEDIF + +LDPDGKKFDKV+R+EARS +M+M LDVNTE+YPL +G+KFT+ +APT
Sbjct: 6 IMFEDIFVVDKLDPDGKKFDKVTRVEARSHNLEMFMHLDVNTEVYPLAVGDKFTLAMAPT 65
Query: 252 LSLDGTPDTGYFMPGARKSLADKFEYVMHGKLYRISEEGSGINVKVEMYASFGGLLMLLK 431
L+LDGTPDTGYF PGA+K+LADK+EY+MHGKLY+ISE G K E+Y SFGGLLMLL+
Sbjct: 66 LNLDGTPDTGYFTPGAKKTLADKYEYIMHGKLYKISER-DGKTPKAELYVSFGGLLMLLQ 124
Query: 432 GDPSNAAHFELDQRLFLLMRKV 497
GDP++ +HFELDQRLFLLMRK+
Sbjct: 125 GDPAHISHFELDQRLFLLMRKL 146