BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia22_contig00007362
         (1181 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI29879.3| unnamed protein product [Vitis vinifera]              327   5e-87
ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I sub...   327   5e-87
ref|XP_002526734.1| DNA-directed RNA polymerase I largest subuni...   317   8e-84
ref|XP_007203063.1| hypothetical protein PRUPE_ppa000153mg [Prun...   313   9e-83
gb|EXC04356.1| DNA-directed RNA polymerase I subunit rpa1 [Morus...   309   1e-81
ref|XP_004165748.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   305   3e-80
ref|XP_004136744.1| PREDICTED: DNA-directed RNA polymerase I sub...   304   4e-80
ref|XP_004299740.1| PREDICTED: DNA-directed RNA polymerase I sub...   303   9e-80
ref|XP_006351332.1| PREDICTED: DNA-directed RNA polymerase I sub...   293   1e-76
ref|XP_007028856.1| Nuclear RNA polymerase A1 isoform 4 [Theobro...   292   2e-76
ref|XP_007028855.1| Nuclear RNA polymerase A1 isoform 3 [Theobro...   292   2e-76
ref|XP_007028854.1| Nuclear RNA polymerase A1, putative isoform ...   292   2e-76
ref|XP_006588921.1| PREDICTED: DNA-directed RNA polymerase I sub...   291   3e-76
ref|XP_007145632.1| hypothetical protein PHAVU_007G255400g [Phas...   291   4e-76
ref|XP_004249758.1| PREDICTED: DNA-directed RNA polymerase I sub...   291   5e-76
ref|XP_006493898.1| PREDICTED: DNA-directed RNA polymerase I sub...   290   6e-76
ref|XP_006421454.1| hypothetical protein CICLE_v10004132mg [Citr...   288   3e-75
ref|XP_003607990.1| DNA-directed RNA polymerase subunit beta [Me...   285   2e-74
ref|XP_006381018.1| hypothetical protein POPTR_0006s05420g [Popu...   283   1e-73
ref|XP_004513648.1| PREDICTED: DNA-directed RNA polymerase I sub...   280   1e-72

>emb|CBI29879.3| unnamed protein product [Vitis vinifera]
          Length = 1669

 Score =  327 bits (839), Expect = 5e-87
 Identities = 185/329 (56%), Positives = 218/329 (66%), Gaps = 22/329 (6%)
 Frame = +2

Query: 116  LGVDAQKRRRQATDEMDYEDAXXXXXXXXXXXXQSVGFESEIDQVDVEDDNSVDGEIQIF 295
            LG+DAQKR++QA+DEMDY D+             S G   EID V+ E + S + E+ I 
Sbjct: 1349 LGLDAQKRKQQASDEMDYGDSEGEPDEGEP----SAGLTEEIDLVEDEVEISNNEEVGIS 1404

Query: 296  DGEDESRRGPVXXXXXXXXXXXXXXDKEXXXXXXXXXXXXXDNDRAVFVEAKGLEFEVHF 475
            D +DE  + P                K              D DRA+ V+AKG  FEVHF
Sbjct: 1405 DPKDEDSKVPSKSKSSKNKKA-----KTEAKRKKRFRAIKKDFDRAILVKAKGTYFEVHF 1459

Query: 476  RFTNEPHILLAQIAQKTAKKVYIKRSGNIEQCSVI---------------KHDN------ 592
            RFTNEPHILLAQIAQK A KVYI+ SG I+ C VI               K +N      
Sbjct: 1460 RFTNEPHILLAQIAQKAANKVYIRSSGKIDLCQVIDCNKDQVIYYGRDPKKRENIPGEEK 1519

Query: 593  RDTPALQTAGVNFPAFWNMQDDLDIRNIVSNDIHAVLRTFGVEAARATIIKEVMNVFEPY 772
            +  PALQTAGV+F AFW MQD+LD+R + SN++HA+L TFGVEAARATIIKEV NVF  Y
Sbjct: 1520 KKLPALQTAGVDFTAFWKMQDELDVRYVYSNNVHAMLNTFGVEAARATIIKEVFNVFNAY 1579

Query: 773  GISVDIRHLSLIADFMTHSGGYRPMSRY-GMAVSTSPFSKMSFETASTFIVEAAYHGEVD 949
            G+ V+IRHLSLIADFMTHSGGYRPM+R+ G+A S SPFSKM+FETAS FIVEAA HG  D
Sbjct: 1580 GVKVNIRHLSLIADFMTHSGGYRPMNRHGGIAESVSPFSKMTFETASKFIVEAASHGMTD 1639

Query: 950  DLESPSARICLGLPVKMGTGCFDLMQKLQ 1036
            +LES SARICLGLPVKMGTGCFDLMQK++
Sbjct: 1640 NLESASARICLGLPVKMGTGCFDLMQKIE 1668


>ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Vitis
            vinifera]
          Length = 1740

 Score =  327 bits (839), Expect = 5e-87
 Identities = 185/329 (56%), Positives = 218/329 (66%), Gaps = 22/329 (6%)
 Frame = +2

Query: 116  LGVDAQKRRRQATDEMDYEDAXXXXXXXXXXXXQSVGFESEIDQVDVEDDNSVDGEIQIF 295
            LG+DAQKR++QA+DEMDY D+             S G   EID V+ E + S + E+ I 
Sbjct: 1420 LGLDAQKRKQQASDEMDYGDSEGEPDEGEP----SAGLTEEIDLVEDEVEISNNEEVGIS 1475

Query: 296  DGEDESRRGPVXXXXXXXXXXXXXXDKEXXXXXXXXXXXXXDNDRAVFVEAKGLEFEVHF 475
            D +DE  + P                K              D DRA+ V+AKG  FEVHF
Sbjct: 1476 DPKDEDSKVPSKSKSSKNKKA-----KTEAKRKKRFRAIKKDFDRAILVKAKGTYFEVHF 1530

Query: 476  RFTNEPHILLAQIAQKTAKKVYIKRSGNIEQCSVI---------------KHDN------ 592
            RFTNEPHILLAQIAQK A KVYI+ SG I+ C VI               K +N      
Sbjct: 1531 RFTNEPHILLAQIAQKAANKVYIRSSGKIDLCQVIDCNKDQVIYYGRDPKKRENIPGEEK 1590

Query: 593  RDTPALQTAGVNFPAFWNMQDDLDIRNIVSNDIHAVLRTFGVEAARATIIKEVMNVFEPY 772
            +  PALQTAGV+F AFW MQD+LD+R + SN++HA+L TFGVEAARATIIKEV NVF  Y
Sbjct: 1591 KKLPALQTAGVDFTAFWKMQDELDVRYVYSNNVHAMLNTFGVEAARATIIKEVFNVFNAY 1650

Query: 773  GISVDIRHLSLIADFMTHSGGYRPMSRY-GMAVSTSPFSKMSFETASTFIVEAAYHGEVD 949
            G+ V+IRHLSLIADFMTHSGGYRPM+R+ G+A S SPFSKM+FETAS FIVEAA HG  D
Sbjct: 1651 GVKVNIRHLSLIADFMTHSGGYRPMNRHGGIAESVSPFSKMTFETASKFIVEAASHGMTD 1710

Query: 950  DLESPSARICLGLPVKMGTGCFDLMQKLQ 1036
            +LES SARICLGLPVKMGTGCFDLMQK++
Sbjct: 1711 NLESASARICLGLPVKMGTGCFDLMQKIE 1739


>ref|XP_002526734.1| DNA-directed RNA polymerase I largest subunit, putative [Ricinus
            communis] gi|223533923|gb|EEF35648.1| DNA-directed RNA
            polymerase I largest subunit, putative [Ricinus communis]
          Length = 1686

 Score =  317 bits (811), Expect = 8e-84
 Identities = 183/336 (54%), Positives = 216/336 (64%), Gaps = 29/336 (8%)
 Frame = +2

Query: 116  LGVDAQKRRRQATDEMDYEDAXXXXXXXXXXXX--QSVGFESEIDQVDVEDDNSVDGEIQ 289
            LG+DAQKR+ QATDEMDY+D               +  GFESEIDQ D E + S D  + 
Sbjct: 1350 LGLDAQKRKLQATDEMDYDDGFEEELNEGESTASEEESGFESEIDQGDNETEISNDVMLD 1409

Query: 290  IFDGEDESRRGPVXXXXXXXXXXXXXX-----DKEXXXXXXXXXXXXXDNDRAVFVEAKG 454
                E    R P                    DK+             D DRA+FVEA+ 
Sbjct: 1410 NEASETLPLRKPSKPKSKKKAAESPSHGEKSKDKKKKPKAKRKSRISKDFDRAIFVEARK 1469

Query: 455  LEFEVHFRFTNEPHILLAQIAQKTAKKVYIKRSGNIEQCSV------------------- 577
            + FEVHF+FTNEPHILLA+IAQKTAKKVYI+  G IEQC V                   
Sbjct: 1470 MHFEVHFKFTNEPHILLAEIAQKTAKKVYIQNPGKIEQCRVTDCKESQVIYYGKDPKERV 1529

Query: 578  -IKHDNRD-TPALQTAGVNFPAFWNMQDDLDIRNIVSNDIHAVLRTFGVEAARATIIKEV 751
             +K D ++  PAL   GV+F  FW MQD LD+R I SN+IHA+L+T+GVEAAR TII+E+
Sbjct: 1530 DLKPDVKEKVPALHATGVDFNTFWKMQDHLDVRYIYSNNIHAMLKTYGVEAARETIIREI 1589

Query: 752  MNVFEPYGISVDIRHLSLIADFMTHSGGYRPMSRY-GMAVSTSPFSKMSFETASTFIVEA 928
             +VF+ YGI+V  RHLSLIADFMTH+GGYRPMSR  G+A S SPFSKMSFETAS FIVEA
Sbjct: 1590 NHVFKSYGIAVSNRHLSLIADFMTHTGGYRPMSRMGGIAESISPFSKMSFETASKFIVEA 1649

Query: 929  AYHGEVDDLESPSARICLGLPVKMGTGCFDLMQKLQ 1036
            A HGE+D+LE+PSARICLGLPVKMGTG FDLMQKL+
Sbjct: 1650 ALHGEIDNLETPSARICLGLPVKMGTGSFDLMQKLE 1685


>ref|XP_007203063.1| hypothetical protein PRUPE_ppa000153mg [Prunus persica]
            gi|462398594|gb|EMJ04262.1| hypothetical protein
            PRUPE_ppa000153mg [Prunus persica]
          Length = 1612

 Score =  313 bits (802), Expect = 9e-83
 Identities = 174/334 (52%), Positives = 213/334 (63%), Gaps = 28/334 (8%)
 Frame = +2

Query: 119  GVDAQKRRRQATDEMDYEDAXXXXXXXXXXXXQSVGFESEIDQVDVEDDNSVDGEIQIFD 298
            G+DA KR+ QATDEMDYED              S G ESEID+ + E +   DGEI + D
Sbjct: 1276 GLDAHKRKLQATDEMDYEDGCDDEVREADL---SDGDESEIDEEENEVEIGKDGEIGVID 1332

Query: 299  GEDESRRGPVXXXXXXXXXXXXXXDKEXXXXXXXXXXXXXD-----NDRAVFVEAKGLEF 463
              DE    P+                +             +      DRA+FV AKG  F
Sbjct: 1333 ANDEMPGSPLEEAGDLAKPKSKEKKTKSGSQIRKKRKVRAEMVKKETDRAIFVSAKGFHF 1392

Query: 464  EVHFRFT-NEPHILLAQIAQKTAKKVYIKRSGNIEQCSVIKHDN---------------- 592
            EVHFRF  NEPHILL+QIAQKTA+KVYI+RSG +  C  I  D                 
Sbjct: 1393 EVHFRFADNEPHILLSQIAQKTAQKVYIQRSGKVADCKQITCDENQVLCFGKDPENKQSF 1452

Query: 593  -----RDTPALQTAGVNFPAFWNMQDDLDIRNIVSNDIHAVLRTFGVEAARATIIKEVMN 757
                 ++ PALQT G++F  FW +QD LD+R I SN+IHA+L T+GVEAAR TII+E+ N
Sbjct: 1453 SSKEKKEMPALQTTGIDFGTFWQLQDVLDVRYIYSNNIHAMLNTYGVEAARETIIREINN 1512

Query: 758  VFEPYGISVDIRHLSLIADFMTHSGGYRPMSRYGMAV-STSPFSKMSFETASTFIVEAAY 934
            VF+ YGISV+IRHL+LIADFMTH+GGYRP++R+G  V S SPF+KM+FETAS FIVEAAY
Sbjct: 1513 VFKSYGISVNIRHLTLIADFMTHAGGYRPLNRFGGIVESISPFNKMTFETASKFIVEAAY 1572

Query: 935  HGEVDDLESPSARICLGLPVKMGTGCFDLMQKLQ 1036
            HG+VD LE+PSARICLGLPV +GTGCFDLM K++
Sbjct: 1573 HGQVDRLETPSARICLGLPVNVGTGCFDLMHKME 1606


>gb|EXC04356.1| DNA-directed RNA polymerase I subunit rpa1 [Morus notabilis]
          Length = 1770

 Score =  309 bits (792), Expect = 1e-81
 Identities = 172/331 (51%), Positives = 211/331 (63%), Gaps = 24/331 (7%)
 Frame = +2

Query: 116  LGVDAQKRRRQATDEMDYEDAXXXXXXXXXXXXQSVGFESEIDQVDVEDDNSVDGEIQIF 295
            LG+DA K++RQATDEMDY+D                G ESE D  + E +   D E+++ 
Sbjct: 1442 LGLDAVKQKRQATDEMDYDD---DYDERVNEEATRAGSESEDDNDEDEVEFRKDNEVEML 1498

Query: 296  DGEDESRRGPVXXXXXXXXXXXXXXDKEXXXXXXXXXXXXX--DNDRAVFVEAKGLEFEV 469
            D +      P                K                D+DR++FVEAKG  F+V
Sbjct: 1499 DAKGGHLESPSKAEGFSTSESLKTKTKSRAKGKKKIRRQFNRKDDDRSIFVEAKGFYFKV 1558

Query: 470  HFRFTNEPHILLAQIAQKTAKKVYIKRSGNIEQCSVIK---------------------H 586
            HFRF+NE HILLAQIAQ TA +VYI+ SG ++ C  I                       
Sbjct: 1559 HFRFSNEAHILLAQIAQNTATRVYIQSSGKVDNCQQITCKENQVIYYGKDPKSRDDIPLE 1618

Query: 587  DNRDTPALQTAGVNFPAFWNMQDDLDIRNIVSNDIHAVLRTFGVEAARATIIKEVMNVFE 766
            +  + PALQT+GV+F  FW +QD LD+R I SNDIHA+L T+GVEAAR TII+E+ NVF+
Sbjct: 1619 EKENIPALQTSGVDFMTFWKLQDILDVRYIYSNDIHAMLNTYGVEAARETIIREITNVFK 1678

Query: 767  PYGISVDIRHLSLIADFMTHSGGYRPMSRY-GMAVSTSPFSKMSFETASTFIVEAAYHGE 943
             YGISV+IRHL+LIADFMTH+GGYR MSR+ G+A S SPFSKM FETAS FIVEAAYH E
Sbjct: 1679 SYGISVNIRHLTLIADFMTHTGGYRSMSRHGGIADSISPFSKMCFETASKFIVEAAYHRE 1738

Query: 944  VDDLESPSARICLGLPVKMGTGCFDLMQKLQ 1036
            +DDLE+PSARICLGLPVK+GTGCFDLMQKL+
Sbjct: 1739 MDDLETPSARICLGLPVKVGTGCFDLMQKLE 1769


>ref|XP_004165748.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
            RPA1-like [Cucumis sativus]
          Length = 1652

 Score =  305 bits (780), Expect = 3e-80
 Identities = 179/364 (49%), Positives = 221/364 (60%), Gaps = 22/364 (6%)
 Frame = +2

Query: 11   SKDTDEGDTGSKSQQVXXXXXXXXXXXXXXXXXXXLGVDAQKRRRQATDEMDYEDAXXXX 190
            SK + EGD  S S+Q                    LG D +K++ QA DEMDYED     
Sbjct: 1296 SKGSSEGDEVSSSRQ---EEMDDDDEGNDLDVAEDLGSDXEKQKLQANDEMDYED---DS 1349

Query: 191  XXXXXXXXQSVGFESEIDQVDVEDDNSVDGEIQIFDGEDESRRGPVXXXXXXXXXXXXXX 370
                     S GFESE+DQ D  +  + D    + D   E++   V              
Sbjct: 1350 EDDLNAKESSTGFESEVDQGDEAEITNNDMIEIVKDSASENQPEIVDVSKSMSKEKTTET 1409

Query: 371  DKEXXXXXXXXXXXXXDNDRAVFVEAKGLEFEVHFRFTNEPHILLAQIAQKTAKKVYIKR 550
             KE             + DR++FVEAK   FEVHF+FTNEPH LL+QI Q+ A+KV I+R
Sbjct: 1410 SKEKKKVKSELVRK--ETDRSIFVEAKENHFEVHFKFTNEPHTLLSQIVQRAAQKVSIQR 1467

Query: 551  SGNIEQCS--------VIKHDNR-------------DTPALQTAGVNFPAFWNMQDDLDI 667
            SG I QC         VI H N                PALQT+GV+F   W MQD+LD+
Sbjct: 1468 SGKIIQCQQITCKEGQVIYHGNNLKERKNLKPEEKEKIPALQTSGVDFKTLWEMQDELDV 1527

Query: 668  RNIVSNDIHAVLRTFGVEAARATIIKEVMNVFEPYGISVDIRHLSLIADFMTHSGGYRPM 847
            R I SNDIHA+L+T+GVEAARATII+E+ N+F  YGISV+IRHLSL+AD+MTHSGGYRPM
Sbjct: 1528 RYIYSNDIHAMLQTYGVEAARATIIREIQNIFTSYGISVNIRHLSLVADYMTHSGGYRPM 1587

Query: 848  SRY-GMAVSTSPFSKMSFETASTFIVEAAYHGEVDDLESPSARICLGLPVKMGTGCFDLM 1024
            SR  G++ S SPFS+M+FETA  FIV+AA HGEVD+LE+PS+RICLGLPVKMGTG FDLM
Sbjct: 1588 SRLGGISDSISPFSRMTFETAGKFIVQAALHGEVDNLETPSSRICLGLPVKMGTGSFDLM 1647

Query: 1025 QKLQ 1036
            QK++
Sbjct: 1648 QKIE 1651


>ref|XP_004136744.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Cucumis
            sativus]
          Length = 1650

 Score =  304 bits (779), Expect = 4e-80
 Identities = 179/364 (49%), Positives = 221/364 (60%), Gaps = 22/364 (6%)
 Frame = +2

Query: 11   SKDTDEGDTGSKSQQVXXXXXXXXXXXXXXXXXXXLGVDAQKRRRQATDEMDYEDAXXXX 190
            SK + EGD  S S+Q                    LG D +K++ QA DEMDYED     
Sbjct: 1293 SKGSSEGDEVSSSRQ--KENDDDDDEGNDLDVAEDLGSDMKKQKLQANDEMDYED---DS 1347

Query: 191  XXXXXXXXQSVGFESEIDQVDVEDDNSVDGEIQIFDGEDESRRGPVXXXXXXXXXXXXXX 370
                     S GFESE+DQ D  +  + D    + D   E++   V              
Sbjct: 1348 EDDLNAKESSTGFESEVDQGDEAEITNNDMIEIVKDSASENQPEIVDVSKSMSKEKTTET 1407

Query: 371  DKEXXXXXXXXXXXXXDNDRAVFVEAKGLEFEVHFRFTNEPHILLAQIAQKTAKKVYIKR 550
             KE             + DR++FVEAK   FEVHF+FTNEPH LL+QI Q+ A+KV I+R
Sbjct: 1408 SKEKKKVKSELVRK--ETDRSIFVEAKENHFEVHFKFTNEPHTLLSQIVQRAAQKVSIQR 1465

Query: 551  SGNIEQCS--------VIKHDNR-------------DTPALQTAGVNFPAFWNMQDDLDI 667
            SG I QC         VI H N                PALQT+GV+F   W MQD+LD+
Sbjct: 1466 SGKIIQCQQITCKEGQVIYHGNNLKERKNLKPEEKEKIPALQTSGVDFKTLWEMQDELDV 1525

Query: 668  RNIVSNDIHAVLRTFGVEAARATIIKEVMNVFEPYGISVDIRHLSLIADFMTHSGGYRPM 847
            R I SNDIHA+L+T+GVEAARATII+E+ N+F  YGISV+IRHLSL+AD+MTHSGGYRPM
Sbjct: 1526 RYIYSNDIHAMLQTYGVEAARATIIREIQNIFTSYGISVNIRHLSLVADYMTHSGGYRPM 1585

Query: 848  SRY-GMAVSTSPFSKMSFETASTFIVEAAYHGEVDDLESPSARICLGLPVKMGTGCFDLM 1024
            SR  G++ S SPFS+M+FETA  FIV+AA HGEVD+LE+PS+RICLGLPVKMGTG FDLM
Sbjct: 1586 SRLGGISDSISPFSRMTFETAGKFIVQAALHGEVDNLETPSSRICLGLPVKMGTGSFDLM 1645

Query: 1025 QKLQ 1036
            QK++
Sbjct: 1646 QKIE 1649


>ref|XP_004299740.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Fragaria
            vesca subsp. vesca]
          Length = 1673

 Score =  303 bits (776), Expect = 9e-80
 Identities = 168/334 (50%), Positives = 207/334 (61%), Gaps = 28/334 (8%)
 Frame = +2

Query: 119  GVDAQKRRRQATDEMDYEDAXXXXXXXXXXXXQSVGFESEIDQVDVEDDNSVDGEIQIFD 298
            G+DAQK++RQ TDEM+Y+D             QS  FE+EID  +++ +   DG   I D
Sbjct: 1342 GLDAQKQKRQGTDEMEYDD---DWEDEFNEGRQSDEFENEIDNGELDVEIDKDGVTGISD 1398

Query: 299  GEDESRRG-PVXXXXXXXXXXXXXXDKEXXXXXXXXXXXXXDNDRAVFVEAKGLEFEVHF 475
              D+ +                    ++             + DRA FV AKG  FE+HF
Sbjct: 1399 ANDKMQESCSTGGISKPHSKGKKTKSRDKIKKKTSAKLVRKEYDRATFVSAKGFHFEIHF 1458

Query: 476  RFTNEPHILLAQIAQKTAKKVYIKRSGNIEQCSVI------------------------- 580
            +FTNEPHILL QIAQKTA+ VY+K SGNI  C  I                         
Sbjct: 1459 KFTNEPHILLDQIAQKTARNVYVKSSGNILDCQDIDIYGNEDQVFCCWNDPRNKLSGEKN 1518

Query: 581  -KHDNRDTPALQTAGVNFPAFWNMQDDLDIRNIVSNDIHAVLRTFGVEAARATIIKEVMN 757
               + +   ALQTAGV+F   W +QDDLD+  I SN+IHA+L T+GVEAAR TIIKE+ N
Sbjct: 1519 PSEEEKKMRALQTAGVDFATLWKLQDDLDVNYIYSNNIHAMLNTYGVEAARETIIKEISN 1578

Query: 758  VFEPYGISVDIRHLSLIADFMTHSGGYRPMSRY-GMAVSTSPFSKMSFETASTFIVEAAY 934
            VF+ YGISV+IRHL LIAD+MT SG YRPM+R+ G+A STSP +KMSFETAS FI EAAY
Sbjct: 1579 VFKVYGISVNIRHLLLIADYMTRSGSYRPMNRFGGIAESTSPMNKMSFETASKFIQEAAY 1638

Query: 935  HGEVDDLESPSARICLGLPVKMGTGCFDLMQKLQ 1036
            HGE DDLE+PSARICLGLPVK+GTGCFDLM K++
Sbjct: 1639 HGEKDDLETPSARICLGLPVKVGTGCFDLMHKME 1672


>ref|XP_006351332.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Solanum
            tuberosum]
          Length = 1675

 Score =  293 bits (749), Expect = 1e-76
 Identities = 167/333 (50%), Positives = 206/333 (61%), Gaps = 27/333 (8%)
 Frame = +2

Query: 116  LGVDAQKRRRQATDEMDYEDAXXXXXXXXXXXXQSVGFES--EIDQVDVEDDNSVDGEIQ 289
            L  DAQKR++Q TDEMDY+D             +    E   EID  D E+  +   E Q
Sbjct: 1349 LSSDAQKRKQQTTDEMDYDDDENEDEAETTAEIEDEKSEQTDEIDNGDEEEIGNRGNEEQ 1408

Query: 290  IFD----GEDESRRGPVXXXXXXXXXXXXXXDKEXXXXXXXXXXXXXDNDRAVFVEAKGL 457
            +       +D S                    KE             D+DR VFV+ +GL
Sbjct: 1409 MSKLQSTEDDISNTKSSKSKTKTKTTVKQNKKKERRSKK--------DSDRCVFVDVEGL 1460

Query: 458  EFEVHFRFTNEPHILLAQIAQKTAKKVYIKRSGNIEQCSVIKHDNRDTP----------- 604
             FEVHFRF NEPHILLAQ+AQKTAKKVYIK SG I+QC ++K++  +             
Sbjct: 1461 HFEVHFRFVNEPHILLAQVAQKTAKKVYIKNSGKIDQCRMVKYEVTENTVMWDEYQTKQQ 1520

Query: 605  ---------ALQTAGVNFPAFWNMQDDLDIRNIVSNDIHAVLRTFGVEAARATIIKEVMN 757
                     AL+ AGV+F  FW MQDDLD+  I +N+I A+L T+GVEAARA+I++EV  
Sbjct: 1521 SQDSDSAYWALKAAGVDFGTFWEMQDDLDVTRIYTNNIRAMLNTYGVEAARASILREVKT 1580

Query: 758  VFEPYGISVDIRHLSLIADFMTHSGGYRPMSRYG-MAVSTSPFSKMSFETASTFIVEAAY 934
            VF  YG+ +D RHLSLIADFMTH+GGY+PMSR+G ++ S SPF KMSFETAS FIVEAA 
Sbjct: 1581 VFGIYGVEIDFRHLSLIADFMTHTGGYQPMSRHGSISESLSPFLKMSFETASKFIVEAAA 1640

Query: 935  HGEVDDLESPSARICLGLPVKMGTGCFDLMQKL 1033
            HG  D+LE+PS+RICLGLPVKMGTGCFD+MQKL
Sbjct: 1641 HGLTDNLETPSSRICLGLPVKMGTGCFDIMQKL 1673


>ref|XP_007028856.1| Nuclear RNA polymerase A1 isoform 4 [Theobroma cacao]
            gi|508717461|gb|EOY09358.1| Nuclear RNA polymerase A1
            isoform 4 [Theobroma cacao]
          Length = 1397

 Score =  292 bits (748), Expect = 2e-76
 Identities = 172/364 (47%), Positives = 213/364 (58%), Gaps = 21/364 (5%)
 Frame = +2

Query: 8    SSKDTDEGDTGSKSQQVXXXXXXXXXXXXXXXXXXXLGVDAQKRRRQATDEMDYEDAXXX 187
            +S + DE  +  +S++                    LG+DAQK+++Q TDEMDYED    
Sbjct: 1036 ASNEMDEDVSEGRSRETKNDDDDDDDDADDEERAEDLGLDAQKQKQQTTDEMDYED---D 1092

Query: 188  XXXXXXXXXQSVGFESEIDQVDVEDDNSVDGEIQIFDGEDE-SRRGPVXXXXXXXXXXXX 364
                          ESEID  + E        I   +G+DE S+  P             
Sbjct: 1093 SEVEQNEGASLAALESEIDMSEDETGTIQINMIGSDNGKDEISQSSPNLENRSNPKSREE 1152

Query: 365  XXDKEXXXXXXXXXXXXXDNDRAVFVEAKGLEFEVHFRFTNEPHILLAQIAQKTAKKVYI 544
                E             ++DRA+F   +GL FEVHF+  NEPHILLAQIA+KTAKKVYI
Sbjct: 1153 KTGSEPKRKKMKAKFVRKESDRAIFNAIRGLCFEVHFKLKNEPHILLAQIAEKTAKKVYI 1212

Query: 545  KRSGNIEQCSVIK-------------------HDNRDTPALQTAGVNFPAFWNMQDDLDI 667
            +  G I+QC V                      D     AL T GV+F AFW M+D +D+
Sbjct: 1213 QSFGKIDQCRVTDCSENQVFYYGEDPKKRKSPSDKEKIQALHTTGVDFGAFWKMEDHIDV 1272

Query: 668  RNIVSNDIHAVLRTFGVEAARATIIKEVMNVFEPYGISVDIRHLSLIADFMTHSGGYRPM 847
            R + SN IHA+L T+GVEAAR TII+E+ +VF  YGI+V+IRHL+LIADFMTHSG YRPM
Sbjct: 1273 RYLYSNSIHAMLNTYGVEAARETIIREISHVFTSYGIAVNIRHLTLIADFMTHSGRYRPM 1332

Query: 848  SRY-GMAVSTSPFSKMSFETASTFIVEAAYHGEVDDLESPSARICLGLPVKMGTGCFDLM 1024
            SR  G+A S SPFSKMSFETAS FIVEAA HG VD+LE+PS+RICLGLPVKMGTG FDLM
Sbjct: 1333 SRLGGIAESISPFSKMSFETASKFIVEAAKHGLVDNLETPSSRICLGLPVKMGTGSFDLM 1392

Query: 1025 QKLQ 1036
            QK++
Sbjct: 1393 QKVE 1396


>ref|XP_007028855.1| Nuclear RNA polymerase A1 isoform 3 [Theobroma cacao]
            gi|508717460|gb|EOY09357.1| Nuclear RNA polymerase A1
            isoform 3 [Theobroma cacao]
          Length = 1400

 Score =  292 bits (748), Expect = 2e-76
 Identities = 172/364 (47%), Positives = 213/364 (58%), Gaps = 21/364 (5%)
 Frame = +2

Query: 8    SSKDTDEGDTGSKSQQVXXXXXXXXXXXXXXXXXXXLGVDAQKRRRQATDEMDYEDAXXX 187
            +S + DE  +  +S++                    LG+DAQK+++Q TDEMDYED    
Sbjct: 1039 ASNEMDEDVSEGRSRETKNDDDDDDDDADDEERAEDLGLDAQKQKQQTTDEMDYED---D 1095

Query: 188  XXXXXXXXXQSVGFESEIDQVDVEDDNSVDGEIQIFDGEDE-SRRGPVXXXXXXXXXXXX 364
                          ESEID  + E        I   +G+DE S+  P             
Sbjct: 1096 SEVEQNEGASLAALESEIDMSEDETGTIQINMIGSDNGKDEISQSSPNLENRSNPKSREE 1155

Query: 365  XXDKEXXXXXXXXXXXXXDNDRAVFVEAKGLEFEVHFRFTNEPHILLAQIAQKTAKKVYI 544
                E             ++DRA+F   +GL FEVHF+  NEPHILLAQIA+KTAKKVYI
Sbjct: 1156 KTGSEPKRKKMKAKFVRKESDRAIFNAIRGLCFEVHFKLKNEPHILLAQIAEKTAKKVYI 1215

Query: 545  KRSGNIEQCSVIK-------------------HDNRDTPALQTAGVNFPAFWNMQDDLDI 667
            +  G I+QC V                      D     AL T GV+F AFW M+D +D+
Sbjct: 1216 QSFGKIDQCRVTDCSENQVFYYGEDPKKRKSPSDKEKIQALHTTGVDFGAFWKMEDHIDV 1275

Query: 668  RNIVSNDIHAVLRTFGVEAARATIIKEVMNVFEPYGISVDIRHLSLIADFMTHSGGYRPM 847
            R + SN IHA+L T+GVEAAR TII+E+ +VF  YGI+V+IRHL+LIADFMTHSG YRPM
Sbjct: 1276 RYLYSNSIHAMLNTYGVEAARETIIREISHVFTSYGIAVNIRHLTLIADFMTHSGRYRPM 1335

Query: 848  SRY-GMAVSTSPFSKMSFETASTFIVEAAYHGEVDDLESPSARICLGLPVKMGTGCFDLM 1024
            SR  G+A S SPFSKMSFETAS FIVEAA HG VD+LE+PS+RICLGLPVKMGTG FDLM
Sbjct: 1336 SRLGGIAESISPFSKMSFETASKFIVEAAKHGLVDNLETPSSRICLGLPVKMGTGSFDLM 1395

Query: 1025 QKLQ 1036
            QK++
Sbjct: 1396 QKVE 1399


>ref|XP_007028854.1| Nuclear RNA polymerase A1, putative isoform 2 [Theobroma cacao]
            gi|508717459|gb|EOY09356.1| Nuclear RNA polymerase A1,
            putative isoform 2 [Theobroma cacao]
          Length = 1689

 Score =  292 bits (748), Expect = 2e-76
 Identities = 172/364 (47%), Positives = 213/364 (58%), Gaps = 21/364 (5%)
 Frame = +2

Query: 8    SSKDTDEGDTGSKSQQVXXXXXXXXXXXXXXXXXXXLGVDAQKRRRQATDEMDYEDAXXX 187
            +S + DE  +  +S++                    LG+DAQK+++Q TDEMDYED    
Sbjct: 1328 ASNEMDEDVSEGRSRETKNDDDDDDDDADDEERAEDLGLDAQKQKQQTTDEMDYED---D 1384

Query: 188  XXXXXXXXXQSVGFESEIDQVDVEDDNSVDGEIQIFDGEDE-SRRGPVXXXXXXXXXXXX 364
                          ESEID  + E        I   +G+DE S+  P             
Sbjct: 1385 SEVEQNEGASLAALESEIDMSEDETGTIQINMIGSDNGKDEISQSSPNLENRSNPKSREE 1444

Query: 365  XXDKEXXXXXXXXXXXXXDNDRAVFVEAKGLEFEVHFRFTNEPHILLAQIAQKTAKKVYI 544
                E             ++DRA+F   +GL FEVHF+  NEPHILLAQIA+KTAKKVYI
Sbjct: 1445 KTGSEPKRKKMKAKFVRKESDRAIFNAIRGLCFEVHFKLKNEPHILLAQIAEKTAKKVYI 1504

Query: 545  KRSGNIEQCSVIK-------------------HDNRDTPALQTAGVNFPAFWNMQDDLDI 667
            +  G I+QC V                      D     AL T GV+F AFW M+D +D+
Sbjct: 1505 QSFGKIDQCRVTDCSENQVFYYGEDPKKRKSPSDKEKIQALHTTGVDFGAFWKMEDHIDV 1564

Query: 668  RNIVSNDIHAVLRTFGVEAARATIIKEVMNVFEPYGISVDIRHLSLIADFMTHSGGYRPM 847
            R + SN IHA+L T+GVEAAR TII+E+ +VF  YGI+V+IRHL+LIADFMTHSG YRPM
Sbjct: 1565 RYLYSNSIHAMLNTYGVEAARETIIREISHVFTSYGIAVNIRHLTLIADFMTHSGRYRPM 1624

Query: 848  SRY-GMAVSTSPFSKMSFETASTFIVEAAYHGEVDDLESPSARICLGLPVKMGTGCFDLM 1024
            SR  G+A S SPFSKMSFETAS FIVEAA HG VD+LE+PS+RICLGLPVKMGTG FDLM
Sbjct: 1625 SRLGGIAESISPFSKMSFETASKFIVEAAKHGLVDNLETPSSRICLGLPVKMGTGSFDLM 1684

Query: 1025 QKLQ 1036
            QK++
Sbjct: 1685 QKVE 1688


>ref|XP_006588921.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Glycine
            max]
          Length = 1651

 Score =  291 bits (746), Expect = 3e-76
 Identities = 165/329 (50%), Positives = 199/329 (60%), Gaps = 22/329 (6%)
 Frame = +2

Query: 116  LGVDAQKRRRQATDEMDYEDAXXXXXXXXXXXXQSVGFESEIDQVDVEDDNSVDGEIQIF 295
            LG DAQKR+ Q TDE+DYED             +  G E   D    E+ N+V       
Sbjct: 1334 LGSDAQKRKLQGTDEVDYEDGPEEETHDGELSEEIEGDEDGSDVDANENYNNVTDA---- 1389

Query: 296  DGEDESRRGPVXXXXXXXXXXXXXXDKEXXXXXXXXXXXXXDNDRAVFVEAKGLEFEVHF 475
                E    P                K+               DRA+FVEAKG  FE+HF
Sbjct: 1390 -NNSEGLEKPSKSKTIDEKQNLKREKKKSEPTTKKY-------DRAIFVEAKGKHFEIHF 1441

Query: 476  RFTNEPHILLAQIAQKTAKKVYIKRSGNIEQCSVIK---------------------HDN 592
            RFT EPHILL QIAQ+TAKKV I+  G + +C  I                       + 
Sbjct: 1442 RFTGEPHILLTQIAQRTAKKVCIQNFGKVGECKAITCKESGVIYYGKDGRKRIEISASEK 1501

Query: 593  RDTPALQTAGVNFPAFWNMQDDLDIRNIVSNDIHAVLRTFGVEAARATIIKEVMNVFEPY 772
               PALQT+GV+F  FW ++DDLD+R I SN++HA+L  +GVEAAR TII+EV NVF+ Y
Sbjct: 1502 EQIPALQTSGVHFKTFWELEDDLDVRYIYSNNVHAMLNAYGVEAARETIIREVQNVFKSY 1561

Query: 773  GISVDIRHLSLIADFMTHSGGYRPMSRYG-MAVSTSPFSKMSFETASTFIVEAAYHGEVD 949
            GISV+IRHL+LIADFMTH+G YRPM+R G +A STSPF KM FETA  FIVEAAYHG+VD
Sbjct: 1562 GISVNIRHLTLIADFMTHTGSYRPMNRTGSIADSTSPFIKMCFETAGNFIVEAAYHGQVD 1621

Query: 950  DLESPSARICLGLPVKMGTGCFDLMQKLQ 1036
            +LE+PSARICLGLPVKMGTGC DL+QKL+
Sbjct: 1622 NLETPSARICLGLPVKMGTGCHDLIQKLE 1650


>ref|XP_007145632.1| hypothetical protein PHAVU_007G255400g [Phaseolus vulgaris]
            gi|561018822|gb|ESW17626.1| hypothetical protein
            PHAVU_007G255400g [Phaseolus vulgaris]
          Length = 1637

 Score =  291 bits (745), Expect = 4e-76
 Identities = 166/329 (50%), Positives = 212/329 (64%), Gaps = 22/329 (6%)
 Frame = +2

Query: 116  LGVDAQKRRRQATDEMDYEDAXXXXXXXXXXXXQSVGFESEIDQVDVEDDNSVDGEIQIF 295
            LG DAQKR+RQ TDE+DYED               +  E E D+ +V+D+ ++D      
Sbjct: 1326 LGSDAQKRKRQGTDEVDYEDGPEEETHDGV-----LSEEIENDEDNVDDNMTLDASDS-- 1378

Query: 296  DGEDESRRGPVXXXXXXXXXXXXXXDKEXXXXXXXXXXXXXDNDRAVFVEAKGLEFEVHF 475
            +G DE     +              +K+               DRAVFV+AKG+ F++HF
Sbjct: 1379 EGLDE-----LSESKSIFEKDSLKREKKKSRPTTRKY------DRAVFVKAKGMHFQIHF 1427

Query: 476  RFTNEPHILLAQIAQKTAKKVYIKRSGNIEQCSVI---------------KHDN------ 592
            +FT EP ILLA+IA ++AKKV I+ SG + +C  +               K D+      
Sbjct: 1428 KFTGEPDILLAEIALRSAKKVCIQNSGRVGECKAVTCKESGVMYYGEDSRKRDDIPASVK 1487

Query: 593  RDTPALQTAGVNFPAFWNMQDDLDIRNIVSNDIHAVLRTFGVEAARATIIKEVMNVFEPY 772
               PALQT+GV+F  FW +QDDLD+R I SN++HA+L  +GVEAAR TII+EV NVF+ Y
Sbjct: 1488 EKIPALQTSGVHFKTFWELQDDLDVRYIYSNNVHAMLNAYGVEAARETIIREVQNVFKSY 1547

Query: 773  GISVDIRHLSLIADFMTHSGGYRPMSRYG-MAVSTSPFSKMSFETASTFIVEAAYHGEVD 949
            GISV+IRHL+LIADFMTHSGGYRPM+R G +A  TSPF KM FETAS FIVEAAYHG+VD
Sbjct: 1548 GISVNIRHLTLIADFMTHSGGYRPMNRNGSIADCTSPFIKMCFETASKFIVEAAYHGQVD 1607

Query: 950  DLESPSARICLGLPVKMGTGCFDLMQKLQ 1036
            +LE+PS+RICLGLPVKMGTGC DL+QKL+
Sbjct: 1608 NLETPSSRICLGLPVKMGTGCHDLIQKLE 1636


>ref|XP_004249758.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Solanum
            lycopersicum]
          Length = 1677

 Score =  291 bits (744), Expect = 5e-76
 Identities = 162/331 (48%), Positives = 202/331 (61%), Gaps = 25/331 (7%)
 Frame = +2

Query: 116  LGVDAQKRRRQATDEMDYED----AXXXXXXXXXXXXQSVGFESEIDQVDVEDDNSVDGE 283
            L  DAQKR++Q TDEMDY+D    A            +      EID  D E++     E
Sbjct: 1351 LSSDAQKRKQQTTDEMDYDDDEDEAEAEAEATAEIEDEKSEQTDEIDNGDEEENGDRGNE 1410

Query: 284  IQIFDGEDESRRGPVXXXXXXXXXXXXXXDKEXXXXXXXXXXXXXDNDRAVFVEAKGLEF 463
                  E  S+                                  D+DR VFV+ +GL F
Sbjct: 1411 ------EHTSKLQSTEEDISNTKTSKSKTKTTVKQKKKKERRSKKDSDRCVFVDVEGLHF 1464

Query: 464  EVHFRFTNEPHILLAQIAQKTAKKVYIKRSGNIEQCSVIKHDNRDTP------------- 604
            EVHFRF NEPHILLAQ+AQKTAKKVY+K SG I+QC ++K++  +               
Sbjct: 1465 EVHFRFVNEPHILLAQVAQKTAKKVYVKNSGKIDQCRMVKYEVTENTVMWDENQTKQQRQ 1524

Query: 605  -------ALQTAGVNFPAFWNMQDDLDIRNIVSNDIHAVLRTFGVEAARATIIKEVMNVF 763
                   AL+ AGV+F  FW MQDDLD+  I +N+I A+L T+GVEAARA+I++EV  VF
Sbjct: 1525 DSDSAYWALKAAGVDFGTFWEMQDDLDVTRIYTNNIRAMLNTYGVEAARASILREVKTVF 1584

Query: 764  EPYGISVDIRHLSLIADFMTHSGGYRPMSRYG-MAVSTSPFSKMSFETASTFIVEAAYHG 940
              YG+ +D RHLSLIADFMTH+GGY+PMSR+G ++ S SPF KMSFETAS FIVEAA HG
Sbjct: 1585 GIYGVEIDFRHLSLIADFMTHTGGYQPMSRHGSISESLSPFLKMSFETASKFIVEAAAHG 1644

Query: 941  EVDDLESPSARICLGLPVKMGTGCFDLMQKL 1033
              D+LE+PS+RICLGLPVKMGTGCFD+MQ+L
Sbjct: 1645 LTDNLETPSSRICLGLPVKMGTGCFDIMQEL 1675


>ref|XP_006493898.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Citrus
            sinensis]
          Length = 1715

 Score =  290 bits (743), Expect = 6e-76
 Identities = 175/373 (46%), Positives = 223/373 (59%), Gaps = 30/373 (8%)
 Frame = +2

Query: 8    SSKDTDEGDTGSKSQQVXXXXXXXXXXXXXXXXXXXLGVDAQKRRRQATDEMDYEDAXXX 187
            +S +TD+  +G+ SQ                     LG+DA K++++ATDE DYED    
Sbjct: 1351 ASNETDQDGSGNVSQ---CRGDDDDADDADGEEAEDLGMDAHKQKQRATDEKDYEDGSEE 1407

Query: 188  XXXXXXXXXQSVGFESEIDQVDVE-DDNSVDGEIQ-------IFDGEDESRRGPVXXXXX 343
                      + GF SEIDQ + E DD+  + EI+       I   +D++          
Sbjct: 1408 EMNDGV---SAAGFGSEIDQAESEIDDDQAETEIEDDRATNEIETSQDQASENLKPFTPK 1464

Query: 344  XXXXXXXXXDKEXXXXXXXXXXXXXDNDRAVFVEAKGLEFEVHFRFTNEPHILLAQIAQK 523
                      K              D DRA++V A+G+ FE HF+F NEP+ILLAQIA+ 
Sbjct: 1465 SSKKKSKSKSKRKKARAKLVKK---DTDRAIYVAARGMHFEAHFKFINEPNILLAQIARH 1521

Query: 524  TAKKVYIKRSGNIEQCSV--------------------IKHDNRD-TPALQTAGVNFPAF 640
             AKKVYI+ SG I+QC V                    IK + ++   AL T GV+F AF
Sbjct: 1522 VAKKVYIQSSGKIDQCQVTNCKESQVIYYGKDPKTREDIKPEEKEKVQALHTTGVDFHAF 1581

Query: 641  WNMQDDLDIRNIVSNDIHAVLRTFGVEAARATIIKEVMNVFEPYGISVDIRHLSLIADFM 820
            W +QD +D+R I SN+I A+L T+GVEAAR TII+E+ +VF  YGISV+ RHLSLIADFM
Sbjct: 1582 WRLQDFIDVRYIYSNNIQAMLETYGVEAARETIIREIKHVFGSYGISVNTRHLSLIADFM 1641

Query: 821  THSGGYRPMSRY-GMAVSTSPFSKMSFETASTFIVEAAYHGEVDDLESPSARICLGLPVK 997
            THSGGYRPMSR  G+A S SPFSKM+FETAS FIVEAA +G+VD L++PSARICLGLPVK
Sbjct: 1642 THSGGYRPMSRLGGIAESVSPFSKMTFETASKFIVEAASYGQVDKLDTPSARICLGLPVK 1701

Query: 998  MGTGCFDLMQKLQ 1036
            MGTG FDLMQKL+
Sbjct: 1702 MGTGSFDLMQKLE 1714


>ref|XP_006421454.1| hypothetical protein CICLE_v10004132mg [Citrus clementina]
            gi|557523327|gb|ESR34694.1| hypothetical protein
            CICLE_v10004132mg [Citrus clementina]
          Length = 1715

 Score =  288 bits (737), Expect = 3e-75
 Identities = 168/337 (49%), Positives = 212/337 (62%), Gaps = 30/337 (8%)
 Frame = +2

Query: 116  LGVDAQKRRRQATDEMDYEDAXXXXXXXXXXXXQSVGFESEIDQVDVE-DDNSVDGEIQ- 289
            LG+DA K++++ATDE DYED              + GF SEIDQ + E DD+  + EI+ 
Sbjct: 1384 LGMDAHKQKQRATDEKDYEDGSEGEMNDGV---SAAGFGSEIDQAESEIDDDQAETEIED 1440

Query: 290  ------IFDGEDESRRGPVXXXXXXXXXXXXXXDKEXXXXXXXXXXXXXDNDRAVFVEAK 451
                  I + +D++                    K              D DRA++V A+
Sbjct: 1441 DRATNEIENSQDQASENLKPFTPKSSKKKSKSKTKRKKARAKLVKK---DTDRAIYVAAR 1497

Query: 452  GLEFEVHFRFTNEPHILLAQIAQKTAKKVYIKRSGNIEQCSV------------------ 577
            G+ FE HF+F NEP+ILLAQIA+  AKKVYI+ SG I+QC V                  
Sbjct: 1498 GMHFEAHFKFINEPNILLAQIARHVAKKVYIQSSGKIDQCQVTNCKESQVIYYGKDPKKR 1557

Query: 578  --IKHDNRD-TPALQTAGVNFPAFWNMQDDLDIRNIVSNDIHAVLRTFGVEAARATIIKE 748
              IK + ++   AL T GV+F AFW +QD +D+R I SN+I A+L T+GVEAAR TII+E
Sbjct: 1558 EDIKPEEKEKVQALHTTGVDFHAFWQLQDFIDVRYIYSNNIQAMLETYGVEAARETIIRE 1617

Query: 749  VMNVFEPYGISVDIRHLSLIADFMTHSGGYRPMSRY-GMAVSTSPFSKMSFETASTFIVE 925
            + +VF  YGISV+ RHLSLIADFMTHSGGYRPMSR  G+A S SPFSKM+FE AS FIVE
Sbjct: 1618 IKHVFGSYGISVNTRHLSLIADFMTHSGGYRPMSRLGGIAESVSPFSKMTFEIASKFIVE 1677

Query: 926  AAYHGEVDDLESPSARICLGLPVKMGTGCFDLMQKLQ 1036
            AA +G+VD L++PSARICLGLPVKMGTG FDLMQKL+
Sbjct: 1678 AASYGQVDKLDTPSARICLGLPVKMGTGSFDLMQKLE 1714


>ref|XP_003607990.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
            gi|355509045|gb|AES90187.1| DNA-directed RNA polymerase
            subunit beta [Medicago truncatula]
          Length = 1628

 Score =  285 bits (730), Expect = 2e-74
 Identities = 158/329 (48%), Positives = 204/329 (62%), Gaps = 23/329 (6%)
 Frame = +2

Query: 119  GVDAQKRRRQATDEMDYEDAXXXXXXXXXXXXQSVGFESEIDQVDVEDDNSVD--GEIQI 292
            G DAQK +++ATDE+DY+D             +S   E   D  D EDDN V+  G+   
Sbjct: 1316 GFDAQKSKQRATDEVDYDDGPEEETHDGE---KSEDVEVSEDGKDDEDDNGVEVNGDDSD 1372

Query: 293  FDGEDESRRGPVXXXXXXXXXXXXXXDKEXXXXXXXXXXXXXDNDRAVFVEAKGLEFEVH 472
             +  D  +   +               K+               DR V+V+A G+ FE+H
Sbjct: 1373 IEVNDSDKNVTLEETSKSKKRKFEPASKKY--------------DRRVYVKAGGMRFEIH 1418

Query: 473  FRFTNEPHILLAQIAQKTAKKVYIKRSGNIEQCSVI---------------KHDN----- 592
            F+F  EPHILLAQIAQ+TA+KV I+  G + QC  I               K D+     
Sbjct: 1419 FKFIGEPHILLAQIAQRTAEKVCIQNFGKVGQCKAITCKESGVIYYGEDDSKRDDIPSSV 1478

Query: 593  -RDTPALQTAGVNFPAFWNMQDDLDIRNIVSNDIHAVLRTFGVEAARATIIKEVMNVFEP 769
                PALQT+G++F  FW M+DDL +R + SND+HA+L+ +GVEAA+  II+EV NVF+ 
Sbjct: 1479 KEKIPALQTSGIHFKTFWEMEDDLKVRYVYSNDVHAILKAYGVEAAKEVIIREVQNVFKS 1538

Query: 770  YGISVDIRHLSLIADFMTHSGGYRPMSRYGMAVSTSPFSKMSFETASTFIVEAAYHGEVD 949
            YGISV+IRHL LIADFMTHSG YRP++R G+A STSPF K+S+ETAS FIVEAA HG+VD
Sbjct: 1539 YGISVNIRHLMLIADFMTHSGSYRPLTRSGIADSTSPFVKISYETASNFIVEAARHGQVD 1598

Query: 950  DLESPSARICLGLPVKMGTGCFDLMQKLQ 1036
             LE+PS+RICLGLPVKMGTGC DL+QKL+
Sbjct: 1599 TLETPSSRICLGLPVKMGTGCIDLIQKLE 1627


>ref|XP_006381018.1| hypothetical protein POPTR_0006s05420g [Populus trichocarpa]
            gi|550335519|gb|ERP58815.1| hypothetical protein
            POPTR_0006s05420g [Populus trichocarpa]
          Length = 1132

 Score =  283 bits (724), Expect = 1e-73
 Identities = 164/349 (46%), Positives = 208/349 (59%), Gaps = 42/349 (12%)
 Frame = +2

Query: 116  LGVDAQKRRRQATDEMDYEDAXXXXXXXXXXXXQSV----GFESEIDQVDVEDDNS---- 271
            LG+D QKR++Q TDEMDY+D                    G ES+ +  D E + S    
Sbjct: 783  LGLDVQKRKQQVTDEMDYDDGSEGVLNEDEGDLSGSQAPSGSESDTEPADKESEISNTDM 842

Query: 272  VDGEIQIFD--------GEDESRR----GPVXXXXXXXXXXXXXXDKEXXXXXXXXXXXX 415
            VD + + F+         + +SR+                      ++            
Sbjct: 843  VDYDSEYFEKPTHLGNYSKPKSRKKTSESSSQVEMHSKLKSTEKKKQKAKGKKVRSKLVK 902

Query: 416  XDNDRAVFVEAKGLEFEVHFRFTNEPHILLAQIAQKTAKKVYIKRSGNIEQCSVIK---- 583
             D DR++FVEAKGL FE+H +FTNEPHILLA+IAQKTAKKV I+  G +++C V      
Sbjct: 903  KDFDRSIFVEAKGLHFEIHLKFTNEPHILLAEIAQKTAKKVCIQNPGKVQRCQVTDCKEN 962

Query: 584  -----------------HDNRDTPALQTAGVNFPAFWNMQDDLDIRNIVSNDIHAVLRTF 712
                              + +  PAL T GV+F  FW MQD LD+R + SN IH +L+ +
Sbjct: 963  QVIYYGKDPKRRIDIEPGEKQKIPALHTIGVDFNTFWKMQDHLDVRYMYSNSIHGMLKAY 1022

Query: 713  GVEAARATIIKEVMNVFEPYGISVDIRHLSLIADFMTHSGGYRPMSRY-GMAVSTSPFSK 889
            GVEAAR TII+E+ +VF  YGISV+ RHLSLIAD+MTH+G YRPMSR  G++ S SP SK
Sbjct: 1023 GVEAARETIIREIKHVFNSYGISVNTRHLSLIADYMTHTGEYRPMSRIGGISESISPLSK 1082

Query: 890  MSFETASTFIVEAAYHGEVDDLESPSARICLGLPVKMGTGCFDLMQKLQ 1036
            MSFETAS FIVEAA HGEVD+LE+PSAR+CLGLPVKMGTG FDLMQKL+
Sbjct: 1083 MSFETASKFIVEAALHGEVDNLEAPSARVCLGLPVKMGTGSFDLMQKLE 1131


>ref|XP_004513648.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Cicer
            arietinum]
          Length = 1650

 Score =  280 bits (715), Expect = 1e-72
 Identities = 160/330 (48%), Positives = 206/330 (62%), Gaps = 23/330 (6%)
 Frame = +2

Query: 116  LGVDAQKRRRQATDEMDYEDAXXXXXXXXXXXXQSV-GFESEIDQVDVEDDNSVDGEIQI 292
            LG+DAQK +RQ  D++DY+D             + + G E   D   V+DD   DG+   
Sbjct: 1323 LGLDAQKSKRQVVDDVDYDDGPEEETLEDGELSEDLEGVEDAKDNEYVKDDG--DGKDDE 1380

Query: 293  FDGEDESRRGPVXXXXXXXXXXXXXXDKEXXXXXXXXXXXXXDNDRAVFVEAKGLEFEVH 472
             DG+ +     +                +               DR V+V+ +   FE+H
Sbjct: 1381 -DGKGDEDGSDIEVNENDKKVTLGANYSQGPEENSKSQPVSKKFDRRVYVKFEKRHFEIH 1439

Query: 473  FRFTNEPHILLAQIAQKTAKKVYIKRSGNIEQCS--------VIKHDNRDT--------- 601
            F+FT EPHILLAQIAQKTA+KV I+  G + QC         VI +   D+         
Sbjct: 1440 FKFTGEPHILLAQIAQKTAEKVCIQNFGKVGQCKAITCKESGVIYYGEDDSKREEIPSSV 1499

Query: 602  ----PALQTAGVNFPAFWNMQDDLDIRNIVSNDIHAVLRTFGVEAARATIIKEVMNVFEP 769
                PALQT+G++F +FW MQDDL++R + SN++HA+L T+GVEAA+ TII+EV NVF+ 
Sbjct: 1500 KEKIPALQTSGIHFKSFWEMQDDLNVRYVYSNNVHAILSTYGVEAAKETIIREVQNVFKS 1559

Query: 770  YGISVDIRHLSLIADFMTHSGGYRPMSRYG-MAVSTSPFSKMSFETASTFIVEAAYHGEV 946
            YGISV+IRHL LIADFMTHSG YRPMSR G +A STSPF K+ FETAS FIVEAA HG+V
Sbjct: 1560 YGISVNIRHLMLIADFMTHSGCYRPMSRKGSIADSTSPFLKICFETASNFIVEAACHGQV 1619

Query: 947  DDLESPSARICLGLPVKMGTGCFDLMQKLQ 1036
            D+L+SPSARICLGLPVKMGTGC +L+QKL+
Sbjct: 1620 DNLDSPSARICLGLPVKMGTGCHELIQKLE 1649