BLASTX nr result
ID: Akebia22_contig00004521
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Akebia22_contig00004521
(2256 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006828249.1| hypothetical protein AMTR_s00023p00196820 [A... 1110 0.0
ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III s... 1107 0.0
ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group] g... 1067 0.0
ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III s... 1055 0.0
ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III s... 1049 0.0
ref|XP_004976057.1| PREDICTED: DNA-directed RNA polymerase III s... 1040 0.0
gb|EXB53229.1| DNA-directed RNA polymerase III subunit RPC1 [Mor... 1038 0.0
ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [S... 1037 0.0
ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III s... 1028 0.0
ref|XP_004251448.1| PREDICTED: DNA-directed RNA polymerase III s... 1023 0.0
ref|XP_004294640.1| PREDICTED: DNA-directed RNA polymerase III s... 1018 0.0
ref|XP_003574945.1| PREDICTED: DNA-directed RNA polymerase III s... 1016 0.0
ref|XP_002531828.1| DNA-directed RNA polymerase III largest subu... 1016 0.0
ref|XP_006488216.1| PREDICTED: DNA-directed RNA polymerase III s... 1016 0.0
ref|XP_007036220.1| DNA-directed RNA polymerase [Theobroma cacao... 1014 0.0
ref|XP_002985715.1| hypothetical protein SELMODRAFT_446351 [Sela... 1011 0.0
ref|XP_002300065.1| DNA-directed RNA polymerase family protein [... 1000 0.0
ref|XP_002974416.1| hypothetical protein SELMODRAFT_442419 [Sela... 999 0.0
ref|XP_003539102.1| PREDICTED: DNA-directed RNA polymerase III s... 991 0.0
ref|XP_001757221.1| predicted protein [Physcomitrella patens] gi... 989 0.0
>ref|XP_006828249.1| hypothetical protein AMTR_s00023p00196820 [Amborella trichopoda]
gi|548832896|gb|ERM95665.1| hypothetical protein
AMTR_s00023p00196820 [Amborella trichopoda]
Length = 1383
Score = 1110 bits (2871), Expect = 0.0
Identities = 561/755 (74%), Positives = 637/755 (84%), Gaps = 5/755 (0%)
Frame = +3
Query: 3 LMLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDAMDHVD 182
LMLMGVQ+NLCTPKNGEILVASTQDFLTSS+LITRKDTFYDRA FSLMCSYMGD M+++D
Sbjct: 514 LMLMGVQHNLCTPKNGEILVASTQDFLTSSYLITRKDTFYDRATFSLMCSYMGDGMENID 573
Query: 183 LPTPALIKPIELWTGKQLFSVLVRPSANMRVYLNLTVLEKNYSKSGETMCPNDGFVYFRN 362
LPTPAL+KP+ELWTGKQLFSVL+RP A+M+VY+NL+++EKNYSK GETMC NDGFVY RN
Sbjct: 574 LPTPALLKPVELWTGKQLFSVLIRPHAHMKVYVNLSLMEKNYSKGGETMCANDGFVYIRN 633
Query: 363 SELVCGQLGKATLGNGNKDGLFSVLLRDYNAHAAASCMNRLAKLSARWIGNHGFSIGIDD 542
SEL+ GQLGKATLGNGNKDGLFSVLLRDYN+HAAASCMNRLAKLSARWIGNHGFSIGIDD
Sbjct: 634 SELISGQLGKATLGNGNKDGLFSVLLRDYNSHAAASCMNRLAKLSARWIGNHGFSIGIDD 693
Query: 543 VQPRGNLNREKKYSIEKGYEACDKLIQSYDKGQLKLQPGCDAAQTLEAEITGVLNGIREA 722
V P +L ++K+ I+ GY CD I +YDKG+L L+PGC+AAQTLEAEIT VLNGIR+A
Sbjct: 694 VLPGSHLTKQKEEQIKGGYSNCDAFIDAYDKGKLSLKPGCNAAQTLEAEITRVLNGIRDA 753
Query: 723 TAKVCMDELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFP 902
AKVCM+ELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFP
Sbjct: 754 AAKVCMEELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFP 813
Query: 903 RKSKTPAAKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDL 1082
R KTPAAKGFVANSFYTGLTA EFFFHTMGGREGLVDTAVKTADTGY+SRRLIK+LEDL
Sbjct: 814 RNDKTPAAKGFVANSFYTGLTAAEFFFHTMGGREGLVDTAVKTADTGYLSRRLIKSLEDL 873
Query: 1083 SIHYDDTVRNSSGGVIQFHYGDDGMDPAQMEGKNGVPLNLDRLYLKIKATCPSTTHANLS 1262
S HYDDTVRNSSG +IQF YGDDGMDPA+MEGK+GVPLNLDRL++KIKATCP++ A+LS
Sbjct: 874 STHYDDTVRNSSGTIIQFSYGDDGMDPAKMEGKSGVPLNLDRLFMKIKATCPASVSASLS 933
Query: 1263 PSEVLEIVNNRLSRHDMTPEGGCSDAFKKSLLDFFHKRITTMKNTRRLLQLDEEHVDKNN 1442
PSE+ IVN+RLS+HDMTPE GCS AFK+ L +F KR+ +K TR +L LDE+ VDK
Sbjct: 934 PSEISTIVNDRLSKHDMTPERGCSMAFKEELSNFIKKRMDAIKKTRNMLGLDEDCVDKEK 993
Query: 1443 SVFLEKVAANISGVTSQQLQVFLETCITRYHLKKXXXXXXXXXXXXXXXXEPGTQMTLKT 1622
LE VAANISG++ QQL+VFLETCI+RYHLK+ EPGTQMTLKT
Sbjct: 994 FSGLEHVAANISGISRQQLRVFLETCISRYHLKRIEAGTAIGAIGAQSIGEPGTQMTLKT 1053
Query: 1623 FHFAGVASMNITLGVPRIKEIINGAKNISTPIITATLECDNDVKSARIVKGCIEKTVLGE 1802
FHFAGVASMNITLGVPRIKEI+ +K ISTPIITATL CDND KSARIVKG IEKT+LGE
Sbjct: 1054 FHFAGVASMNITLGVPRIKEILGASKKISTPIITATLVCDNDEKSARIVKGRIEKTLLGE 1113
Query: 1803 VAKSMKIVLTSRYASIVVTLDMERIQASQLRISAHSVKQSILQH-----PRTKLKPQHVE 1967
VAK++KI +T ASI +TLDM+RI+A Q+ I A +V SI ++ RTKLK +
Sbjct: 1114 VAKTVKISVTPTQASINITLDMKRIEALQMAIDAKTVADSISENLKAKVSRTKLKVKPTF 1173
Query: 1968 ILNDQKLRIHPPNADRSKLHFELHSYKAMLPKVIVKGISSVERAVINKNKGKYNLLVEGK 2147
L D KL+I P R ++ + LH +++LPK+IVKGI +VERAVIN KGK NLLVEG
Sbjct: 1174 TLPD-KLKILLPEIGRKEVLYSLHLLQSLLPKIIVKGIPTVERAVINNVKGKLNLLVEGT 1232
Query: 2148 NLRAVMGTPGVDGCKTTSNHIIEVQERLGIEAARK 2252
NL AVMGTPGVDG TTSNHI+EV+ LGIEAARK
Sbjct: 1233 NLLAVMGTPGVDGRNTTSNHIVEVEGTLGIEAARK 1267
>ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Vitis
vinifera]
Length = 1383
Score = 1107 bits (2864), Expect = 0.0
Identities = 566/754 (75%), Positives = 639/754 (84%), Gaps = 3/754 (0%)
Frame = +3
Query: 3 LMLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDAMDHVD 182
LMLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGD MD VD
Sbjct: 518 LMLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDLVD 577
Query: 183 LPTPALIKPIELWTGKQLFSVLVRPSANMRVYLNLTVLEKNYSK--SGETMCPNDGFVYF 356
LPTPA+IKP+ELWTGKQLF+VL+RP AN+RVYLNLTV+EK Y+K ETMCP+DGFVYF
Sbjct: 578 LPTPAIIKPVELWTGKQLFNVLLRPHANVRVYLNLTVMEKTYNKRRGKETMCPSDGFVYF 637
Query: 357 RNSELVCGQLGKATLGNGNKDGLFSVLLRDYNAHAAASCMNRLAKLSARWIGNHGFSIGI 536
RNSEL+ GQLGKATLGNGNKDGLFSVLLRDYNAHAAA+CMNRLAKLSARWIGNHGFSIGI
Sbjct: 638 RNSELISGQLGKATLGNGNKDGLFSVLLRDYNAHAAAACMNRLAKLSARWIGNHGFSIGI 697
Query: 537 DDVQPRGNLNREKKYSIEKGYEACDKLIQSYDKGQLKLQPGCDAAQTLEAEITGVLNGIR 716
DDVQP G LN +K IE+GYE C +LIQ Y+KG+LKLQPGC+AAQTLEAEITGVLN IR
Sbjct: 698 DDVQPGGLLNDQKSKRIEEGYENCHELIQQYNKGKLKLQPGCNAAQTLEAEITGVLNKIR 757
Query: 717 EATAKVCMDELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPH 896
E TA VCM+ELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAP+GFIDR+LPH
Sbjct: 758 ETTANVCMEELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPDGFIDRTLPH 817
Query: 897 FPRKSKTPAAKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALE 1076
FPRKSKTP AKGFVA+SFYTGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRL+KALE
Sbjct: 818 FPRKSKTPDAKGFVASSFYTGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALE 877
Query: 1077 DLSIHYDDTVRNSSGGVIQFHYGDDGMDPAQMEGKNGVPLNLDRLYLKIKATCPSTTHAN 1256
DLSI YD+TVRN++G ++QF YGDDGMDPA+MEGK+G PLN +RL+LK+KATCP+ +A+
Sbjct: 878 DLSIQYDETVRNANGSIVQFLYGDDGMDPARMEGKDGFPLNFNRLFLKVKATCPAGENAS 937
Query: 1257 LSPSEVLEIVNNRLSRHDMTPEGGCSDAFKKSLLDFFHKRITTMKNTRRLLQLDEEHVDK 1436
LS ++ E V RL H+ + E GCSDAFK +L F + KNTR L L EHV +
Sbjct: 938 LSALQIEETV-KRLKEHNTSAE-GCSDAFKTNLSGFLEECKEKFKNTREALGLHGEHVGE 995
Query: 1437 NNSVFLEKVAANISGVTSQQLQVFLETCITRYHLKKXXXXXXXXXXXXXXXXEPGTQMTL 1616
N EK A NISG+TS+QLQVFL+TCI+RY LK+ EPGTQMTL
Sbjct: 996 ENLDIQEKFAKNISGITSKQLQVFLDTCISRYQLKRIEAGTAIGAIGAHSIGEPGTQMTL 1055
Query: 1617 KTFHFAGVASMNITLGVPRIKEIINGAKNISTPIITATLECDNDVKSARIVKGCIEKTVL 1796
KTFHFAGVASMN+TLGVPRIKEIINGAK ISTPIITA LEC+N+VK+AR+VKG IE+T L
Sbjct: 1056 KTFHFAGVASMNVTLGVPRIKEIINGAKRISTPIITAALECNNNVKTARMVKGRIERTTL 1115
Query: 1797 GEVAKSMKIVLTSRYASIVVTLDMERIQASQLRISAHSVKQSILQHPRTKLKPQHVEILN 1976
G+VAKS+KIVLTSR A I V LDME IQASQL I ++ V++SIL++ R KLK QH+++L+
Sbjct: 1116 GQVAKSIKIVLTSRLALIAVALDMEGIQASQLSIDSNIVRESILRNRRIKLKQQHIKVLD 1175
Query: 1977 DQKLRIHPPNADRSKLHFELHSYKAMLPKVIVKGISSVERAVINK-NKGKYNLLVEGKNL 2153
KL +H P DRS +HFELH+ K +LP V+VKGI +VERAVINK NK KYNLLVEG L
Sbjct: 1176 AGKLEVH-PQGDRSTIHFELHALKNLLPTVVVKGIETVERAVINKDNKVKYNLLVEGTGL 1234
Query: 2154 RAVMGTPGVDGCKTTSNHIIEVQERLGIEAARKC 2255
+ VMGT GV G +TTSNHIIEVQ+ LGIEAARKC
Sbjct: 1235 QTVMGTEGVIGRETTSNHIIEVQQTLGIEAARKC 1268
>ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group]
gi|38346223|emb|CAE02045.2| OJ990528_30.3 [Oryza sativa
Japonica Group] gi|38347455|emb|CAD41360.2|
OSJNBa0076N16.24 [Oryza sativa Japonica Group]
gi|113564746|dbj|BAF15089.1| Os04g0492300 [Oryza sativa
Japonica Group] gi|116310339|emb|CAH67354.1|
OSIGBa0130B08.14 [Oryza sativa Indica Group]
gi|116310740|emb|CAH67535.1| H0425E08.3 [Oryza sativa
Indica Group] gi|215768005|dbj|BAH00234.1| unnamed
protein product [Oryza sativa Japonica Group]
gi|218195112|gb|EEC77539.1| hypothetical protein
OsI_16437 [Oryza sativa Indica Group]
Length = 1383
Score = 1067 bits (2759), Expect = 0.0
Identities = 536/760 (70%), Positives = 623/760 (81%), Gaps = 10/760 (1%)
Frame = +3
Query: 3 LMLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDAMDHVD 182
LMLMGVQNNLCTPKNGEILVASTQDFLTSSFL+TRKD FYDR++FSL+CSY+GDAM+++D
Sbjct: 508 LMLMGVQNNLCTPKNGEILVASTQDFLTSSFLVTRKDNFYDRSSFSLLCSYLGDAMENID 567
Query: 183 LPTPALIKPIELWTGKQLFSVLVRPSANMRVYLNLTVLEKNYSK------SGETMCPNDG 344
LPTPALIKPIELWTGKQLFSVLVRP+A +V+LNLTV EK Y E MCPNDG
Sbjct: 568 LPTPALIKPIELWTGKQLFSVLVRPNACTKVFLNLTVKEKIYKTPKGSTLEPEAMCPNDG 627
Query: 345 FVYFRNSELVCGQLGKATLGNGNKDGLFSVLLRDYNAHAAASCMNRLAKLSARWIGNHGF 524
FVYFRNSEL+ GQ+GKATLGNGNKDG+FS L+RDYN+HAAASCMNRLAK SAR+IGNHGF
Sbjct: 628 FVYFRNSELLSGQVGKATLGNGNKDGMFSTLVRDYNSHAAASCMNRLAKFSARFIGNHGF 687
Query: 525 SIGIDDVQPRGNLNREKKYSIEKGYEACDKLIQSYDKGQLKLQPGCDAAQTLEAEITGVL 704
SIG+DDVQP +LN+EKK I+ GY+ C LI SY KG L+LQPGC+AAQTLE IT VL
Sbjct: 688 SIGVDDVQPGEHLNQEKKMKIDGGYKDCHDLIASYSKGALRLQPGCNAAQTLEQSITRVL 747
Query: 705 NGIREATAKVCMDELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDR 884
N IRE KVCM+ LHWRNSPLIMSQCGSKGSPINISQM+ACVGQQSVGGRRAPNGFIDR
Sbjct: 748 NEIREEAGKVCMNTLHWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDR 807
Query: 885 SLPHFPRKSKTPAAKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLI 1064
+LPHFP SKTPAAKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTA+TGYMSRRL+
Sbjct: 808 TLPHFPINSKTPAAKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLM 867
Query: 1065 KALEDLSIHYDDTVRNSSGGVIQFHYGDDGMDPAQMEGKNGVPLNLDRLYLKIKATCPST 1244
K LEDLS+ YD TVRN+SGG++QF YGDDGMDPA+MEGK+G PLNLD+L++K+ ATCP
Sbjct: 868 KGLEDLSVFYDQTVRNASGGIVQFLYGDDGMDPAKMEGKDGKPLNLDQLFMKVMATCPQR 927
Query: 1245 THANLSPSEVLEIVNNRLSRHDMTPEGGCSDAFKKSLLDFFHKRITTMKNTRRLLQLDEE 1424
LSP E+L+I+N++LS HD + + GCS+ FK+ L F RI +K+TRR L LDE+
Sbjct: 928 GQNTLSPGEILQILNDKLSEHDASSDDGCSEKFKQLLTYFLEDRIKLLKSTRRALLLDED 987
Query: 1425 HVDKNNSVFLEKVAANISGVTSQQLQVFLETCITRYHLKKXXXXXXXXXXXXXXXXEPGT 1604
HV + +S F E +AANISG++ +QLQVFL+TC++RYHLKK EPGT
Sbjct: 988 HVGERHSSFEESIAANISGISVKQLQVFLDTCLSRYHLKKIEAGASIGAIGAQSIGEPGT 1047
Query: 1605 QMTLKTFHFAGVASMNITLGVPRIKEIINGAKNISTPIITATLECDNDVKSARIVKGCIE 1784
QMTLKTFHFAGVASMN+TLGVPRIKEIIN AK ISTPIITA L + DV SARIVKG +E
Sbjct: 1048 QMTLKTFHFAGVASMNVTLGVPRIKEIINAAKKISTPIITAELLSEKDVLSARIVKGSME 1107
Query: 1785 KTVLGEVAKSMKIVLTSRYASIVVTLDMERIQASQLRISAHSVKQSILQHPRTKLKPQHV 1964
K VLGEVA+++KIVL S ++VV LDM+RI+A + ISA SV+ SIL HP+ KLK +HV
Sbjct: 1108 KAVLGEVAEAIKIVLKSSQPNLVVKLDMQRIEALHMGISADSVQLSILNHPKIKLKSEHV 1167
Query: 1965 EILNDQKLRIHPPNADRSKLHFELHSYKAMLPKVIVKGISSVERAVIN----KNKGKYNL 2132
+++ KLRI+P D+SKL +ELH K+MLPKVIVKGI +VERAVI+ +N +Y L
Sbjct: 1168 RVIDKSKLRIYPAGIDKSKLLYELHHLKSMLPKVIVKGIPTVERAVISETGEENDKRYKL 1227
Query: 2133 LVEGKNLRAVMGTPGVDGCKTTSNHIIEVQERLGIEAARK 2252
LVEG NL AVMGTPGVD KT SNHI+EV LGIEAAR+
Sbjct: 1228 LVEGTNLLAVMGTPGVDAMKTKSNHIMEVNRTLGIEAARR 1267
>ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Oryza
brachyantha]
Length = 1389
Score = 1055 bits (2728), Expect = 0.0
Identities = 527/767 (68%), Positives = 624/767 (81%), Gaps = 17/767 (2%)
Frame = +3
Query: 3 LMLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDAMDHVD 182
LMLMGVQNNLCTPKNGEILVASTQDFLTSSFL+TRKD FYDR++F+L+CSY+GDAM+++D
Sbjct: 508 LMLMGVQNNLCTPKNGEILVASTQDFLTSSFLVTRKDNFYDRSSFTLLCSYLGDAMENID 567
Query: 183 LPTPALIKPIELWTGKQLFSVLVRPSANMRVYLNLTVLEKNYSKSGETMCPNDGFVYFRN 362
LPTPAL+KPIELWTGKQLFSVLVRP+A +V+LNLTV EK YSKS ETMCPNDGFVYFRN
Sbjct: 568 LPTPALVKPIELWTGKQLFSVLVRPNACTKVFLNLTVKEKIYSKSRETMCPNDGFVYFRN 627
Query: 363 SELVCGQLGKATLGNGNKDGLFSVLLRDYNAHAAASCMNRLAKLSARWIGNHGFSIGIDD 542
SEL+ GQ+GK TLGNGNKDG+FS+L+RDYN+HAAASCMNRLAK SAR+IGNHGFSIG+DD
Sbjct: 628 SELLSGQVGKKTLGNGNKDGMFSILVRDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDD 687
Query: 543 VQPRGNLNREKKYSIEKGYEACDKLIQSYDKGQLKLQPGCDAAQTLEAEITGVLNGIREA 722
V+P +L+++KK I++GY+ C LI S+ KG L LQPGC+AAQTLE +IT VLN IREA
Sbjct: 688 VRPGEHLDQQKKKKIDEGYKECHDLITSFSKGALTLQPGCNAAQTLEHKITHVLNKIREA 747
Query: 723 TAKVCMDELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFP 902
+CMD LHWRNSPLIMSQCGSKGSPINISQM+ CVGQQSVGG RAPNGFIDR+LPHFP
Sbjct: 748 AGNICMDTLHWRNSPLIMSQCGSKGSPINISQMVVCVGQQSVGGHRAPNGFIDRTLPHFP 807
Query: 903 RKSKTPAAKGFVANSFYTGLT-----------------ATEFFFHTMGGREGLVDTAVKT 1031
SKTPAAKGFVANSFY GLT ATEFFFHTMGGREGLVDTAVKT
Sbjct: 808 INSKTPAAKGFVANSFYNGLTATEFFFHTMGGIYIVLPATEFFFHTMGGREGLVDTAVKT 867
Query: 1032 ADTGYMSRRLIKALEDLSIHYDDTVRNSSGGVIQFHYGDDGMDPAQMEGKNGVPLNLDRL 1211
A+TGYMSRRL+K LEDLS+ YD TVRN+SGG++QF YGDDGMDPA+MEG++G PLNLD+L
Sbjct: 868 AETGYMSRRLMKGLEDLSVFYDQTVRNASGGIVQFLYGDDGMDPAKMEGEDGKPLNLDQL 927
Query: 1212 YLKIKATCPSTTHANLSPSEVLEIVNNRLSRHDMTPEGGCSDAFKKSLLDFFHKRITTMK 1391
++K+ ATCP LSP E+L+I+N++LS HD + + GCS+ FK+ L DF RI +K
Sbjct: 928 FMKVMATCPQRGQNTLSPGEILQILNDKLSEHDASSDDGCSEKFKQLLKDFLEDRIKLLK 987
Query: 1392 NTRRLLQLDEEHVDKNNSVFLEKVAANISGVTSQQLQVFLETCITRYHLKKXXXXXXXXX 1571
+TRR L LDE HV K++S+ E +AANISG++++QLQVFL+TC++RYH KK
Sbjct: 988 STRRALCLDENHVGKDSSI-EESIAANISGISAKQLQVFLDTCLSRYHSKKIEAGASIGA 1046
Query: 1572 XXXXXXXEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINGAKNISTPIITATLECDNDV 1751
EPGTQMTLKTFHFAGVASMN+TLGVPRIKEIIN AK ISTPIITA L DV
Sbjct: 1047 IGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAAKKISTPIITAELLSGKDV 1106
Query: 1752 KSARIVKGCIEKTVLGEVAKSMKIVLTSRYASIVVTLDMERIQASQLRISAHSVKQSILQ 1931
SAR+VKG +EK VLGEVA+ +KIVL S ++VV LDM+RI+ + ISA SV+ SIL
Sbjct: 1107 LSARVVKGSMEKAVLGEVAEDIKIVLKSSQPNLVVKLDMQRIEDLHMGISADSVQLSILN 1166
Query: 1932 HPRTKLKPQHVEILNDQKLRIHPPNADRSKLHFELHSYKAMLPKVIVKGISSVERAVINK 2111
HPR KLK +HV +++ KLR++P D+SKL +ELH+ K+MLPKVIVKGI +VERAVI++
Sbjct: 1167 HPRIKLKSEHVRVIDKAKLRVYPTAIDKSKLLYELHNLKSMLPKVIVKGIPTVERAVISQ 1226
Query: 2112 NKGKYNLLVEGKNLRAVMGTPGVDGCKTTSNHIIEVQERLGIEAARK 2252
KY+LLVEG NL AVMGTPGVD KT SNHI+EV LGIEAAR+
Sbjct: 1227 TGDKYSLLVEGTNLLAVMGTPGVDAMKTKSNHIMEVNRTLGIEAARR 1273
>ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Cucumis
sativus]
Length = 1400
Score = 1049 bits (2713), Expect = 0.0
Identities = 538/772 (69%), Positives = 618/772 (80%), Gaps = 21/772 (2%)
Frame = +3
Query: 3 LMLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDAMDHVD 182
++LMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGD MD VD
Sbjct: 514 ILLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDLVD 573
Query: 183 LPTPALIKPIELWTGKQLFSVLVRPSANMRVYLNLTVLEKNYSK------SGETMCPNDG 344
LPTPAL+KPIELWTGKQLFSVLVRP A+M+VYLNLTV EK+YSK ETMCPNDG
Sbjct: 574 LPTPALVKPIELWTGKQLFSVLVRPHASMKVYLNLTVKEKSYSKVKGNEKERETMCPNDG 633
Query: 345 FVYFRNSELVCGQLGKATLGNGNKDGLFSVLLRDYNAHAAASCMNRLAKLSARWIGNHGF 524
FVYFRNSEL+ GQ+GKATLGNGNKDGL+SVLLRDY AHAAA CMNRLAKLSARWIGNHGF
Sbjct: 634 FVYFRNSELISGQVGKATLGNGNKDGLYSVLLRDYKAHAAAVCMNRLAKLSARWIGNHGF 693
Query: 525 SIGIDDVQPRGNLNREKKYSIEKGYEACDKLIQSYDKGQLKLQPGCDAAQTLEAEITGVL 704
SIGIDDVQP L ++K+ +I +GY CDK I ++ G L + GCDAAQ+LE++IT +L
Sbjct: 694 SIGIDDVQPGDQLVKKKQTTILEGYRDCDKQINLFNTGNLPPEAGCDAAQSLESKITQIL 753
Query: 705 NGIREATAKVCMDELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDR 884
NGIREATA VCM LHWRNSPLIMSQCGSKGSPINISQM+ACVGQQSVGGRRAP+GFIDR
Sbjct: 754 NGIREATANVCMQNLHWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPDGFIDR 813
Query: 885 SLPHFPRKSKTPAAKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLI 1064
SLPHF RK+KTPAAKGFVANSFY+GLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLI
Sbjct: 814 SLPHFRRKAKTPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLI 873
Query: 1065 KALEDLSIHYDDTVRNSSGGVIQFHYGDDGMDPAQMEGKNGVPLNLDRLYLKIKATCPST 1244
KALEDLSIHYD +VRN+ G ++QF YGDDGMDPAQMEGK+G PLN +RL+LK KATCPS
Sbjct: 874 KALEDLSIHYDSSVRNAGGCIVQFCYGDDGMDPAQMEGKSGAPLNFERLFLKAKATCPSD 933
Query: 1245 THANLSPSEVLEIVNNRLSRHDMTPEGGCSDAFKKSLLDFFHKRITTMKNTRRLLQLDEE 1424
+ LSPSE E V +RLS+ D +PE GCS AF SL F +K + K + L D E
Sbjct: 934 GNKILSPSEFSETVEDRLSKDDASPECGCSPAFVGSLKIFLNKYVEAQKKSWGTLLADNE 993
Query: 1425 HV---------DKNNSVFLEKVAANISGVTSQQLQVFLETCITRYHLKKXXXXXXXXXXX 1577
D +N V KV NI+GVT +QLQVFL+TC++RYH KK
Sbjct: 994 SAVDKSIISSSDNDNIVIRNKVVQNIAGVTHRQLQVFLDTCLSRYHTKKIEAGTAIGAIG 1053
Query: 1578 XXXXXEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINGAKNISTPIITATLECDNDVKS 1757
EPGTQMTLKTFHFAGVASMN+TLGVPRIKEIINGAK ISTPI+TA L D++V
Sbjct: 1054 AQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINGAKRISTPIVTAALTHDDNVNI 1113
Query: 1758 ARIVKGCIEKTVLGEVAKSMKIVLTSRYASIVVTLDMERIQASQLRISAHSVKQSILQHP 1937
AR+VK IEKT LG++AK ++IV++SR A I + LDME+I+ ++L + A+ VKQ+IL P
Sbjct: 1114 ARMVKARIEKTNLGQIAKCIQIVMSSRSALIEIKLDMEKIRDAELYVDANVVKQAILVTP 1173
Query: 1938 RTKLKPQHVEILNDQKLRIHPPNADRSKLHFELHSYKAMLPKVIVKGISSVERAVIN--- 2108
+ KLK +H+ +L+D+KLR+ P +ADR+KLHF LH K MLP V+VKGI +V RAVI
Sbjct: 1174 KLKLKHEHINVLDDRKLRVLPQDADRNKLHFNLHFLKNMLPGVVVKGIKTVGRAVIKEEK 1233
Query: 2109 ---KNKGKYNLLVEGKNLRAVMGTPGVDGCKTTSNHIIEVQERLGIEAARKC 2255
+N K++LLVEG L+AVMGT GVDGC T SNHIIEVQ+ LGIEAARKC
Sbjct: 1234 DKARNAKKFSLLVEGTGLQAVMGTEGVDGCNTKSNHIIEVQQVLGIEAARKC 1285
>ref|XP_004976057.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Setaria
italica]
Length = 1397
Score = 1040 bits (2689), Expect = 0.0
Identities = 524/771 (67%), Positives = 617/771 (80%), Gaps = 21/771 (2%)
Frame = +3
Query: 3 LMLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDAMDHVD 182
LMLMGVQNNLCTPKNGEILVASTQDFLTSSFL+TRKD FYDR++F+L+CSY+GDAM+++D
Sbjct: 511 LMLMGVQNNLCTPKNGEILVASTQDFLTSSFLVTRKDAFYDRSSFALLCSYVGDAMENID 570
Query: 183 LPTPALIKPIELWTGKQLFSVLVRPSANMRVYLNLTVLEKNYSKSGE------------- 323
LPTPALIKPIELWTGKQLFSVLVRP+A +V+LNL V EK YSK E
Sbjct: 571 LPTPALIKPIELWTGKQLFSVLVRPNARTKVFLNLAVKEKIYSKKKEKKEGEEEEKETMC 630
Query: 324 ---TMCPNDGFVYFRNSELVCGQLGKATLGNGNKDGLFSVLLRDYNAHAAASCMNRLAKL 494
TMCPNDG+VYFRNSEL+ GQ+GKATLGNGNKDG++SVLLRDYN+HAAASCMNRLAK
Sbjct: 631 GRETMCPNDGYVYFRNSELLSGQVGKATLGNGNKDGIYSVLLRDYNSHAAASCMNRLAKF 690
Query: 495 SARWIGNHGFSIGIDDVQPRGNLNREKKYSIEKGYEACDKLIQSYDKGQLKLQPGCDAAQ 674
SAR+IGNHGFSIG+DDVQP +LNR+KK I++GY+ C LI + KG L L PGC+AAQ
Sbjct: 691 SARFIGNHGFSIGVDDVQPGEHLNRQKKKKIDEGYKQCHDLISLFAKGALALHPGCNAAQ 750
Query: 675 TLEAEITGVLNGIREATAKVCMDELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGG 854
TLE +ITGVLN IR A VCMD LHWRNSPLIMSQCGSKGSPINISQM+ACVGQQSVGG
Sbjct: 751 TLEHKITGVLNEIRTAAGNVCMDTLHWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGG 810
Query: 855 RRAPNGFIDRSLPHFPRKSKTPAAKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTA 1034
RRAP+GFIDR+LPHFP SKTPAAKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTA
Sbjct: 811 RRAPDGFIDRTLPHFPINSKTPAAKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTA 870
Query: 1035 DTGYMSRRLIKALEDLSIHYDDTVRNSSGGVIQFHYGDDGMDPAQMEGKNGVPLNLDRLY 1214
+TGYMSRRL+K LEDLS+ YD TVRN+SGG++QF YGDDGMDPA+MEGK+G PLNLD+L+
Sbjct: 871 ETGYMSRRLMKGLEDLSVFYDQTVRNASGGIVQFLYGDDGMDPAKMEGKDGTPLNLDQLF 930
Query: 1215 LKIKATCPSTTHANLSPSEVLEIVNNRLSRHDMTPEGGCSDAFKKSLLDFFHKRITTMKN 1394
+K+ ATCP LSP ++ +++ ++L++H + +GGCS+ FK+ L F +RI +K
Sbjct: 931 MKVTATCPHRGLDTLSPDDIKQMLEDKLTQHKTSSDGGCSEEFKECLKKFLEERIQLLKC 990
Query: 1395 TRRLLQLDEEHVDKNNSVFLEKVAANISGVTSQQLQVFLETCITRYHLKKXXXXXXXXXX 1574
TR+ L LDE+HV KN+S E +AANISG++++QLQVFL+TC +RY+ K
Sbjct: 991 TRKALHLDEKHVGKNDSCIEEIIAANISGISAKQLQVFLDTCFSRYNSKAIEAGASIGAI 1050
Query: 1575 XXXXXXEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINGAKNISTPIITATLECDNDVK 1754
EPGTQMTLKTFHFAGVASMN+TLGVPRIKEIIN AK ISTPIIT L DV
Sbjct: 1051 GAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAAKKISTPIITTELLSRKDVL 1110
Query: 1755 SARIVKGCIEKTVLGEVAKSMKIVLTSRYASIVVTLDMERIQASQLRISAHSVKQSILQH 1934
SARIVKG +EK VLGEVA ++KIVL S ++VV LDM+ I+A + ISA SV+ SIL H
Sbjct: 1111 SARIVKGAMEKAVLGEVASAIKIVLKSSQPNLVVKLDMQLIEALHMGISADSVQLSILNH 1170
Query: 1935 PRTKLKPQHVEILNDQKLRIHPPNADRSKLHFELHSYKAMLPKVIVKGISSVERAVINKN 2114
P+ KLK +HV +++ KLRI+P D+SKL ELH+ KAMLPKVIVKGI +VER VI++
Sbjct: 1171 PKIKLKSEHVRVIDRAKLRIYPAGTDKSKLQLELHNLKAMLPKVIVKGIPTVERVVIDER 1230
Query: 2115 K-----GKYNLLVEGKNLRAVMGTPGVDGCKTTSNHIIEVQERLGIEAARK 2252
K KYNLLVEG NL AVMGTPGVD T SNHI+E+ LGIEAAR+
Sbjct: 1231 KKEGKLEKYNLLVEGTNLLAVMGTPGVDARNTKSNHIMEMNSTLGIEAARR 1281
>gb|EXB53229.1| DNA-directed RNA polymerase III subunit RPC1 [Morus notabilis]
Length = 1179
Score = 1038 bits (2684), Expect = 0.0
Identities = 531/765 (69%), Positives = 602/765 (78%), Gaps = 14/765 (1%)
Frame = +3
Query: 3 LMLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDAMDHVD 182
++LMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDAM+H D
Sbjct: 299 ILLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDAMEHND 358
Query: 183 LPTPALIKPIELWTGKQLFSVLVRPSANMRVYLNLTVLEKNYS-------KSGETMCPND 341
LPTPA+IKP+ELWTGKQLFSVLVRP+AN+RV+LNLTV EKNYS + ETMCP D
Sbjct: 359 LPTPAVIKPVELWTGKQLFSVLVRPNANVRVFLNLTVREKNYSNKLQENEREFETMCPAD 418
Query: 342 GFVYFRNSELVCGQLGKATLGNGNKDGLFSVLLRDYNAHAAASCMNRLAKLSARWIGNHG 521
GFV FRNSEL+ GQLGK TLGNGNKDGL+S+LLRDY AHAAA+CMNRLAKLSARWIGNHG
Sbjct: 419 GFVCFRNSELISGQLGKGTLGNGNKDGLYSILLRDYKAHAAAACMNRLAKLSARWIGNHG 478
Query: 522 FSIGIDDVQPRGNLNREKKYSIEKGYEACDKLIQSYDKGQLKLQPGCDAAQTLEAEITGV 701
FSIGIDDVQP L EK I +G + CD I+SY +G L +PGCDAAQ+LEA ITG+
Sbjct: 479 FSIGIDDVQPSDKLRDEKDQKINEGAKDCDDKIKSYKEGNLPPEPGCDAAQSLEAVITGI 538
Query: 702 LNGIREATAKVCMDELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFID 881
LN IRE T K+CM L WRNSPLIMSQCGSKGS INISQM+ACVGQQSVGGRRAPNGFID
Sbjct: 539 LNKIREETGKLCMKALPWRNSPLIMSQCGSKGSLINISQMVACVGQQSVGGRRAPNGFID 598
Query: 882 RSLPHFPRKSKTPAAKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRL 1061
RSLPHFPRK KTPAAKGFV++SFY GL+ATEFFFHTMGGREGLVDTAVKTADTGYMSRRL
Sbjct: 599 RSLPHFPRKDKTPAAKGFVSHSFYDGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRL 658
Query: 1062 IKALEDLSIHYDDTVRNSSGGVIQFHYGDDGMDPAQMEGKNGVPLNLDRLYLKIKATCPS 1241
IKALEDL +HYD+TVRN+S +IQF YGDDGMDPA MEGKNG PLN +RL+LK KATCP+
Sbjct: 659 IKALEDLFVHYDNTVRNASACIIQFCYGDDGMDPAHMEGKNGAPLNFERLFLKAKATCPA 718
Query: 1242 TTHANLSPSEVLEIVNNRLSRHDMTPEGGCSDAFKKSLLDFFHKRITTMKNTRRLLQLDE 1421
LSP +V E+V +RLS+ DMTPEGGCS AFK SL F + K T + E
Sbjct: 719 GGTEKLSPEKVSELVESRLSKKDMTPEGGCSAAFKNSLKSFLDNYVKAFKRTWDPCESTE 778
Query: 1422 EHVDKNNSVFLEKVAANISGVTSQQLQVFLETCITRYHLKKXXXXXXXXXXXXXXXXEPG 1601
H NS + + +SG T++QL+VFL+TCI+RYH KK EPG
Sbjct: 779 GHAKMENSATTKNIVLQLSGATARQLEVFLDTCISRYHSKKIEAGTAIGAIGAQSIGEPG 838
Query: 1602 TQMTLKTFHFAGVASMNITLGVPRIKEIINGAKNISTPIITATLECDNDVKSARIVKGCI 1781
TQMTLKTFHFAGVASMN+TLGVPRIKEIINGAK ISTPIITA LECDN+V ARIV+G I
Sbjct: 839 TQMTLKTFHFAGVASMNVTLGVPRIKEIINGAKKISTPIITAILECDNNVNFARIVRGRI 898
Query: 1782 EKTVLGEVAKSMKIVLTSRYASIVVTLDMERIQASQLRISAHSVKQSILQHPRTKLKPQH 1961
EK LG+VAKS+K V+TSR AS+V+TLDMERIQ + L I A+ V+ SILQ PR KLK +H
Sbjct: 899 EKISLGQVAKSIKTVMTSRVASVVITLDMERIQDALLSIDANVVRDSILQTPRIKLKKEH 958
Query: 1962 VEILNDQKLRIHPPNADRSKLHFELHSYKAMLPKVIVKGISSVERAVINKNKG------- 2120
+ +L+ +KL I P ++RSKL+ L ML ++VKGI +VERAVI+ K
Sbjct: 959 IRVLDFKKLEILPYESNRSKLYHHLQFLAKMLQNILVKGIKTVERAVISSEKDKKTDISK 1018
Query: 2121 KYNLLVEGKNLRAVMGTPGVDGCKTTSNHIIEVQERLGIEAARKC 2255
KY LLVEG L VMGT GVDG T +NHIIEVQ+ LGIEAAR C
Sbjct: 1019 KYKLLVEGTGLLGVMGTEGVDGRNTKTNHIIEVQQTLGIEAARTC 1063
>ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [Sorghum bicolor]
gi|241937900|gb|EES11045.1| hypothetical protein
SORBIDRAFT_06g021120 [Sorghum bicolor]
Length = 1391
Score = 1037 bits (2682), Expect = 0.0
Identities = 522/768 (67%), Positives = 617/768 (80%), Gaps = 18/768 (2%)
Frame = +3
Query: 3 LMLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDAMDHVD 182
LMLMGVQNNLCTPKNGEILVASTQDFLTSSFL+TRKDTFYDR++F+L+CSY+GDAM+++D
Sbjct: 508 LMLMGVQNNLCTPKNGEILVASTQDFLTSSFLVTRKDTFYDRSSFTLLCSYLGDAMENID 567
Query: 183 LPTPALIKPIELWTGKQLFSVLVRPSANMRVYLNLTVLEKNYSKSG-------------E 323
LPTPALIKPIELWTGKQLFSVLVRP+A+ RV+LNL V EK YSK E
Sbjct: 568 LPTPALIKPIELWTGKQLFSVLVRPNAHTRVFLNLAVQEKIYSKKKGKKEAGEETMCGRE 627
Query: 324 TMCPNDGFVYFRNSELVCGQLGKATLGNGNKDGLFSVLLRDYNAHAAASCMNRLAKLSAR 503
TMCPNDG+VYFRNSEL+ GQ+GKATLGNGNKDGL+SVLLRDYN+HAAASCMNRLAK SAR
Sbjct: 628 TMCPNDGYVYFRNSELLSGQVGKATLGNGNKDGLYSVLLRDYNSHAAASCMNRLAKFSAR 687
Query: 504 WIGNHGFSIGIDDVQPRGNLNREKKYSIEKGYEACDKLIQSYDKGQLKLQPGCDAAQTLE 683
+IGNHGFSIG+DDVQP +LNR+KK I+ GY+ C LI + KG L L PGC+AAQTLE
Sbjct: 688 FIGNHGFSIGVDDVQPGEHLNRQKKKEIDGGYKKCHDLISLFAKGALALHPGCNAAQTLE 747
Query: 684 AEITGVLNGIREATAKVCMDELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRA 863
ITGVLN IR VCMD LHWRNSPLIMSQCGSKGSPINISQM+ACVGQQSVGGRRA
Sbjct: 748 HNITGVLNEIRSIAGNVCMDTLHWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRA 807
Query: 864 PNGFIDRSLPHFPRKSKTPAAKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTADTG 1043
P+GF++R+LPHFP SKTPAAKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTA+TG
Sbjct: 808 PDGFLNRTLPHFPINSKTPAAKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETG 867
Query: 1044 YMSRRLIKALEDLSIHYDDTVRNSSGGVIQFHYGDDGMDPAQMEGKNGVPLNLDRLYLKI 1223
YMSRRL+K LEDLS+ YD TVRN+SGG++QF YGDDGMDPA+MEGK+G+PLNLD+L++K+
Sbjct: 868 YMSRRLMKGLEDLSVFYDQTVRNASGGIVQFLYGDDGMDPAKMEGKDGMPLNLDQLFMKV 927
Query: 1224 KATCPSTTHANLSPSEVLEIVNNRLSRHDMTPEGGCSDAFKKSLLDFFHKRITTMKNTRR 1403
ATCP LSP + +++ ++L +HD + +GGCS+ FKK+L +F KRI MK TRR
Sbjct: 928 MATCPQRGSDTLSPEAIKQMLEDKLLQHDTSSDGGCSEEFKKNLTEFLDKRIELMKCTRR 987
Query: 1404 LLQLDEEHVDKNNSVFLEKVAANISGVTSQQLQVFLETCITRYHLKKXXXXXXXXXXXXX 1583
L L E+HV+K +S E VAA ISG++++QLQVFL+TC++RY KK
Sbjct: 988 ALHLHEDHVEKKDSCVEESVAAIISGISAKQLQVFLDTCLSRYQSKKIEAGASIGAIGAQ 1047
Query: 1584 XXXEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINGAKNISTPIITATLECDNDVKSAR 1763
EPGTQMTLKTFHFAGVASMN+TLGVPRIKEIIN A+ ISTPIITA L DV SAR
Sbjct: 1048 SIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAARKISTPIITAQLLSKKDVLSAR 1107
Query: 1764 IVKGCIEKTVLGEVAKSMKIVLTSRYASIVVTLDMERIQASQLRISAHSVKQSILQHPRT 1943
IVKG +EK VLGEVA +++IVL S +++V LDM+ I++ + ISA SV+ SIL HP+
Sbjct: 1108 IVKGSMEKAVLGEVAVAIQIVLKSSQPNLIVKLDMQLIESLHMGISADSVQLSILNHPKI 1167
Query: 1944 KLKPQHVEILNDQKLRIHPPNADRSKLHFELHSYKAMLPKVIVKGISSVERAVINKNKGK 2123
KLK +HV +++ KLRI+P D+ KL ELH+ K++LPKVIVKGI +VER VI++ K K
Sbjct: 1168 KLKSEHVRVIDRAKLRIYPAGTDKRKLQLELHNLKSILPKVIVKGIPTVERVVIDEVKVK 1227
Query: 2124 -----YNLLVEGKNLRAVMGTPGVDGCKTTSNHIIEVQERLGIEAARK 2252
Y LLVEG NL AVMGTPGVD KT SNHI+E + LGIEAAR+
Sbjct: 1228 NETERYQLLVEGTNLLAVMGTPGVDATKTKSNHIMETNQTLGIEAARR 1275
>ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
X1 [Solanum tuberosum]
Length = 1394
Score = 1028 bits (2658), Expect = 0.0
Identities = 521/760 (68%), Positives = 611/760 (80%), Gaps = 11/760 (1%)
Frame = +3
Query: 3 LMLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDAMDHVD 182
LMLMGVQNNLCTPK+GEILVASTQDFLTSSFLITRKDTFY+RA+FSL+CSYMGDAMD D
Sbjct: 515 LMLMGVQNNLCTPKSGEILVASTQDFLTSSFLITRKDTFYNRASFSLICSYMGDAMDPTD 574
Query: 183 LPTPALIKPIELWTGKQLFSVLVRPSANMRVYLNLTVLEKNYSKSGETMCPNDGFVYFRN 362
LP+PA IKP+ELWTGKQLF +L+RP + MRVY+NLTV EK+YS GETMCP+DGFVYFRN
Sbjct: 575 LPSPAFIKPVELWTGKQLFHMLLRPYSKMRVYVNLTVTEKSYSGKGETMCPSDGFVYFRN 634
Query: 363 SELVCGQLGKATLGNGNKDGLFSVLLRDYNAHAAASCMNRLAKLSARWIGNHGFSIGIDD 542
SEL+ GQLGKATLGNGNKDGL+SVLLRDY +HAAA+CMNRLAKLSARWIGNHGFSIGIDD
Sbjct: 635 SELISGQLGKATLGNGNKDGLYSVLLRDYKSHAAATCMNRLAKLSARWIGNHGFSIGIDD 694
Query: 543 VQPRGNLNREKKYSIEKGYEACDKLIQSYDKGQLKLQPGCDAAQTLEAEITGVLNGIREA 722
V P NL ++K+ I + Y+ C+ I +++G+L +QPGCDAAQTLEAE+T LN +R+
Sbjct: 695 VTPGENLVKQKQGEIHRNYKKCEDCITQFNEGKLAVQPGCDAAQTLEAEVTMSLNKVRDD 754
Query: 723 TAKVCMDELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFP 902
K+CM L WRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAP+GFIDRSLPHFP
Sbjct: 755 IGKICMKALDWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFP 814
Query: 903 RKSKTPAAKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDL 1082
KSK PAAKGFVA+SF+ GL+ATEFFFHTMGGREGLVDTAVKTADTGYMSRRL+KALEDL
Sbjct: 815 FKSKFPAAKGFVAHSFFDGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDL 874
Query: 1083 SIHYDDTVRNSSGGVIQFHYGDDGMDPAQMEGKNGVPLNLDRLYLKIKATCPSTTHANLS 1262
+++YD TVRN+S ++QF YGDDGMDP+QME K G PLN RL++K+KATCP +LS
Sbjct: 875 AVYYDSTVRNASACIVQFMYGDDGMDPSQMEEKKGRPLNFSRLFMKVKATCPPGGEKSLS 934
Query: 1263 PSEVLEIVNNRLSRHDMTPEGGCSDAFKKSLLDFFHKRIT-TMKNTRRLLQLDEEHVDKN 1439
SE+ EIVN RLS HDMTPEGGCS+AF+ SL DF K + T+KN R L L EE + +
Sbjct: 935 YSEICEIVNERLSYHDMTPEGGCSEAFRSSLSDFLIKNLAETLKNLRESLLLGEEQYEGD 994
Query: 1440 NSVFLEKVAANISGVTSQQLQVFLETCITRYHLKKXXXXXXXXXXXXXXXXEPGTQMTLK 1619
+ +LEK+A NISG+T +QLQVFL TCI+RYHLK+ EPGTQMTLK
Sbjct: 995 DRGYLEKIALNISGITKRQLQVFLNTCISRYHLKRLEAGTAIGAIGAQSIGEPGTQMTLK 1054
Query: 1620 TFHFAGVASMNITLGVPRIKEIINGAKNISTPIITATLECDNDVKSARIVKGCIEKTVLG 1799
TFHFAGVASMN+TLGVPRIKEIIN AK I+TPIIT L ++ +AR++K IEKT+LG
Sbjct: 1055 TFHFAGVASMNVTLGVPRIKEIINAAKKITTPIITTKLLSAANLTAARMIKARIEKTLLG 1114
Query: 1800 EVAKSMKIVLTSRYASIVVTLDMERIQASQLRISAHSVKQSILQHPRTKLKPQHVEILND 1979
+VAKS+KIVL SR ASI ++LDME IQ SQL I A++VKQSILQ + KLK +++LN
Sbjct: 1115 QVAKSVKIVLASRLASIAISLDMETIQVSQLCIDAYTVKQSILQTSKIKLKEHQIKVLNP 1174
Query: 1980 QKLRIHPPNADRSKLHFELHSYKAMLPKVIVKGISSVERAVINKNKGK----------YN 2129
+KL + P A++ KLHFELH K LP V+VKGI++V+RAV+NK + K Y
Sbjct: 1175 RKLEVF-PQANKDKLHFELHRLKNKLPAVVVKGITTVQRAVVNKEQQKDRKNDVKGETYE 1233
Query: 2130 LLVEGKNLRAVMGTPGVDGCKTTSNHIIEVQERLGIEAAR 2249
LLVEG L AVMG GVDG T SNHI+EVQ LGIEAAR
Sbjct: 1234 LLVEGTGLLAVMGIEGVDGRYTKSNHIMEVQNTLGIEAAR 1273
>ref|XP_004251448.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Solanum
lycopersicum]
Length = 1390
Score = 1023 bits (2646), Expect = 0.0
Identities = 519/760 (68%), Positives = 610/760 (80%), Gaps = 11/760 (1%)
Frame = +3
Query: 3 LMLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDAMDHVD 182
LMLMGVQNNLCTPK+GEILVASTQDFLTSSFLITRKDTFY+RA+FSL+CSYMGDAMD D
Sbjct: 515 LMLMGVQNNLCTPKSGEILVASTQDFLTSSFLITRKDTFYNRASFSLICSYMGDAMDPTD 574
Query: 183 LPTPALIKPIELWTGKQLFSVLVRPSANMRVYLNLTVLEKNYSKSGETMCPNDGFVYFRN 362
LP+PA IKP+ELWTGKQLF VL+RP + MRVY+NLT+ EK+YS GETMC +DGFVYFRN
Sbjct: 575 LPSPAFIKPVELWTGKQLFHVLLRPYSKMRVYVNLTLTEKSYSGKGETMCSSDGFVYFRN 634
Query: 363 SELVCGQLGKATLGNGNKDGLFSVLLRDYNAHAAASCMNRLAKLSARWIGNHGFSIGIDD 542
SEL+ GQLGKATLGNGNKDGL+SVLLRDY +HAAA+CMNRLAKLSARWIGNHGFSIGIDD
Sbjct: 635 SELISGQLGKATLGNGNKDGLYSVLLRDYESHAAATCMNRLAKLSARWIGNHGFSIGIDD 694
Query: 543 VQPRGNLNREKKYSIEKGYEACDKLIQSYDKGQLKLQPGCDAAQTLEAEITGVLNGIREA 722
V P NL ++K+ I + Y+ C+ I +++G+L +QPGCDAAQTLEAE+T LN +R+
Sbjct: 695 VTPGENLVKQKQGEIHRNYKKCEDCITQFNEGKLAVQPGCDAAQTLEAEVTMSLNKVRDD 754
Query: 723 TAKVCMDELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFP 902
K+CM L WRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAP+GFIDRSLPHFP
Sbjct: 755 IGKICMKALDWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFP 814
Query: 903 RKSKTPAAKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDL 1082
KSK PAAKGFVA+SF+ GL+ATEFFFHTMGGREGLVDTAVKTADTGYMSRRL+KALEDL
Sbjct: 815 FKSKFPAAKGFVAHSFFDGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDL 874
Query: 1083 SIHYDDTVRNSSGGVIQFHYGDDGMDPAQMEGKNGVPLNLDRLYLKIKATCPSTTHANLS 1262
+++YD TVRN+S ++QF YGDDGMDP++ME K G PLN RL++K+KATCP +LS
Sbjct: 875 AVYYDSTVRNASACIVQFMYGDDGMDPSRMEEKKGRPLNFSRLFMKVKATCPPGGEKSLS 934
Query: 1263 PSEVLEIVNNRLSRHDMTPEGGCSDAFKKSLLDFFHKRIT-TMKNTRRLLQLDEEHVDKN 1439
SE+ EIVN RLS HDMTPEGGCS+AF+ SL DF K + T+KN R L L EE + +
Sbjct: 935 YSEICEIVNERLSYHDMTPEGGCSEAFRASLSDFLIKSLAETLKNLRESLLLGEEQYEGD 994
Query: 1440 NSVFLEKVAANISGVTSQQLQVFLETCITRYHLKKXXXXXXXXXXXXXXXXEPGTQMTLK 1619
+ +LEK+ NISG+T +QLQVFL TCI+RYHLK+ EPGTQMTLK
Sbjct: 995 DRGYLEKIVLNISGITKKQLQVFLNTCISRYHLKRLEAGTAIGAIGAQSIGEPGTQMTLK 1054
Query: 1620 TFHFAGVASMNITLGVPRIKEIINGAKNISTPIITATLECDNDVKSARIVKGCIEKTVLG 1799
TFHFAGVASMN+TLGVPRIKEIIN AK I+TPIITA L ++ +AR++K IEKT+LG
Sbjct: 1055 TFHFAGVASMNVTLGVPRIKEIINAAKKITTPIITAKLLSAGNLTAARMIKARIEKTLLG 1114
Query: 1800 EVAKSMKIVLTSRYASIVVTLDMERIQASQLRISAHSVKQSILQHPRTKLKPQHVEILND 1979
+VAKS+KIVL SR ASI ++LDME IQ SQL I A++VKQSILQ + KLK +++LN
Sbjct: 1115 QVAKSVKIVLASRLASIAISLDMETIQVSQLCIDAYTVKQSILQTSKIKLKEHQIKVLNP 1174
Query: 1980 QKLRIHPPNADRSKLHFELHSYKAMLPKVIVKGISSVERAVINKNKGK----------YN 2129
+KL + P A++ KLHFELH K LP V+VKGI++V+RAV+NK + K Y
Sbjct: 1175 RKLEVF-PQANKDKLHFELHRLKNKLPAVVVKGITTVQRAVVNKEQQKDRKNDVKGETYE 1233
Query: 2130 LLVEGKNLRAVMGTPGVDGCKTTSNHIIEVQERLGIEAAR 2249
LLVEG L AVMG GVDG T SNHI+EVQ LGIEAAR
Sbjct: 1234 LLVEGTGLLAVMGIEGVDGRYTKSNHIMEVQHTLGIEAAR 1273
>ref|XP_004294640.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
[Fragaria vesca subsp. vesca]
Length = 1390
Score = 1018 bits (2632), Expect = 0.0
Identities = 518/773 (67%), Positives = 600/773 (77%), Gaps = 22/773 (2%)
Frame = +3
Query: 3 LMLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDAMDHVD 182
+MLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRA+FSLMCSYMGD +HVD
Sbjct: 515 VMLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRASFSLMCSYMGDGTEHVD 574
Query: 183 LPTPALIKPIELWTGKQLFSVLVRPSANMRVYLNLTVLEKNYS-------KSGETMCPND 341
LPTPA++KPIELWTGKQL+SVLVRP++N+RVYLNLTV EK+YS + E MCPND
Sbjct: 575 LPTPAVVKPIELWTGKQLYSVLVRPNSNVRVYLNLTVREKSYSNRKTEDGREIEAMCPND 634
Query: 342 GFVYFRNSELVCGQLGKATLGNGNKDGLFSVLLRDYNAHAAASCMNRLAKLSARWIGNHG 521
GFVYFRNSEL+ GQLGK TLGNGNKDGLFSVLLRDY AHAAASCMNR+AKLSARWIGNHG
Sbjct: 635 GFVYFRNSELLSGQLGKGTLGNGNKDGLFSVLLRDYKAHAAASCMNRVAKLSARWIGNHG 694
Query: 522 FSIGIDDVQPRGNLNREKKYSIEKGYEACDKLIQSYDKGQLKLQPGCDAAQTLEAEITGV 701
FSIGI DVQP L EK+ I+KGY+ CD I+ Y +GQL+L PGCDAAQ+LE+ IT V
Sbjct: 695 FSIGISDVQPSDILYGEKEKIIKKGYDKCDDQIKLYKEGQLRLAPGCDAAQSLESGITAV 754
Query: 702 LNGIREATAKVCMDELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFID 881
LN IR+ T K+CM LHWRNSPLIMSQCGSKGS INISQM+ACVGQQSVGGRRAPNGFID
Sbjct: 755 LNDIRDQTGKLCMQTLHWRNSPLIMSQCGSKGSAINISQMVACVGQQSVGGRRAPNGFID 814
Query: 882 RSLPHFPRKSKTPAAKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRL 1061
RSLPHFPRK TPAAKGFVA+SFY+GLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRL
Sbjct: 815 RSLPHFPRKVNTPAAKGFVASSFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRL 874
Query: 1062 IKALEDLSIHYDDTVRNSSGGVIQFHYGDDGMDPAQMEGKNGVPLNLDRLYLKIKATCPS 1241
K LEDLS+ YD TVR ++GG++QF YGDDGMDPA MEGK+G PL+ RL+ + KATCP+
Sbjct: 875 SKVLEDLSVQYDKTVRAANGGIVQFCYGDDGMDPAMMEGKSGAPLDFYRLFFRAKATCPA 934
Query: 1242 TTHANLSPSEVLEIVNNRLSRHDMTPEGGCSDAFKKSLLDFFHKRITTMKNTRRLLQLDE 1421
+LSP EV EIV +RLS DMTP+GGCS FK S+ F + + ++ T+ L++
Sbjct: 935 GESESLSPDEVSEIVRSRLSEQDMTPDGGCSMGFKSSIEQFLDEYVKALRKTQEAFLLNQ 994
Query: 1422 EHVDKNNSVFLEKVAANISGVTSQQLQVFLETCITRYHLKKXXXXXXXXXXXXXXXXEPG 1601
+ S L+ + NISGVT +QL+VFL+TCI+RYH KK EPG
Sbjct: 995 SPGWEVKSATLQNIVQNISGVTPRQLKVFLDTCISRYHSKKVDAGTAIGVIGAQSIGEPG 1054
Query: 1602 TQMTLKTFHFAGVASMNITLGVPRIKEIINGAKNISTPIITATLECDNDVKSARIVKGCI 1781
TQMTLKTFHFAGVASMN+TLGVPRIKEIINGAKNI TPIIT LECDN+ AR+V G I
Sbjct: 1055 TQMTLKTFHFAGVASMNVTLGVPRIKEIINGAKNIHTPIITTVLECDNNPMIARMVAGRI 1114
Query: 1782 EKTVLGEVAKSMKIVLTSRYASIVVTLDMERIQASQLRISAHSVKQSILQHPRTKLKPQH 1961
EKT LG+VA+ ++IV++ R A + V LDM IQ + L I A+ VKQSIL PR KLK +H
Sbjct: 1115 EKTNLGQVAECIEIVMSPRAAYVEVKLDMAVIQDAHLSIDANVVKQSILGTPRIKLKHEH 1174
Query: 1962 VEILNDQKLRIHPPNADRSKLHFELHSYKAMLPKVIVKGISSVERAVINKNK-------- 2117
+ + ++Q + +H DR KLHF L+ K++LP VIV+GI ++ER VI++ K
Sbjct: 1175 IRVPDNQTVEVHSHEKDRRKLHFHLYYLKSILPNVIVRGIKTIERVVIDEEKVKRDKKDI 1234
Query: 2118 -------GKYNLLVEGKNLRAVMGTPGVDGCKTTSNHIIEVQERLGIEAARKC 2255
KY L EGK L AVM T GVDGCKTTSN IIEVQ+ LGIEAAR C
Sbjct: 1235 DIKCGDEKKYKLFAEGKGLLAVMSTKGVDGCKTTSNDIIEVQQTLGIEAARTC 1287
>ref|XP_003574945.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
[Brachypodium distachyon]
Length = 1392
Score = 1016 bits (2627), Expect = 0.0
Identities = 513/770 (66%), Positives = 612/770 (79%), Gaps = 20/770 (2%)
Frame = +3
Query: 3 LMLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDAMDHVD 182
LMLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKD FYDR+ F+L+CSY+GDAM+++D
Sbjct: 508 LMLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDNFYDRSYFTLLCSYLGDAMENID 567
Query: 183 LPTPALIKPIELWTGKQLFSVLVRPSANMRVYLNLTVLEKNYSKSGE-----------TM 329
LPTPA+IKP+ELWTGKQLFSVLVRP+A +VYLNLTV EK Y K E TM
Sbjct: 568 LPTPAIIKPLELWTGKQLFSVLVRPNACTKVYLNLTVEEKIYMKRRERDKNAVSVLEETM 627
Query: 330 CPNDGFVYFRNSELVCGQLGKATLGNGNKDGLFSVLLRDYNAHAAASCMNRLAKLSARWI 509
CPNDG+VYFRNSEL+ GQ+GK TLGNGNKDG+FSVL+RDYN+HAAASCMNRLAK SAR+I
Sbjct: 628 CPNDGYVYFRNSELLSGQVGKKTLGNGNKDGMFSVLVRDYNSHAAASCMNRLAKFSARFI 687
Query: 510 GNHGFSIGIDDVQPRGNLNREKKYSIEKGYEACDKLIQSYDKGQ--LKLQPGCDAAQTLE 683
GNHGFSIG+DDVQP +LN++KK +I++GY C LI Y KG +L PGC+ AQTLE
Sbjct: 688 GNHGFSIGVDDVQPGESLNQKKKKTIDQGYTECHDLIAVYSKGAPGAELHPGCNRAQTLE 747
Query: 684 AEITGVLNGIREATAKVCMDELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRA 863
++ +LN +RE + CM+ LHWRNSPLIMSQCGSKGSPINISQM+ CVGQQSVGGRRA
Sbjct: 748 VRVSAILNQLREKAGEHCMNTLHWRNSPLIMSQCGSKGSPINISQMVVCVGQQSVGGRRA 807
Query: 864 PNGFIDRSLPHFPRKSKTPAAKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTADTG 1043
P+GFIDR+LPHFP SKTPAAKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTA+TG
Sbjct: 808 PDGFIDRTLPHFPIHSKTPAAKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETG 867
Query: 1044 YMSRRLIKALEDLSIHYDDTVRNSSGGVIQFHYGDDGMDPAQMEGKNGVPLNLDRLYLKI 1223
YMSRRL+K LEDLS+ YD TVRN+S G++QF YGDDGMDP +MEGK G PLNLD+L++K+
Sbjct: 868 YMSRRLMKGLEDLSVFYDQTVRNASSGIVQFVYGDDGMDPVKMEGKGGSPLNLDQLFMKV 927
Query: 1224 KATCPSTTHANLSPSEVLEIVNNRLSRHDMTPEGGCSDAFKKSLLDFFHKRITTMKNTRR 1403
KATCP H LSP +++++N++LS DM+ GGCSD FK+ L FF RI +++TRR
Sbjct: 928 KATCPQRGHDMLSPEAIMQMLNDKLSEQDMS-SGGCSDKFKELLTKFFEDRIKMLRSTRR 986
Query: 1404 LLQLDEEHVDKNNSVFLEKVAANISGVTSQQLQVFLETCITRYHLKKXXXXXXXXXXXXX 1583
L LDE+HV +S E++AANISG++++QLQVFL+TC++RYH K
Sbjct: 987 TLHLDEDHVGMKDSSIEERIAANISGISAKQLQVFLDTCLSRYHSKIIEAGASIGAIGAQ 1046
Query: 1584 XXXEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINGAKNISTPIITATLECDNDVKSAR 1763
EPGTQMTLKTFHFAGVASMN+TLGVPRIKEIIN AKNISTPIITA L D+ A
Sbjct: 1047 SIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAAKNISTPIITAELLSGQDMSFAV 1106
Query: 1764 IVKGCIEKTVLGEVAKSMKIVLTSRYASIVVTLDMERIQA-SQLRISAHSVKQSILQHPR 1940
VK +EK VLGEVA +KIVL S ++VV LDM+RI+A + IS+ SV+QSI++HP+
Sbjct: 1107 KVKRYVEKVVLGEVAAVIKIVLKSSQPNLVVKLDMQRIEAQGYMGISSDSVQQSIIRHPK 1166
Query: 1941 TKLKPQHVEILNDQKLRIHPPNADRSKLHFELHSYKAMLPKVIVKGISSVERAVIN---- 2108
KLK +HV +++ KLRI+P D+SKL ELH+ K+MLPKVIVKGI +VERAV+N
Sbjct: 1167 IKLKSEHVRVIDGAKLRIYPTGTDKSKLQLELHTLKSMLPKVIVKGIPTVERAVVNPVKR 1226
Query: 2109 --KNKGKYNLLVEGKNLRAVMGTPGVDGCKTTSNHIIEVQERLGIEAARK 2252
K +YNLLVEG NL V+GTPGVD KT SNHI+EV + LGIEAAR+
Sbjct: 1227 PDKTLDRYNLLVEGTNLLKVLGTPGVDAKKTKSNHIMEVNQTLGIEAARR 1276
>ref|XP_002531828.1| DNA-directed RNA polymerase III largest subunit, putative [Ricinus
communis] gi|223528524|gb|EEF30548.1| DNA-directed RNA
polymerase III largest subunit, putative [Ricinus
communis]
Length = 1383
Score = 1016 bits (2627), Expect = 0.0
Identities = 526/779 (67%), Positives = 614/779 (78%), Gaps = 28/779 (3%)
Frame = +3
Query: 3 LMLMGV-QNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDAMDHV 179
L+LMGV QNNLCTPKNGEILVASTQDFLTSSFLITR+DTFYDRAAFSLMCSYM D MD +
Sbjct: 491 LLLMGVSQNNLCTPKNGEILVASTQDFLTSSFLITRRDTFYDRAAFSLMCSYMNDGMDLI 550
Query: 180 DLPTPALIKPIELWTGKQLFSVLVRPSANMRVYLNLTVLEKNYSK-------SGETMCPN 338
DLPTPA++KPIELWTGKQLFSVL+RP+AN+RVY+NL V EK YSK ETMCPN
Sbjct: 551 DLPTPAILKPIELWTGKQLFSVLLRPNANVRVYVNLIVREKIYSKPKKGDKREKETMCPN 610
Query: 339 DGFVYFRNSELVCGQLGKATLGNGNKDGLFSVLLRDYNAHAAASCMNRLAKLS--ARWIG 512
DGFVY RNSEL+ GQLGKATLGNGNKDGL+S+LLRDYN HAAA+CMNRLAKL ARWIG
Sbjct: 611 DGFVYIRNSELISGQLGKATLGNGNKDGLYSILLRDYNPHAAATCMNRLAKLRQVARWIG 670
Query: 513 NHGFSIGIDDVQPRGNLNREKKYSIEKGYEACDKLIQSYDKGQLKLQPGCDAAQTLEAEI 692
NHGFSIGIDDVQP L K +I GY+ CDKLI+ Y++G+L L+PGCDA QTLE+EI
Sbjct: 671 NHGFSIGIDDVQPGKKLIDGKGKTISNGYQQCDKLIEQYNEGKLLLKPGCDATQTLESEI 730
Query: 693 TGVLNGIREATAKVCMDELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNG 872
T LN +RE VCM ELHWRNSPLIMSQCGSKGS INISQM+ACVGQQSVGGRRAP+G
Sbjct: 731 TEKLNKLREEAGDVCMKELHWRNSPLIMSQCGSKGSVINISQMVACVGQQSVGGRRAPDG 790
Query: 873 FIDRSLPHFPRKSKTPAAKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTADTGYMS 1052
FIDRSLPHFPRKSKTPAAKGFVANSFY+GL ATEFFFHTM GREGLVDTAVKTADTGYMS
Sbjct: 791 FIDRSLPHFPRKSKTPAAKGFVANSFYSGLMATEFFFHTMAGREGLVDTAVKTADTGYMS 850
Query: 1053 RRLIKALEDLSIHYDDTVRNSSGGVIQFHYGDDGMDPAQMEGKNGVPLNLDRLYLKIKAT 1232
RRLIK LEDLSI YD+TVRN+SG ++QF YGDDG+DPA MEGK GVPLNLDRL+ K+KAT
Sbjct: 851 RRLIKGLEDLSIQYDNTVRNASGCIVQFLYGDDGLDPASMEGKGGVPLNLDRLFSKVKAT 910
Query: 1233 CPSTTHANLSPSEVLEIVNNRLSRHDMTPEGGCSDAFKKSLLDFFHKRITTMKNTRRLLQ 1412
CP LSP ++ ++V N L +HDM G CS+AFKKSL F +++ +L
Sbjct: 911 CPVREEDYLSPLDISDVVENLLLKHDMALGGICSEAFKKSLTSFLGSHAKRLESMMKLAD 970
Query: 1413 LDEEHVDKN--------NSVFLEKVAANISGVTSQQLQVFLETCITRYHLKKXXXXXXXX 1568
E+ +N NS +E++A I GV+ +Q++VF++TCI RY K+
Sbjct: 971 GVEDPTSENIQTGGIRGNSKIIERLAHKIFGVSERQIEVFVKTCINRYLWKRVEPGTAIG 1030
Query: 1569 XXXXXXXXEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINGAKNISTPIITATLECDND 1748
EPGTQMTLKTFHFAGVASMNIT GVPRIKEIINGAK ISTPIITA LE + +
Sbjct: 1031 AIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKKISTPIITAELEQNTN 1090
Query: 1749 VKSARIVKGCIEKTVLGEVAKSMKIVLTSRYASIVVTLDMERIQASQLRISAHSVKQSIL 1928
V +ARI KG I+KTVLG+VAKS+KIV+TSR AS+V+TLDM+ IQ +QL + A+ VK++IL
Sbjct: 1091 VTAARIAKGRIQKTVLGQVAKSIKIVMTSRSASVVITLDMKTIQNAQLSLDANIVKEAIL 1150
Query: 1929 QHPRTKLKPQHVEILNDQKLRIHPPNADRSKLHFELHSYKAMLPKVIVKGISSVERAVI- 2105
+ PR KLKPQH+++L+ +KL + P DR ++HFELH+ K +LP +IV+GI +VERAVI
Sbjct: 1151 RTPRIKLKPQHIKVLDTRKLEV-IPLGDRERVHFELHNLKNLLPSIIVQGIKTVERAVIA 1209
Query: 2106 -NKNKGK--------YNLLVEGKNLRAVMGTPGVDGCKTTSNHIIEVQERLGIEAARKC 2255
K+ GK YN+LVEG L VMGT GVDGCKTTSNH++EVQ+ LGIEAARKC
Sbjct: 1210 QKKHDGKANDQELPTYNMLVEGMGLDLVMGTEGVDGCKTTSNHVMEVQKFLGIEAARKC 1268
>ref|XP_006488216.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
X1 [Citrus sinensis] gi|568870034|ref|XP_006488217.1|
PREDICTED: DNA-directed RNA polymerase III subunit
rpc1-like isoform X2 [Citrus sinensis]
Length = 1404
Score = 1016 bits (2626), Expect = 0.0
Identities = 523/774 (67%), Positives = 605/774 (78%), Gaps = 23/774 (2%)
Frame = +3
Query: 3 LMLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDAMDHVD 182
L+LMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMC YMGD MD VD
Sbjct: 522 LLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVD 581
Query: 183 LPTPALIKPIELWTGKQLFSVLVRPSANMRVYLNLTVLEKNYSKSG-----------ETM 329
LPTPA++KP+ELWTGKQLFSVL+RP ANMRVY+NLTV EK YS ETM
Sbjct: 582 LPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETM 641
Query: 330 CPNDGFVYFRNSELVCGQLGKATLGNGNKDGLFSVLLRDYNAHAAASCMNRLAKLSARWI 509
CPNDGFVYFRNSEL+ GQLGKATLGNGNKDGL+SVLLRDY AHA + CMNRLAKLSARWI
Sbjct: 642 CPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWI 701
Query: 510 GNHGFSIGIDDVQPRGNLNREKKYSIEKGYEACDKLIQSYDKGQLKLQPGCDAAQTLEAE 689
GNHGFSIGIDDVQP+ L+ +K I + YE C+ I+ Y++G+L+L+PGCDAAQTLEA
Sbjct: 702 GNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAV 761
Query: 690 ITGVLNGIREATAKVCMDELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPN 869
IT +LN IRE K CM L WRNSPLIMSQCGSKGSPINISQM+ACVGQQSVGGRRAPN
Sbjct: 762 ITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPN 821
Query: 870 GFIDRSLPHFPRKSKTPAAKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTADTGYM 1049
GFIDRSLPHFPRK+K PAAKGFVANSFY+GL+ATEFFFHTMGGREGLVDTAVKTADTGYM
Sbjct: 822 GFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYM 881
Query: 1050 SRRLIKALEDLSIHYDDTVRNSSGGVIQFHYGDDGMDPAQMEGKNGVPLNLDRLYLKIKA 1229
SRRLIKALEDLSI YD++VRN+ G ++QF YGDDGMDPA MEGK+G PLN DRL +K+KA
Sbjct: 882 SRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKA 941
Query: 1230 TCPSTTHANLSPSEVLEIVNNRLSRHDMTPEGGCSDAFKKSLLDFFHKRITTMKNTRRLL 1409
TCP LSP +V EIV +L+ + + CS+AF SL FF + + +
Sbjct: 942 TCPPAGQRYLSPQQVSEIVEKQLAAYG---KESCSEAFLNSLRKFFEGQ---QDKLDKKI 995
Query: 1410 QLDEEHVDKNNSVFLEKVAANISGVTSQQLQVFLETCITRYHLKKXXXXXXXXXXXXXXX 1589
+ E+ + S LE+V SG+T +QL+VF++TC +RYH+K+
Sbjct: 996 KFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYHVKRVEAGTAIGAIGAQSI 1055
Query: 1590 XEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINGAKNISTPIITATLECDNDVKSARIV 1769
EPGTQMTLKTFHFAGVASMNIT GVPRIKEIINGAK ISTPIITA LEC+++ +AR+V
Sbjct: 1056 GEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVV 1115
Query: 1770 KGCIEKTVLGEVAKSMKIVLTSRYASIVVTLDMERIQASQLRISAHSVKQSILQHPRTKL 1949
KG IEKT+LG+VAKS+KIV+TSR ASIV+ LDME IQ + L I+A VK+SI+Q P+ KL
Sbjct: 1116 KGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKL 1175
Query: 1950 KPQHVEILNDQKLRIHPPNADRSKLHFELHSYKAMLPKVIVKGISSVERAVI-------- 2105
K QH+++L+ +KL I PP D+SK+HFEL+S K +LP VIVKGI +VER VI
Sbjct: 1176 KQQHIKVLDFRKLEIFPP-VDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKR 1234
Query: 2106 ----NKNKGKYNLLVEGKNLRAVMGTPGVDGCKTTSNHIIEVQERLGIEAARKC 2255
N K KY LLVEG L+AVMG G+DGCKT SNHI EVQ+ LGIEAAR C
Sbjct: 1235 KVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARIC 1288
>ref|XP_007036220.1| DNA-directed RNA polymerase [Theobroma cacao]
gi|508773465|gb|EOY20721.1| DNA-directed RNA polymerase
[Theobroma cacao]
Length = 1395
Score = 1014 bits (2622), Expect = 0.0
Identities = 526/774 (67%), Positives = 612/774 (79%), Gaps = 23/774 (2%)
Frame = +3
Query: 3 LMLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDAMDHVD 182
LMLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKD FYDRAAFSL+CSYMGD MD +D
Sbjct: 515 LMLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDIFYDRAAFSLICSYMGDGMDLID 574
Query: 183 LPTPALIKPIELWTGKQLFSVLVRPSANMRVYLNLTVLEKNYSKS-----------GETM 329
LPTPAL+KPIELWTGKQLFSVL+RP A++RVYLNL V E+NYSK ETM
Sbjct: 575 LPTPALLKPIELWTGKQLFSVLLRPHASVRVYLNLIVKERNYSKKIIKRIGNKEIEVETM 634
Query: 330 CPNDGFVYFRNSELVCGQLGKATLGNGNKDGLFSVLLRDYNAHAAASCMNRLAKLSARWI 509
CP+DGFVY RNSEL+CGQLGKATLGNGNKDGL+SVLLRDYNAHAAA+CMNRLAKLSARWI
Sbjct: 635 CPDDGFVYIRNSELICGQLGKATLGNGNKDGLYSVLLRDYNAHAAAACMNRLAKLSARWI 694
Query: 510 GNHGFSIGIDDVQPRGNLNREKKYSIEKGYEACDKLIQSYDKGQLKLQPGCDAAQTLEAE 689
GNHGFSIGIDDVQP LN EK +I Y+ CD+ IQ++++G+LK +PG DAAQTLEA
Sbjct: 695 GNHGFSIGIDDVQPGKRLNDEKALTISGDYKKCDEEIQTFNEGKLKPKPGYDAAQTLEAN 754
Query: 690 ITGVLNGIREATAKVCMDELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPN 869
+T +LN IR+ T KVCM ELHWRNSPLIMSQCGSKGS INISQMIACVGQQSVGGRRAPN
Sbjct: 755 VTAILNNIRDKTGKVCMKELHWRNSPLIMSQCGSKGSAINISQMIACVGQQSVGGRRAPN 814
Query: 870 GFIDRSLPHFPRKSKTPAAKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTADTGYM 1049
GFIDRSLPHF R SKTPAAKGFVANSFY+GLTATEFFFHTM GREGLVDTAVKTA+TGYM
Sbjct: 815 GFIDRSLPHFHRGSKTPAAKGFVANSFYSGLTATEFFFHTMAGREGLVDTAVKTAETGYM 874
Query: 1050 SRRLIKALEDLSIHYDDTVRNSSGGVIQFHYGDDGMDPAQMEGKNGVPLNLDRLYLKIKA 1229
SRRLIKALEDLSIHYD+TVRN+SG ++QF YGDDGMDPA MEGK+G PLN DRL +K+KA
Sbjct: 875 SRRLIKALEDLSIHYDNTVRNASGCIVQFIYGDDGMDPACMEGKSGFPLNFDRLLMKVKA 934
Query: 1230 TCPSTTHANLSPSEVLEIVNNRLSRHDMTPEGGCSDAFKKSLLDFFHKRITTMKNTRRLL 1409
TCP L +++++ +L++HD P G CS+AFKKSL F + + +L+
Sbjct: 935 TCPPIEQKCLHVGSIMQMLEEQLAKHD--PAGVCSEAFKKSLKGFLKSQTNELDRVMKLV 992
Query: 1410 QLDEEHVDKNNSVFLEKVAANISGVTSQQLQVFLETCITRYHLKKXXXXXXXXXXXXXXX 1589
+ S LEKV ISG++ +QL+VF+ TCI+RY K
Sbjct: 993 NNCAQ-----KSEILEKVGHKISGISDRQLEVFVSTCISRYRSKVIEAGTAIGAIGAQSI 1047
Query: 1590 XEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINGAKNISTPIITATLECDNDVKSARIV 1769
EPGTQMTLKTFHFAGVASMNIT GVPRIKEIIN AK ISTP+ITA LE D++ A+IV
Sbjct: 1048 GEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINAAKRISTPVITAELEFDDNPNIAQIV 1107
Query: 1770 KGCIEKTVLGEVAKSMKIVLTSRYASIVVTLDMERIQASQLRISAHSVKQSILQHPRTKL 1949
KG IEKTVLG+VAKS+KIV+TSR AS+V+TLDME I ++L I A+ VK+SILQ P+ KL
Sbjct: 1108 KGRIEKTVLGQVAKSIKIVITSRSASVVITLDMEIILDAELYIDANIVKESILQTPKIKL 1167
Query: 1950 KPQHVEILNDQKLRIHPPNADRSKLHFELHSYKAMLPKVIVKGISSVERAVI-NKNKGKY 2126
K QHV++L+ +KL + PP ADRS++HFELHS K +LP V+VKGI +VER V+ +KNK K
Sbjct: 1168 KEQHVKVLDGRKLEVVPP-ADRSQIHFELHSLKNLLPLVVVKGIKTVERTVVYDKNKEKK 1226
Query: 2127 N-----------LLVEGKNLRAVMGTPGVDGCKTTSNHIIEVQERLGIEAARKC 2255
N LLVEG L+AVMG G+DG +T SNH++E+++ LGIEAARKC
Sbjct: 1227 NQKEEETTKHFQLLVEGTGLQAVMGIEGIDGRRTWSNHVMEMEQILGIEAARKC 1280
>ref|XP_002985715.1| hypothetical protein SELMODRAFT_446351 [Selaginella moellendorffii]
gi|300146624|gb|EFJ13293.1| hypothetical protein
SELMODRAFT_446351 [Selaginella moellendorffii]
Length = 1393
Score = 1011 bits (2615), Expect = 0.0
Identities = 517/752 (68%), Positives = 595/752 (79%), Gaps = 3/752 (0%)
Frame = +3
Query: 3 LMLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDAMDHVD 182
L LMGVQNNLCTPKNGEILVASTQDFLTSSFLITR+DTFYDR F+LMCSYMGDA++H+D
Sbjct: 532 LTLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRRDTFYDRGQFALMCSYMGDAVEHID 591
Query: 183 LPTPALIKPIELWTGKQLFSVLVRPSANMRVYLNLTVLEKNYSKSGETMCPNDGFVYFRN 362
LPTPA++KP+ELWTGKQLF VL+RPSA ++V+LN V EKN+ K ETMCP DG+V+F+N
Sbjct: 592 LPTPAILKPVELWTGKQLFGVLIRPSARIKVFLNFVVCEKNHKKGTETMCPKDGYVFFKN 651
Query: 363 SELVCGQLGKATLGNGNKDGLFSVLLRDYNAHAAASCMNRLAKLSARWIGNHGFSIGIDD 542
SEL+CGQLGK TLGNG+KDGLF+VLLRDY AAASCMNRLAKLSARWIGNHGFSIGIDD
Sbjct: 652 SELICGQLGKGTLGNGSKDGLFTVLLRDYGEQAAASCMNRLAKLSARWIGNHGFSIGIDD 711
Query: 543 VQPRGNLNREKKYSIEKGYEACDKLIQSYDKGQLKLQPGCDAAQTLEAEITGVLNGIREA 722
VQP L EK+ I +GY ACDK I ++KGQL LQPGCDAAQTLE+EITG LN IREA
Sbjct: 712 VQPGSRLTVEKEKRIAEGYRACDKHISLFNKGQLTLQPGCDAAQTLESEITGELNKIREA 771
Query: 723 TAKVCMDELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFP 902
+VC++ELHWRNSPLIMSQCGSKGS INISQMIACVGQQSV G RAPNGFI+RSLPHFP
Sbjct: 772 AGQVCVNELHWRNSPLIMSQCGSKGSVINISQMIACVGQQSVSGHRAPNGFIERSLPHFP 831
Query: 903 RKSKTPAAKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDL 1082
R KTP AKGFVANSFY+GLTATEF FHTMGGREGLVDTAVKTA+TGYMSRRL+KALEDL
Sbjct: 832 RNDKTPQAKGFVANSFYSGLTATEFIFHTMGGREGLVDTAVKTAETGYMSRRLMKALEDL 891
Query: 1083 SIHYDDTVRNSSGGVIQFHYGDDGMDPAQMEGKNGVPLNLDRLYLKIKATCPSTTHANLS 1262
S YD TVRNSSG ++Q YGDD MDP MEG+NG PLNLDR+ +K KATCP T L
Sbjct: 892 SCQYDGTVRNSSGVIVQLIYGDDSMDPVSMEGQNGTPLNLDRVLMKAKATCPRGTTPALP 951
Query: 1263 PSEVLEIVNNRLSRHDMTPEGGCSDAFKKSLLDFFHKRITTMKNTRRLLQLDEEHVDKNN 1442
PSE+ +IV ++ S+ CS AF SL F K T+ +TR+ L L +D
Sbjct: 952 PSELWKIVESKFSQDG----SECSTAFLDSLRKFLRKEFDTISSTRKRLSLP---LDDFG 1004
Query: 1443 SVFLEKVAANISGVTSQQLQVFLETCITRYHLKKXXXXXXXXXXXXXXXXEPGTQMTLKT 1622
+V E VAAN+SG+TS+QL+VFL TCI RYH KK EPGTQMTLKT
Sbjct: 1005 NVDDENVAANVSGLTSRQLEVFLNTCIGRYHRKKLDPGTAVGAIGAQSIGEPGTQMTLKT 1064
Query: 1623 FHFAGVASMNITLGVPRIKEIINGAKNISTPIITATLECDNDVKSARIVKGCIEKTVLGE 1802
FHFAGVASMNITLGVPRIKEIIN +K ISTPIITA L +NDVK+ARIVKG IEKT LG+
Sbjct: 1065 FHFAGVASMNITLGVPRIKEIINASKKISTPIITAKLVSENDVKAARIVKGRIEKTALGD 1124
Query: 1803 VAKSMKIVLTSRYASIVVTLDMERIQASQLRISAHSVKQSILQHPR---TKLKPQHVEIL 1973
VAKS+KIVL A + + LDM+RI + QL I A +V +++L+ P+ KLK QHV++
Sbjct: 1125 VAKSIKIVLRPGQAFVSIKLDMDRIYSLQLDIRAETVAEAVLKFPKIKSMKLKEQHVKVN 1184
Query: 1974 NDQKLRIHPPNADRSKLHFELHSYKAMLPKVIVKGISSVERAVINKNKGKYNLLVEGKNL 2153
+D+ + + P +DR K+ F LHS + MLPKVIVKGI +VERAVIN+ KGKYNLLVEG NL
Sbjct: 1185 DDRSISLTTPESDRKKMLFALHSLQNMLPKVIVKGIPTVERAVINQEKGKYNLLVEGTNL 1244
Query: 2154 RAVMGTPGVDGCKTTSNHIIEVQERLGIEAAR 2249
+AVMGT GVDG +TTSNHI E E LGIEAAR
Sbjct: 1245 KAVMGTEGVDGRETTSNHIFETVEVLGIEAAR 1276
>ref|XP_002300065.1| DNA-directed RNA polymerase family protein [Populus trichocarpa]
gi|222847323|gb|EEE84870.1| DNA-directed RNA polymerase
family protein [Populus trichocarpa]
Length = 1394
Score = 1000 bits (2585), Expect = 0.0
Identities = 516/776 (66%), Positives = 607/776 (78%), Gaps = 26/776 (3%)
Frame = +3
Query: 6 MLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDAMDHVDL 185
+LMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYM D MD VDL
Sbjct: 521 LLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMNDGMDLVDL 580
Query: 186 PTPALIKPIELWTGKQLFSVLVRPSANMRVYLNLTVLEKNYS-------KSGETMCPNDG 344
PTP+++KPIELWTGKQLFSVL+RP AN+RVY+NL + EKNYS K ETMCPNDG
Sbjct: 581 PTPSVLKPIELWTGKQLFSVLLRPHANVRVYVNLILKEKNYSRPNKEHKKERETMCPNDG 640
Query: 345 FVYFRNSELVCGQLGKATLGNGNKDGLFSVLLRDYNAHAAASCMNRLAKLSARWIGNHGF 524
+VYFRNSEL+ GQLGKATLGNGNKDGL+S+LLRDYNA+AAA+CMNRLAKLSARWIGNHGF
Sbjct: 641 YVYFRNSELISGQLGKATLGNGNKDGLYSILLRDYNAYAAATCMNRLAKLSARWIGNHGF 700
Query: 525 SIGIDDVQPRGNLNREKKYSIEKGYEACDKLIQSYDKGQLKLQPGCDAAQTLEAEITGVL 704
SIGIDDVQP L EK +I GY C+KLI Y+ G+L L+ GCDA QTLE EIT L
Sbjct: 701 SIGIDDVQPGKKLIDEKGKTISNGYRHCNKLIADYNGGRLALKSGCDATQTLETEITERL 760
Query: 705 NGIREATAKVCMDELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDR 884
N +RE VCM ELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGG RAP+GFIDR
Sbjct: 761 NKLREEAGDVCMKELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGSRAPDGFIDR 820
Query: 885 SLPHFPRKSKTPAAKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLI 1064
SLPHFPRKSKTPAAKGFVANSFY+GL+ATEFFFHTMGGREGLVDTAVKTADTGYM+RRL
Sbjct: 821 SLPHFPRKSKTPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMARRLS 880
Query: 1065 KALEDLSIHYDDTVRNSSGGVIQFHYGDDGMDPAQMEGKNGVPLNLDRLYLKIKATCPST 1244
K LEDL + YD+TV+++ GG++QF YGDDG+DPA MEGK GVPLN DRL++K+KATC +
Sbjct: 881 KGLEDLCVQYDNTVQDAGGGIVQFLYGDDGLDPAIMEGKAGVPLNFDRLFMKVKATCGAE 940
Query: 1245 THANLSPSEVLEIVNNRLSRHDMTPEGGCSDAFKKSLLDFFHKRITTMKNTRRLLQ-LDE 1421
LSPS++ IV + L +H+ T +G CS++F+KSL F + ++ +L+ ++
Sbjct: 941 EDEYLSPSDISNIVQSLLLKHNGTLDGICSESFRKSLSSFLGDQAKRLECLMKLVDGVEV 1000
Query: 1422 EHVDKNNSV--------FLEKVAANISGVTSQQLQVFLETCITRYHLKKXXXXXXXXXXX 1577
E+ + +V EK+A +SG+T +QL+VFL+TC+ RY K+
Sbjct: 1001 ENFENIKNVEGLTGISKNTEKIAQKVSGITEKQLEVFLKTCLDRYVWKRIEPGTAIGAIG 1060
Query: 1578 XXXXXEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINGAKNISTPIITATLECDNDVKS 1757
EPGTQMTLKTFHFAGVASMNIT GVPRIKEIINGAK ISTPIIT LE +++V +
Sbjct: 1061 AQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITVELEHNSNVNA 1120
Query: 1758 ARIVKGCIEKTVLGEVAKSMKIVLTSRYASIVVTLDMERIQASQLRISAHSVKQSILQHP 1937
ARI+KG I+KTVLG+VAKS+KIV+TSR AS+ VTLDM+ I+ +QL + A+ V++ IL+ P
Sbjct: 1121 ARIIKGRIQKTVLGQVAKSIKIVMTSRSASVKVTLDMKTIREAQLSLDANIVRELILETP 1180
Query: 1938 RTKLKPQHVEILNDQKLRIHPPNADRSKLHFELHSYKAMLPKVIVKGISSVERAVINKNK 2117
+ K K Q + +L D KL + P DR+KLHFELHS K MLP V+VKGI +VER VI + K
Sbjct: 1181 KIKRKLQRINVLEDGKLEVF-PGGDRNKLHFELHSLKNMLPAVVVKGIKTVERVVIAQKK 1239
Query: 2118 ----------GKYNLLVEGKNLRAVMGTPGVDGCKTTSNHIIEVQERLGIEAARKC 2255
KYN+ VEG L+AVMGT GVDG KT SNHIIEVQE LGIEAARKC
Sbjct: 1240 LDDAENDQGGPKYNMFVEGMGLQAVMGTEGVDGRKTKSNHIIEVQETLGIEAARKC 1295
>ref|XP_002974416.1| hypothetical protein SELMODRAFT_442419 [Selaginella moellendorffii]
gi|300158014|gb|EFJ24638.1| hypothetical protein
SELMODRAFT_442419 [Selaginella moellendorffii]
Length = 1348
Score = 999 bits (2584), Expect = 0.0
Identities = 514/756 (67%), Positives = 591/756 (78%), Gaps = 7/756 (0%)
Frame = +3
Query: 3 LMLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDAMDHVD 182
L LMGVQNNLCTPKNGEILVASTQDFLTSSFLITR+DTFYDR F+LMCSYMGDA++H+D
Sbjct: 532 LTLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRRDTFYDRGQFALMCSYMGDAVEHID 591
Query: 183 LPTPALIKPIELWTGKQLFSVLVRPSANMRVYLNLTVLEKNYSKSGETMCPNDGFVYFRN 362
LPTPA++KP+ELWTGKQLF VL+RPSA ++V+LN V EKN+ K ETMCP DG+V+F+N
Sbjct: 592 LPTPAILKPVELWTGKQLFGVLIRPSARIKVFLNFVVCEKNHKKGTETMCPKDGYVFFKN 651
Query: 363 SELVCGQLGKATLGNGNKDGLFSVLLRDYNAHAAASCMNRLAKLS----ARWIGNHGFSI 530
SEL+CGQLGK TLGNG+KDGLF+VLLRDY AAASCMNRLAKL ARWIGNHGFSI
Sbjct: 652 SELICGQLGKGTLGNGSKDGLFTVLLRDYGEQAAASCMNRLAKLRHSYFARWIGNHGFSI 711
Query: 531 GIDDVQPRGNLNREKKYSIEKGYEACDKLIQSYDKGQLKLQPGCDAAQTLEAEITGVLNG 710
GIDDVQP L EK+ I +GY ACDK I ++KGQL LQPGCDAAQTLE+EITG LN
Sbjct: 712 GIDDVQPGSRLTVEKEKRIAEGYRACDKHISLFNKGQLTLQPGCDAAQTLESEITGELNK 771
Query: 711 IREATAKVCMDELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSL 890
IREA +VC++ELHWRNSPLIMSQCGSKGS INISQMIACVGQQSV G RAPNGFI+RSL
Sbjct: 772 IREAAGQVCVNELHWRNSPLIMSQCGSKGSVINISQMIACVGQQSVSGHRAPNGFIERSL 831
Query: 891 PHFPRKSKTPAAKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKA 1070
PHFPR KTP AKGFVANSFY+GLTATEF FHTMGGREGLVDTAVKTA+TGYMSRRL+KA
Sbjct: 832 PHFPRNDKTPQAKGFVANSFYSGLTATEFIFHTMGGREGLVDTAVKTAETGYMSRRLMKA 891
Query: 1071 LEDLSIHYDDTVRNSSGGVIQFHYGDDGMDPAQMEGKNGVPLNLDRLYLKIKATCPSTTH 1250
LEDLS YD TVRNSSG ++Q YGDD MDP MEG+NG PLNLDR+ +K KATCP
Sbjct: 892 LEDLSCQYDGTVRNSSGVIVQLIYGDDSMDPVSMEGQNGTPLNLDRVLMKAKATCPRGAT 951
Query: 1251 ANLSPSEVLEIVNNRLSRHDMTPEGGCSDAFKKSLLDFFHKRITTMKNTRRLLQLDEEHV 1430
L PSE+ +IV ++ S+ CS AF SL F K T+ +TR+ L L E
Sbjct: 952 PALPPSELWKIVESKFSQDG----SECSMAFLDSLRKFLRKEFDTISSTRKRLSLPLEDF 1007
Query: 1431 DKNNSVFLEKVAANISGVTSQQLQVFLETCITRYHLKKXXXXXXXXXXXXXXXXEPGTQM 1610
+ E VAAN+SG+TS+QL+VFL TCI RYH KK EPGTQM
Sbjct: 1008 GNLDD---ENVAANVSGLTSRQLEVFLNTCIGRYHRKKLDPGTAVGAIGAQSIGEPGTQM 1064
Query: 1611 TLKTFHFAGVASMNITLGVPRIKEIINGAKNISTPIITATLECDNDVKSARIVKGCIEKT 1790
TLKTFHFAGVASMNITLGVPRIKEIIN +K ISTPIITA L +NDVK+ARIVKG IEKT
Sbjct: 1065 TLKTFHFAGVASMNITLGVPRIKEIINASKKISTPIITAKLVSENDVKAARIVKGRIEKT 1124
Query: 1791 VLGEVAKSMKIVLTSRYASIVVTLDMERIQASQLRISAHSVKQSILQHPR---TKLKPQH 1961
LG+VAKS+KIVL A + + LDM+RI + QL I A +V +++L+ P+ KLK QH
Sbjct: 1125 ALGDVAKSIKIVLRPGQAFVSIKLDMDRIYSLQLDIRAETVAEAVLKFPKIKSMKLKEQH 1184
Query: 1962 VEILNDQKLRIHPPNADRSKLHFELHSYKAMLPKVIVKGISSVERAVINKNKGKYNLLVE 2141
V++ +D+ + + P +DR K+ F LHS + MLPKVIVKGI +VERAVIN+ KGKYNLLVE
Sbjct: 1185 VKVNDDRSISLTTPESDRKKMLFALHSLQNMLPKVIVKGIPTVERAVINQEKGKYNLLVE 1244
Query: 2142 GKNLRAVMGTPGVDGCKTTSNHIIEVQERLGIEAAR 2249
G NL+AVMGT GVDG +TTSNHI E E LGIEAAR
Sbjct: 1245 GTNLKAVMGTEGVDGRETTSNHIFETVEVLGIEAAR 1280
>ref|XP_003539102.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Glycine
max]
Length = 1391
Score = 991 bits (2561), Expect = 0.0
Identities = 504/769 (65%), Positives = 603/769 (78%), Gaps = 19/769 (2%)
Frame = +3
Query: 3 LMLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDAMDHVD 182
++LMGV+NNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDR+ FSL+CSY+GD MD +D
Sbjct: 517 ILLMGVENNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRSTFSLICSYIGDGMDPID 576
Query: 183 LPTPALIKPIELWTGKQLFSVLVRPSANMRVYLNLTVLEKNYSKSGE---------TMCP 335
LPTPA++KP+ELW+GKQLFS+++RP ANMRVY+NLTV E+NY++ + T+CP
Sbjct: 577 LPTPAIVKPVELWSGKQLFSIILRPHANMRVYVNLTVKERNYTEDKKIKDKKIEWKTLCP 636
Query: 336 NDGFVYFRNSELVCGQLGKATLGNGNKDGLFSVLLRDYNAHAAASCMNRLAKLSARWIGN 515
NDGFVYFRNSEL+ GQ+GK TLGNGNKDGLFSVLLRDY AHAAASCMNRLAKLSARWIGN
Sbjct: 637 NDGFVYFRNSELISGQVGKVTLGNGNKDGLFSVLLRDYRAHAAASCMNRLAKLSARWIGN 696
Query: 516 HGFSIGIDDVQPRGNLNREKKYSIEKGYEACDKLIQSYDKGQLKLQPGCDAAQTLEAEIT 695
HGFSIGIDDVQP+ L +K +I +GY CDK I++++KG+L+L GCDAAQTLE IT
Sbjct: 697 HGFSIGIDDVQPKEILINKKDETISEGYRECDKHIEAFNKGKLELLAGCDAAQTLETRIT 756
Query: 696 GVLNGIREATAKVCMDELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGF 875
GVLNG+R+ KVCM LHWRNSPLIMSQCGSKGS INISQM+ACVGQQSVGGRR PNGF
Sbjct: 757 GVLNGLRDTAGKVCMQTLHWRNSPLIMSQCGSKGSSINISQMVACVGQQSVGGRRTPNGF 816
Query: 876 IDRSLPHFPRKSKTPAAKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTADTGYMSR 1055
IDRSLPHFPRKSKTPAAKGFVANSFY+GL+ATEFFFHTMGGREGLVDTAVKTADTGYMSR
Sbjct: 817 IDRSLPHFPRKSKTPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSR 876
Query: 1056 RLIKALEDLSIHYDDTVRNSSGGVIQFHYGDDGMDPAQMEGKNGVPLNLDRLYLKIKATC 1235
+L+K+LEDL +HYD TVRN+ G ++QF YGDDGMDPA MEGKNG PLN +RL+LK KA C
Sbjct: 877 QLMKSLEDLFLHYDYTVRNAGGSIVQFCYGDDGMDPAGMEGKNGKPLNFERLFLKSKAIC 936
Query: 1236 PSTTHAN-LSPSEVLEIVNNRLSRHDMTP-------EGGCSDAFKKSLLDFFHKRITTMK 1391
P+ LS S+V ++V+ +LS DM+ E G S F +SL F
Sbjct: 937 PNDEDDEILSSSDVSKVVHEKLSEFDMSRLAEKGVFEVGFSADFVESLQSFIKDN----- 991
Query: 1392 NTRRLLQLDEEHVDKNNSVFLEKVAANISGVTSQQLQVFLETCITRYHLKKXXXXXXXXX 1571
+L EE +S L+K ISG+T +QL VFL C++RYH KK
Sbjct: 992 -----AKLTEEGFTDEHSQNLKKFGQRISGITRKQLDVFLNICLSRYHSKKMEAGAPVGA 1046
Query: 1572 XXXXXXXEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINGAKNISTPIITATLECDNDV 1751
EPGTQMTLKTFHFAGVASMN+TLGVPR+KEI+NG K ISTPIITA LE D++
Sbjct: 1047 TGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRVKEIMNGNKKISTPIITAILERDDNA 1106
Query: 1752 KSARIVKGCIEKTVLGEVAKSMKIVLTSRYASIVVTLDMERIQASQLRISAHSVKQSILQ 1931
+ARIVKG IEKT LG+VAKS+K+V+TSR AS+V+TLDM+RIQ + L I A+ VK+SIL+
Sbjct: 1107 NTARIVKGRIEKTNLGQVAKSIKVVMTSRSASVVITLDMKRIQDAHLNIDANIVKESILR 1166
Query: 1932 HPRTKLKPQHVEILNDQKLRIHPPNADRSKLHFELHSYKAMLPKVIVKGISSVERAVINK 2111
+TKLKP+H++IL+ +KL + P + DRSK+HF+LH K +LP V+VKGI +V+R VI+K
Sbjct: 1167 TKKTKLKPEHIKILDIKKLEVVPQDVDRSKIHFQLHYLKNLLPTVVVKGIKTVDRVVISK 1226
Query: 2112 N--KGKYNLLVEGKNLRAVMGTPGVDGCKTTSNHIIEVQERLGIEAARK 2252
+ K+ LLVEG R VMG G+DG KT SNHI EV++ LGIEAAR+
Sbjct: 1227 DTKAEKFRLLVEGTGFREVMGVEGIDGRKTVSNHIHEVRDTLGIEAARE 1275
>ref|XP_001757221.1| predicted protein [Physcomitrella patens] gi|162691719|gb|EDQ78080.1|
predicted protein [Physcomitrella patens]
Length = 1397
Score = 989 bits (2556), Expect = 0.0
Identities = 512/756 (67%), Positives = 586/756 (77%), Gaps = 7/756 (0%)
Frame = +3
Query: 3 LMLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDAMDHVD 182
LMLMGV NNLCTPKNGEILVASTQDFLTSS+L TRKDTFYDRA F+ C YMGDA +++D
Sbjct: 527 LMLMGVANNLCTPKNGEILVASTQDFLTSSYLFTRKDTFYDRATFTQACVYMGDAAENID 586
Query: 183 LPTPALIKPIELWTGKQLFSVLVRPSANMRVYLNLTVLEKNYSKSGE--TMCPNDGFVYF 356
LPTP++IKP+ELWTGKQLFSVLVRP+A RV++NL EKNY K +MCP DG+VYF
Sbjct: 587 LPTPSIIKPMELWTGKQLFSVLVRPNAKTRVFVNLVSYEKNYDKKANKGSMCPTDGYVYF 646
Query: 357 RNSELVCGQLGKATLGNGNKDGLFSVLLRDYNAHAAASCMNRLAKLSARWIGNHGFSIGI 536
RNSEL+CGQLGKATLGNGNKDGLF+VLLRDY AAA CMNRLAKLSARWIGNHGFSIGI
Sbjct: 647 RNSELICGQLGKATLGNGNKDGLFTVLLRDYGNEAAAVCMNRLAKLSARWIGNHGFSIGI 706
Query: 537 DDVQPRGNLNREKKYSIEKGYEACDKLIQSYDKGQLKLQPGCDAAQTLEAEITGVLNGIR 716
DDV P LNREK+ I KGY ACD+ IQ Y KG+L+LQPGC+AAQTLE+ +TG LN IR
Sbjct: 707 DDVAPSDRLNREKEKQITKGYNACDQHIQLYKKGKLELQPGCNAAQTLESAVTGELNKIR 766
Query: 717 EATAKVCMDELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPH 896
EA VC DELHWRNSPLIMS+CGSKGS INISQM+ACVGQQSVGG+RAPNGFIDR+LPH
Sbjct: 767 EAAGNVCKDELHWRNSPLIMSECGSKGSFINISQMVACVGQQSVGGKRAPNGFIDRTLPH 826
Query: 897 FPRKSKTPAAKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALE 1076
FPR +TP KGFVANSFY+GL+ATEFFFHTMGGREGLVDTAVKTA+TGYMSRRL+KALE
Sbjct: 827 FPRHDRTPQGKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKALE 886
Query: 1077 DLSIHYDDTVRNSSGGVIQFHYGDDGMDPAQMEGKNGVPLNLDRLYLKIKATCPSTTHAN 1256
DLS YD TVRNSSGG++Q YGDDGMDP MEGK+G P NLDR+ +K KATCPS
Sbjct: 887 DLSAQYDGTVRNSSGGIVQLLYGDDGMDPVYMEGKDGAPFNLDRMLMKTKATCPSYGQLG 946
Query: 1257 LSPSEVLEIVNNRLSRHDMTPEGGCSDAFKKSLLDFFHKRITTMKNTRRLLQLDEEHVDK 1436
L P+E+ ++ N RL++ DMT E AFK SL F I +TR L L +
Sbjct: 947 LPPTEIEKLFNERLTKPDMTSE--TVGAFKTSLKKFMDSCIKDNISTRTKLGLPLDCNGG 1004
Query: 1437 NNSVFLEKVAANISGVTSQQ-----LQVFLETCITRYHLKKXXXXXXXXXXXXXXXXEPG 1601
+ LE A ISG+TS+Q LQVFL+TCI RYH+K+ EPG
Sbjct: 1005 PDQTLLESTATYISGLTSRQLEICLLQVFLDTCIKRYHMKRVEPGAAVGAVGAQSIGEPG 1064
Query: 1602 TQMTLKTFHFAGVASMNITLGVPRIKEIINGAKNISTPIITATLECDNDVKSARIVKGCI 1781
TQMTLKTFHFAGVASMNITLGVPRIKEIIN +KNISTPIITA L ND K+ARIVKG I
Sbjct: 1065 TQMTLKTFHFAGVASMNITLGVPRIKEIINASKNISTPIITAVLVSGNDEKAARIVKGRI 1124
Query: 1782 EKTVLGEVAKSMKIVLTSRYASIVVTLDMERIQASQLRISAHSVKQSILQHPRTKLKPQH 1961
EKT LGEVAKS+K VL + A I V LDM+RI A QL I++ +V +I+Q P+ KLK +
Sbjct: 1125 EKTTLGEVAKSIKTVLRASQAIISVKLDMKRIDALQLDINSDTVALAIVQTPKIKLKHVN 1184
Query: 1962 VEILNDQKLRIHPPNADRSKLHFELHSYKAMLPKVIVKGISSVERAVINKNKGKYNLLVE 2141
+ I++ KL + PP+ D+ KL+F LHS MLPKVIVKGI SVERAVINK KG YNLLVE
Sbjct: 1185 IRIVDRDKLIVIPPDQDKGKLYFYLHSLCNMLPKVIVKGIPSVERAVINKEKGVYNLLVE 1244
Query: 2142 GKNLRAVMGTPGVDGCKTTSNHIIEVQERLGIEAAR 2249
G NL+AVMG GV+G T SNH+IE ++ LGIEAAR
Sbjct: 1245 GTNLKAVMGISGVNGKLTKSNHVIEAEQTLGIEAAR 1280