BLASTX nr result
ID: Akebia22_contig00003256
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Akebia22_contig00003256
(1885 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EXB70625.1| RNA polymerase sigma factor rpoD [Morus notabilis] 590 e-166
emb|CBI40014.3| unnamed protein product [Vitis vinifera] 590 e-165
ref|XP_002273602.1| PREDICTED: RNA polymerase sigma factor rpoD-... 589 e-165
ref|XP_007029868.1| RNApolymerase sigma subunit 2 [Theobroma cac... 582 e-163
ref|XP_006484754.1| PREDICTED: RNA polymerase sigma factor sigB-... 577 e-162
ref|XP_006437338.1| hypothetical protein CICLE_v10030998mg [Citr... 574 e-161
ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative ... 560 e-157
ref|XP_004303327.1| PREDICTED: RNA polymerase sigma factor sigB-... 555 e-155
ref|XP_004145011.1| PREDICTED: RNA polymerase sigma factor sigB-... 550 e-153
gb|EYU27177.1| hypothetical protein MIMGU_mgv1a003367mg [Mimulus... 546 e-153
ref|XP_002319746.2| SIGMA FACTOR B family protein [Populus trich... 542 e-151
ref|XP_006307126.1| hypothetical protein CARUB_v10008711mg [Caps... 542 e-151
ref|XP_006484755.1| PREDICTED: RNA polymerase sigma factor sigB-... 540 e-151
emb|CAD20831.2| sigma factor [Spinacia oleracea] 532 e-148
ref|XP_006577887.1| PREDICTED: RNA polymerase sigma factor sigB-... 528 e-147
ref|XP_007203880.1| hypothetical protein PRUPE_ppa006657mg [Prun... 526 e-146
ref|XP_002889701.1| hypothetical protein ARALYDRAFT_470915 [Arab... 523 e-146
ref|NP_172330.1| RNA polymerase sigma subunit 2 [Arabidopsis tha... 523 e-145
ref|XP_004229543.1| PREDICTED: RNA polymerase sigma factor sigB-... 520 e-145
dbj|BAC43527.1| putative plastid RNA polymerase sigma-subunit SI... 520 e-145
>gb|EXB70625.1| RNA polymerase sigma factor rpoD [Morus notabilis]
Length = 574
Score = 590 bits (1521), Expect = e-166
Identities = 329/576 (57%), Positives = 389/576 (67%), Gaps = 28/576 (4%)
Frame = -2
Query: 1806 MVCLLPQFKCSPDTLSTHYRTQTNSL--------KVREPVCSRARCILXXXXXXXXXXXX 1651
M CLLPQF C PDT S + +T+SL K R+ + S A+C+L
Sbjct: 1 MSCLLPQFNCKPDTFSAQFNFRTHSLPTPNSHLPKARD-INSLAQCVLSTTSPSTSVGAT 59
Query: 1650 XXTVVDVEKLGLTSLEAHTNSVAADRLLSYIGPIGPPTKPNFEATLATEALLTSEEXXXX 1471
V+ VEKL SL+A++ SV ++R +Y G GPP + NFEATLATE LLTSEE
Sbjct: 60 Y--VLSVEKLRFPSLDANSESVTSNRPWTYTGATGPPVEANFEATLATETLLTSEEAVIA 117
Query: 1470 XXXXXXXXXXXXXXXXXXAQDL-----TLMEQVRTIRHHPVGAKTKQD------------ 1342
L T E + + KT Q
Sbjct: 118 AAAAEAVTLAKAAVKVAKDAALLVRPSTRAESISLVSSEARNIKTAQAASRVRDSLRAEM 177
Query: 1341 ---EEHSIQFSQKDSENLVPTDDELKLQEMQLYTSIDVRSGRQTEXXXXXXXXXXXXXAN 1171
E+H + + K+S +L PT++EL++ + QL SI VRS RQ+E AN
Sbjct: 178 ALIEDHPPKDAAKESNDLQPTNEELRILQEQLSKSIAVRSRRQSERKAKRDRAAEKAAAN 237
Query: 1170 VFFGNPRTSRRKKRVALHEVDYSDPXXXXXXXXXXXXXXXXXXXXEFSEGIQELLKLENL 991
V ++ RKKR ++ +VD+SDP E SEGIQ+LLKLE L
Sbjct: 238 VVAVKSGSNSRKKRASVQDVDHSDPLRYLRSTTSTSRLLTATEEIELSEGIQDLLKLEKL 297
Query: 990 HRELAERCGVQPTFVQWAEAAGVDQKTLRKCINYGVLCKEKMVKSNIRLVISIAKNYQGA 811
ELAERCG PTF QWA AAGVDQKTLR+ INYG+LCK+KM+KSN+RLVISIAKNYQGA
Sbjct: 298 QEELAERCGGPPTFAQWAAAAGVDQKTLRRRINYGILCKDKMIKSNVRLVISIAKNYQGA 357
Query: 810 GMNLQDLVQEGCRGLVKGAEKFDASKGFRFSTYAHWWIKQAVQKSLSEQSRTIRLPSHMV 631
GMNLQDLVQEGCRGLV+GAEKFDASKGF+FSTYAHWWIKQAV+KSLS+QSRTIRLP HMV
Sbjct: 358 GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMV 417
Query: 630 EATYRVREARKQLYCEYGRHPDNEEIAEATGLSMKRLTAVLLTPRPPRSLDQKIGINQNL 451
EATYRV+EARKQLY E GR P++EE+AEATGLSMKRL AVLLTP+ PRSL+QKIGINQNL
Sbjct: 418 EATYRVKEARKQLYSENGRQPNDEEVAEATGLSMKRLAAVLLTPKAPRSLEQKIGINQNL 477
Query: 450 KPLEVITCPGAETTEDLLNKQFMQQDLERVLDSLNSRENQVIRWRFGLKDGRMRTLQEIG 271
KP E+I P AET ED+L +QFM+QDL++VLDSLN RE QVIRWRFG+ DGRM+TLQEIG
Sbjct: 478 KPSEIIADPDAETLEDVLTRQFMKQDLDKVLDSLNQREKQVIRWRFGMDDGRMKTLQEIG 537
Query: 270 ELMGVSRERIRQIETCAFRKLKNKKRTKILQQYLVS 163
ELMGVSRERIRQIE+CAFRKLKNKKRTK LQQYL+S
Sbjct: 538 ELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLIS 573
>emb|CBI40014.3| unnamed protein product [Vitis vinifera]
Length = 575
Score = 590 bits (1520), Expect = e-165
Identities = 332/578 (57%), Positives = 390/578 (67%), Gaps = 30/578 (5%)
Frame = -2
Query: 1806 MVCLLPQFKCSPDTLSTHYRTQTNSLKVREPVCSRARCILXXXXXXXXXXXXXXTVVDVE 1627
M CLLPQFKC PDT STH + S K RE + R +C L V+D+E
Sbjct: 1 MSCLLPQFKCPPDTFSTHPKLHILS-KNREAIYFRVQCALSTTSPPLSTSTTA--VLDIE 57
Query: 1626 KLGLTSLEAHTNSVAADRLLSYIGPIGPPTKPNFEATLATE------------------- 1504
KL L SLE+H+NSVAA R +YIG +GPPT+ NFEATLA E
Sbjct: 58 KLRLPSLESHSNSVAAHRPWTYIGVVGPPTEANFEATLARETLLTSEEAVIAAAAAEAVA 117
Query: 1503 ----ALLTSEEXXXXXXXXXXXXXXXXXXXXXXAQDLTLMEQVRT-------IRHHPVGA 1357
A+ +++ D + +++ I VGA
Sbjct: 118 LAKAAVKVAKDAARLVGKNNSAKSETKPASFLSGDDTSQFRRIQFTETERIGILGDSVGA 177
Query: 1356 KTKQDEEHSIQFSQKDSENLVPTDDELKLQEMQLYTSIDVRSGRQTEXXXXXXXXXXXXX 1177
+T + +S+Q +DS++L PT +EL+L E + SI VRS RQ E
Sbjct: 178 ETGMVDYNSLQDVTEDSDDLEPTLEELELLEAEFSKSIVVRSNRQVERKARRARAAEKAS 237
Query: 1176 ANVFFGNPRTSRRKKRVALHEVDYSDPXXXXXXXXXXXXXXXXXXXXEFSEGIQELLKLE 997
A V ++ R+KRV+L EVDYSDP E SEGIQ+LLKLE
Sbjct: 238 AGVVSVRSGSTSRRKRVSLQEVDYSDPLRYLRGTTSTSRLLTATEELELSEGIQDLLKLE 297
Query: 996 NLHRELAERCGVQPTFVQWAEAAGVDQKTLRKCINYGVLCKEKMVKSNIRLVISIAKNYQ 817
L +L ER GV+PTF QWA AAGVDQKTLR+ NYG+ CK+KM+KSNIRLVISIAKNYQ
Sbjct: 298 KLQEDLEERFGVKPTFAQWAAAAGVDQKTLRRRTNYGIRCKDKMIKSNIRLVISIAKNYQ 357
Query: 816 GAGMNLQDLVQEGCRGLVKGAEKFDASKGFRFSTYAHWWIKQAVQKSLSEQSRTIRLPSH 637
GAGMN+QDLVQEGCRGLV+GAEKFDASKGF+FSTYAHWWIKQAV+KSLS+QSRTIRLP H
Sbjct: 358 GAGMNIQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFH 417
Query: 636 MVEATYRVREARKQLYCEYGRHPDNEEIAEATGLSMKRLTAVLLTPRPPRSLDQKIGINQ 457
MVEATYRV+EARKQLY E GRHP+NEE+AEATGLSMKRL AVLLTP+ PRSLDQKIGINQ
Sbjct: 418 MVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLNAVLLTPKAPRSLDQKIGINQ 477
Query: 456 NLKPLEVITCPGAETTEDLLNKQFMQQDLERVLDSLNSRENQVIRWRFGLKDGRMRTLQE 277
NLKP EVI P AET E+LL KQFM++DLE+VL+SLN RE QVIRWR+GL+DGR +TLQE
Sbjct: 478 NLKPSEVIADPDAETAEELLIKQFMREDLEKVLNSLNPREKQVIRWRYGLEDGRTKTLQE 537
Query: 276 IGELMGVSRERIRQIETCAFRKLKNKKRTKILQQYLVS 163
IGELMGVSRERIRQIE+CAFRKLKNK+RTK LQQYLVS
Sbjct: 538 IGELMGVSRERIRQIESCAFRKLKNKRRTKHLQQYLVS 575
>ref|XP_002273602.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera]
Length = 578
Score = 589 bits (1519), Expect = e-165
Identities = 332/580 (57%), Positives = 390/580 (67%), Gaps = 32/580 (5%)
Frame = -2
Query: 1806 MVCLLPQFKCSPDTLSTHYRTQT--NSLKVREPVCSRARCILXXXXXXXXXXXXXXTVVD 1633
M CLLPQFKC PDT STH + S K RE + R +C L V+D
Sbjct: 1 MSCLLPQFKCPPDTFSTHPKLHILCKSPKNREAIYFRVQCALSTTSPPLSTSTTA--VLD 58
Query: 1632 VEKLGLTSLEAHTNSVAADRLLSYIGPIGPPTKPNFEATLATE----------------- 1504
+EKL L SLE+H+NSVAA R +YIG +GPPT+ NFEATLA E
Sbjct: 59 IEKLRLPSLESHSNSVAAHRPWTYIGVVGPPTEANFEATLARETLLTSEEAVIAAAAAEA 118
Query: 1503 ------ALLTSEEXXXXXXXXXXXXXXXXXXXXXXAQDLTLMEQVRT-------IRHHPV 1363
A+ +++ D + +++ I V
Sbjct: 119 VALAKAAVKVAKDAARLVGKNNSAKSETKPASFLSGDDTSQFRRIQFTETERIGILGDSV 178
Query: 1362 GAKTKQDEEHSIQFSQKDSENLVPTDDELKLQEMQLYTSIDVRSGRQTEXXXXXXXXXXX 1183
GA+T + +S+Q +DS++L PT +EL+L E + SI VRS RQ E
Sbjct: 179 GAETGMVDYNSLQDVTEDSDDLEPTLEELELLEAEFSKSIVVRSNRQVERKARRARAAEK 238
Query: 1182 XXANVFFGNPRTSRRKKRVALHEVDYSDPXXXXXXXXXXXXXXXXXXXXEFSEGIQELLK 1003
A V ++ R+KRV+L EVDYSDP E SEGIQ+LLK
Sbjct: 239 ASAGVVSVRSGSTSRRKRVSLQEVDYSDPLRYLRGTTSTSRLLTATEELELSEGIQDLLK 298
Query: 1002 LENLHRELAERCGVQPTFVQWAEAAGVDQKTLRKCINYGVLCKEKMVKSNIRLVISIAKN 823
LE L +L ER GV+PTF QWA AAGVDQKTLR+ NYG+ CK+KM+KSNIRLVISIAKN
Sbjct: 299 LEKLQEDLEERFGVKPTFAQWAAAAGVDQKTLRRRTNYGIRCKDKMIKSNIRLVISIAKN 358
Query: 822 YQGAGMNLQDLVQEGCRGLVKGAEKFDASKGFRFSTYAHWWIKQAVQKSLSEQSRTIRLP 643
YQGAGMN+QDLVQEGCRGLV+GAEKFDASKGF+FSTYAHWWIKQAV+KSLS+QSRTIRLP
Sbjct: 359 YQGAGMNIQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLP 418
Query: 642 SHMVEATYRVREARKQLYCEYGRHPDNEEIAEATGLSMKRLTAVLLTPRPPRSLDQKIGI 463
HMVEATYRV+EARKQLY E GRHP+NEE+AEATGLSMKRL AVLLTP+ PRSLDQKIGI
Sbjct: 419 FHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLNAVLLTPKAPRSLDQKIGI 478
Query: 462 NQNLKPLEVITCPGAETTEDLLNKQFMQQDLERVLDSLNSRENQVIRWRFGLKDGRMRTL 283
NQNLKP EVI P AET E+LL KQFM++DLE+VL+SLN RE QVIRWR+GL+DGR +TL
Sbjct: 479 NQNLKPSEVIADPDAETAEELLIKQFMREDLEKVLNSLNPREKQVIRWRYGLEDGRTKTL 538
Query: 282 QEIGELMGVSRERIRQIETCAFRKLKNKKRTKILQQYLVS 163
QEIGELMGVSRERIRQIE+CAFRKLKNK+RTK LQQYLVS
Sbjct: 539 QEIGELMGVSRERIRQIESCAFRKLKNKRRTKHLQQYLVS 578
>ref|XP_007029868.1| RNApolymerase sigma subunit 2 [Theobroma cacao]
gi|508718473|gb|EOY10370.1| RNApolymerase sigma subunit 2
[Theobroma cacao]
Length = 623
Score = 582 bits (1499), Expect = e-163
Identities = 342/623 (54%), Positives = 390/623 (62%), Gaps = 75/623 (12%)
Frame = -2
Query: 1806 MVCLLPQFKCSPDTLSTHYRTQ--------------------------TNSLKV------ 1723
M CLLPQFKC PDT S +RT TN KV
Sbjct: 1 MSCLLPQFKCQPDTFSIQFRTHHSHHFLIAVTGMVKYFSPRQCSCGNLTNPPKVSGLIFV 60
Query: 1722 -----REPVCSRARCILXXXXXXXXXXXXXXTVVDVEKLGLTSLEAHTNSVAADRLLSYI 1558
+E +C R +C+L V+DVEKL L S EAH NSVA DR +YI
Sbjct: 61 VLAKHKEHICFRTQCVLSTTSSSTSTTATA--VLDVEKLRLPSFEAHPNSVAVDRPWTYI 118
Query: 1557 GPIGPPTKPNFEATLATE------------------------------ALLTSEEXXXXX 1468
G GPP++ + ATLAT+ A L +E
Sbjct: 119 GATGPPSEASLGATLATDNLLTSDEAVIAAAAAEAVALARAAVKVAKDAALMAENYNYAK 178
Query: 1467 XXXXXXXXXXXXXXXXXAQDLTLMEQVRTIRHHPVGAKTKQDEEHSIQFSQKDSENLVPT 1288
T E+ I P +++ +E+ S Q S +S+ L PT
Sbjct: 179 TEMKSGVSFATDSFTSKWALFTEAERAGIIGDSPTD-ESEMEEDDSEQNSTTESDELEPT 237
Query: 1287 DDELKLQEMQLYTSIDVRSGRQTEXXXXXXXXXXXXXANVFFGNPRTSRRKKRVALHEVD 1108
++EL+ E QL SI VRS RQTE ANV ++ RK+R AL +VD
Sbjct: 238 NEELEHLEEQLSRSIAVRSRRQTERKAKRTRAAEKAAANVVSVKSGSTNRKRRGALQDVD 297
Query: 1107 YSDPXXXXXXXXXXXXXXXXXXXXEFSEGIQELLKLENLHRELAERCGVQPTFVQWAEAA 928
YSDP E SEGIQ+LLKLE L ELAERCG QPTF QWA AA
Sbjct: 298 YSDPLRYLRGTTSTSRLLTANEELELSEGIQDLLKLERLQEELAERCGGQPTFAQWAAAA 357
Query: 927 GVDQKTLRKCINYGVLCKEKMVKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVKGAEK 748
GVDQKTLR +NYGV CK+KM+KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLV+GAEK
Sbjct: 358 GVDQKTLRSRLNYGVHCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 417
Query: 747 FDASKGFRFSTYAHWWIKQAVQKSLSEQSRTIRLPSHMVEATYRVREARKQLYCEYGRHP 568
FDASKGF+FSTYAHWWIKQAV+KSLS+QSRTIRLP HMVEATYRV+EARKQLY E GRHP
Sbjct: 418 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHP 477
Query: 567 DNEEIAEATGLSMKRLTAVLLTPRPPRSLDQKIGINQNLKP--------LEVITCPGAET 412
DNEE+AEATGLSMKRLTAVLLTP+ PRSLDQKIGINQNLKP EVI P AET
Sbjct: 478 DNEEVAEATGLSMKRLTAVLLTPKAPRSLDQKIGINQNLKPSVCPVSSLAEVIADPEAET 537
Query: 411 TEDLLNKQFMQQDLERVLDSLNSRENQVIRWRFGLKDGRMRTLQEIGELMGVSRERIRQI 232
ED+L KQFM++DLE+VLDSL+ RE QVIRWRFG++DGRM+TLQEIGELMGVSRERIRQI
Sbjct: 538 AEDMLIKQFMRKDLEKVLDSLSQRERQVIRWRFGMEDGRMKTLQEIGELMGVSRERIRQI 597
Query: 231 ETCAFRKLKNKKRTKILQQYLVS 163
E+CAFRKLKNKKRTK LQQYL+S
Sbjct: 598 ESCAFRKLKNKKRTKHLQQYLLS 620
>ref|XP_006484754.1| PREDICTED: RNA polymerase sigma factor sigB-like isoform X1 [Citrus
sinensis]
Length = 605
Score = 577 bits (1488), Expect = e-162
Identities = 327/585 (55%), Positives = 382/585 (65%), Gaps = 37/585 (6%)
Frame = -2
Query: 1806 MVCLLPQFKCSPDTLSTHYRTQTNSL-------KVREPVCSRARCILXXXXXXXXXXXXX 1648
M CLLPQFKC PDT S H+RT N K +EP+C R C+L
Sbjct: 24 MSCLLPQFKCQPDTFSIHFRTLHNHQHHSSHPSKSKEPICFRTHCVLSTTSPSTSTAMTT 83
Query: 1647 XTVVDVEKLGLTSLEAHTNSVAADRLLSYIGPIGPPTKPNFEATLATE------------ 1504
V+DVEKL L SLEAH+N+VAA+R +Y G +GP T+ N +LATE
Sbjct: 84 --VLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLTSDEAVIAAA 141
Query: 1503 ------------------ALLTSEEXXXXXXXXXXXXXXXXXXXXXXAQDLTLMEQVRTI 1378
AL+ + AQ LT E+ I
Sbjct: 142 SAEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISLSADTNTSMWAQ-LTERERASII 200
Query: 1377 RHHPVGAKTKQDEEHSIQFSQKDSENLVPTDDELKLQEMQLYTSIDVRSGRQTEXXXXXX 1198
+ + +EE+S Q S +L PT +ELKL E Q+ SI VRS RQTE
Sbjct: 201 GDSVI-VEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRT 259
Query: 1197 XXXXXXXANVFFGNPRTSRRKKRVALHEVDYSDPXXXXXXXXXXXXXXXXXXXXEFSEGI 1018
ANV ++ R+KR ++ EVDYSDP + S GI
Sbjct: 260 RAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGI 319
Query: 1017 QELLKLENLHRELAERCGVQPTFVQWAEAAGVDQKTLRKCINYGVLCKEKMVKSNIRLVI 838
Q+LLKLE L L+ERCG PTF QWA AAGVDQ+ LR+ +NYG+LCK+KM+ SNIRLVI
Sbjct: 320 QDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVI 379
Query: 837 SIAKNYQGAGMNLQDLVQEGCRGLVKGAEKFDASKGFRFSTYAHWWIKQAVQKSLSEQSR 658
SIAKNYQGAGMNLQDLVQEGCRGLV+GAEKFDASKGF+FSTYAHWWIKQAV+KSLS+QSR
Sbjct: 380 SIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSR 439
Query: 657 TIRLPSHMVEATYRVREARKQLYCEYGRHPDNEEIAEATGLSMKRLTAVLLTPRPPRSLD 478
TIRLP HMVEATYRV+EARKQLY E GRHP+NEE+AEATGLSMKRL AVLLTP+ PRSLD
Sbjct: 440 TIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLTPKAPRSLD 499
Query: 477 QKIGINQNLKPLEVITCPGAETTEDLLNKQFMQQDLERVLDSLNSRENQVIRWRFGLKDG 298
QK GINQNLKP EVI P AET EDLL K+FM++DLE+VLD+LN RE QV+RWRFGL+DG
Sbjct: 500 QKFGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDG 559
Query: 297 RMRTLQEIGELMGVSRERIRQIETCAFRKLKNKKRTKILQQYLVS 163
RM+TLQEIGELMGVSRERIRQIE+ AFRKLKNKKRTK L QY ++
Sbjct: 560 RMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAIT 604
>ref|XP_006437338.1| hypothetical protein CICLE_v10030998mg [Citrus clementina]
gi|557539534|gb|ESR50578.1| hypothetical protein
CICLE_v10030998mg [Citrus clementina]
Length = 605
Score = 574 bits (1479), Expect = e-161
Identities = 325/585 (55%), Positives = 381/585 (65%), Gaps = 37/585 (6%)
Frame = -2
Query: 1806 MVCLLPQFKCSPDTLSTHYRTQTNSL-------KVREPVCSRARCILXXXXXXXXXXXXX 1648
M CLLPQFKC PDT S H+RT N K +EP+C R C+L
Sbjct: 24 MSCLLPQFKCQPDTFSIHFRTLHNHQHHSSHPSKSKEPICFRTHCVLSTTSPSTSTAMTT 83
Query: 1647 XTVVDVEKLGLTSLEAHTNSVAADRLLSYIGPIGPPTKPNFEATLATE------------ 1504
V+DVEKL L SLEAH+N+VAA+R +Y G +GP T+ N +LATE
Sbjct: 84 --VLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLTSDEAVIAAA 141
Query: 1503 ------------------ALLTSEEXXXXXXXXXXXXXXXXXXXXXXAQDLTLMEQVRTI 1378
AL+ + AQ LT E+ I
Sbjct: 142 SAEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISLSADTSTSMWAQ-LTERERASII 200
Query: 1377 RHHPVGAKTKQDEEHSIQFSQKDSENLVPTDDELKLQEMQLYTSIDVRSGRQTEXXXXXX 1198
+ + +EE+S Q S +L PT +ELKL E Q+ SI VRS RQTE
Sbjct: 201 GDSVI-VEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRT 259
Query: 1197 XXXXXXXANVFFGNPRTSRRKKRVALHEVDYSDPXXXXXXXXXXXXXXXXXXXXEFSEGI 1018
ANV ++ R+KR ++ EVDYSDP + S GI
Sbjct: 260 RAAEKAAANVMSVKSGSTTRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGI 319
Query: 1017 QELLKLENLHRELAERCGVQPTFVQWAEAAGVDQKTLRKCINYGVLCKEKMVKSNIRLVI 838
Q+LLKLE L L+ERCG PTF QWA AAGVDQ+ LR+ +NYG+LCK+KM+ SNIRLVI
Sbjct: 320 QDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVI 379
Query: 837 SIAKNYQGAGMNLQDLVQEGCRGLVKGAEKFDASKGFRFSTYAHWWIKQAVQKSLSEQSR 658
SIAKNYQGAGMNLQDLVQEGCRGLV+GAEKFDASKGF+FSTYAHWWIKQAV+KSLS+QSR
Sbjct: 380 SIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSR 439
Query: 657 TIRLPSHMVEATYRVREARKQLYCEYGRHPDNEEIAEATGLSMKRLTAVLLTPRPPRSLD 478
TIRLP HMVEATYRV+EARKQLY E GRHP+NEE+A+ATGLSMKRL AVLL P+ PRSLD
Sbjct: 440 TIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAKATGLSMKRLHAVLLAPKAPRSLD 499
Query: 477 QKIGINQNLKPLEVITCPGAETTEDLLNKQFMQQDLERVLDSLNSRENQVIRWRFGLKDG 298
QK GINQNLKP EVI P AET EDLL K+FM++DLE+VLD+LN RE QV+RWRFGL+DG
Sbjct: 500 QKFGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDG 559
Query: 297 RMRTLQEIGELMGVSRERIRQIETCAFRKLKNKKRTKILQQYLVS 163
RM+TLQEIGELMGVSRERIRQIE+ AFRKLKNKKRTK L QY ++
Sbjct: 560 RMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAIT 604
>ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
gi|223536699|gb|EEF38340.1| RNA polymerase sigma factor
rpoD1, putative [Ricinus communis]
Length = 569
Score = 560 bits (1444), Expect = e-157
Identities = 325/583 (55%), Positives = 379/583 (65%), Gaps = 35/583 (6%)
Frame = -2
Query: 1806 MVCLLPQFKCSPDTLSTHYRTQ-------TNSLKVREPVCSRARCILXXXXXXXXXXXXX 1648
M CLLPQFKC PDT S H+R T S K REP+ RA+CIL
Sbjct: 2 MSCLLPQFKCQPDTFSIHFRANYFHFSNVTQSTKSREPIYYRAQCILSTTSPSTSTA--- 58
Query: 1647 XTVVDVEKLGLTSLEAHTNSVAADRLLSYIGPIGPPTKPNFEATLATEALLTSEEXXXXX 1468
V+D+EKL L S EA ++S+A P P T F +TLATE L+TS+E
Sbjct: 59 --VLDLEKLRLPSFEAPSDSIA---------PNSPWTYATFGSTLATETLITSDEAVIAA 107
Query: 1467 XXXXXXXXXXXXXXXXXAQDL----------------------------TLMEQVRTIRH 1372
L T E+ R I
Sbjct: 108 AAAEAVALARAAVKVAKDAALLVKNFPSAETESKLTSPSTIDASRWPQFTETERARIIGD 167
Query: 1371 HPVGAKTKQDEEHSIQFSQKDSENLVPTDDELKLQEMQLYTSIDVRSGRQTEXXXXXXXX 1192
V +T EE S+Q S K+S+ L T EL+L + QL I VRS RQTE
Sbjct: 168 S-VATETGPREESSMQSSIKESDYLELTHKELELLQKQLSEGIAVRSRRQTERKARRARA 226
Query: 1191 XXXXXANVFFGNPRTSRRKKRVALHEVDYSDPXXXXXXXXXXXXXXXXXXXXEFSEGIQE 1012
++V P ++ +KKR +L EVDYSDP E S IQ+
Sbjct: 227 VEKAASSVVSVKPGSTSKKKRGSLQEVDYSDPLRYLRGTTSTSRLLTASEELELSAAIQD 286
Query: 1011 LLKLENLHRELAERCGVQPTFVQWAEAAGVDQKTLRKCINYGVLCKEKMVKSNIRLVISI 832
LLKLE L ELAER G QPTF QWA AAGVDQ+TLRK IN+G +CK+KM+KSNIRLVISI
Sbjct: 287 LLKLERLQEELAERYGGQPTFAQWAAAAGVDQRTLRKRINHGTICKDKMIKSNIRLVISI 346
Query: 831 AKNYQGAGMNLQDLVQEGCRGLVKGAEKFDASKGFRFSTYAHWWIKQAVQKSLSEQSRTI 652
AKNYQGAGMNLQDLVQEGCRGLV+GAEKFDASKGF+FSTYAHWWIKQAV+KSLS+QSRTI
Sbjct: 347 AKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTI 406
Query: 651 RLPSHMVEATYRVREARKQLYCEYGRHPDNEEIAEATGLSMKRLTAVLLTPRPPRSLDQK 472
RLP HMVEATYRV+EARKQLY E GRHPD+EE+AEA GLSMKRL+AVLLTP+ PRSLDQK
Sbjct: 407 RLPFHMVEATYRVKEARKQLYSENGRHPDDEEVAEAAGLSMKRLSAVLLTPKAPRSLDQK 466
Query: 471 IGINQNLKPLEVITCPGAETTEDLLNKQFMQQDLERVLDSLNSRENQVIRWRFGLKDGRM 292
IG+N +LKP EVI P AET E+LL KQFM+QDLE+VL++LN RE QV+RWRFGL+DGRM
Sbjct: 467 IGMNMDLKPSEVIADPEAETAEELLMKQFMKQDLEKVLNTLNPRETQVVRWRFGLEDGRM 526
Query: 291 RTLQEIGELMGVSRERIRQIETCAFRKLKNKKRTKILQQYLVS 163
+TLQEIGE+MGVSRERIRQIE+ AFRKLKNKKRTK L+QYL++
Sbjct: 527 KTLQEIGEIMGVSRERIRQIESSAFRKLKNKKRTKQLKQYLLA 569
>ref|XP_004303327.1| PREDICTED: RNA polymerase sigma factor sigB-like [Fragaria vesca
subsp. vesca]
Length = 616
Score = 555 bits (1431), Expect = e-155
Identities = 301/522 (57%), Positives = 362/522 (69%), Gaps = 29/522 (5%)
Frame = -2
Query: 1641 VVDVEKLGLTSLEAHTNSVAADRLLSYIGPIGPPTKPNFEATLATEALLTSEEXXXXXXX 1462
++D+E+ L SL +++S+ +R +Y G IGPPT+ N+ A LATE LLTSEE
Sbjct: 95 LLDMEEFSLPSLTVNSDSLIVNRPWTYTGAIGPPTEANYGAALATETLLTSEEAVIAAAA 154
Query: 1461 XXXXXXXXXXXXXXXAQDLTL----------------------------MEQVRTIR-HH 1369
L + +E T+R
Sbjct: 155 AEAVTLAKAALKVAKDVALLVSNNHYAKVENSSPVSCGTSAFHINWAQHLETEPTLRIGD 214
Query: 1368 PVGAKTKQDEEHSIQFSQKDSENLVPTDDELKLQEMQLYTSIDVRSGRQTEXXXXXXXXX 1189
+ ++T E+H +Q + +SEN+ P ++E +L + QL I RS RQTE
Sbjct: 215 SMASETALVEDHFLQIAINESENVEPANEEFELLQEQLSNGIAARSSRQTERKARRTRAA 274
Query: 1188 XXXXANVFFGNPRTSRRKKRVALHEVDYSDPXXXXXXXXXXXXXXXXXXXXEFSEGIQEL 1009
A++ ++ RKKR +L +VD+SDP E SEGIQEL
Sbjct: 275 EKAAASIVSVKSGSTSRKKRASLQDVDHSDPLRYLRATTHTSRLLTANEEIELSEGIQEL 334
Query: 1008 LKLENLHRELAERCGVQPTFVQWAEAAGVDQKTLRKCINYGVLCKEKMVKSNIRLVISIA 829
LKLE L +LA+RCG QPTF QWA AAGVDQKTLRK +NYG++CK+KM+KSNIRLVISIA
Sbjct: 335 LKLEKLQEDLAQRCGTQPTFAQWAAAAGVDQKTLRKRVNYGIMCKDKMIKSNIRLVISIA 394
Query: 828 KNYQGAGMNLQDLVQEGCRGLVKGAEKFDASKGFRFSTYAHWWIKQAVQKSLSEQSRTIR 649
KNYQGAGMNLQDLVQEGCRGLV+GAEKFDASKGF+FSTYAHWWIKQAV+KSLS+QSRTIR
Sbjct: 395 KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR 454
Query: 648 LPSHMVEATYRVREARKQLYCEYGRHPDNEEIAEATGLSMKRLTAVLLTPRPPRSLDQKI 469
LP HMVEATYRVREA+KQLY GRHP++EE+AEATGLSMKRL AVLLTP+ PRSL+QKI
Sbjct: 455 LPFHMVEATYRVREAKKQLYSVNGRHPNDEEVAEATGLSMKRLAAVLLTPKAPRSLEQKI 514
Query: 468 GINQNLKPLEVITCPGAETTEDLLNKQFMQQDLERVLDSLNSRENQVIRWRFGLKDGRMR 289
GINQNLKP +VI P AET EDLL K+FM+QDLE+VLDSLN RE QVIRWRFG++DGRM+
Sbjct: 515 GINQNLKPSDVIADPDAETAEDLLMKKFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMK 574
Query: 288 TLQEIGELMGVSRERIRQIETCAFRKLKNKKRTKILQQYLVS 163
TLQEIGELMGVSRERIRQIE+CAFRKLKNKKRTK LQQY++S
Sbjct: 575 TLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYVLS 616
>ref|XP_004145011.1| PREDICTED: RNA polymerase sigma factor sigB-like [Cucumis sativus]
gi|449473951|ref|XP_004154029.1| PREDICTED: RNA
polymerase sigma factor sigB-like [Cucumis sativus]
Length = 580
Score = 550 bits (1416), Expect = e-153
Identities = 317/591 (53%), Positives = 380/591 (64%), Gaps = 43/591 (7%)
Frame = -2
Query: 1806 MVCLLPQFKCSPDTLSTHYRTQTNS--------------LKVREPVCSRARCILXXXXXX 1669
M CLLPQFKC P+T S ++T N KVR+P R +CIL
Sbjct: 1 MSCLLPQFKCHPETFSIQFKTAANYSHHHSFLPTAYSSYTKVRDPHSLRTQCILSAASPP 60
Query: 1668 XXXXXXXXTVVDVEKLGLTSLEAHTNSVAADRLLSYIGPIGPPTKPNFEATLATEALLTS 1489
+DV++L L + +T+SV+ +RL SY+G + E++LA+ LLTS
Sbjct: 61 TSTGTAT--TLDVDRLKLPPFDTNTDSVSVERLRSYLGAV--------ESSLAS-TLLTS 109
Query: 1488 EEXXXXXXXXXXXXXXXXXXXXXXAQDLT----------------------------LME 1393
EE L ME
Sbjct: 110 EEASIAAAAAEAVTLAKAAVKVARDAALLANNINSSRAGTKSQSSPKPDALHFKWAQFME 169
Query: 1392 QVRT-IRHHPVGAKTKQDEEHSIQFSQKDSENLVPTDDELKLQEMQLYTSIDVRSGRQTE 1216
R I PVG + E +++ S +S+++ PT +EL+L + +L SI V+S RQTE
Sbjct: 170 SERADIIGEPVGVNKRPMEGDALEPSTTESDDMEPTSEELELLQDELSESITVKSKRQTE 229
Query: 1215 XXXXXXXXXXXXXANVFFGNPRTSRRKKRVALHEVDYSDPXXXXXXXXXXXXXXXXXXXX 1036
+V +S RKKR ++ EVDYSDP
Sbjct: 230 RKARRTRAAEKTVTSVLSFKSGSSSRKKRNSVQEVDYSDPLRYLRATTNTSRLLTATEEL 289
Query: 1035 EFSEGIQELLKLENLHRELAERCGVQPTFVQWAEAAGVDQKTLRKCINYGVLCKEKMVKS 856
E SEGIQ+LLKLE L EL ER G +PTF QWA AAGV+Q+TLRK +NYG LCK+KM+KS
Sbjct: 290 ELSEGIQDLLKLERLQEELGERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKS 349
Query: 855 NIRLVISIAKNYQGAGMNLQDLVQEGCRGLVKGAEKFDASKGFRFSTYAHWWIKQAVQKS 676
NIRLVISIAKNYQGAGMNLQDLVQEGCRGLV+GAEKFDASKGF+FSTYAHWWIKQAV+K
Sbjct: 350 NIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKF 409
Query: 675 LSEQSRTIRLPSHMVEATYRVREARKQLYCEYGRHPDNEEIAEATGLSMKRLTAVLLTPR 496
LS+QSRTIRLP HMVEATYRV+EARKQL E GRHPD++EIAEA GLSMKRL AVL+TP+
Sbjct: 410 LSDQSRTIRLPFHMVEATYRVKEARKQLLHENGRHPDDKEIAEAAGLSMKRLAAVLMTPK 469
Query: 495 PPRSLDQKIGINQNLKPLEVITCPGAETTEDLLNKQFMQQDLERVLDSLNSRENQVIRWR 316
PRSL+QKIGINQNLKP EVI+ P AET ED+L KQFM+QDLE+VLDSLN RE QVIRWR
Sbjct: 470 APRSLEQKIGINQNLKPSEVISDPEAETCEDMLIKQFMKQDLEKVLDSLNPREKQVIRWR 529
Query: 315 FGLKDGRMRTLQEIGELMGVSRERIRQIETCAFRKLKNKKRTKILQQYLVS 163
FG++DGRM+TLQEIGE+MGVSRERIRQIE+CAFRKLKNKKRTK LQQY++S
Sbjct: 530 FGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYVMS 580
>gb|EYU27177.1| hypothetical protein MIMGU_mgv1a003367mg [Mimulus guttatus]
Length = 589
Score = 546 bits (1408), Expect = e-153
Identities = 314/597 (52%), Positives = 389/597 (65%), Gaps = 50/597 (8%)
Frame = -2
Query: 1806 MVCLLPQFKCSPDTLSTHYRTQT----NSLKVREPVCSRARCILXXXXXXXXXXXXXXTV 1639
M CLLPQFKCSPDT + ++++QT +S K RE + R +C+L +
Sbjct: 1 MSCLLPQFKCSPDTFAVNFKSQTLFTVHSSKSRESINFRTQCVLSTTSPPPTMAATTT-L 59
Query: 1638 VDVEKLGLTSLEAHTNSVAADR--------------------------LLSYIGPIGPPT 1537
++ EKL L+ LE NS+ ADR L+Y+G +GPP+
Sbjct: 60 LEFEKLQLSPLETIPNSLPADRSWTTPRAKTSLLDLDKLTSLPVASNKTLTYVGSVGPPS 119
Query: 1536 KPNFEATLATEALLTSEEXXXXXXXXXXXXXXXXXXXXXXAQDLTLMEQVR--------- 1384
+ N A L EAL+TS+E +D +M +
Sbjct: 120 EINLGANLDKEALITSDEAVITAAASEALALAKAAVKVA--KDAAMMVSLHRSTKPDTKS 177
Query: 1383 -----------TIRHHPVGAKTKQDEEHSIQFSQKDSENLVPTDDELKLQEMQLYTSIDV 1237
+R +G+ ++++H + S E P+ +EL+L ++QL +SI V
Sbjct: 178 FLEVDTSAERVVVREAEIGSG--ENDDHVLGESDDSEE---PSAEELELLDLQLSSSIAV 232
Query: 1236 RSGRQTEXXXXXXXXXXXXXANVFFGNPRTSRRKKRVALHEVDYSDPXXXXXXXXXXXXX 1057
RS RQ E ANV +S+ KKR + EVDYSDP
Sbjct: 233 RSKRQIERKVRRGRAAEKAAANVVSVKSGSSK-KKRSPVQEVDYSDPLRYLRATTSSTRL 291
Query: 1056 XXXXXXXEFSEGIQELLKLENLHRELAERCGVQPTFVQWAEAAGVDQKTLRKCINYGVLC 877
SEGIQ LLKLE L EL ER G +P++ QWA AAGVDQKTLR+ INYG+LC
Sbjct: 292 LTASEEQVLSEGIQVLLKLERLQVELIERFGGEPSYSQWAAAAGVDQKTLREQINYGILC 351
Query: 876 KEKMVKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVKGAEKFDASKGFRFSTYAHWWI 697
K+KM+KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLV+GAEKFDA+KGF+FSTYAHWWI
Sbjct: 352 KDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWI 411
Query: 696 KQAVQKSLSEQSRTIRLPSHMVEATYRVREARKQLYCEYGRHPDNEEIAEATGLSMKRLT 517
KQAV+KSLS+QSRTIRLP HMVEATYRV+EARKQLY E GR P++EE+AEATGLSMKRL+
Sbjct: 412 KQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRVPNDEEVAEATGLSMKRLS 471
Query: 516 AVLLTPRPPRSLDQKIGINQNLKPLEVITCPGAETTEDLLNKQFMQQDLERVLDSLNSRE 337
AV+LTP+PPRSLDQKIG+NQ+LKP EVI+ P AET+E+LL KQFM+QDL VLDSLN RE
Sbjct: 472 AVMLTPKPPRSLDQKIGVNQDLKPSEVISDPEAETSEELLIKQFMKQDLADVLDSLNPRE 531
Query: 336 NQVIRWRFGLKDGRMRTLQEIGELMGVSRERIRQIETCAFRKLKNKKRTKILQQYLV 166
QV++WRFG++DGRM+TLQEIGELMGVSRER+RQIE+CAFRKLKNKKRTK LQQY++
Sbjct: 532 KQVVKWRFGIEDGRMKTLQEIGELMGVSRERVRQIESCAFRKLKNKKRTKQLQQYVM 588
>ref|XP_002319746.2| SIGMA FACTOR B family protein [Populus trichocarpa]
gi|550325142|gb|EEE95669.2| SIGMA FACTOR B family protein
[Populus trichocarpa]
Length = 567
Score = 542 bits (1397), Expect = e-151
Identities = 306/581 (52%), Positives = 375/581 (64%), Gaps = 33/581 (5%)
Frame = -2
Query: 1806 MVCLLPQFKCSPDTLSTHYRTQ----TNSLKVREPVCSRARCILXXXXXXXXXXXXXXTV 1639
M CLLPQFKC PDT S H+R TN ++ + V S A V
Sbjct: 1 MSCLLPQFKCQPDTFSVHFRNLQHHGTNHTQLPQCVLSSAS--------------PSTAV 46
Query: 1638 VDVEKLGLTSLEAHTNSVAADRLLSYIGPIGPPTKPNFEATLATE--------------- 1504
+D+EKL L SLE H++S++A+R +YIG IGP KP F +LA E
Sbjct: 47 LDLEKLRLPSLEPHSDSISANRPWTYIGGIGPQKKPPFGTSLAAETLIANDEAVIAAAAA 106
Query: 1503 --------ALLTSEEXXXXXXXXXXXXXXXXXXXXXXAQDLTLMEQVRTIRHHP------ 1366
A+ +++ + M + T +
Sbjct: 107 EAVALARAAVKVAKDAAEMAKNYSFMKKETKIPIASTTDSFSSMWSLLTEKERADIIGDS 166
Query: 1365 VGAKTKQDEEHSIQFSQKDSENLVPTDDELKLQEMQLYTSIDVRSGRQTEXXXXXXXXXX 1186
V A+T+ EE+S+Q+ ++ + L PT +EL L + QL I VRS RQTE
Sbjct: 167 VSAETRLREEYSVQYPTEEYDCLEPTQEELALLQKQLSEGIAVRSKRQTERKARRARAAE 226
Query: 1185 XXXANVFFGNPRTSRRKKRVALHEVDYSDPXXXXXXXXXXXXXXXXXXXXEFSEGIQELL 1006
ANV ++ +KKRV L EVD SDP E SEGIQ+LL
Sbjct: 227 KAAANVVSVKSGSTSKKKRVPLQEVDQSDPLRFFRGASSSSRLLSATEEVELSEGIQDLL 286
Query: 1005 KLENLHRELAERCGVQPTFVQWAEAAGVDQKTLRKCINYGVLCKEKMVKSNIRLVISIAK 826
KLE + EL ER G +P+F QWA AAGVDQ TLRK +NYG+LCK+KM+KSN+RLVISIAK
Sbjct: 287 KLERIEEELKERFGGEPSFAQWAAAAGVDQLTLRKRLNYGILCKDKMIKSNVRLVISIAK 346
Query: 825 NYQGAGMNLQDLVQEGCRGLVKGAEKFDASKGFRFSTYAHWWIKQAVQKSLSEQSRTIRL 646
NYQG GMNLQDLVQEGCRGLV+GAEKFDASKGF+FSTYAHWWIKQAV+KSLS++SRTIRL
Sbjct: 347 NYQGTGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDRSRTIRL 406
Query: 645 PSHMVEATYRVREARKQLYCEYGRHPDNEEIAEATGLSMKRLTAVLLTPRPPRSLDQKIG 466
P HMV+ATYRV+EARKQLY E GRHPD++E+AEA GLSMKRL+AVLLTP+ PRSLDQK+G
Sbjct: 407 PFHMVDATYRVKEARKQLYSENGRHPDDKEVAEAAGLSMKRLSAVLLTPKAPRSLDQKMG 466
Query: 465 INQNLKPLEVITCPGAETTEDLLNKQFMQQDLERVLDSLNSRENQVIRWRFGLKDGRMRT 286
N +LK EV P AET EDLL K+FM++DL +VL SL+ RENQV+RWRFG++DGRM+T
Sbjct: 467 FNMDLKLSEVTADPEAETAEDLLMKEFMKKDLAKVLGSLSPRENQVVRWRFGMEDGRMKT 526
Query: 285 LQEIGELMGVSRERIRQIETCAFRKLKNKKRTKILQQYLVS 163
LQEIGELMGVSRER+RQIE AFRKLKNK RTK L+QY+V+
Sbjct: 527 LQEIGELMGVSRERVRQIELSAFRKLKNKNRTKQLRQYMVA 567
>ref|XP_006307126.1| hypothetical protein CARUB_v10008711mg [Capsella rubella]
gi|482575837|gb|EOA40024.1| hypothetical protein
CARUB_v10008711mg [Capsella rubella]
Length = 571
Score = 542 bits (1397), Expect = e-151
Identities = 307/572 (53%), Positives = 370/572 (64%), Gaps = 26/572 (4%)
Frame = -2
Query: 1800 CLLPQFKCSPDTLSTHYRTQTNSLKVRE-PVCSRARCILXXXXXXXXXXXXXXTVVDVEK 1624
CLLPQFKC PD+ S H+RT + K + PV + +C + +DV K
Sbjct: 4 CLLPQFKCQPDSFSIHFRTSFSVSKQNKGPVFFQPQCAVTTSPALLTS------TLDVAK 57
Query: 1623 LGLTSLEAHTNSVAADRLLSYIGPIGPPTKPNFEATLATEALLTSEEXXXXXXXXXXXXX 1444
L L S + ++S +DR +Y G +GP T+ + LA+E LLTS+E
Sbjct: 58 LRLPSFDTDSDSRISDRQWTYTGTVGPSTEAKYLEALASETLLTSDEAVVAAAAAEAVAL 117
Query: 1443 XXXXXXXXXAQDL------------------------TLMEQVRTIRHHPVGAKTKQDEE 1336
L T E+ + H V ++
Sbjct: 118 ARAAVKVAKDATLFKNSNNTNLLISSTADKRSKWDQFTEKERAGILGHLAVSDTGIVSDK 177
Query: 1335 HSIQFSQKDSE-NLVPTDDELKLQEMQLYTSIDVRSGRQTEXXXXXXXXXXXXXANVFFG 1159
+ S K+S +L+ E++L E Q S+ VRS RQTE + +
Sbjct: 178 STAPASNKESSADLISEIQEVELVEEQPAASLAVRSTRQTERKARRAKGLEKSASAIPSV 237
Query: 1158 NPRTSRRKKRVALHEVDYSDPXXXXXXXXXXXXXXXXXXXXEFSEGIQELLKLENLHREL 979
+S RKKRV EVD++DP E S GIQ+LLKLE L EL
Sbjct: 238 KTGSSPRKKRVVAQEVDHNDPLRYLRVTTSSSKLLTVREEHELSAGIQDLLKLERLQAEL 297
Query: 978 AERCGVQPTFVQWAEAAGVDQKTLRKCINYGVLCKEKMVKSNIRLVISIAKNYQGAGMNL 799
ERCG QPTF QWA AAGVDQK+LRK INYG CK+KM+KSNIRLVISIAKNYQGAGMNL
Sbjct: 298 TERCGRQPTFSQWASAAGVDQKSLRKRINYGTQCKDKMIKSNIRLVISIAKNYQGAGMNL 357
Query: 798 QDLVQEGCRGLVKGAEKFDASKGFRFSTYAHWWIKQAVQKSLSEQSRTIRLPSHMVEATY 619
QDLVQEGCRGLV+GAEKFDA+KGF+FSTYAHWWIKQAV+KSLS+QSR IRLP HMVEATY
Sbjct: 358 QDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATY 417
Query: 618 RVREARKQLYCEYGRHPDNEEIAEATGLSMKRLTAVLLTPRPPRSLDQKIGINQNLKPLE 439
RV+EARKQLY E GRHP+NEE+AEATGLSMKRL AVLL+P+PPRSLDQKIG+NQNLKP E
Sbjct: 418 RVKEARKQLYTEKGRHPENEEVAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSE 477
Query: 438 VITCPGAETTEDLLNKQFMQQDLERVLDSLNSRENQVIRWRFGLKDGRMRTLQEIGELMG 259
VI P AET+ED+L KQFM++DL++VLDSL +RE QVIRWRFG++DGRM+TLQEIGELMG
Sbjct: 478 VIADPEAETSEDILIKQFMREDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGELMG 537
Query: 258 VSRERIRQIETCAFRKLKNKKRTKILQQYLVS 163
VSRER+RQIE+ AFRKLKNKKR+ LQQYLV+
Sbjct: 538 VSRERVRQIESSAFRKLKNKKRSNHLQQYLVA 569
>ref|XP_006484755.1| PREDICTED: RNA polymerase sigma factor sigB-like isoform X2 [Citrus
sinensis]
Length = 525
Score = 540 bits (1391), Expect = e-151
Identities = 303/523 (57%), Positives = 354/523 (67%), Gaps = 30/523 (5%)
Frame = -2
Query: 1641 VVDVEKLGLTSLEAHTNSVAADRLLSYIGPIGPPTKPNFEATLATE-------------- 1504
V+DVEKL L SLEAH+N+VAA+R +Y G +GP T+ N +LATE
Sbjct: 4 VLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLTSDEAVIAAASA 63
Query: 1503 ----------------ALLTSEEXXXXXXXXXXXXXXXXXXXXXXAQDLTLMEQVRTIRH 1372
AL+ + AQ LT E+ I
Sbjct: 64 EAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISLSADTNTSMWAQ-LTERERASIIGD 122
Query: 1371 HPVGAKTKQDEEHSIQFSQKDSENLVPTDDELKLQEMQLYTSIDVRSGRQTEXXXXXXXX 1192
+ + +EE+S Q S +L PT +ELKL E Q+ SI VRS RQTE
Sbjct: 123 SVI-VEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRA 181
Query: 1191 XXXXXANVFFGNPRTSRRKKRVALHEVDYSDPXXXXXXXXXXXXXXXXXXXXEFSEGIQE 1012
ANV ++ R+KR ++ EVDYSDP + S GIQ+
Sbjct: 182 AEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQD 241
Query: 1011 LLKLENLHRELAERCGVQPTFVQWAEAAGVDQKTLRKCINYGVLCKEKMVKSNIRLVISI 832
LLKLE L L+ERCG PTF QWA AAGVDQ+ LR+ +NYG+LCK+KM+ SNIRLVISI
Sbjct: 242 LLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISI 301
Query: 831 AKNYQGAGMNLQDLVQEGCRGLVKGAEKFDASKGFRFSTYAHWWIKQAVQKSLSEQSRTI 652
AKNYQGAGMNLQDLVQEGCRGLV+GAEKFDASKGF+FSTYAHWWIKQAV+KSLS+QSRTI
Sbjct: 302 AKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTI 361
Query: 651 RLPSHMVEATYRVREARKQLYCEYGRHPDNEEIAEATGLSMKRLTAVLLTPRPPRSLDQK 472
RLP HMVEATYRV+EARKQLY E GRHP+NEE+AEATGLSMKRL AVLLTP+ PRSLDQK
Sbjct: 362 RLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLTPKAPRSLDQK 421
Query: 471 IGINQNLKPLEVITCPGAETTEDLLNKQFMQQDLERVLDSLNSRENQVIRWRFGLKDGRM 292
GINQNLKP EVI P AET EDLL K+FM++DLE+VLD+LN RE QV+RWRFGL+DGRM
Sbjct: 422 FGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRM 481
Query: 291 RTLQEIGELMGVSRERIRQIETCAFRKLKNKKRTKILQQYLVS 163
+TLQEIGELMGVSRERIRQIE+ AFRKLKNKKRTK L QY ++
Sbjct: 482 KTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAIT 524
>emb|CAD20831.2| sigma factor [Spinacia oleracea]
Length = 575
Score = 532 bits (1370), Expect = e-148
Identities = 302/577 (52%), Positives = 375/577 (64%), Gaps = 31/577 (5%)
Frame = -2
Query: 1806 MVCLLPQFKCSPDTLS--------THYRTQTNSLKVREPVCSRARCILXXXXXXXXXXXX 1651
M CLLPQFKC PDT S + + T+ L+ R+ VC R +C +
Sbjct: 1 MTCLLPQFKCQPDTFSISSVLHPPSASSSATSLLRNRDLVCFRPQCAVSTPPPPTAAAET 60
Query: 1650 XXTVVDVEKLGLTSLEAHTNSVAADRLLSYIGPIGPPTKPNFEATLATEALLTSEEXXXX 1471
+ DVEKL L +E+++NS++A +++ +G P + F+ L + L+ +EE
Sbjct: 61 S--IFDVEKLRLPYVESNSNSLSAFAQSTFLSTLGSPAEVKFDTALTAKLLIENEEAVIA 118
Query: 1470 XXXXXXXXXXXXXXXXXXAQDLTLM----------EQVRTIRHHPVGAKTKQDEEHSIQF 1321
+D LM ++ H GA+ ++E+
Sbjct: 119 AAAAEAVALARAAAKLA--KDAALMAFNSQPTKPVSKLEGQSLHFSGAQLLENEQVGSMR 176
Query: 1320 SQKDSEN-------------LVPTDDELKLQEMQLYTSIDVRSGRQTEXXXXXXXXXXXX 1180
+ + SEN + PT +EL+L E++L SI VRS RQ E
Sbjct: 177 NFEGSENSLREGDTVSEPADMEPTIEELQLLEVELDESITVRSTRQGERKARRARAAEKV 236
Query: 1179 XANVFFGNPRTSRRKKRVALHEVDYSDPXXXXXXXXXXXXXXXXXXXXEFSEGIQELLKL 1000
+NV ++ RKKR ++ EVDYSDP E S GIQ+LLKL
Sbjct: 237 ASNVVSVKVGSNSRKKRTSVQEVDYSDPLRYLRGATNSSRLLTSSEETELSAGIQDLLKL 296
Query: 999 ENLHRELAERCGVQPTFVQWAEAAGVDQKTLRKCINYGVLCKEKMVKSNIRLVISIAKNY 820
E LH EL R G P+FVQWA AAG+DQ+TLR+ +N+G CK+KM+KSN+RLVISIAKNY
Sbjct: 297 EKLHDELKVRFGKSPSFVQWAAAAGIDQRTLRRRLNHGTFCKDKMIKSNVRLVISIAKNY 356
Query: 819 QGAGMNLQDLVQEGCRGLVKGAEKFDASKGFRFSTYAHWWIKQAVQKSLSEQSRTIRLPS 640
QG+GMNLQDLVQEGCRGLV+GAEKFDASKGF+FSTYAHWWIKQAV+KSLS+QSRTIRLP
Sbjct: 357 QGSGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPF 416
Query: 639 HMVEATYRVREARKQLYCEYGRHPDNEEIAEATGLSMKRLTAVLLTPRPPRSLDQKIGIN 460
HMVEATYRV+EARKQL E G+ P+NEE+AEATGLSMKRLTAVL+TP+ PRSLDQKIG N
Sbjct: 417 HMVEATYRVKEARKQLLSENGKQPNNEEVAEATGLSMKRLTAVLMTPKAPRSLDQKIGFN 476
Query: 459 QNLKPLEVITCPGAETTEDLLNKQFMQQDLERVLDSLNSRENQVIRWRFGLKDGRMRTLQ 280
NLKP EVI P AET EDLL KQFM+QDLE+VLD+L+SRE QVIRWRFGL+DGRM+TLQ
Sbjct: 477 MNLKPSEVIADPEAETAEDLLTKQFMRQDLEKVLDTLSSREKQVIRWRFGLEDGRMKTLQ 536
Query: 279 EIGELMGVSRERIRQIETCAFRKLKNKKRTKILQQYL 169
EIGELMGVSRERIRQIE+ AFRKL+NKK+T LQQY+
Sbjct: 537 EIGELMGVSRERIRQIESSAFRKLQNKKKTINLQQYM 573
>ref|XP_006577887.1| PREDICTED: RNA polymerase sigma factor sigB-like [Glycine max]
Length = 564
Score = 528 bits (1360), Expect = e-147
Identities = 302/578 (52%), Positives = 362/578 (62%), Gaps = 30/578 (5%)
Frame = -2
Query: 1806 MVCLLPQFKCSPDTLSTH-YRTQTNSLKVREPVCSRARCILXXXXXXXXXXXXXXTVVDV 1630
M CLLP F C DT TH Y T+ K R +C + +C+L +D
Sbjct: 1 MSCLLPHFNCHLDTFRTHPYALPTHLSKTRPNLCFQPQCVLSATSPSTLLSLEKKLALDA 60
Query: 1629 EKLGLTSLEAHTNSVAADRLLSYIGPIGPPTKPNFEATLATEALLTSEEXXXXXXXXXXX 1450
TS YI + PP + NF++TL+ E+LLT+EE
Sbjct: 61 PSDPNTSWP-------------YIAAVSPPLQANFKSTLSAESLLTNEEAVIVAAASEAL 107
Query: 1449 XXXXXXXXXXXA-----------------------QDLTL-----MEQVRT-IRHHPVGA 1357
DL L ME+V + +GA
Sbjct: 108 ALAKAAAKVAKDAALLVKKKPPAEAEYKSHVSSKSDDLLLKWFKQMEEVEDGVAEESMGA 167
Query: 1356 KTKQDEEHSIQFSQKDSENLVPTDDELKLQEMQLYTSIDVRSGRQTEXXXXXXXXXXXXX 1177
+ E + S+++S+ L P+ +EL+ + QL SI VRS RQTE
Sbjct: 168 GAEIMEGVDVSPSEEESD-LEPSHEELERLQEQLSDSIAVRSRRQTERKAKRVRATEKAT 226
Query: 1176 ANVFFGNPRTSRRKKRVALHEVDYSDPXXXXXXXXXXXXXXXXXXXXEFSEGIQELLKLE 997
N P +S R+KRV++ EVDYSDP + S GIQ+LLKLE
Sbjct: 227 TNFTSFKPGSSSRRKRVSMQEVDYSDPLRYLRTTTSASRLLTPTEEIKLSAGIQDLLKLE 286
Query: 996 NLHRELAERCGVQPTFVQWAEAAGVDQKTLRKCINYGVLCKEKMVKSNIRLVISIAKNYQ 817
+ +LAER G QPTF QWA AGVDQKTLRK +NYG+ CK+KM+KSNIRLVISIAKNYQ
Sbjct: 287 KIQEDLAERFGSQPTFAQWAAVAGVDQKTLRKRLNYGIFCKDKMIKSNIRLVISIAKNYQ 346
Query: 816 GAGMNLQDLVQEGCRGLVKGAEKFDASKGFRFSTYAHWWIKQAVQKSLSEQSRTIRLPSH 637
G+GMNLQDLVQEGCRGLVKGAEKFD +KGF+FSTYAHWWIKQAV+KSLS+QSRTIRLP H
Sbjct: 347 GSGMNLQDLVQEGCRGLVKGAEKFDGTKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFH 406
Query: 636 MVEATYRVREARKQLYCEYGRHPDNEEIAEATGLSMKRLTAVLLTPRPPRSLDQKIGINQ 457
MVEATYRV+EARKQLY E GR PD+EE+AEATGLSMKRL AVL+TP+ PRSL+QKIGINQ
Sbjct: 407 MVEATYRVKEARKQLYSENGRQPDDEEVAEATGLSMKRLNAVLMTPKAPRSLEQKIGINQ 466
Query: 456 NLKPLEVITCPGAETTEDLLNKQFMQQDLERVLDSLNSRENQVIRWRFGLKDGRMRTLQE 277
NLKP EVI+ P AET E+ L KQFM++DLE LDSLN RE QV+RWRFG+ DGR +TLQE
Sbjct: 467 NLKPSEVISDPDAETAEEQLLKQFMKKDLEEALDSLNPRERQVVRWRFGMDDGRTKTLQE 526
Query: 276 IGELMGVSRERIRQIETCAFRKLKNKKRTKILQQYLVS 163
IGE++GVSRERIRQIE+ AF+KLKNKKRT LQQYLVS
Sbjct: 527 IGEMLGVSRERIRQIESSAFKKLKNKKRTNHLQQYLVS 564
>ref|XP_007203880.1| hypothetical protein PRUPE_ppa006657mg [Prunus persica]
gi|462399411|gb|EMJ05079.1| hypothetical protein
PRUPE_ppa006657mg [Prunus persica]
Length = 401
Score = 526 bits (1354), Expect = e-146
Identities = 274/401 (68%), Positives = 314/401 (78%)
Frame = -2
Query: 1365 VGAKTKQDEEHSIQFSQKDSENLVPTDDELKLQEMQLYTSIDVRSGRQTEXXXXXXXXXX 1186
+G++T E H IQ + K+SE++ T+ E +L QL I RS RQ E
Sbjct: 1 MGSETALVENHFIQVAIKESEDVESTNQEFELLREQLSEGITARSSRQIERKARRAKAAE 60
Query: 1185 XXXANVFFGNPRTSRRKKRVALHEVDYSDPXXXXXXXXXXXXXXXXXXXXEFSEGIQELL 1006
A+V ++ RKKR +L +VD+SDP E SEGIQELL
Sbjct: 61 KAAASVVSVKSGSTSRKKRASLQDVDHSDPLRYLRATTHTSRLLTANEEIELSEGIQELL 120
Query: 1005 KLENLHRELAERCGVQPTFVQWAEAAGVDQKTLRKCINYGVLCKEKMVKSNIRLVISIAK 826
KLE L EL +RCG QPT QWA AAGVDQKTLRK INYG+LCK+KM+KSNIRLVISIAK
Sbjct: 121 KLEKLQEELVQRCGGQPTIAQWAAAAGVDQKTLRKRINYGILCKDKMIKSNIRLVISIAK 180
Query: 825 NYQGAGMNLQDLVQEGCRGLVKGAEKFDASKGFRFSTYAHWWIKQAVQKSLSEQSRTIRL 646
NYQGAGMNLQDLVQ+GCRGLV+GAEKFDASKGF+FSTYAHWWIKQAV+KSLS+QSRTIRL
Sbjct: 181 NYQGAGMNLQDLVQQGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRL 240
Query: 645 PSHMVEATYRVREARKQLYCEYGRHPDNEEIAEATGLSMKRLTAVLLTPRPPRSLDQKIG 466
P HMVEATYRVREA+KQLY GRHP++EE+AEATGLSMKRL AVLLTP+ PRSL+QKIG
Sbjct: 241 PFHMVEATYRVREAKKQLYSVNGRHPNDEEVAEATGLSMKRLAAVLLTPKAPRSLEQKIG 300
Query: 465 INQNLKPLEVITCPGAETTEDLLNKQFMQQDLERVLDSLNSRENQVIRWRFGLKDGRMRT 286
INQNLKP EVI P AET ED+L K+FM+QDLE+VLDSLN+RE QV+RWRFGL+DGRM+T
Sbjct: 301 INQNLKPSEVIADPEAETAEDMLMKKFMKQDLEKVLDSLNAREKQVVRWRFGLEDGRMKT 360
Query: 285 LQEIGELMGVSRERIRQIETCAFRKLKNKKRTKILQQYLVS 163
LQEIGELMGVSRERIRQIE+CAFRKLKNKKRTK LQQY+VS
Sbjct: 361 LQEIGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYVVS 401
>ref|XP_002889701.1| hypothetical protein ARALYDRAFT_470915 [Arabidopsis lyrata subsp.
lyrata] gi|297335543|gb|EFH65960.1| hypothetical protein
ARALYDRAFT_470915 [Arabidopsis lyrata subsp. lyrata]
Length = 572
Score = 523 bits (1348), Expect = e-146
Identities = 299/573 (52%), Positives = 368/573 (64%), Gaps = 27/573 (4%)
Frame = -2
Query: 1800 CLLPQFKCSPDTLSTHYRTQTNSLKVRE-PVCSRARCILXXXXXXXXXXXXXXTVVDVEK 1624
CLLPQFKC PD+ S H+RT + K + V + +C + ++DV K
Sbjct: 4 CLLPQFKCPPDSFSIHFRTSFCARKHNKGSVFFQPQCAVSTSPALLTS------MLDVAK 57
Query: 1623 LGLTSLEAHTNSVAADRLLSYIGPIGPPTKPNFEATLATEALLTSEEXXXXXXXXXXXXX 1444
L L S + ++S +DR +Y GP T+ + LA+E LLTS+E
Sbjct: 58 LRLPSFDTDSDSRISDRQWTYTRTDGPSTEAKYLEALASETLLTSDEAVVVAAAAEAVAL 117
Query: 1443 XXXXXXXXXAQDL------------------------TLMEQVRTIRHHPVGAKTKQDEE 1336
L T E+ + H V ++
Sbjct: 118 ARAAVKVAKDATLFKNSNNTNLLISSTADKRSKWDQFTEKERAGILGHLAVSDNGIVSDK 177
Query: 1335 HSIQFSQKDSENLVPTD--DELKLQEMQLYTSIDVRSGRQTEXXXXXXXXXXXXXANVFF 1162
+ S K+S + ++ +E++L E Q S+ VRS RQTE + +
Sbjct: 178 ITAPASNKESPGDLESEKQEEVELLEEQPSVSLAVRSTRQTERKARRAKGLEKTASGIPS 237
Query: 1161 GNPRTSRRKKRVALHEVDYSDPXXXXXXXXXXXXXXXXXXXXEFSEGIQELLKLENLHRE 982
++ RKKR+ EVD++DP E S GIQ+LLKLE L E
Sbjct: 238 VKTGSNPRKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVREEHELSAGIQDLLKLERLQTE 297
Query: 981 LAERCGVQPTFVQWAEAAGVDQKTLRKCINYGVLCKEKMVKSNIRLVISIAKNYQGAGMN 802
L ERCG QPTF QWA AAGVDQK+LRK I++G LCK+KM+KSNIRLVISIAKNYQGAGMN
Sbjct: 298 LTERCGRQPTFAQWASAAGVDQKSLRKRIHHGTLCKDKMIKSNIRLVISIAKNYQGAGMN 357
Query: 801 LQDLVQEGCRGLVKGAEKFDASKGFRFSTYAHWWIKQAVQKSLSEQSRTIRLPSHMVEAT 622
LQDLVQEGCRGLV+GAEKFDA+KGF+FSTYAHWWIKQAV+KSLS+QSR IRLP HMVEAT
Sbjct: 358 LQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEAT 417
Query: 621 YRVREARKQLYCEYGRHPDNEEIAEATGLSMKRLTAVLLTPRPPRSLDQKIGINQNLKPL 442
YRV+EARKQLY E G+HP NEEIAEATGLSMKRL AVLL+P+PPRSLDQKIG+NQNLKP
Sbjct: 418 YRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPS 477
Query: 441 EVITCPGAETTEDLLNKQFMQQDLERVLDSLNSRENQVIRWRFGLKDGRMRTLQEIGELM 262
EVI P A T+ED+L K+FM+QDL++VLDSL +RE QVIRWRFG++DGRM+TLQEIGE+M
Sbjct: 478 EVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMM 537
Query: 261 GVSRERIRQIETCAFRKLKNKKRTKILQQYLVS 163
GVSRER+RQIE+ AFRKLKNKKR+ LQQYLV+
Sbjct: 538 GVSRERVRQIESSAFRKLKNKKRSNHLQQYLVA 570
>ref|NP_172330.1| RNA polymerase sigma subunit 2 [Arabidopsis thaliana]
gi|75219074|sp|O22056.2|SIGB_ARATH RecName: Full=RNA
polymerase sigma factor sigB; Short=Sigma factor B;
Short=Sigma-B; AltName: Full=Protein ABERRANT CHLOROPLAST
1; AltName: Full=RNA polymerase sigma factor sig1;
Short=Atsig1; Short=Sigma factor 1; AltName: Full=RNA
polymerase sigma factor sig2; Short=Atsig2; Short=Sigma
factor 2; AltName: Full=RNA polymerase sigma factor sigA;
Short=Sigma factor A; Short=Sigma-A; Flags: Precursor
gi|6664315|gb|AAF22897.1|AC006932_14 T27G7.22
[Arabidopsis thaliana]
gi|9802550|gb|AAF99752.1|AC003981_2 F22O13.2 [Arabidopsis
thaliana] gi|2443357|dbj|BAA22427.1| SigB [Arabidopsis
thaliana] gi|2597831|emb|CAA75584.1| sigma factor
[Arabidopsis thaliana] gi|2879922|dbj|BAA24825.1| plastid
RNA polymerase sigma-subunit [Arabidopsis thaliana]
gi|5478446|dbj|BAA82449.1| sigma factor SigB [Arabidopsis
thaliana] gi|133778838|gb|ABO38759.1| At1g08540
[Arabidopsis thaliana] gi|332190182|gb|AEE28303.1| RNA
polymerase sigma subunit 2 [Arabidopsis thaliana]
Length = 572
Score = 523 bits (1346), Expect = e-145
Identities = 298/576 (51%), Positives = 369/576 (64%), Gaps = 30/576 (5%)
Frame = -2
Query: 1800 CLLPQFKCSPDTLSTHYRTQTNSLKVREPVCSRARCILXXXXXXXXXXXXXXTVVDVEKL 1621
CLLPQFKC PD+ S H+RT + P ++ +++DV KL
Sbjct: 4 CLLPQFKCPPDSFSIHFRTSFCA-----PKHNKGSVFFQPQCAVSTSPALLTSMLDVAKL 58
Query: 1620 GLTSLEAHTNSVAADRLLSYIGPIGPPTKPNFEATLATEALLTSEEXXXXXXXXXXXXXX 1441
L S + ++S+ +DR +Y P GP T+ + LA+E LLTS+E
Sbjct: 59 RLPSFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALASETLLTSDEAVVVAAAAEAVALA 118
Query: 1440 XXXXXXXXAQDLTLMEQVRTIRHHPVGAKTKQDEEHSIQFSQKD----------SENLVP 1291
+D TL + + + + T QF++K+ S+N +
Sbjct: 119 RAAVKVA--KDATLFKNSNNT--NLLTSSTADKRSKWDQFTEKERAGILGHLAVSDNGIV 174
Query: 1290 TD--------------------DELKLQEMQLYTSIDVRSGRQTEXXXXXXXXXXXXXAN 1171
+D +E++L E Q S+ VRS RQTE +
Sbjct: 175 SDKITASASNKESIGDLESEKQEEVELLEEQPSVSLAVRSTRQTERKARRAKGLEKTASG 234
Query: 1170 VFFGNPRTSRRKKRVALHEVDYSDPXXXXXXXXXXXXXXXXXXXXEFSEGIQELLKLENL 991
+ +S +KKR+ EVD++DP E S GIQ+LLKLE L
Sbjct: 235 IPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVREEHELSAGIQDLLKLERL 294
Query: 990 HRELAERCGVQPTFVQWAEAAGVDQKTLRKCINYGVLCKEKMVKSNIRLVISIAKNYQGA 811
EL ER G QPTF QWA AAGVDQK+LR+ I++G LCK+KM+KSNIRLVISIAKNYQGA
Sbjct: 295 QTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRLVISIAKNYQGA 354
Query: 810 GMNLQDLVQEGCRGLVKGAEKFDASKGFRFSTYAHWWIKQAVQKSLSEQSRTIRLPSHMV 631
GMNLQDLVQEGCRGLV+GAEKFDA+KGF+FSTYAHWWIKQAV+KSLS+QSR IRLP HMV
Sbjct: 355 GMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMV 414
Query: 630 EATYRVREARKQLYCEYGRHPDNEEIAEATGLSMKRLTAVLLTPRPPRSLDQKIGINQNL 451
EATYRV+EARKQLY E G+HP NEEIAEATGLSMKRL AVLL+P+PPRSLDQKIG+NQNL
Sbjct: 415 EATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNL 474
Query: 450 KPLEVITCPGAETTEDLLNKQFMQQDLERVLDSLNSRENQVIRWRFGLKDGRMRTLQEIG 271
KP EVI P A T+ED+L K+FM+QDL++VLDSL +RE QVIRWRFG++DGRM+TLQEIG
Sbjct: 475 KPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIG 534
Query: 270 ELMGVSRERIRQIETCAFRKLKNKKRTKILQQYLVS 163
E+MGVSRER+RQIE+ AFRKLKNKKR LQQYLV+
Sbjct: 535 EMMGVSRERVRQIESSAFRKLKNKKRNNHLQQYLVA 570
>ref|XP_004229543.1| PREDICTED: RNA polymerase sigma factor sigB-like [Solanum
lycopersicum]
Length = 613
Score = 520 bits (1340), Expect = e-145
Identities = 287/520 (55%), Positives = 349/520 (67%), Gaps = 29/520 (5%)
Frame = -2
Query: 1641 VVDVEKLGLTSLEAHTNSVAADRLLSYIGPIGPPTKPNF--EATLATE----ALLTSEEX 1480
V ++KL L S EA+ +SVA DR +Y G +GPP + N E +LA+E A +E
Sbjct: 92 VPGIQKLKLPSFEANPDSVAPDRPWTYTGAVGPPAEANTKPEDSLASEEAIVAAAAAEAV 151
Query: 1479 XXXXXXXXXXXXXXXXXXXXXAQDLT-----LMEQVRTIRHHPV---------------- 1363
+D + + RT V
Sbjct: 152 ALAKAALKGAQDAVMLVGYNNLKDSDNVGRGTLSEARTAPFESVHLAQPGETRGVGVCAE 211
Query: 1362 --GAKTKQDEEHSIQFSQKDSENLVPTDDELKLQEMQLYTSIDVRSGRQTEXXXXXXXXX 1189
G++ K + + DS++L P+ +EL++ + QL I V+S RQTE
Sbjct: 212 LNGSEMKWTGSSLFRDTLTDSDDLEPSHEELEILQSQLSNVIAVKSNRQTERKARRAKAV 271
Query: 1188 XXXXANVFFGNPRTSRRKKRVALHEVDYSDPXXXXXXXXXXXXXXXXXXXXEFSEGIQEL 1009
ANV ++ RKKR ++ +VDYSDP E S GIQ+L
Sbjct: 272 ERAAANVVSVKSGSTSRKKRASVQDVDYSDPLRYLRGTTCSSRLLTASEEQELSRGIQDL 331
Query: 1008 LKLENLHRELAERCGVQPTFVQWAEAAGVDQKTLRKCINYGVLCKEKMVKSNIRLVISIA 829
LKLE L EL ERCG QPTF QWA AAGVDQ TLRK +NYG+LCK+KM+KSN+RLVISIA
Sbjct: 332 LKLERLQVELTERCGGQPTFTQWAAAAGVDQMTLRKRLNYGILCKDKMIKSNVRLVISIA 391
Query: 828 KNYQGAGMNLQDLVQEGCRGLVKGAEKFDASKGFRFSTYAHWWIKQAVQKSLSEQSRTIR 649
KNYQG GMNLQDLVQEGCRGLV+GAEKFDA+KGF+FSTYAHWWIKQAV+KSLS+QSRTIR
Sbjct: 392 KNYQGVGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRTIR 451
Query: 648 LPSHMVEATYRVREARKQLYCEYGRHPDNEEIAEATGLSMKRLTAVLLTPRPPRSLDQKI 469
LP HMVEATYRV+EARKQL E GRHP++ E+AEATGLSMKRL AV+LTP+ PRSLDQK+
Sbjct: 452 LPFHMVEATYRVKEARKQLLTENGRHPNDAEVAEATGLSMKRLAAVMLTPKAPRSLDQKV 511
Query: 468 GINQNLKPLEVITCPGAETTEDLLNKQFMQQDLERVLDSLNSRENQVIRWRFGLKDGRMR 289
G N++LKP EV+ P AET+E++L KQFM+QDLE+VLD+LN RE QV+RWRFGL+DGRM+
Sbjct: 512 GFNESLKPSEVLADPDAETSEEILTKQFMRQDLEKVLDTLNPREKQVVRWRFGLEDGRMK 571
Query: 288 TLQEIGELMGVSRERIRQIETCAFRKLKNKKRTKILQQYL 169
TLQEIGELMGVSRERIRQIE+CAFRKLKNKKRTK LQQY+
Sbjct: 572 TLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKFLQQYI 611
>dbj|BAC43527.1| putative plastid RNA polymerase sigma-subunit SIG1 [Arabidopsis
thaliana]
Length = 572
Score = 520 bits (1339), Expect = e-145
Identities = 298/579 (51%), Positives = 368/579 (63%), Gaps = 33/579 (5%)
Frame = -2
Query: 1800 CLLPQFKCSPDTLSTHYRTQTNSLKVREPVCSRARCILXXXXXXXXXXXXXXTVVDVEKL 1621
CLLPQFKC PD+ S H+RT + P ++ +++DV KL
Sbjct: 4 CLLPQFKCPPDSFSIHFRTSFCA-----PKHNKGSVFFQPQCAVSTSPALLTSMLDVAKL 58
Query: 1620 GLTSLEAHTNSVAADRLLSYIGPIGPPTKPNFEATLATEALLTSEEXXXXXXXXXXXXXX 1441
L S + ++S+ +DR +Y P GP T+ + LA+E LLTS+E
Sbjct: 59 RLPSFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALASETLLTSDEAVVVAAAAEAVALA 118
Query: 1440 XXXXXXXXAQDLTLMEQ---VRTIRHHPVGAKTKQDEEHSIQFSQKD----------SEN 1300
+D TL + + ++K D QF++K+ S+N
Sbjct: 119 RAAVKVA--KDATLFKNSNYTNLLTSSTADKRSKWD-----QFTEKERAGILGHLAVSDN 171
Query: 1299 LVPTD--------------------DELKLQEMQLYTSIDVRSGRQTEXXXXXXXXXXXX 1180
+ +D +E++L E Q + VRS RQTE
Sbjct: 172 GIVSDKITASASNKESIGDLESEKQEEVELLEEQPSVGLAVRSTRQTERKARRAKGLEKT 231
Query: 1179 XANVFFGNPRTSRRKKRVALHEVDYSDPXXXXXXXXXXXXXXXXXXXXEFSEGIQELLKL 1000
+ + +S +KKR+ EVD++DP E S GIQ+LLKL
Sbjct: 232 ASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVREEHELSAGIQDLLKL 291
Query: 999 ENLHRELAERCGVQPTFVQWAEAAGVDQKTLRKCINYGVLCKEKMVKSNIRLVISIAKNY 820
E L EL ER G QPTF QWA AAGVDQK+LR+ I++G LCK+KM+KSNIRLVISIAKNY
Sbjct: 292 ERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRLVISIAKNY 351
Query: 819 QGAGMNLQDLVQEGCRGLVKGAEKFDASKGFRFSTYAHWWIKQAVQKSLSEQSRTIRLPS 640
QGAGMNLQDLVQEGCRGLV+GAEKFDA+KGF+FSTYAHWWIKQAV+KSLS+QSR IRLP
Sbjct: 352 QGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPF 411
Query: 639 HMVEATYRVREARKQLYCEYGRHPDNEEIAEATGLSMKRLTAVLLTPRPPRSLDQKIGIN 460
HMVEATYRV+EARKQLY E G+HP NEEIAEATGLSMKRL AVLL+P+PPRSLDQKIG+N
Sbjct: 412 HMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMN 471
Query: 459 QNLKPLEVITCPGAETTEDLLNKQFMQQDLERVLDSLNSRENQVIRWRFGLKDGRMRTLQ 280
QNLKP EVI P A T ED+L K+FM+QDL++VLDSL +RE QVIRWRFG++DGRM+TLQ
Sbjct: 472 QNLKPSEVIADPEAVTPEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQ 531
Query: 279 EIGELMGVSRERIRQIETCAFRKLKNKKRTKILQQYLVS 163
EIGE+MGVSRER+RQIE+ AFRKLKNKKR LQQYLV+
Sbjct: 532 EIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQYLVA 570