BLASTX nr result
ID: Akebia22_contig00003220
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Akebia22_contig00003220
(279 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AHB38644.1| RNA polymerase beta'' subunit (chloroplast) [Trit... 60 4e-07
gb|EMT11300.1| DNA-directed RNA polymerase subunit beta' [Aegilo... 60 4e-07
ref|YP_007476341.1| RpoC2 (chloroplast) [Trithuria inconspicua] ... 60 4e-07
gb|AHE41666.1| RNA polymerase beta' subunit, partial (chloroplas... 59 5e-07
ref|YP_008578163.1| RNA polymerase beta'' subunit (chloroplast) ... 59 5e-07
gb|AEZ49469.1| RNA polymerase beta'' subunit [Albuca kirkii] 59 5e-07
gb|AEZ49468.1| RNA polymerase beta'' subunit [Agapanthus praecox] 59 5e-07
gb|AEX94823.1| RNA polymerase beta' subunit (chloroplast) [Drimi... 59 5e-07
gb|AEP25234.1| RNA polymerase C2 [Triphyophyllum peltatum] 59 5e-07
gb|AFM54211.1| RpoC2 (chloroplast) [Zamia furfuracea] 59 9e-07
gb|ABV65744.1| RNA polymerase beta'' subunit, partial (chloropla... 58 1e-06
sp|Q9THV5.1|RPOC2_SINAL RecName: Full=DNA-directed RNA polymeras... 57 3e-06
ref|XP_004244911.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 56 6e-06
ref|YP_007374789.1| DNA-directed RNA polymerase subunit beta'' (... 55 8e-06
ref|YP_005352937.1| rpoC2 gene product (chloroplast) [Mankyua ch... 55 8e-06
>gb|AHB38644.1| RNA polymerase beta'' subunit (chloroplast) [Trithuria filamentosa]
Length = 1371
Score = 59.7 bits (143), Expect = 4e-07
Identities = 28/39 (71%), Positives = 32/39 (82%)
Frame = -1
Query: 279 QGQVISLPIQINLCEGLSLTEYIISCFGTCKGVDKTFLK 163
QGQ+I LPIQ NLCEGLSLTEYIISC+G KGV T ++
Sbjct: 158 QGQMIDLPIQSNLCEGLSLTEYIISCYGARKGVVDTAIR 196
>gb|EMT11300.1| DNA-directed RNA polymerase subunit beta' [Aegilops tauschii]
Length = 371
Score = 59.7 bits (143), Expect = 4e-07
Identities = 31/44 (70%), Positives = 35/44 (79%)
Frame = -1
Query: 279 QGQVISLPIQINLCEGLSLTEYIISCFGTCKGVDKTFLKQVSYA 148
QGQ+I LPIQ NLCEGLSLTEYIISC+G KGV T + Q +YA
Sbjct: 229 QGQMIDLPIQNNLCEGLSLTEYIISCYGARKGVVDTDV-QTAYA 271
>ref|YP_007476341.1| RpoC2 (chloroplast) [Trithuria inconspicua]
gi|449713831|emb|CCJ32507.1| RpoC2 (chloroplast)
[Trithuria inconspicua]
Length = 1371
Score = 59.7 bits (143), Expect = 4e-07
Identities = 28/39 (71%), Positives = 32/39 (82%)
Frame = -1
Query: 279 QGQVISLPIQINLCEGLSLTEYIISCFGTCKGVDKTFLK 163
QGQ+I LPIQ NLCEGLSLTEYIISC+G KGV T ++
Sbjct: 158 QGQMIDLPIQSNLCEGLSLTEYIISCYGARKGVVDTAIR 196
>gb|AHE41666.1| RNA polymerase beta' subunit, partial (chloroplast) [Rhodoleia
championii]
Length = 1375
Score = 59.3 bits (142), Expect = 5e-07
Identities = 28/39 (71%), Positives = 32/39 (82%)
Frame = -1
Query: 279 QGQVISLPIQINLCEGLSLTEYIISCFGTCKGVDKTFLK 163
QGQ+I LPIQ NLCEGLSLTEYIISC+G KGV T ++
Sbjct: 147 QGQMIDLPIQSNLCEGLSLTEYIISCYGARKGVVDTAVR 185
>ref|YP_008578163.1| RNA polymerase beta'' subunit (chloroplast) [Stockwellia
quadrifida] gi|442569411|gb|AGC59572.1| RNA polymerase
beta'' subunit (chloroplast) [Stockwellia quadrifida]
Length = 1392
Score = 59.3 bits (142), Expect = 5e-07
Identities = 28/39 (71%), Positives = 32/39 (82%)
Frame = -1
Query: 279 QGQVISLPIQINLCEGLSLTEYIISCFGTCKGVDKTFLK 163
QGQ+I LPIQ NLCEGLSLTEYIISC+G KGV T ++
Sbjct: 161 QGQMIDLPIQSNLCEGLSLTEYIISCYGARKGVVDTAVR 199
>gb|AEZ49469.1| RNA polymerase beta'' subunit [Albuca kirkii]
Length = 1386
Score = 59.3 bits (142), Expect = 5e-07
Identities = 28/39 (71%), Positives = 32/39 (82%)
Frame = -1
Query: 279 QGQVISLPIQINLCEGLSLTEYIISCFGTCKGVDKTFLK 163
QGQ+I LPIQ NLCEGLSLTEYIISC+G KGV T ++
Sbjct: 161 QGQMIDLPIQSNLCEGLSLTEYIISCYGARKGVVDTAVR 199
>gb|AEZ49468.1| RNA polymerase beta'' subunit [Agapanthus praecox]
Length = 1370
Score = 59.3 bits (142), Expect = 5e-07
Identities = 28/39 (71%), Positives = 32/39 (82%)
Frame = -1
Query: 279 QGQVISLPIQINLCEGLSLTEYIISCFGTCKGVDKTFLK 163
QGQ+I LPIQ NLCEGLSLTEYIISC+G KGV T ++
Sbjct: 161 QGQMIDLPIQSNLCEGLSLTEYIISCYGARKGVVDTAVR 199
>gb|AEX94823.1| RNA polymerase beta' subunit (chloroplast) [Drimia altissima]
Length = 1386
Score = 59.3 bits (142), Expect = 5e-07
Identities = 28/39 (71%), Positives = 32/39 (82%)
Frame = -1
Query: 279 QGQVISLPIQINLCEGLSLTEYIISCFGTCKGVDKTFLK 163
QGQ+I LPIQ NLCEGLSLTEYIISC+G KGV T ++
Sbjct: 161 QGQMIDLPIQSNLCEGLSLTEYIISCYGARKGVVDTAVR 199
>gb|AEP25234.1| RNA polymerase C2 [Triphyophyllum peltatum]
Length = 1142
Score = 59.3 bits (142), Expect = 5e-07
Identities = 28/39 (71%), Positives = 32/39 (82%)
Frame = -1
Query: 279 QGQVISLPIQINLCEGLSLTEYIISCFGTCKGVDKTFLK 163
QGQ+I LPIQ NLCEGLSLTEYIISC+G KGV T ++
Sbjct: 161 QGQMIELPIQSNLCEGLSLTEYIISCYGARKGVVDTAVR 199
>gb|AFM54211.1| RpoC2 (chloroplast) [Zamia furfuracea]
Length = 1372
Score = 58.5 bits (140), Expect = 9e-07
Identities = 26/39 (66%), Positives = 31/39 (79%)
Frame = -1
Query: 279 QGQVISLPIQINLCEGLSLTEYIISCFGTCKGVDKTFLK 163
QGQ++ LPIQ N CEGLSLTEYIISC+G KGV T ++
Sbjct: 163 QGQIVDLPIQSNFCEGLSLTEYIISCYGARKGVVDTAIR 201
>gb|ABV65744.1| RNA polymerase beta'' subunit, partial (chloroplast) [Hypericum
kalmianum]
Length = 1289
Score = 58.2 bits (139), Expect = 1e-06
Identities = 28/39 (71%), Positives = 31/39 (79%)
Frame = -1
Query: 279 QGQVISLPIQINLCEGLSLTEYIISCFGTCKGVDKTFLK 163
QGQ+I LPI NLCEGLSLTEYIISC+G KGV T L+
Sbjct: 128 QGQMIDLPIPSNLCEGLSLTEYIISCYGARKGVVDTALR 166
>sp|Q9THV5.1|RPOC2_SINAL RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|5725463|emb|CAB48415.2| RNA polymerase A beta prime
prime subunit [Sinapis alba]
Length = 1384
Score = 56.6 bits (135), Expect = 3e-06
Identities = 28/40 (70%), Positives = 32/40 (80%)
Frame = -1
Query: 279 QGQVISLPIQINLCEGLSLTEYIISCFGTCKGVDKTFLKQ 160
QGQ+I LPIQ NL EGLSLTEYIISC+G KGV T ++Q
Sbjct: 161 QGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRQ 200
>ref|XP_004244911.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase subunit
beta''-like [Solanum lycopersicum]
Length = 1246
Score = 55.8 bits (133), Expect = 6e-06
Identities = 30/44 (68%), Positives = 34/44 (77%)
Frame = -1
Query: 279 QGQVISLPIQINLCEGLSLTEYIISCFGTCKGVDKTFLKQVSYA 148
QGQ+I LPIQ +L +GLSLTEYIISCFG KGV TF+ SYA
Sbjct: 143 QGQMIDLPIQSSLRKGLSLTEYIISCFGARKGVADTFV-PTSYA 185
>ref|YP_007374789.1| DNA-directed RNA polymerase subunit beta'' (chloroplast)
[Ophioglossum californicum] gi|441017918|gb|AGC26702.1|
DNA-directed RNA polymerase subunit beta'' (chloroplast)
[Ophioglossum californicum]
Length = 1412
Score = 55.5 bits (132), Expect = 8e-06
Identities = 27/39 (69%), Positives = 31/39 (79%)
Frame = -1
Query: 279 QGQVISLPIQINLCEGLSLTEYIISCFGTCKGVDKTFLK 163
QGQ+I LPIQ NL EGLSLTEYIISC+G KGV T ++
Sbjct: 157 QGQIIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVR 195
>ref|YP_005352937.1| rpoC2 gene product (chloroplast) [Mankyua chejuensis]
gi|325975833|gb|ADZ47969.1| RNA polymerase beta' subunit
[Mankyua chejuensis]
Length = 1420
Score = 55.5 bits (132), Expect = 8e-06
Identities = 28/39 (71%), Positives = 31/39 (79%)
Frame = -1
Query: 279 QGQVISLPIQINLCEGLSLTEYIISCFGTCKGVDKTFLK 163
QGQVI LPIQ NL EGLSLTEYIISC+G KGV T ++
Sbjct: 157 QGQVIDLPIQGNLREGLSLTEYIISCYGARKGVVDTAIR 195