BLASTX nr result
ID: Akebia22_contig00003220
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Akebia22_contig00003220 (279 letters) Database: ./nr 38,876,450 sequences; 13,856,398,315 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AHB38644.1| RNA polymerase beta'' subunit (chloroplast) [Trit... 60 4e-07 gb|EMT11300.1| DNA-directed RNA polymerase subunit beta' [Aegilo... 60 4e-07 ref|YP_007476341.1| RpoC2 (chloroplast) [Trithuria inconspicua] ... 60 4e-07 gb|AHE41666.1| RNA polymerase beta' subunit, partial (chloroplas... 59 5e-07 ref|YP_008578163.1| RNA polymerase beta'' subunit (chloroplast) ... 59 5e-07 gb|AEZ49469.1| RNA polymerase beta'' subunit [Albuca kirkii] 59 5e-07 gb|AEZ49468.1| RNA polymerase beta'' subunit [Agapanthus praecox] 59 5e-07 gb|AEX94823.1| RNA polymerase beta' subunit (chloroplast) [Drimi... 59 5e-07 gb|AEP25234.1| RNA polymerase C2 [Triphyophyllum peltatum] 59 5e-07 gb|AFM54211.1| RpoC2 (chloroplast) [Zamia furfuracea] 59 9e-07 gb|ABV65744.1| RNA polymerase beta'' subunit, partial (chloropla... 58 1e-06 sp|Q9THV5.1|RPOC2_SINAL RecName: Full=DNA-directed RNA polymeras... 57 3e-06 ref|XP_004244911.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 56 6e-06 ref|YP_007374789.1| DNA-directed RNA polymerase subunit beta'' (... 55 8e-06 ref|YP_005352937.1| rpoC2 gene product (chloroplast) [Mankyua ch... 55 8e-06 >gb|AHB38644.1| RNA polymerase beta'' subunit (chloroplast) [Trithuria filamentosa] Length = 1371 Score = 59.7 bits (143), Expect = 4e-07 Identities = 28/39 (71%), Positives = 32/39 (82%) Frame = -1 Query: 279 QGQVISLPIQINLCEGLSLTEYIISCFGTCKGVDKTFLK 163 QGQ+I LPIQ NLCEGLSLTEYIISC+G KGV T ++ Sbjct: 158 QGQMIDLPIQSNLCEGLSLTEYIISCYGARKGVVDTAIR 196 >gb|EMT11300.1| DNA-directed RNA polymerase subunit beta' [Aegilops tauschii] Length = 371 Score = 59.7 bits (143), Expect = 4e-07 Identities = 31/44 (70%), Positives = 35/44 (79%) Frame = -1 Query: 279 QGQVISLPIQINLCEGLSLTEYIISCFGTCKGVDKTFLKQVSYA 148 QGQ+I LPIQ NLCEGLSLTEYIISC+G KGV T + Q +YA Sbjct: 229 QGQMIDLPIQNNLCEGLSLTEYIISCYGARKGVVDTDV-QTAYA 271 >ref|YP_007476341.1| RpoC2 (chloroplast) [Trithuria inconspicua] gi|449713831|emb|CCJ32507.1| RpoC2 (chloroplast) [Trithuria inconspicua] Length = 1371 Score = 59.7 bits (143), Expect = 4e-07 Identities = 28/39 (71%), Positives = 32/39 (82%) Frame = -1 Query: 279 QGQVISLPIQINLCEGLSLTEYIISCFGTCKGVDKTFLK 163 QGQ+I LPIQ NLCEGLSLTEYIISC+G KGV T ++ Sbjct: 158 QGQMIDLPIQSNLCEGLSLTEYIISCYGARKGVVDTAIR 196 >gb|AHE41666.1| RNA polymerase beta' subunit, partial (chloroplast) [Rhodoleia championii] Length = 1375 Score = 59.3 bits (142), Expect = 5e-07 Identities = 28/39 (71%), Positives = 32/39 (82%) Frame = -1 Query: 279 QGQVISLPIQINLCEGLSLTEYIISCFGTCKGVDKTFLK 163 QGQ+I LPIQ NLCEGLSLTEYIISC+G KGV T ++ Sbjct: 147 QGQMIDLPIQSNLCEGLSLTEYIISCYGARKGVVDTAVR 185 >ref|YP_008578163.1| RNA polymerase beta'' subunit (chloroplast) [Stockwellia quadrifida] gi|442569411|gb|AGC59572.1| RNA polymerase beta'' subunit (chloroplast) [Stockwellia quadrifida] Length = 1392 Score = 59.3 bits (142), Expect = 5e-07 Identities = 28/39 (71%), Positives = 32/39 (82%) Frame = -1 Query: 279 QGQVISLPIQINLCEGLSLTEYIISCFGTCKGVDKTFLK 163 QGQ+I LPIQ NLCEGLSLTEYIISC+G KGV T ++ Sbjct: 161 QGQMIDLPIQSNLCEGLSLTEYIISCYGARKGVVDTAVR 199 >gb|AEZ49469.1| RNA polymerase beta'' subunit [Albuca kirkii] Length = 1386 Score = 59.3 bits (142), Expect = 5e-07 Identities = 28/39 (71%), Positives = 32/39 (82%) Frame = -1 Query: 279 QGQVISLPIQINLCEGLSLTEYIISCFGTCKGVDKTFLK 163 QGQ+I LPIQ NLCEGLSLTEYIISC+G KGV T ++ Sbjct: 161 QGQMIDLPIQSNLCEGLSLTEYIISCYGARKGVVDTAVR 199 >gb|AEZ49468.1| RNA polymerase beta'' subunit [Agapanthus praecox] Length = 1370 Score = 59.3 bits (142), Expect = 5e-07 Identities = 28/39 (71%), Positives = 32/39 (82%) Frame = -1 Query: 279 QGQVISLPIQINLCEGLSLTEYIISCFGTCKGVDKTFLK 163 QGQ+I LPIQ NLCEGLSLTEYIISC+G KGV T ++ Sbjct: 161 QGQMIDLPIQSNLCEGLSLTEYIISCYGARKGVVDTAVR 199 >gb|AEX94823.1| RNA polymerase beta' subunit (chloroplast) [Drimia altissima] Length = 1386 Score = 59.3 bits (142), Expect = 5e-07 Identities = 28/39 (71%), Positives = 32/39 (82%) Frame = -1 Query: 279 QGQVISLPIQINLCEGLSLTEYIISCFGTCKGVDKTFLK 163 QGQ+I LPIQ NLCEGLSLTEYIISC+G KGV T ++ Sbjct: 161 QGQMIDLPIQSNLCEGLSLTEYIISCYGARKGVVDTAVR 199 >gb|AEP25234.1| RNA polymerase C2 [Triphyophyllum peltatum] Length = 1142 Score = 59.3 bits (142), Expect = 5e-07 Identities = 28/39 (71%), Positives = 32/39 (82%) Frame = -1 Query: 279 QGQVISLPIQINLCEGLSLTEYIISCFGTCKGVDKTFLK 163 QGQ+I LPIQ NLCEGLSLTEYIISC+G KGV T ++ Sbjct: 161 QGQMIELPIQSNLCEGLSLTEYIISCYGARKGVVDTAVR 199 >gb|AFM54211.1| RpoC2 (chloroplast) [Zamia furfuracea] Length = 1372 Score = 58.5 bits (140), Expect = 9e-07 Identities = 26/39 (66%), Positives = 31/39 (79%) Frame = -1 Query: 279 QGQVISLPIQINLCEGLSLTEYIISCFGTCKGVDKTFLK 163 QGQ++ LPIQ N CEGLSLTEYIISC+G KGV T ++ Sbjct: 163 QGQIVDLPIQSNFCEGLSLTEYIISCYGARKGVVDTAIR 201 >gb|ABV65744.1| RNA polymerase beta'' subunit, partial (chloroplast) [Hypericum kalmianum] Length = 1289 Score = 58.2 bits (139), Expect = 1e-06 Identities = 28/39 (71%), Positives = 31/39 (79%) Frame = -1 Query: 279 QGQVISLPIQINLCEGLSLTEYIISCFGTCKGVDKTFLK 163 QGQ+I LPI NLCEGLSLTEYIISC+G KGV T L+ Sbjct: 128 QGQMIDLPIPSNLCEGLSLTEYIISCYGARKGVVDTALR 166 >sp|Q9THV5.1|RPOC2_SINAL RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName: Full=PEP; AltName: Full=Plastid-encoded RNA polymerase subunit beta''; Short=RNA polymerase subunit beta'' gi|5725463|emb|CAB48415.2| RNA polymerase A beta prime prime subunit [Sinapis alba] Length = 1384 Score = 56.6 bits (135), Expect = 3e-06 Identities = 28/40 (70%), Positives = 32/40 (80%) Frame = -1 Query: 279 QGQVISLPIQINLCEGLSLTEYIISCFGTCKGVDKTFLKQ 160 QGQ+I LPIQ NL EGLSLTEYIISC+G KGV T ++Q Sbjct: 161 QGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRQ 200 >ref|XP_004244911.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase subunit beta''-like [Solanum lycopersicum] Length = 1246 Score = 55.8 bits (133), Expect = 6e-06 Identities = 30/44 (68%), Positives = 34/44 (77%) Frame = -1 Query: 279 QGQVISLPIQINLCEGLSLTEYIISCFGTCKGVDKTFLKQVSYA 148 QGQ+I LPIQ +L +GLSLTEYIISCFG KGV TF+ SYA Sbjct: 143 QGQMIDLPIQSSLRKGLSLTEYIISCFGARKGVADTFV-PTSYA 185 >ref|YP_007374789.1| DNA-directed RNA polymerase subunit beta'' (chloroplast) [Ophioglossum californicum] gi|441017918|gb|AGC26702.1| DNA-directed RNA polymerase subunit beta'' (chloroplast) [Ophioglossum californicum] Length = 1412 Score = 55.5 bits (132), Expect = 8e-06 Identities = 27/39 (69%), Positives = 31/39 (79%) Frame = -1 Query: 279 QGQVISLPIQINLCEGLSLTEYIISCFGTCKGVDKTFLK 163 QGQ+I LPIQ NL EGLSLTEYIISC+G KGV T ++ Sbjct: 157 QGQIIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVR 195 >ref|YP_005352937.1| rpoC2 gene product (chloroplast) [Mankyua chejuensis] gi|325975833|gb|ADZ47969.1| RNA polymerase beta' subunit [Mankyua chejuensis] Length = 1420 Score = 55.5 bits (132), Expect = 8e-06 Identities = 28/39 (71%), Positives = 31/39 (79%) Frame = -1 Query: 279 QGQVISLPIQINLCEGLSLTEYIISCFGTCKGVDKTFLK 163 QGQVI LPIQ NL EGLSLTEYIISC+G KGV T ++ Sbjct: 157 QGQVIDLPIQGNLREGLSLTEYIISCYGARKGVVDTAIR 195