BLASTX nr result

ID: Akebia22_contig00003220 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia22_contig00003220
         (279 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AHB38644.1| RNA polymerase beta'' subunit (chloroplast) [Trit...    60   4e-07
gb|EMT11300.1| DNA-directed RNA polymerase subunit beta' [Aegilo...    60   4e-07
ref|YP_007476341.1| RpoC2 (chloroplast) [Trithuria inconspicua] ...    60   4e-07
gb|AHE41666.1| RNA polymerase beta' subunit, partial (chloroplas...    59   5e-07
ref|YP_008578163.1| RNA polymerase beta'' subunit (chloroplast) ...    59   5e-07
gb|AEZ49469.1| RNA polymerase beta'' subunit [Albuca kirkii]           59   5e-07
gb|AEZ49468.1| RNA polymerase beta'' subunit [Agapanthus praecox]      59   5e-07
gb|AEX94823.1| RNA polymerase beta' subunit (chloroplast) [Drimi...    59   5e-07
gb|AEP25234.1| RNA polymerase C2 [Triphyophyllum peltatum]             59   5e-07
gb|AFM54211.1| RpoC2 (chloroplast) [Zamia furfuracea]                  59   9e-07
gb|ABV65744.1| RNA polymerase beta'' subunit, partial (chloropla...    58   1e-06
sp|Q9THV5.1|RPOC2_SINAL RecName: Full=DNA-directed RNA polymeras...    57   3e-06
ref|XP_004244911.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...    56   6e-06
ref|YP_007374789.1| DNA-directed RNA polymerase subunit beta'' (...    55   8e-06
ref|YP_005352937.1| rpoC2 gene product (chloroplast) [Mankyua ch...    55   8e-06

>gb|AHB38644.1| RNA polymerase beta'' subunit (chloroplast) [Trithuria filamentosa]
          Length = 1371

 Score = 59.7 bits (143), Expect = 4e-07
 Identities = 28/39 (71%), Positives = 32/39 (82%)
 Frame = -1

Query: 279 QGQVISLPIQINLCEGLSLTEYIISCFGTCKGVDKTFLK 163
           QGQ+I LPIQ NLCEGLSLTEYIISC+G  KGV  T ++
Sbjct: 158 QGQMIDLPIQSNLCEGLSLTEYIISCYGARKGVVDTAIR 196


>gb|EMT11300.1| DNA-directed RNA polymerase subunit beta' [Aegilops tauschii]
          Length = 371

 Score = 59.7 bits (143), Expect = 4e-07
 Identities = 31/44 (70%), Positives = 35/44 (79%)
 Frame = -1

Query: 279 QGQVISLPIQINLCEGLSLTEYIISCFGTCKGVDKTFLKQVSYA 148
           QGQ+I LPIQ NLCEGLSLTEYIISC+G  KGV  T + Q +YA
Sbjct: 229 QGQMIDLPIQNNLCEGLSLTEYIISCYGARKGVVDTDV-QTAYA 271


>ref|YP_007476341.1| RpoC2 (chloroplast) [Trithuria inconspicua]
           gi|449713831|emb|CCJ32507.1| RpoC2 (chloroplast)
           [Trithuria inconspicua]
          Length = 1371

 Score = 59.7 bits (143), Expect = 4e-07
 Identities = 28/39 (71%), Positives = 32/39 (82%)
 Frame = -1

Query: 279 QGQVISLPIQINLCEGLSLTEYIISCFGTCKGVDKTFLK 163
           QGQ+I LPIQ NLCEGLSLTEYIISC+G  KGV  T ++
Sbjct: 158 QGQMIDLPIQSNLCEGLSLTEYIISCYGARKGVVDTAIR 196


>gb|AHE41666.1| RNA polymerase beta' subunit, partial (chloroplast) [Rhodoleia
           championii]
          Length = 1375

 Score = 59.3 bits (142), Expect = 5e-07
 Identities = 28/39 (71%), Positives = 32/39 (82%)
 Frame = -1

Query: 279 QGQVISLPIQINLCEGLSLTEYIISCFGTCKGVDKTFLK 163
           QGQ+I LPIQ NLCEGLSLTEYIISC+G  KGV  T ++
Sbjct: 147 QGQMIDLPIQSNLCEGLSLTEYIISCYGARKGVVDTAVR 185


>ref|YP_008578163.1| RNA polymerase beta'' subunit (chloroplast) [Stockwellia
           quadrifida] gi|442569411|gb|AGC59572.1| RNA polymerase
           beta'' subunit (chloroplast) [Stockwellia quadrifida]
          Length = 1392

 Score = 59.3 bits (142), Expect = 5e-07
 Identities = 28/39 (71%), Positives = 32/39 (82%)
 Frame = -1

Query: 279 QGQVISLPIQINLCEGLSLTEYIISCFGTCKGVDKTFLK 163
           QGQ+I LPIQ NLCEGLSLTEYIISC+G  KGV  T ++
Sbjct: 161 QGQMIDLPIQSNLCEGLSLTEYIISCYGARKGVVDTAVR 199


>gb|AEZ49469.1| RNA polymerase beta'' subunit [Albuca kirkii]
          Length = 1386

 Score = 59.3 bits (142), Expect = 5e-07
 Identities = 28/39 (71%), Positives = 32/39 (82%)
 Frame = -1

Query: 279 QGQVISLPIQINLCEGLSLTEYIISCFGTCKGVDKTFLK 163
           QGQ+I LPIQ NLCEGLSLTEYIISC+G  KGV  T ++
Sbjct: 161 QGQMIDLPIQSNLCEGLSLTEYIISCYGARKGVVDTAVR 199


>gb|AEZ49468.1| RNA polymerase beta'' subunit [Agapanthus praecox]
          Length = 1370

 Score = 59.3 bits (142), Expect = 5e-07
 Identities = 28/39 (71%), Positives = 32/39 (82%)
 Frame = -1

Query: 279 QGQVISLPIQINLCEGLSLTEYIISCFGTCKGVDKTFLK 163
           QGQ+I LPIQ NLCEGLSLTEYIISC+G  KGV  T ++
Sbjct: 161 QGQMIDLPIQSNLCEGLSLTEYIISCYGARKGVVDTAVR 199


>gb|AEX94823.1| RNA polymerase beta' subunit (chloroplast) [Drimia altissima]
          Length = 1386

 Score = 59.3 bits (142), Expect = 5e-07
 Identities = 28/39 (71%), Positives = 32/39 (82%)
 Frame = -1

Query: 279 QGQVISLPIQINLCEGLSLTEYIISCFGTCKGVDKTFLK 163
           QGQ+I LPIQ NLCEGLSLTEYIISC+G  KGV  T ++
Sbjct: 161 QGQMIDLPIQSNLCEGLSLTEYIISCYGARKGVVDTAVR 199


>gb|AEP25234.1| RNA polymerase C2 [Triphyophyllum peltatum]
          Length = 1142

 Score = 59.3 bits (142), Expect = 5e-07
 Identities = 28/39 (71%), Positives = 32/39 (82%)
 Frame = -1

Query: 279 QGQVISLPIQINLCEGLSLTEYIISCFGTCKGVDKTFLK 163
           QGQ+I LPIQ NLCEGLSLTEYIISC+G  KGV  T ++
Sbjct: 161 QGQMIELPIQSNLCEGLSLTEYIISCYGARKGVVDTAVR 199


>gb|AFM54211.1| RpoC2 (chloroplast) [Zamia furfuracea]
          Length = 1372

 Score = 58.5 bits (140), Expect = 9e-07
 Identities = 26/39 (66%), Positives = 31/39 (79%)
 Frame = -1

Query: 279 QGQVISLPIQINLCEGLSLTEYIISCFGTCKGVDKTFLK 163
           QGQ++ LPIQ N CEGLSLTEYIISC+G  KGV  T ++
Sbjct: 163 QGQIVDLPIQSNFCEGLSLTEYIISCYGARKGVVDTAIR 201


>gb|ABV65744.1| RNA polymerase beta'' subunit, partial (chloroplast) [Hypericum
           kalmianum]
          Length = 1289

 Score = 58.2 bits (139), Expect = 1e-06
 Identities = 28/39 (71%), Positives = 31/39 (79%)
 Frame = -1

Query: 279 QGQVISLPIQINLCEGLSLTEYIISCFGTCKGVDKTFLK 163
           QGQ+I LPI  NLCEGLSLTEYIISC+G  KGV  T L+
Sbjct: 128 QGQMIDLPIPSNLCEGLSLTEYIISCYGARKGVVDTALR 166


>sp|Q9THV5.1|RPOC2_SINAL RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
           Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
           subunit beta''; Short=RNA polymerase subunit beta''
           gi|5725463|emb|CAB48415.2| RNA polymerase A beta prime
           prime subunit [Sinapis alba]
          Length = 1384

 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 28/40 (70%), Positives = 32/40 (80%)
 Frame = -1

Query: 279 QGQVISLPIQINLCEGLSLTEYIISCFGTCKGVDKTFLKQ 160
           QGQ+I LPIQ NL EGLSLTEYIISC+G  KGV  T ++Q
Sbjct: 161 QGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRQ 200


>ref|XP_004244911.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase subunit
           beta''-like [Solanum lycopersicum]
          Length = 1246

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 30/44 (68%), Positives = 34/44 (77%)
 Frame = -1

Query: 279 QGQVISLPIQINLCEGLSLTEYIISCFGTCKGVDKTFLKQVSYA 148
           QGQ+I LPIQ +L +GLSLTEYIISCFG  KGV  TF+   SYA
Sbjct: 143 QGQMIDLPIQSSLRKGLSLTEYIISCFGARKGVADTFV-PTSYA 185


>ref|YP_007374789.1| DNA-directed RNA polymerase subunit beta'' (chloroplast)
           [Ophioglossum californicum] gi|441017918|gb|AGC26702.1|
           DNA-directed RNA polymerase subunit beta'' (chloroplast)
           [Ophioglossum californicum]
          Length = 1412

 Score = 55.5 bits (132), Expect = 8e-06
 Identities = 27/39 (69%), Positives = 31/39 (79%)
 Frame = -1

Query: 279 QGQVISLPIQINLCEGLSLTEYIISCFGTCKGVDKTFLK 163
           QGQ+I LPIQ NL EGLSLTEYIISC+G  KGV  T ++
Sbjct: 157 QGQIIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVR 195


>ref|YP_005352937.1| rpoC2 gene product (chloroplast) [Mankyua chejuensis]
           gi|325975833|gb|ADZ47969.1| RNA polymerase beta' subunit
           [Mankyua chejuensis]
          Length = 1420

 Score = 55.5 bits (132), Expect = 8e-06
 Identities = 28/39 (71%), Positives = 31/39 (79%)
 Frame = -1

Query: 279 QGQVISLPIQINLCEGLSLTEYIISCFGTCKGVDKTFLK 163
           QGQVI LPIQ NL EGLSLTEYIISC+G  KGV  T ++
Sbjct: 157 QGQVIDLPIQGNLREGLSLTEYIISCYGARKGVVDTAIR 195


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