BLASTX nr result
ID: Akebia22_contig00001210
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Akebia22_contig00001210
(6769 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAR13298.1| gag-pol polyprotein [Phaseolus vulgaris] 145 2e-81
emb|CAN73567.1| hypothetical protein VITISV_003451 [Vitis vinifera] 140 4e-75
emb|CAN66637.1| hypothetical protein VITISV_011340 [Vitis vinifera] 139 1e-73
emb|CAD40198.2| OSJNBb0043H09.7 [Oryza sativa Japonica Group] 143 4e-73
gb|AAR01716.1| putative Gag and Pol polyprotein [Oryza sativa Ja... 142 7e-73
gb|ABA96419.1| retrotransposon protein, putative, Ty1-copia subc... 140 1e-72
gb|ABF96702.1| retrotransposon protein, putative, Ty1-copia subc... 140 1e-72
gb|AAU44026.2| putative polyprotein [Oryza sativa Japonica Group] 140 1e-72
gb|AAP20858.1| retrotransposon protein, putative, Ty1-copia sub-... 140 1e-72
gb|AAR01682.1| putative gag and pol protein [Oryza sativa Japoni... 140 2e-72
gb|AAT44162.1| putative polyprotein [Oryza sativa Japonica Group] 140 2e-72
emb|CAE02325.2| OSJNBb0112E13.7 [Oryza sativa Japonica Group] 141 3e-72
gb|AAT58846.1| putative polyprotein [Oryza sativa Japonica Group] 140 3e-72
gb|ABF96953.1| retrotransposon protein, putative, Ty1-copia subc... 140 3e-72
gb|AAS01934.1| putative Integrase core domain containing protein... 140 3e-72
emb|CAD40744.2| OSJNBa0072D21.4 [Oryza sativa Japonica Group] 140 4e-72
gb|ABF94929.1| retrotransposon protein, putative, Ty1-copia subc... 140 4e-72
emb|CAE03764.2| OSJNBa0013K16.13 [Oryza sativa Japonica Group] 139 5e-72
emb|CAE01299.2| OSJNBa0020P07.16 [Oryza sativa Japonica Group] 140 8e-72
gb|AAN61480.1| Putative polyprotein from transposon TNT [Oryza s... 142 1e-71
>gb|AAR13298.1| gag-pol polyprotein [Phaseolus vulgaris]
Length = 1290
Score = 145 bits (367), Expect(4) = 2e-81
Identities = 80/182 (43%), Positives = 114/182 (62%)
Frame = +2
Query: 2717 FRSEHEVKKNRSDSVSLQKEYVRIIGSLMYLINNTHPDIIFVAVVLSRFTSNLSRDH*IA 2896
+ + ++KKNR +S+S Q +Y +IIGSL++L++ + PDI + LSR T S+DH A
Sbjct: 1040 YDANSKLKKNRGESIS-QTQYAQIIGSLLHLMSFSRPDIAYAVGRLSRCTQCPSQDHWEA 1098
Query: 2897 LVRIFRYLRGTIDMGFHFSGSSNVLEVYSNAN*ISKFDESKSTSSYIFILGGGIIPWKSS 3076
L R+ +YLRGT+D +SG VLE YS+AN IS DE+KSTS Y+F LGGG + W+S+
Sbjct: 1099 LARLMKYLRGTMDYAIEYSGFPAVLEGYSDANWISDSDETKSTSGYVFTLGGGAVTWRSA 1158
Query: 3077 KQTCMAKSTMELEFITLKLTGTEAXXXXXXXXXXXXREKLMPLVFIYYDS*DVIVKAKNH 3256
+QT +A+STME EF+ L++ G+EA K P V ++ D I AKN
Sbjct: 1159 RQTIIARSTMESEFVALEMAGSEAEWLKNFLANIPLGMKPTPSVSMHCDCQSAIAIAKNK 1218
Query: 3257 IY 3262
Y
Sbjct: 1219 SY 1220
Score = 86.7 bits (213), Expect(4) = 2e-81
Identities = 41/87 (47%), Positives = 56/87 (64%)
Frame = +1
Query: 2245 NISDKVINWTT*ENIHMEQSDRCAVLGQENKVCRLVKFLYGLK*ASK*WHEKLDYVVKSS 2424
++ +N E I+M Q + C VLGQ+ KVC+L+K LYGLK A K WHEKLD V+
Sbjct: 880 DVKTTFLNGELEEEIYMTQPEGCVVLGQKEKVCKLLKSLYGLKQAPKQWHEKLDNVLLCE 939
Query: 2425 GYIFNDCDRCVYNKFNGKTGVIICLFI 2505
G+ ND D+CVY++ VIICL++
Sbjct: 940 GFSTNDADKCVYSRSENGEYVIICLYV 966
Score = 78.6 bits (192), Expect(4) = 2e-81
Identities = 41/80 (51%), Positives = 53/80 (66%)
Frame = +3
Query: 2505 MLILRTNLKIVEETKSFPNSKFEKKDL*EVDVMLGIKIVRKDEGFVLSQSHYVEKVLKKF 2684
MLI T IV +TK F SKFE KD+ E V+LG+KI+RK + +LSQ Y EK+LKKF
Sbjct: 969 MLIFGTCNDIVFKTKLFLGSKFEMKDMGEASVILGVKIIRKGDSILLSQEKYTEKLLKKF 1028
Query: 2685 RYFESISILIPLDPNMKLKR 2744
Y++ S+ P D N KLK+
Sbjct: 1029 GYYDFKSVSTPYDANSKLKK 1048
Score = 65.9 bits (159), Expect(4) = 2e-81
Identities = 32/60 (53%), Positives = 44/60 (73%)
Frame = +1
Query: 3268 YNGKCRHIHLRHNVVQQLLRGGVIVIDFVRSESNLTDLLTNQLTKGLISKSSRRIRLMPM 3447
YNGK RHI LRHN+V+QLL+ G I ID+V+SE +L D LT L + +I ++SR + L P+
Sbjct: 1220 YNGKNRHIQLRHNLVKQLLKSGTISIDYVKSERDLADPLTKPLGRKMILETSRGMGLKPL 1279
>emb|CAN73567.1| hypothetical protein VITISV_003451 [Vitis vinifera]
Length = 1277
Score = 140 bits (353), Expect(4) = 4e-75
Identities = 80/176 (45%), Positives = 107/176 (60%)
Frame = +2
Query: 2735 VKKNRSDSVSLQKEYVRIIGSLMYLINNTHPDIIFVAVVLSRFTSNLSRDH*IALVRIFR 2914
+ KN+ +SVS Q EY RIIGSLMYL++ T PDI + LSR+TSN H ++R+ +
Sbjct: 1042 LSKNKGESVS-QVEYSRIIGSLMYLMSCTRPDIAYAVSKLSRYTSNPGAKHWQGIIRVLK 1100
Query: 2915 YLRGTIDMGFHFSGSSNVLEVYSNAN*ISKFDESKSTSSYIFILGGGIIPWKSSKQTCMA 3094
YLR T D G H++ VLE YS+AN IS +SKS S Y+F LGG + WKSSKQ +A
Sbjct: 1101 YLRFTRDYGLHYTRYPAVLEGYSDANWISNVKDSKSHSGYVFTLGGAAVSWKSSKQXVIA 1160
Query: 3095 KSTMELEFITLKLTGTEAXXXXXXXXXXXXREKLMPLVFIYYDS*DVIVKAKNHIY 3262
+STME EFI L G EA K +P + I+ DS I +A++++Y
Sbjct: 1161 RSTMESEFIALDKCGEEAEWLRHFLEDIPRWSKPVPPICIHCDSQSAIGRAQSNMY 1216
Score = 84.0 bits (206), Expect(4) = 4e-75
Identities = 41/87 (47%), Positives = 55/87 (63%)
Frame = +1
Query: 2245 NISDKVINWTT*ENIHMEQSDRCAVLGQENKVCRLVKFLYGLK*ASK*WHEKLDYVVKSS 2424
++ +N E I+MEQ + + GQE KVC+LVK LYGLK A K WHEK D V+ S
Sbjct: 876 DVKTAFLNGDLDEEIYMEQPEGFSAPGQEKKVCKLVKSLYGLKQAPKQWHEKFDNVMLSH 935
Query: 2425 GYIFNDCDRCVYNKFNGKTGVIICLFI 2505
G+ N+CD+CVY K VI+CL++
Sbjct: 936 GFKINECDKCVYVKDTEHGYVIVCLYV 962
Score = 67.0 bits (162), Expect(4) = 4e-75
Identities = 31/61 (50%), Positives = 43/61 (70%)
Frame = +1
Query: 3265 IYNGKCRHIHLRHNVVQQLLRGGVIVIDFVRSESNLTDLLTNQLTKGLISKSSRRIRLMP 3444
+YNGK RHI RHN ++QLL GVI +D+V+S+ N+ D LT L + L+ KSSR + L P
Sbjct: 1215 MYNGKSRHIXRRHNTIRQLLSTGVISVDYVKSKDNIADPLTKGLNRELVEKSSRGMXLKP 1274
Query: 3445 M 3447
+
Sbjct: 1275 I 1275
Score = 63.9 bits (154), Expect(4) = 4e-75
Identities = 34/80 (42%), Positives = 51/80 (63%)
Frame = +3
Query: 2505 MLILRTNLKIVEETKSFPNSKFEKKDL*EVDVMLGIKIVRKDEGFVLSQSHYVEKVLKKF 2684
MLI+ ++ K++ TK+ NS+F+ KD+ DV+LGIKI R + +LSQSHYV+K+L KF
Sbjct: 965 MLIVGSDDKMITSTKNMLNSRFDMKDMGLADVILGIKIKRTSBELILSQSHYVDKILGKF 1024
Query: 2685 RYFESISILIPLDPNMKLKR 2744
S P+D + L +
Sbjct: 1025 DKDNSGVARTPVDVTLHLSK 1044
>emb|CAN66637.1| hypothetical protein VITISV_011340 [Vitis vinifera]
Length = 1316
Score = 139 bits (351), Expect(4) = 1e-73
Identities = 80/176 (45%), Positives = 107/176 (60%)
Frame = +2
Query: 2735 VKKNRSDSVSLQKEYVRIIGSLMYLINNTHPDIIFVAVVLSRFTSNLSRDH*IALVRIFR 2914
+ KN+ +SVS Q EY RIIGSLMYL++ T PDI + LSR+TSN H ++R+ +
Sbjct: 1081 LSKNKGESVS-QVEYSRIIGSLMYLMSCTRPDIAYAVGKLSRYTSNPGAKHWQGIIRVLK 1139
Query: 2915 YLRGTIDMGFHFSGSSNVLEVYSNAN*ISKFDESKSTSSYIFILGGGIIPWKSSKQTCMA 3094
YLR T D H++ VLE YS+AN IS +SKS S Y+F LGG + WKSSKQT +A
Sbjct: 1140 YLRFTRDYXLHYTRYPAVLEGYSDANWISNVKDSKSHSGYVFTLGGAAVSWKSSKQTVIA 1199
Query: 3095 KSTMELEFITLKLTGTEAXXXXXXXXXXXXREKLMPLVFIYYDS*DVIVKAKNHIY 3262
+STME EFI L G EA K +P + I+ DS I +A++++Y
Sbjct: 1200 RSTMESEFIALDKCGEEAEWLRHFLEDIPRWSKPVPPICIHCDSQSAIGRAQSNMY 1255
Score = 82.0 bits (201), Expect(4) = 1e-73
Identities = 39/75 (52%), Positives = 51/75 (68%)
Frame = +1
Query: 2281 ENIHMEQSDRCAVLGQENKVCRLVKFLYGLK*ASK*WHEKLDYVVKSSGYIFNDCDRCVY 2460
+ I+MEQ + + GQE KVC+LVK LYGLK A K WHEK D V+ S G+ N+CD+CVY
Sbjct: 927 KEIYMEQPEGFSAPGQEKKVCKLVKSLYGLKQAPKQWHEKFDNVMLSHGFKINECDKCVY 986
Query: 2461 NKFNGKTGVIICLFI 2505
K VI+CL++
Sbjct: 987 VKDTEHGYVIVCLYV 1001
Score = 65.1 bits (157), Expect(4) = 1e-73
Identities = 30/61 (49%), Positives = 42/61 (68%)
Frame = +1
Query: 3265 IYNGKCRHIHLRHNVVQQLLRGGVIVIDFVRSESNLTDLLTNQLTKGLISKSSRRIRLMP 3444
+YNGK RHI RHN ++QLL GVI +D+V+S+ N+ D LT L + L+ KSS + L P
Sbjct: 1254 MYNGKSRHIRRRHNTIRQLLSTGVISVDYVKSKDNIADPLTKGLNRELVEKSSXGMXLKP 1313
Query: 3445 M 3447
+
Sbjct: 1314 I 1314
Score = 63.5 bits (153), Expect(4) = 1e-73
Identities = 34/80 (42%), Positives = 50/80 (62%)
Frame = +3
Query: 2505 MLILRTNLKIVEETKSFPNSKFEKKDL*EVDVMLGIKIVRKDEGFVLSQSHYVEKVLKKF 2684
MLI+ ++ K++ TK+ NS+F+ KD+ DV+LGIKI R +LSQSHYV+K+L KF
Sbjct: 1004 MLIVGSDDKMITSTKNMLNSRFDMKDMGLADVILGIKIKRTSNELILSQSHYVDKILGKF 1063
Query: 2685 RYFESISILIPLDPNMKLKR 2744
S P+D + L +
Sbjct: 1064 DKDNSGVARTPVDVTLHLSK 1083
>emb|CAD40198.2| OSJNBb0043H09.7 [Oryza sativa Japonica Group]
Length = 1302
Score = 143 bits (360), Expect(4) = 4e-73
Identities = 77/162 (47%), Positives = 99/162 (61%)
Frame = +2
Query: 2768 QKEYVRIIGSLMYLINNTHPDIIFVAVVLSRFTSNLSRDH*IALVRIFRYLRGTIDMGFH 2947
Q EY +IIGSLMYL + T PDI F LSRFTSN DH AL R+ RYL+GT+++GFH
Sbjct: 1078 QLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGFH 1137
Query: 2948 FSGSSNVLEVYSNAN*ISKFDESKSTSSYIFILGGGIIPWKSSKQTCMAKSTMELEFITL 3127
++G VLE YS++N IS DE K+TS Y+F LGGG + W+S KQT + +STME E L
Sbjct: 1138 YTGYPAVLEGYSDSNWISDVDEIKATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTAL 1197
Query: 3128 KLTGTEAXXXXXXXXXXXXREKLMPLVFIYYDS*DVIVKAKN 3253
EA EK +P + + D+ VIVK +
Sbjct: 1198 DTATVEAEWLRDLLMDLPVVEKPVPAILMNCDNQTVIVKVNS 1239
Score = 86.3 bits (212), Expect(4) = 4e-73
Identities = 40/87 (45%), Positives = 56/87 (64%)
Frame = +1
Query: 2245 NISDKVINWTT*ENIHMEQSDRCAVLGQENKVCRLVKFLYGLK*ASK*WHEKLDYVVKSS 2424
++ +N E I+M+Q D V GQE KVC+L+K LYGLK A K WHEK D + S+
Sbjct: 902 DVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLISA 961
Query: 2425 GYIFNDCDRCVYNKFNGKTGVIICLFI 2505
G+ N+ D+CVY + G GVI+CL++
Sbjct: 962 GFAVNEADKCVYYRHGGGEGVILCLYV 988
Score = 76.6 bits (187), Expect(4) = 4e-73
Identities = 36/80 (45%), Positives = 53/80 (66%)
Frame = +3
Query: 2505 MLILRTNLKIVEETKSFPNSKFEKKDL*EVDVMLGIKIVRKDEGFVLSQSHYVEKVLKKF 2684
+LI TNL+++ E KSF + F+ KDL DV+L IK++R + G L QSHYVEK+L +F
Sbjct: 991 ILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRF 1050
Query: 2685 RYFESISILIPLDPNMKLKR 2744
Y +S P DP++ L++
Sbjct: 1051 GYIDSKPSPTPYDPSLLLRK 1070
Score = 42.4 bits (98), Expect(4) = 4e-73
Identities = 19/55 (34%), Positives = 33/55 (60%)
Frame = +1
Query: 3283 RHIHLRHNVVQQLLRGGVIVIDFVRSESNLTDLLTNQLTKGLISKSSRRIRLMPM 3447
RH+ R V++L GVI +D++++ NL D T L++ +I +S+ + L PM
Sbjct: 1248 RHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTKGLSRNVIDNASKEMGLRPM 1302
>gb|AAR01716.1| putative Gag and Pol polyprotein [Oryza sativa Japonica Group]
Length = 1302
Score = 142 bits (359), Expect(4) = 7e-73
Identities = 77/162 (47%), Positives = 98/162 (60%)
Frame = +2
Query: 2768 QKEYVRIIGSLMYLINNTHPDIIFVAVVLSRFTSNLSRDH*IALVRIFRYLRGTIDMGFH 2947
Q EY +IIGSLMYL + T PDI F LSRFTSN DH AL R+ RYL+GT+++G H
Sbjct: 1078 QLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLH 1137
Query: 2948 FSGSSNVLEVYSNAN*ISKFDESKSTSSYIFILGGGIIPWKSSKQTCMAKSTMELEFITL 3127
++G VLE YS++N IS DE K+TS Y+F LGGG + W+S KQT + +STME E L
Sbjct: 1138 YTGYPAVLEGYSDSNWISDVDEIKATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTAL 1197
Query: 3128 KLTGTEAXXXXXXXXXXXXREKLMPLVFIYYDS*DVIVKAKN 3253
EA EK +P + + D+ VIVK N
Sbjct: 1198 DTATVEAEWLRDLLMDLPVVEKPVPAILMNCDNQTVIVKVNN 1239
Score = 85.9 bits (211), Expect(4) = 7e-73
Identities = 39/87 (44%), Positives = 56/87 (64%)
Frame = +1
Query: 2245 NISDKVINWTT*ENIHMEQSDRCAVLGQENKVCRLVKFLYGLK*ASK*WHEKLDYVVKSS 2424
++ +N E I+M+Q D + GQE KVC+L+K LYGLK A K WHEK D + S+
Sbjct: 902 DVKTAFLNGELDEEIYMDQPDGFVLEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSA 961
Query: 2425 GYIFNDCDRCVYNKFNGKTGVIICLFI 2505
G+ N+ D+CVY + G GVI+CL++
Sbjct: 962 GFAVNEADKCVYYRHGGGEGVILCLYV 988
Score = 76.6 bits (187), Expect(4) = 7e-73
Identities = 35/80 (43%), Positives = 53/80 (66%)
Frame = +3
Query: 2505 MLILRTNLKIVEETKSFPNSKFEKKDL*EVDVMLGIKIVRKDEGFVLSQSHYVEKVLKKF 2684
+LI TN++++ E KSF + F+ KDL DV+L IK++R + G L QSHYVEK+L +F
Sbjct: 991 ILIFGTNIEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRF 1050
Query: 2685 RYFESISILIPLDPNMKLKR 2744
Y +S P DP++ L++
Sbjct: 1051 GYIDSKPSPTPYDPSLSLRK 1070
Score = 42.4 bits (98), Expect(4) = 7e-73
Identities = 19/55 (34%), Positives = 33/55 (60%)
Frame = +1
Query: 3283 RHIHLRHNVVQQLLRGGVIVIDFVRSESNLTDLLTNQLTKGLISKSSRRIRLMPM 3447
RH+ R V++L GVI +D++++ NL D T L++ +I +S+ + L PM
Sbjct: 1248 RHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTKGLSRNVIDNASKEMGLRPM 1302
>gb|ABA96419.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1095
Score = 140 bits (354), Expect(4) = 1e-72
Identities = 76/162 (46%), Positives = 98/162 (60%)
Frame = +2
Query: 2768 QKEYVRIIGSLMYLINNTHPDIIFVAVVLSRFTSNLSRDH*IALVRIFRYLRGTIDMGFH 2947
Q EY +IIGSLMYL + T PDI F LSRFTSN DH AL R+ RYL+GT+++G H
Sbjct: 871 QLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLH 930
Query: 2948 FSGSSNVLEVYSNAN*ISKFDESKSTSSYIFILGGGIIPWKSSKQTCMAKSTMELEFITL 3127
++G VLE YS++N IS DE K+TS Y+F LGGG + W+S KQT + +STME E L
Sbjct: 931 YTGYPAVLEGYSDSNWISDVDEIKATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTAL 990
Query: 3128 KLTGTEAXXXXXXXXXXXXREKLMPLVFIYYDS*DVIVKAKN 3253
EA EK +P + + D+ VIVK +
Sbjct: 991 DTATVEAEWLRDLLMDLPVVEKPVPAILMNCDNQTVIVKVNS 1032
Score = 87.0 bits (214), Expect(4) = 1e-72
Identities = 40/87 (45%), Positives = 56/87 (64%)
Frame = +1
Query: 2245 NISDKVINWTT*ENIHMEQSDRCAVLGQENKVCRLVKFLYGLK*ASK*WHEKLDYVVKSS 2424
++ +N E I+M+Q D V GQE KVC+L+K LYGLK A K WHEK D + S+
Sbjct: 695 DVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSA 754
Query: 2425 GYIFNDCDRCVYNKFNGKTGVIICLFI 2505
G+ N+ D+CVY + G GVI+CL++
Sbjct: 755 GFAVNEADKCVYYRHGGGEGVILCLYV 781
Score = 76.6 bits (187), Expect(4) = 1e-72
Identities = 36/80 (45%), Positives = 53/80 (66%)
Frame = +3
Query: 2505 MLILRTNLKIVEETKSFPNSKFEKKDL*EVDVMLGIKIVRKDEGFVLSQSHYVEKVLKKF 2684
+LI TNL+++ E KSF + F+ KDL DV+L IK++R + G L QSHYVEK+L +F
Sbjct: 784 ILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRF 843
Query: 2685 RYFESISILIPLDPNMKLKR 2744
Y +S P DP++ L++
Sbjct: 844 GYIDSKPSPTPYDPSLLLRK 863
Score = 42.7 bits (99), Expect(4) = 1e-72
Identities = 19/55 (34%), Positives = 34/55 (61%)
Frame = +1
Query: 3283 RHIHLRHNVVQQLLRGGVIVIDFVRSESNLTDLLTNQLTKGLISKSSRRIRLMPM 3447
RH+ R V++L GVI +D++++ NL D T L++ +I+ +S+ + L PM
Sbjct: 1041 RHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTKGLSRNVINNASKEMGLRPM 1095
>gb|ABF96702.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1518
Score = 140 bits (354), Expect(4) = 1e-72
Identities = 76/162 (46%), Positives = 98/162 (60%)
Frame = +2
Query: 2768 QKEYVRIIGSLMYLINNTHPDIIFVAVVLSRFTSNLSRDH*IALVRIFRYLRGTIDMGFH 2947
Q EY +IIGSLMYL + T PDI F LSRFTSN DH AL R+ RYL+GT+++G H
Sbjct: 1294 QLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLH 1353
Query: 2948 FSGSSNVLEVYSNAN*ISKFDESKSTSSYIFILGGGIIPWKSSKQTCMAKSTMELEFITL 3127
++G VLE YS++N IS DE K+TS Y+F LGGG + W+S KQT + +STME E L
Sbjct: 1354 YTGYPAVLEGYSDSNWISDVDEIKATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTAL 1413
Query: 3128 KLTGTEAXXXXXXXXXXXXREKLMPLVFIYYDS*DVIVKAKN 3253
EA EK +P + + D+ VIVK +
Sbjct: 1414 DTATVEAEWLRDLLMDLPVVEKPVPAILMNCDNQTVIVKVNS 1455
Score = 87.0 bits (214), Expect(4) = 1e-72
Identities = 40/87 (45%), Positives = 56/87 (64%)
Frame = +1
Query: 2245 NISDKVINWTT*ENIHMEQSDRCAVLGQENKVCRLVKFLYGLK*ASK*WHEKLDYVVKSS 2424
++ +N E I+M+Q D V GQE KVC+L+K LYGLK A K WHEK D + S+
Sbjct: 1118 DVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSA 1177
Query: 2425 GYIFNDCDRCVYNKFNGKTGVIICLFI 2505
G+ N+ D+CVY + G GVI+CL++
Sbjct: 1178 GFAVNEADKCVYYRHGGGEGVILCLYV 1204
Score = 76.6 bits (187), Expect(4) = 1e-72
Identities = 36/80 (45%), Positives = 53/80 (66%)
Frame = +3
Query: 2505 MLILRTNLKIVEETKSFPNSKFEKKDL*EVDVMLGIKIVRKDEGFVLSQSHYVEKVLKKF 2684
+LI TNL+++ E KSF + F+ KDL DV+L IK++R + G L QSHYVEK+L +F
Sbjct: 1207 ILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRF 1266
Query: 2685 RYFESISILIPLDPNMKLKR 2744
Y +S P DP++ L++
Sbjct: 1267 GYIDSKPSPTPYDPSLLLRK 1286
Score = 42.4 bits (98), Expect(4) = 1e-72
Identities = 19/55 (34%), Positives = 33/55 (60%)
Frame = +1
Query: 3283 RHIHLRHNVVQQLLRGGVIVIDFVRSESNLTDLLTNQLTKGLISKSSRRIRLMPM 3447
RH+ R V++L GVI +D++++ NL D T L++ +I +S+ + L PM
Sbjct: 1464 RHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTKGLSRNVIDNASKEMGLRPM 1518
>gb|AAU44026.2| putative polyprotein [Oryza sativa Japonica Group]
Length = 1391
Score = 140 bits (354), Expect(4) = 1e-72
Identities = 76/162 (46%), Positives = 98/162 (60%)
Frame = +2
Query: 2768 QKEYVRIIGSLMYLINNTHPDIIFVAVVLSRFTSNLSRDH*IALVRIFRYLRGTIDMGFH 2947
Q EY +IIGSLMYL + T PDI F LSRFTSN DH AL R+ RYL+GT+++G H
Sbjct: 1167 QLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLH 1226
Query: 2948 FSGSSNVLEVYSNAN*ISKFDESKSTSSYIFILGGGIIPWKSSKQTCMAKSTMELEFITL 3127
++G VLE YS++N IS DE K+TS Y+F LGGG + W+S KQT + +STME E L
Sbjct: 1227 YTGYPAVLEGYSDSNWISDVDEIKATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTAL 1286
Query: 3128 KLTGTEAXXXXXXXXXXXXREKLMPLVFIYYDS*DVIVKAKN 3253
EA EK +P + + D+ VIVK +
Sbjct: 1287 DTATVEAEWLRDLLMDLPVVEKPVPAILMNCDNQTVIVKVNS 1328
Score = 87.0 bits (214), Expect(4) = 1e-72
Identities = 40/87 (45%), Positives = 56/87 (64%)
Frame = +1
Query: 2245 NISDKVINWTT*ENIHMEQSDRCAVLGQENKVCRLVKFLYGLK*ASK*WHEKLDYVVKSS 2424
++ +N E I+M+Q D V GQE KVC+L+K LYGLK A K WHEK D + S+
Sbjct: 991 DVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSA 1050
Query: 2425 GYIFNDCDRCVYNKFNGKTGVIICLFI 2505
G+ N+ D+CVY + G GVI+CL++
Sbjct: 1051 GFAVNEADKCVYYRHGGGEGVILCLYV 1077
Score = 76.6 bits (187), Expect(4) = 1e-72
Identities = 36/80 (45%), Positives = 53/80 (66%)
Frame = +3
Query: 2505 MLILRTNLKIVEETKSFPNSKFEKKDL*EVDVMLGIKIVRKDEGFVLSQSHYVEKVLKKF 2684
+LI TNL+++ E KSF + F+ KDL DV+L IK++R + G L QSHYVEK+L +F
Sbjct: 1080 ILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRF 1139
Query: 2685 RYFESISILIPLDPNMKLKR 2744
Y +S P DP++ L++
Sbjct: 1140 GYIDSKPSPTPYDPSLLLRK 1159
Score = 42.4 bits (98), Expect(4) = 1e-72
Identities = 19/55 (34%), Positives = 33/55 (60%)
Frame = +1
Query: 3283 RHIHLRHNVVQQLLRGGVIVIDFVRSESNLTDLLTNQLTKGLISKSSRRIRLMPM 3447
RH+ R V++L GVI +D++++ NL D T L++ +I +S+ + L PM
Sbjct: 1337 RHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTKGLSRNVIDNASKEMGLRPM 1391
>gb|AAP20858.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group]
Length = 1302
Score = 140 bits (354), Expect(4) = 1e-72
Identities = 76/162 (46%), Positives = 98/162 (60%)
Frame = +2
Query: 2768 QKEYVRIIGSLMYLINNTHPDIIFVAVVLSRFTSNLSRDH*IALVRIFRYLRGTIDMGFH 2947
Q EY +IIGSLMYL + T PDI F LSRFTSN DH AL R+ RYL+GT+++G H
Sbjct: 1078 QLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLH 1137
Query: 2948 FSGSSNVLEVYSNAN*ISKFDESKSTSSYIFILGGGIIPWKSSKQTCMAKSTMELEFITL 3127
++G VLE YS++N IS DE K+TS Y+F LGGG + W+S KQT + +STME E L
Sbjct: 1138 YTGYPAVLEGYSDSNWISDVDEIKATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTAL 1197
Query: 3128 KLTGTEAXXXXXXXXXXXXREKLMPLVFIYYDS*DVIVKAKN 3253
EA EK +P + + D+ VIVK +
Sbjct: 1198 DTATVEAEWLRDLLMDLPVVEKPVPAILMNCDNQTVIVKVNS 1239
Score = 87.0 bits (214), Expect(4) = 1e-72
Identities = 40/87 (45%), Positives = 56/87 (64%)
Frame = +1
Query: 2245 NISDKVINWTT*ENIHMEQSDRCAVLGQENKVCRLVKFLYGLK*ASK*WHEKLDYVVKSS 2424
++ +N E I+M+Q D V GQE KVC+L+K LYGLK A K WHEK D + S+
Sbjct: 902 DVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSA 961
Query: 2425 GYIFNDCDRCVYNKFNGKTGVIICLFI 2505
G+ N+ D+CVY + G GVI+CL++
Sbjct: 962 GFAVNEADKCVYYRHGGGEGVILCLYV 988
Score = 76.6 bits (187), Expect(4) = 1e-72
Identities = 36/80 (45%), Positives = 53/80 (66%)
Frame = +3
Query: 2505 MLILRTNLKIVEETKSFPNSKFEKKDL*EVDVMLGIKIVRKDEGFVLSQSHYVEKVLKKF 2684
+LI TNL+++ E KSF + F+ KDL DV+L IK++R + G L QSHYVEK+L +F
Sbjct: 991 ILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRF 1050
Query: 2685 RYFESISILIPLDPNMKLKR 2744
Y +S P DP++ L++
Sbjct: 1051 GYIDSKPSPTPYDPSLLLRK 1070
Score = 42.4 bits (98), Expect(4) = 1e-72
Identities = 19/55 (34%), Positives = 33/55 (60%)
Frame = +1
Query: 3283 RHIHLRHNVVQQLLRGGVIVIDFVRSESNLTDLLTNQLTKGLISKSSRRIRLMPM 3447
RH+ R V++L GVI +D++++ NL D T L++ +I +S+ + L PM
Sbjct: 1248 RHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTKGLSRNVIDNASKEMGLRPM 1302
>gb|AAR01682.1| putative gag and pol protein [Oryza sativa Japonica Group]
Length = 1302
Score = 140 bits (354), Expect(4) = 2e-72
Identities = 76/162 (46%), Positives = 98/162 (60%)
Frame = +2
Query: 2768 QKEYVRIIGSLMYLINNTHPDIIFVAVVLSRFTSNLSRDH*IALVRIFRYLRGTIDMGFH 2947
Q EY +IIGSLMYL + T PDI F LSRFTSN DH AL R+ RYL+GT+++G H
Sbjct: 1078 QLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLH 1137
Query: 2948 FSGSSNVLEVYSNAN*ISKFDESKSTSSYIFILGGGIIPWKSSKQTCMAKSTMELEFITL 3127
++G VLE YS++N IS DE K+TS Y+F LGGG + W+S KQT + +STME E L
Sbjct: 1138 YTGYPAVLEGYSDSNWISDVDEIKATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTAL 1197
Query: 3128 KLTGTEAXXXXXXXXXXXXREKLMPLVFIYYDS*DVIVKAKN 3253
EA EK +P + + D+ VIVK +
Sbjct: 1198 DTATVEAEWLRDLLMDLPVVEKPVPAILMNCDNQTVIVKVNS 1239
Score = 85.9 bits (211), Expect(4) = 2e-72
Identities = 39/87 (44%), Positives = 56/87 (64%)
Frame = +1
Query: 2245 NISDKVINWTT*ENIHMEQSDRCAVLGQENKVCRLVKFLYGLK*ASK*WHEKLDYVVKSS 2424
++ +N E I+M+Q D + GQE KVC+L+K LYGLK A K WHEK D + S+
Sbjct: 902 DVKTAFLNGELDEEIYMDQPDGFVLEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSA 961
Query: 2425 GYIFNDCDRCVYNKFNGKTGVIICLFI 2505
G+ N+ D+CVY + G GVI+CL++
Sbjct: 962 GFAVNEADKCVYYRHGGGEGVILCLYV 988
Score = 77.4 bits (189), Expect(4) = 2e-72
Identities = 36/80 (45%), Positives = 53/80 (66%)
Frame = +3
Query: 2505 MLILRTNLKIVEETKSFPNSKFEKKDL*EVDVMLGIKIVRKDEGFVLSQSHYVEKVLKKF 2684
+LI TNL+++ E KSF + F+ KDL DV+L IK++R + G L QSHYVEK+L +F
Sbjct: 991 ILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRF 1050
Query: 2685 RYFESISILIPLDPNMKLKR 2744
Y +S P DP++ L++
Sbjct: 1051 GYIDSKPSPTPYDPSLSLRK 1070
Score = 42.4 bits (98), Expect(4) = 2e-72
Identities = 19/55 (34%), Positives = 33/55 (60%)
Frame = +1
Query: 3283 RHIHLRHNVVQQLLRGGVIVIDFVRSESNLTDLLTNQLTKGLISKSSRRIRLMPM 3447
RH+ R V++L GVI +D++++ NL D T L++ +I +S+ + L PM
Sbjct: 1248 RHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTKGLSRNVIDNASKEMGLRPM 1302
>gb|AAT44162.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1302
Score = 140 bits (353), Expect(4) = 2e-72
Identities = 76/162 (46%), Positives = 98/162 (60%)
Frame = +2
Query: 2768 QKEYVRIIGSLMYLINNTHPDIIFVAVVLSRFTSNLSRDH*IALVRIFRYLRGTIDMGFH 2947
Q EY +IIGSLMYL + T PDI F LSRFTSN DH AL R+ RYL+GT+++G H
Sbjct: 1078 QLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLH 1137
Query: 2948 FSGSSNVLEVYSNAN*ISKFDESKSTSSYIFILGGGIIPWKSSKQTCMAKSTMELEFITL 3127
++ VLE YS++N IS DE K+TS Y+F LGGG + W+S KQT + +STME E L
Sbjct: 1138 YTRYPAVLEGYSDSNWISDVDEIKATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTAL 1197
Query: 3128 KLTGTEAXXXXXXXXXXXXREKLMPLVFIYYDS*DVIVKAKN 3253
EA EKL+P + + D+ VIVK +
Sbjct: 1198 DTATVEAEWLRDLLMDLPVVEKLVPAILMNCDNQTVIVKVNS 1239
Score = 87.0 bits (214), Expect(4) = 2e-72
Identities = 40/87 (45%), Positives = 56/87 (64%)
Frame = +1
Query: 2245 NISDKVINWTT*ENIHMEQSDRCAVLGQENKVCRLVKFLYGLK*ASK*WHEKLDYVVKSS 2424
++ +N E I+M+Q D V GQE KVC+L+K LYGLK A K WHEK D + S+
Sbjct: 902 DVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSA 961
Query: 2425 GYIFNDCDRCVYNKFNGKTGVIICLFI 2505
G+ N+ D+CVY + G GVI+CL++
Sbjct: 962 GFAVNEADKCVYYRHGGGEGVILCLYV 988
Score = 76.6 bits (187), Expect(4) = 2e-72
Identities = 36/80 (45%), Positives = 53/80 (66%)
Frame = +3
Query: 2505 MLILRTNLKIVEETKSFPNSKFEKKDL*EVDVMLGIKIVRKDEGFVLSQSHYVEKVLKKF 2684
+LI TNL+++ E KSF + F+ KDL DV+L IK++R + G L QSHYVEK+L +F
Sbjct: 991 ILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRF 1050
Query: 2685 RYFESISILIPLDPNMKLKR 2744
Y +S P DP++ L++
Sbjct: 1051 GYIDSKPSPTPYDPSLLLRK 1070
Score = 42.4 bits (98), Expect(4) = 2e-72
Identities = 19/55 (34%), Positives = 33/55 (60%)
Frame = +1
Query: 3283 RHIHLRHNVVQQLLRGGVIVIDFVRSESNLTDLLTNQLTKGLISKSSRRIRLMPM 3447
RH+ R V++L GVI +D++++ NL D T L++ +I +S+ + L PM
Sbjct: 1248 RHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTKGLSRNVIDNASKEMGLRPM 1302
>emb|CAE02325.2| OSJNBb0112E13.7 [Oryza sativa Japonica Group]
Length = 1342
Score = 141 bits (355), Expect(4) = 3e-72
Identities = 77/162 (47%), Positives = 98/162 (60%)
Frame = +2
Query: 2768 QKEYVRIIGSLMYLINNTHPDIIFVAVVLSRFTSNLSRDH*IALVRIFRYLRGTIDMGFH 2947
Q EY +IIGSLMYL + T PDI F LSRFTSN DH AL RI RYL+GT+++G H
Sbjct: 1078 QLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALERIMRYLKGTVELGLH 1137
Query: 2948 FSGSSNVLEVYSNAN*ISKFDESKSTSSYIFILGGGIIPWKSSKQTCMAKSTMELEFITL 3127
++G VLE YS++N IS DE K+TS Y+F LGGG + W+S KQT + +STME E L
Sbjct: 1138 YTGYPAVLEGYSDSNWISDVDEIKATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTAL 1197
Query: 3128 KLTGTEAXXXXXXXXXXXXREKLMPLVFIYYDS*DVIVKAKN 3253
EA EK +P + + D+ VIVK +
Sbjct: 1198 DTATVEAEWLRDLLMDLPVVEKPVPAILMNCDNQTVIVKVNS 1239
Score = 87.0 bits (214), Expect(4) = 3e-72
Identities = 40/87 (45%), Positives = 56/87 (64%)
Frame = +1
Query: 2245 NISDKVINWTT*ENIHMEQSDRCAVLGQENKVCRLVKFLYGLK*ASK*WHEKLDYVVKSS 2424
++ +N E I+M+Q D V GQE KVC+L+K LYGLK A K WHEK D + S+
Sbjct: 902 DVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSA 961
Query: 2425 GYIFNDCDRCVYNKFNGKTGVIICLFI 2505
G+ N+ D+CVY + G GVI+CL++
Sbjct: 962 GFAVNEADKCVYYRHGGGKGVILCLYV 988
Score = 76.6 bits (187), Expect(4) = 3e-72
Identities = 36/80 (45%), Positives = 53/80 (66%)
Frame = +3
Query: 2505 MLILRTNLKIVEETKSFPNSKFEKKDL*EVDVMLGIKIVRKDEGFVLSQSHYVEKVLKKF 2684
+LI TNL+++ E KSF + F+ KDL DV+L IK++R + G L QSHYVEK+L +F
Sbjct: 991 ILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRF 1050
Query: 2685 RYFESISILIPLDPNMKLKR 2744
Y +S P DP++ L++
Sbjct: 1051 GYIDSKPSPTPYDPSLLLRK 1070
Score = 40.8 bits (94), Expect(4) = 3e-72
Identities = 18/55 (32%), Positives = 33/55 (60%)
Frame = +1
Query: 3283 RHIHLRHNVVQQLLRGGVIVIDFVRSESNLTDLLTNQLTKGLISKSSRRIRLMPM 3447
RH+ R V++L GVI +D++++ NL D T L++ +I +S+ + L P+
Sbjct: 1248 RHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTKGLSRNVIDNASKEMGLRPI 1302
>gb|AAT58846.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1229
Score = 140 bits (354), Expect(4) = 3e-72
Identities = 76/162 (46%), Positives = 98/162 (60%)
Frame = +2
Query: 2768 QKEYVRIIGSLMYLINNTHPDIIFVAVVLSRFTSNLSRDH*IALVRIFRYLRGTIDMGFH 2947
Q EY +IIGSLMYL + T PDI F LSRFTSN DH AL R+ RYL+GT+++G H
Sbjct: 1005 QLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLH 1064
Query: 2948 FSGSSNVLEVYSNAN*ISKFDESKSTSSYIFILGGGIIPWKSSKQTCMAKSTMELEFITL 3127
++G VLE YS++N IS DE K+TS Y+F LGGG + W+S KQT + +STME E L
Sbjct: 1065 YTGYPAVLEGYSDSNWISDVDEIKATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTAL 1124
Query: 3128 KLTGTEAXXXXXXXXXXXXREKLMPLVFIYYDS*DVIVKAKN 3253
EA EK +P + + D+ VIVK +
Sbjct: 1125 DTATVEAEWLRDLLMDLPVVEKPVPAILMNCDNQTVIVKVNS 1166
Score = 87.0 bits (214), Expect(4) = 3e-72
Identities = 40/87 (45%), Positives = 56/87 (64%)
Frame = +1
Query: 2245 NISDKVINWTT*ENIHMEQSDRCAVLGQENKVCRLVKFLYGLK*ASK*WHEKLDYVVKSS 2424
++ +N E I+M+Q D V GQE KVC+L+K LYGLK A K WHEK D + S+
Sbjct: 829 DVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSA 888
Query: 2425 GYIFNDCDRCVYNKFNGKTGVIICLFI 2505
G+ N+ D+CVY + G GVI+CL++
Sbjct: 889 GFAVNEADKCVYYRHGGGEGVILCLYV 915
Score = 75.5 bits (184), Expect(4) = 3e-72
Identities = 36/80 (45%), Positives = 52/80 (65%)
Frame = +3
Query: 2505 MLILRTNLKIVEETKSFPNSKFEKKDL*EVDVMLGIKIVRKDEGFVLSQSHYVEKVLKKF 2684
+LI TNL+++ E KSF F+ KDL DV+L IK++R + G L QSHYVEK+L +F
Sbjct: 918 ILIFGTNLEVINEVKSFLPQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRF 977
Query: 2685 RYFESISILIPLDPNMKLKR 2744
Y +S P DP++ L++
Sbjct: 978 GYIDSKPSPTPYDPSLLLRK 997
Score = 42.4 bits (98), Expect(4) = 3e-72
Identities = 19/55 (34%), Positives = 33/55 (60%)
Frame = +1
Query: 3283 RHIHLRHNVVQQLLRGGVIVIDFVRSESNLTDLLTNQLTKGLISKSSRRIRLMPM 3447
RH+ R V++L GVI +D++++ NL D T L++ +I +S+ + L PM
Sbjct: 1175 RHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTKGLSRNVIDNASKEMGLRPM 1229
>gb|ABF96953.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1197
Score = 140 bits (352), Expect(4) = 3e-72
Identities = 76/162 (46%), Positives = 99/162 (61%)
Frame = +2
Query: 2768 QKEYVRIIGSLMYLINNTHPDIIFVAVVLSRFTSNLSRDH*IALVRIFRYLRGTIDMGFH 2947
Q EY +IIGSLMYL + T PDI FV LSRFTSN DH AL R+ YL+GT+++G H
Sbjct: 973 QLEYSQIIGSLMYLASATRPDISFVVSKLSRFTSNPGDDHWRALERVMCYLKGTVELGLH 1032
Query: 2948 FSGSSNVLEVYSNAN*ISKFDESKSTSSYIFILGGGIIPWKSSKQTCMAKSTMELEFITL 3127
++G VLE YS++N IS DE K+TS Y+F LGGG + W+S KQT + +STME+E L
Sbjct: 1033 YTGYPAVLEGYSDSNWISDVDEIKATSGYVFTLGGGAVSWRSCKQTILTRSTMEVELTAL 1092
Query: 3128 KLTGTEAXXXXXXXXXXXXREKLMPLVFIYYDS*DVIVKAKN 3253
EA EK +P + + D+ VIVK +
Sbjct: 1093 DTATVEAEWLRDLLMDLPVVEKPVPAILMNCDNQTVIVKVNS 1134
Score = 86.3 bits (212), Expect(4) = 3e-72
Identities = 40/87 (45%), Positives = 55/87 (63%)
Frame = +1
Query: 2245 NISDKVINWTT*ENIHMEQSDRCAVLGQENKVCRLVKFLYGLK*ASK*WHEKLDYVVKSS 2424
++ +N E I+M+Q D V GQE KVC+L+K LYGLK A K WHEK D S+
Sbjct: 797 DVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTFTSA 856
Query: 2425 GYIFNDCDRCVYNKFNGKTGVIICLFI 2505
G+ N+ D+CVY + G GVI+CL++
Sbjct: 857 GFAVNEADKCVYYRHGGGEGVILCLYV 883
Score = 76.6 bits (187), Expect(4) = 3e-72
Identities = 36/80 (45%), Positives = 53/80 (66%)
Frame = +3
Query: 2505 MLILRTNLKIVEETKSFPNSKFEKKDL*EVDVMLGIKIVRKDEGFVLSQSHYVEKVLKKF 2684
+LI TNL+++ E KSF + F+ KDL DV+L IK++R + G L QSHYVEK+L +F
Sbjct: 886 ILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRF 945
Query: 2685 RYFESISILIPLDPNMKLKR 2744
Y +S P DP++ L++
Sbjct: 946 GYIDSKPSPTPYDPSLLLRK 965
Score = 42.7 bits (99), Expect(4) = 3e-72
Identities = 19/55 (34%), Positives = 34/55 (61%)
Frame = +1
Query: 3283 RHIHLRHNVVQQLLRGGVIVIDFVRSESNLTDLLTNQLTKGLISKSSRRIRLMPM 3447
RH+ R V++L GVI +D++++ NL D T L++ +I+ +S+ + L PM
Sbjct: 1143 RHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTKGLSRNVINNASKEMGLRPM 1197
>gb|AAS01934.1| putative Integrase core domain containing protein [Oryza sativa
Japonica Group]
Length = 1180
Score = 140 bits (352), Expect(4) = 3e-72
Identities = 76/162 (46%), Positives = 99/162 (61%)
Frame = +2
Query: 2768 QKEYVRIIGSLMYLINNTHPDIIFVAVVLSRFTSNLSRDH*IALVRIFRYLRGTIDMGFH 2947
Q EY +IIGSLMYL + T PDI FV LSRFTSN DH AL R+ YL+GT+++G H
Sbjct: 956 QLEYSQIIGSLMYLASATRPDISFVVSKLSRFTSNPGDDHWRALERVMCYLKGTVELGLH 1015
Query: 2948 FSGSSNVLEVYSNAN*ISKFDESKSTSSYIFILGGGIIPWKSSKQTCMAKSTMELEFITL 3127
++G VLE YS++N IS DE K+TS Y+F LGGG + W+S KQT + +STME+E L
Sbjct: 1016 YTGYPAVLEGYSDSNWISDVDEIKATSGYVFTLGGGAVSWRSCKQTILTRSTMEVELTAL 1075
Query: 3128 KLTGTEAXXXXXXXXXXXXREKLMPLVFIYYDS*DVIVKAKN 3253
EA EK +P + + D+ VIVK +
Sbjct: 1076 DTATVEAEWLRDLLMDLPVVEKPVPAILMNCDNQTVIVKVNS 1117
Score = 86.3 bits (212), Expect(4) = 3e-72
Identities = 40/87 (45%), Positives = 55/87 (63%)
Frame = +1
Query: 2245 NISDKVINWTT*ENIHMEQSDRCAVLGQENKVCRLVKFLYGLK*ASK*WHEKLDYVVKSS 2424
++ +N E I+M+Q D V GQE KVC+L+K LYGLK A K WHEK D S+
Sbjct: 780 DVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTFTSA 839
Query: 2425 GYIFNDCDRCVYNKFNGKTGVIICLFI 2505
G+ N+ D+CVY + G GVI+CL++
Sbjct: 840 GFAVNEADKCVYYRHGGGEGVILCLYV 866
Score = 76.6 bits (187), Expect(4) = 3e-72
Identities = 36/80 (45%), Positives = 53/80 (66%)
Frame = +3
Query: 2505 MLILRTNLKIVEETKSFPNSKFEKKDL*EVDVMLGIKIVRKDEGFVLSQSHYVEKVLKKF 2684
+LI TNL+++ E KSF + F+ KDL DV+L IK++R + G L QSHYVEK+L +F
Sbjct: 869 ILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRF 928
Query: 2685 RYFESISILIPLDPNMKLKR 2744
Y +S P DP++ L++
Sbjct: 929 GYIDSKPSPTPYDPSLLLRK 948
Score = 42.7 bits (99), Expect(4) = 3e-72
Identities = 19/55 (34%), Positives = 34/55 (61%)
Frame = +1
Query: 3283 RHIHLRHNVVQQLLRGGVIVIDFVRSESNLTDLLTNQLTKGLISKSSRRIRLMPM 3447
RH+ R V++L GVI +D++++ NL D T L++ +I+ +S+ + L PM
Sbjct: 1126 RHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTKGLSRNVINNASKEMGLRPM 1180
>emb|CAD40744.2| OSJNBa0072D21.4 [Oryza sativa Japonica Group]
Length = 1319
Score = 140 bits (354), Expect(4) = 4e-72
Identities = 76/162 (46%), Positives = 98/162 (60%)
Frame = +2
Query: 2768 QKEYVRIIGSLMYLINNTHPDIIFVAVVLSRFTSNLSRDH*IALVRIFRYLRGTIDMGFH 2947
Q EY +IIGSLMYL + T PDI F LSRFTSN DH AL R+ RYL+GT+++G H
Sbjct: 1078 QLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLH 1137
Query: 2948 FSGSSNVLEVYSNAN*ISKFDESKSTSSYIFILGGGIIPWKSSKQTCMAKSTMELEFITL 3127
++G VLE YS++N IS DE K+TS Y+F LGGG + W+S KQT + +STME E L
Sbjct: 1138 YTGYPAVLEGYSDSNWISDVDEIKATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTAL 1197
Query: 3128 KLTGTEAXXXXXXXXXXXXREKLMPLVFIYYDS*DVIVKAKN 3253
EA EK +P + + D+ VIVK +
Sbjct: 1198 DTATVEAEWLRDLLMDLPVVEKPVPAILMNCDNQTVIVKVNS 1239
Score = 87.0 bits (214), Expect(4) = 4e-72
Identities = 40/87 (45%), Positives = 56/87 (64%)
Frame = +1
Query: 2245 NISDKVINWTT*ENIHMEQSDRCAVLGQENKVCRLVKFLYGLK*ASK*WHEKLDYVVKSS 2424
++ +N E I+M+Q D V GQE KVC+L+K LYGLK A K WHEK D + S+
Sbjct: 902 DVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSA 961
Query: 2425 GYIFNDCDRCVYNKFNGKTGVIICLFI 2505
G+ N+ D+CVY + G GVI+CL++
Sbjct: 962 GFAVNEADKCVYYRHGGGEGVILCLYV 988
Score = 76.6 bits (187), Expect(4) = 4e-72
Identities = 36/80 (45%), Positives = 53/80 (66%)
Frame = +3
Query: 2505 MLILRTNLKIVEETKSFPNSKFEKKDL*EVDVMLGIKIVRKDEGFVLSQSHYVEKVLKKF 2684
+LI TNL+++ E KSF + F+ KDL DV+L IK++R + G L QSHYVEK+L +F
Sbjct: 991 ILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRF 1050
Query: 2685 RYFESISILIPLDPNMKLKR 2744
Y +S P DP++ L++
Sbjct: 1051 GYIDSKPSPTPYDPSLLLRK 1070
Score = 40.8 bits (94), Expect(4) = 4e-72
Identities = 18/55 (32%), Positives = 33/55 (60%)
Frame = +1
Query: 3283 RHIHLRHNVVQQLLRGGVIVIDFVRSESNLTDLLTNQLTKGLISKSSRRIRLMPM 3447
RH+ R V++L GVI +D++++ NL D T L++ +I +S+ + L P+
Sbjct: 1248 RHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTKGLSRNVIDNASKEMGLRPI 1302
>gb|ABF94929.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1284
Score = 140 bits (354), Expect(4) = 4e-72
Identities = 76/162 (46%), Positives = 99/162 (61%)
Frame = +2
Query: 2768 QKEYVRIIGSLMYLINNTHPDIIFVAVVLSRFTSNLSRDH*IALVRIFRYLRGTIDMGFH 2947
Q EY +IIGSLMYL + T PDI FV LSRFTSN +H AL R+ RYL+GT+++G H
Sbjct: 973 QLEYSQIIGSLMYLASTTRPDISFVVSKLSRFTSNPGDNHWRALERVMRYLKGTVELGLH 1032
Query: 2948 FSGSSNVLEVYSNAN*ISKFDESKSTSSYIFILGGGIIPWKSSKQTCMAKSTMELEFITL 3127
++G VLE YS++N IS DE K+TS Y+F LGGG + W+S KQT + +STME E L
Sbjct: 1033 YTGYPAVLEGYSDSNWISDVDEIKATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTAL 1092
Query: 3128 KLTGTEAXXXXXXXXXXXXREKLMPLVFIYYDS*DVIVKAKN 3253
EA EK +P + + D+ VIVK +
Sbjct: 1093 DTATVEAEWLRDLLMDLPIVEKPVPAIVMNCDNQTVIVKVNS 1134
Score = 86.7 bits (213), Expect(4) = 4e-72
Identities = 38/75 (50%), Positives = 53/75 (70%)
Frame = +1
Query: 2281 ENIHMEQSDRCAVLGQENKVCRLVKFLYGLK*ASK*WHEKLDYVVKSSGYIFNDCDRCVY 2460
E I+M+Q D V GQ+ KVC+L+K LYGLK A K WHEK D + S+G+ N+ D+CVY
Sbjct: 809 EEIYMDQPDGFVVEGQKGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSTGFAVNEADKCVY 868
Query: 2461 NKFNGKTGVIICLFI 2505
++ G GVI+CL++
Sbjct: 869 YRYGGGEGVILCLYV 883
Score = 77.0 bits (188), Expect(4) = 4e-72
Identities = 36/80 (45%), Positives = 54/80 (67%)
Frame = +3
Query: 2505 MLILRTNLKIVEETKSFPNSKFEKKDL*EVDVMLGIKIVRKDEGFVLSQSHYVEKVLKKF 2684
+LI TNL+++ E KSF + F+ KDL VDV+L IK+++ + G L QSHYVEK+L +F
Sbjct: 886 ILIFGTNLEVINEVKSFLSQNFDTKDLGVVDVILNIKLIKGENGITLLQSHYVEKILNRF 945
Query: 2685 RYFESISILIPLDPNMKLKR 2744
Y +S P DP++ L++
Sbjct: 946 GYIDSKPSPTPYDPSLLLRK 965
Score = 40.8 bits (94), Expect(4) = 4e-72
Identities = 18/55 (32%), Positives = 33/55 (60%)
Frame = +1
Query: 3283 RHIHLRHNVVQQLLRGGVIVIDFVRSESNLTDLLTNQLTKGLISKSSRRIRLMPM 3447
RH+ R V++L GVI +D++++ NL D T L++ +I +S+ + L P+
Sbjct: 1143 RHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTKGLSRNVIDNASKEMGLRPI 1197
>emb|CAE03764.2| OSJNBa0013K16.13 [Oryza sativa Japonica Group]
Length = 1264
Score = 139 bits (350), Expect(4) = 5e-72
Identities = 76/162 (46%), Positives = 97/162 (59%)
Frame = +2
Query: 2768 QKEYVRIIGSLMYLINNTHPDIIFVAVVLSRFTSNLSRDH*IALVRIFRYLRGTIDMGFH 2947
Q EY +IIGSLMYL + T PDI F LSRFTSN DH AL R+ RYL+GT+ +G H
Sbjct: 1040 QLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVGLGVH 1099
Query: 2948 FSGSSNVLEVYSNAN*ISKFDESKSTSSYIFILGGGIIPWKSSKQTCMAKSTMELEFITL 3127
++G VLE YS++N IS DE K+TS Y+F LGGG + W+S KQT + +STME E L
Sbjct: 1100 YTGYPAVLEGYSDSNWISDVDEIKATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTAL 1159
Query: 3128 KLTGTEAXXXXXXXXXXXXREKLMPLVFIYYDS*DVIVKAKN 3253
EA EK +P + + D+ VIVK +
Sbjct: 1160 DTATVEAEWLRDLLMDLPVVEKPVPAILMNCDNQTVIVKVNS 1201
Score = 87.0 bits (214), Expect(4) = 5e-72
Identities = 40/87 (45%), Positives = 56/87 (64%)
Frame = +1
Query: 2245 NISDKVINWTT*ENIHMEQSDRCAVLGQENKVCRLVKFLYGLK*ASK*WHEKLDYVVKSS 2424
++ +N E I+M+Q D V GQE KVC+L+K LYGLK A K WHEK D + S+
Sbjct: 864 DVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSA 923
Query: 2425 GYIFNDCDRCVYNKFNGKTGVIICLFI 2505
G+ N+ D+CVY + G GVI+CL++
Sbjct: 924 GFAVNEADKCVYYRHGGGEGVILCLYV 950
Score = 76.3 bits (186), Expect(4) = 5e-72
Identities = 35/80 (43%), Positives = 53/80 (66%)
Frame = +3
Query: 2505 MLILRTNLKIVEETKSFPNSKFEKKDL*EVDVMLGIKIVRKDEGFVLSQSHYVEKVLKKF 2684
+LI TNL+++ E KSF + F+ KDL D++L IK++R + G L QSHYVEK+L +F
Sbjct: 953 ILIFGTNLEVINEVKSFLSQNFDMKDLGVADIILNIKLIRGENGITLLQSHYVEKILNRF 1012
Query: 2685 RYFESISILIPLDPNMKLKR 2744
Y +S P DP++ L++
Sbjct: 1013 GYIDSKPSPTPYDPSLLLRK 1032
Score = 42.4 bits (98), Expect(4) = 5e-72
Identities = 19/55 (34%), Positives = 33/55 (60%)
Frame = +1
Query: 3283 RHIHLRHNVVQQLLRGGVIVIDFVRSESNLTDLLTNQLTKGLISKSSRRIRLMPM 3447
RH+ R V++L GVI +D++++ NL D T L++ +I +S+ + L PM
Sbjct: 1210 RHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTKGLSRNVIDNASKEMGLRPM 1264
>emb|CAE01299.2| OSJNBa0020P07.16 [Oryza sativa Japonica Group]
Length = 1314
Score = 140 bits (354), Expect(4) = 8e-72
Identities = 76/162 (46%), Positives = 98/162 (60%)
Frame = +2
Query: 2768 QKEYVRIIGSLMYLINNTHPDIIFVAVVLSRFTSNLSRDH*IALVRIFRYLRGTIDMGFH 2947
Q EY +IIGSLMYL + T PDI F LSRFTSN DH AL R+ RYL+GT+++G H
Sbjct: 1050 QLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLH 1109
Query: 2948 FSGSSNVLEVYSNAN*ISKFDESKSTSSYIFILGGGIIPWKSSKQTCMAKSTMELEFITL 3127
++G VLE YS++N IS DE K+TS Y+F LGGG + W+S KQT + +STME E L
Sbjct: 1110 YTGYPAVLEGYSDSNWISDVDEIKATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTAL 1169
Query: 3128 KLTGTEAXXXXXXXXXXXXREKLMPLVFIYYDS*DVIVKAKN 3253
EA EK +P + + D+ VIVK +
Sbjct: 1170 DTATVEAEWLRDLLMDLPVVEKPVPAILMNCDNQTVIVKVNS 1211
Score = 85.9 bits (211), Expect(4) = 8e-72
Identities = 40/87 (45%), Positives = 56/87 (64%)
Frame = +1
Query: 2245 NISDKVINWTT*ENIHMEQSDRCAVLGQENKVCRLVKFLYGLK*ASK*WHEKLDYVVKSS 2424
++ +N E I+M+Q D V GQE KVC+L+K LYGLK A K WHEK D + S+
Sbjct: 874 DVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSA 933
Query: 2425 GYIFNDCDRCVYNKFNGKTGVIICLFI 2505
G+ N+ D+CVY + G GVI+CL++
Sbjct: 934 GFGVNEADKCVYYRHGGGEGVILCLYV 960
Score = 76.6 bits (187), Expect(4) = 8e-72
Identities = 36/80 (45%), Positives = 53/80 (66%)
Frame = +3
Query: 2505 MLILRTNLKIVEETKSFPNSKFEKKDL*EVDVMLGIKIVRKDEGFVLSQSHYVEKVLKKF 2684
+LI TNL+++ E KSF + F+ KDL DV+L IK++R + G L QSHYVEK+L +F
Sbjct: 963 ILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRF 1022
Query: 2685 RYFESISILIPLDPNMKLKR 2744
Y +S P DP++ L++
Sbjct: 1023 GYIDSKPSPTPYDPSLLLRK 1042
Score = 40.8 bits (94), Expect(4) = 8e-72
Identities = 18/55 (32%), Positives = 33/55 (60%)
Frame = +1
Query: 3283 RHIHLRHNVVQQLLRGGVIVIDFVRSESNLTDLLTNQLTKGLISKSSRRIRLMPM 3447
RH+ R V++L GVI +D++++ NL D T L++ +I +S+ + L P+
Sbjct: 1220 RHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTKGLSRNVIDNASKEMGLRPI 1274
>gb|AAN61480.1| Putative polyprotein from transposon TNT [Oryza sativa Japonica
Group]
Length = 1911
Score = 142 bits (359), Expect(4) = 1e-71
Identities = 77/162 (47%), Positives = 98/162 (60%)
Frame = +2
Query: 2768 QKEYVRIIGSLMYLINNTHPDIIFVAVVLSRFTSNLSRDH*IALVRIFRYLRGTIDMGFH 2947
Q EY +IIGSLMYL + T PDI F LSRFTSN DH AL R+ RYL+GT+++G H
Sbjct: 1078 QLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLH 1137
Query: 2948 FSGSSNVLEVYSNAN*ISKFDESKSTSSYIFILGGGIIPWKSSKQTCMAKSTMELEFITL 3127
++G VLE YS++N IS DE K+TS Y+F LGGG + W+S KQT + +STME E L
Sbjct: 1138 YTGYPAVLEGYSDSNWISDVDEIKATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTAL 1197
Query: 3128 KLTGTEAXXXXXXXXXXXXREKLMPLVFIYYDS*DVIVKAKN 3253
EA EK +P + + D+ VIVK N
Sbjct: 1198 DTATVEAEWLRDLLMDLPVVEKPVPAILMNCDNQTVIVKVNN 1239
Score = 83.6 bits (205), Expect(4) = 1e-71
Identities = 38/87 (43%), Positives = 55/87 (63%)
Frame = +1
Query: 2245 NISDKVINWTT*ENIHMEQSDRCAVLGQENKVCRLVKFLYGLK*ASK*WHEKLDYVVKSS 2424
++ +N E I+M+Q D + GQE KVC+L+K LYGLK A K WHEK D + +
Sbjct: 902 DVKTAFLNGELDEEIYMDQPDGFVLEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTFA 961
Query: 2425 GYIFNDCDRCVYNKFNGKTGVIICLFI 2505
G+ N+ D+CVY + G GVI+CL++
Sbjct: 962 GFAVNEADKCVYYRHGGGEGVILCLYV 988
Score = 76.6 bits (187), Expect(4) = 1e-71
Identities = 35/80 (43%), Positives = 53/80 (66%)
Frame = +3
Query: 2505 MLILRTNLKIVEETKSFPNSKFEKKDL*EVDVMLGIKIVRKDEGFVLSQSHYVEKVLKKF 2684
+LI TN++++ E KSF + F+ KDL DV+L IK++R + G L QSHYVEK+L +F
Sbjct: 991 ILIFGTNIEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRF 1050
Query: 2685 RYFESISILIPLDPNMKLKR 2744
Y +S P DP++ L++
Sbjct: 1051 GYIDSKPSPTPYDPSLSLRK 1070
Score = 40.8 bits (94), Expect(4) = 1e-71
Identities = 18/55 (32%), Positives = 33/55 (60%)
Frame = +1
Query: 3283 RHIHLRHNVVQQLLRGGVIVIDFVRSESNLTDLLTNQLTKGLISKSSRRIRLMPM 3447
RH+ R V++L GVI +D++++ NL D T L++ +I +S+ + L P+
Sbjct: 1248 RHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTKGLSRNVIDNASKEMGLRPI 1302