BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Aconitum23_contig00040186
         (587 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004659200.1| replication-associated polyprotein [Blackber...   134   4e-29
gb|AGC09141.1| Replicase [Garlic virus A]                             114   4e-23
gb|AGG13306.1| Replicase [Garlic virus X]                             114   5e-23
ref|NP_569126.1| replicase [Garlic virus A] gi|2826150|dbj|BAA61...   112   1e-22
ref|NP_659010.1| hypothetical protein GvEgp1 [Garlic virus E] gi...   111   2e-22
gb|AGC67029.1| replicase [Shallot virus X]                            110   4e-22
gb|AHA90833.1| replicase [Garlic virus D]                             110   7e-22
ref|NP_620648.1| replicase [Shallot virus X] gi|548840|sp|Q04575...   109   1e-21
gb|AHB33487.1| replicase [Garlic virus A]                             108   3e-21
gb|AGG13276.1| Replicase [Garlic virus A]                             107   3e-21
ref|YP_009110668.1| replicase [Garlic virus B] gi|721751202|gb|A...   107   4e-21
gb|AFV61767.1| replicase [Garlic virus X]                             106   1e-20
ref|NP_569132.1| replicase [Garlic virus C] gi|2826157|dbj|BAA61...   105   2e-20
ref|YP_008855206.1| replicase [Garlic virus D] gi|558868945|gb|A...   105   2e-20
gb|AGG13294.1| Replicase [Garlic virus C]                             104   3e-20
gb|AGG13300.1| Replicase [Garlic virus C]                             104   4e-20
gb|AEV51816.1| replicase, partial [Garlic virus C]                    102   1e-19
gb|ALK24278.1| replicase [Garlic virus D]                             101   2e-19
emb|CAC83699.1| RNA-dependent RNA-polymerase [Garlic virus X]         100   4e-19
ref|NP_044571.1| replicase [Garlic virus X] gi|1888529|gb|AAC588...   100   5e-19

>ref|YP_004659200.1| replication-associated polyprotein [Blackberry virus E]
            gi|336139487|gb|AEI17897.1| replication-associated
            polyprotein [Blackberry virus E]
          Length = 1499

 Score =  134 bits (336), Expect = 4e-29
 Identities = 83/196 (42%), Positives = 111/196 (56%), Gaps = 20/196 (10%)
 Frame = -2

Query: 529  LDEALFEPETEGCTTSDDYDASASRAEETSGRPNSVT--------VAPDTASPSPCKTSN 374
            + + ++ P  EG T+S  ++ +     E +G    +         +  D  +P+P     
Sbjct: 536  MSDRVYIPHGEG-TSSAPHNGTPEHGREHAGSDEHIQFGTIGEDDLLEDLLTPTPTSEVG 594

Query: 373  RLEPSTSHVAA----------AYPHLTPHQ-VDILVKHGFTNLKQQFSGTGAIEPIFENP 227
                ST+ V A          A  H  P + VDIL  HGFTNL QQFS  GAI+P+  N 
Sbjct: 595  TTN-STAQVQAPRAGPDPKANAEAHTLPKRTVDILRLHGFTNLNQQFSDVGAIQPVIYNT 653

Query: 226  RASNFCVAPPT-SRSQRIVDSMASSIHRRIYSYPIDNKRAAAYMSDVKNNLTGLVLPKLN 50
             A+N  +APP  S+  +++D+MA  + RR YSY +DNKRA AYMSDVKNNLTGLVLPKL+
Sbjct: 654  NAANLKLAPPPLSKLNKVLDTMAQKLQRRFYSYVLDNKRATAYMSDVKNNLTGLVLPKLD 713

Query: 49   RETLSAWVALCEHSTR 2
            R  LSAWV+L E S R
Sbjct: 714  RNILSAWVSLAECSKR 729


>gb|AGC09141.1| Replicase [Garlic virus A]
          Length = 1604

 Score =  114 bits (285), Expect = 4e-23
 Identities = 71/190 (37%), Positives = 101/190 (53%), Gaps = 8/190 (4%)
 Frame = -2

Query: 547  DSSFPDLDEALFEPETEGCTTSDDYDASASRAEETSGRPNSVTVAPDTASPSPCKTSNRL 368
            D+   DL+  + +  TE C   ++   +A   E  SG  +     P +    P      +
Sbjct: 613  DADSLDLESIMPDITTEPCPNPEEVSNAALTEENESGPHDQQNDTPISGITDPEADKAEV 672

Query: 367  EP---STSHVAAAYPHLTPHQ---VDILVKHGFTNLKQQFSGTGAIEPIFENPRASNF-- 212
                 S+  +  A P L P     VDIL  HGFT L+ Q  G   I+P++ N +      
Sbjct: 673  ADQATSSDQMQPARPRLEPLDHATVDILKLHGFTALQPQHDGADQIQPVYFNDKVKRHRQ 732

Query: 211  CVAPPTSRSQRIVDSMASSIHRRIYSYPIDNKRAAAYMSDVKNNLTGLVLPKLNRETLSA 32
              A     + +   ++A+S+HR +Y+Y I+NKRA AYMSDVKNNLTGLVLPKL+R+ LS+
Sbjct: 733  LEAKDLCATAKPFVTLAASLHRGVYNYKINNKRATAYMSDVKNNLTGLVLPKLDRDLLSS 792

Query: 31   WVALCEHSTR 2
            WVAL E +TR
Sbjct: 793  WVALAERTTR 802


>gb|AGG13306.1| Replicase [Garlic virus X]
          Length = 1543

 Score =  114 bits (284), Expect = 5e-23
 Identities = 78/200 (39%), Positives = 107/200 (53%), Gaps = 7/200 (3%)
 Frame = -2

Query: 580  HQATCAGAPEQDSSFPDLDEALFEPETEGCTTSDDYDASASRAEETSGRPNSVTVAP-DT 404
            HQ T       +   P+L+    E   E     D+ D + S  +E  G P++ T  P +T
Sbjct: 555  HQPTAEDLLPDEDDMPELESVPDEDSNE----DDNADLANSHTDEEEGAPSNNTNQPGET 610

Query: 403  ASP--SPCKTSNRLEPSTSHVAAAYPHLTPHQVDILVKHGFTNLKQQFSGTGAIEPIFEN 230
            A+   S  KT++R+E            L    V+IL  HGFTN K Q  G   I P+F N
Sbjct: 611  ANELESASKTTSRVE---------LVPLDSETVEILKLHGFTNHKPQHDGDFQISPVFYN 661

Query: 229  PRASNFCVAPP----TSRSQRIVDSMASSIHRRIYSYPIDNKRAAAYMSDVKNNLTGLVL 62
             +A+   + PP    T+  Q     MA ++ R  YSY +D KRA A+MSDVKNNLTGLVL
Sbjct: 662  RQAN---LLPPYDGITNSVQSSFIQMAQALKRNCYSYKLDAKRATAFMSDVKNNLTGLVL 718

Query: 61   PKLNRETLSAWVALCEHSTR 2
            PKL+R+ L++WVAL E++ R
Sbjct: 719  PKLDRDLLTSWVALSENAHR 738


>ref|NP_569126.1| replicase [Garlic virus A] gi|2826150|dbj|BAA61806.1| replicase
            [Garlic virus A]
          Length = 1625

 Score =  112 bits (280), Expect = 1e-22
 Identities = 67/177 (37%), Positives = 100/177 (56%), Gaps = 8/177 (4%)
 Frame = -2

Query: 508  PETEGCTTS---DDYDASASRAEETSGRPNSVTVAPDTASPSPCKTSNRLEPSTSHVAAA 338
            P+ EG  T+   + +D++    +    + + +            + +N+ + S +HV   
Sbjct: 648  PDPEGGDTAAATEQHDSAQPTLDPNDQQGDELNSGTADQDADEAEVTNQAD-SANHVRPT 706

Query: 337  YPHLTPHQ---VDILVKHGFTNLKQQFSGTGAIEPIFENPRASNF--CVAPPTSRSQRIV 173
             P L P     +DIL  HGFT L+ Q  GT  I+P++ N +        A     + +  
Sbjct: 707  RPRLEPLDQATIDILKLHGFTALQPQHDGTDQIQPVYFNDKVKYHRQLEAKDLCATAKPF 766

Query: 172  DSMASSIHRRIYSYPIDNKRAAAYMSDVKNNLTGLVLPKLNRETLSAWVALCEHSTR 2
             ++A+S+HR IY+Y I+NKRA AYMSDVKNNLTGLVLPKL+R+ LS+WVAL E +TR
Sbjct: 767  ITLATSLHRGIYNYRINNKRATAYMSDVKNNLTGLVLPKLDRDLLSSWVALAERTTR 823


>ref|NP_659010.1| hypothetical protein GvEgp1 [Garlic virus E]
            gi|18621091|emb|CAC83705.1| hypothetical protein [Garlic
            virus E]
          Length = 1557

 Score =  111 bits (278), Expect = 2e-22
 Identities = 79/208 (37%), Positives = 102/208 (49%), Gaps = 23/208 (11%)
 Frame = -2

Query: 556  PEQDSSFPDLDEALFE-PETEGCTTSDDYDAS-----------------ASRAEETSGRP 431
            P +    P  D+ LF+ P  E C    + DA                  A   E T   P
Sbjct: 545  PPESEGAPLEDDDLFDLPPLEDCADPVEADAQEHPDEVSVDLPSPDSDHAHTGERTLETP 604

Query: 430  -NSVTVAPDTASPSPC--KTSNRLEPSTSHVAAAYPHLTPHQVDILVKHGFTNLKQQFSG 260
             +SVT        S    +   R +PS          L    V++L  HGFTN + Q+ G
Sbjct: 605  EDSVTGEAQNCDGSRHIDEPEERGQPSKQTCKVELTPLDADTVELLKLHGFTNYRAQYDG 664

Query: 259  TGAIEPIFENPRASNFCV--APPTSRSQRIVDSMASSIHRRIYSYPIDNKRAAAYMSDVK 86
               I+PI+ NP A       A  T+  Q+ VD MA  + RR Y Y +D KRA A+MSDVK
Sbjct: 665  ESQIQPIYRNPHAHFLRQYDAQTTTHQQQFVD-MAHGLKRRCYGYKVDAKRATAFMSDVK 723

Query: 85   NNLTGLVLPKLNRETLSAWVALCEHSTR 2
            NNLTGLVLPKL+R+ LS+WVAL E++TR
Sbjct: 724  NNLTGLVLPKLDRDLLSSWVALAENATR 751


>gb|AGC67029.1| replicase [Shallot virus X]
          Length = 1719

 Score =  110 bits (276), Expect = 4e-22
 Identities = 68/160 (42%), Positives = 92/160 (57%), Gaps = 9/160 (5%)
 Frame = -2

Query: 454  AEETSGRPNSVTVAPDTASPSPCKTSNRLEPSTSHVAAAYPHLTPHQ---VDILVKHGFT 284
            AE      N+    P   S +  K   +  P+ S+  ++ P+L P     V+IL  HGFT
Sbjct: 751  AEPEKLNQNNACPKPSDPSNTSGKQHKKTRPAKSNEKSSSPNLEPLDAPTVEILKLHGFT 810

Query: 283  NLKQQFSGTGAIEPIFENP------RASNFCVAPPTSRSQRIVDSMASSIHRRIYSYPID 122
             L  Q  GT  I P++ N       +A    ++PP     R    +A+S+HR IY++ ID
Sbjct: 811  ALTPQHDGTCQIRPVYFNKDIHLRRKAVKTDMSPPA----RPFFDLATSLHRGIYTHKID 866

Query: 121  NKRAAAYMSDVKNNLTGLVLPKLNRETLSAWVALCEHSTR 2
            N+RA AYMSDVKNNLTGLVLPKL+R+ LS+WVAL E +TR
Sbjct: 867  NRRATAYMSDVKNNLTGLVLPKLDRDLLSSWVALAETTTR 906


>gb|AHA90833.1| replicase [Garlic virus D]
          Length = 1561

 Score =  110 bits (274), Expect = 7e-22
 Identities = 78/218 (35%), Positives = 103/218 (47%), Gaps = 33/218 (15%)
 Frame = -2

Query: 556  PEQDS----SFPDLDEALFE-PETEGCTTSDDY---------DASASRAEETSGRPNSVT 419
            PE+D+    + P  DE LF+ P  E C+   D          D +   +E  +  P + T
Sbjct: 538  PEEDAHKLDAQPSDDEDLFDLPPLESCSEHGDDRPQESLDADDGNIPNSEAWNETPETRT 597

Query: 418  VAPDTASPSPCK-----------------TSNRLEPSTSHVAAAYPH-LTPHQVDILVKH 293
             A +      C+                  S R E      A    H L    V++L  H
Sbjct: 598  EADEVDPRESCRDREKDHVNNCDGSRTEHNSERGEKPDKPAAKVKLHPLDDDTVELLKIH 657

Query: 292  GFTNLKQQFSGTGAIEPIFENPRASNFCVAPPTS-RSQRIVDSMASSIHRRIYSYPIDNK 116
            GFTN + Q+ G   I+PIF NP          T+   QR    MA  + R+ Y Y I+ K
Sbjct: 658  GFTNYRAQYDGEDQIQPIFRNPNTRTLTQFTTTAPEPQRCFIEMAHGLKRQCYEYRINAK 717

Query: 115  RAAAYMSDVKNNLTGLVLPKLNRETLSAWVALCEHSTR 2
            RA A+MSDVKNNLTGLVLPKL R+ LS+WV+L EH+TR
Sbjct: 718  RATAFMSDVKNNLTGLVLPKLERDLLSSWVSLAEHATR 755


>ref|NP_620648.1| replicase [Shallot virus X] gi|548840|sp|Q04575.1|RDRP_SHVX RecName:
            Full=RNA replication protein; AltName: Full=194 kDa
            protein; Includes: RecName: Full=RNA-directed RNA
            polymerase; Includes: RecName: Full=Helicase
            gi|295079|gb|AAA47787.1| replicase [Shallot virus X]
          Length = 1718

 Score =  109 bits (272), Expect = 1e-21
 Identities = 67/160 (41%), Positives = 91/160 (56%), Gaps = 9/160 (5%)
 Frame = -2

Query: 454  AEETSGRPNSVTVAPDTASPSPCKTSNRLEPSTSHVAAAYPHLTPHQ---VDILVKHGFT 284
            AE      N+    P   S +  K   +  P+  +  ++ P+L P     V+IL  HGFT
Sbjct: 751  AEPEKLNQNNACPKPSDPSNASGKQHKKTHPAKGNEKSSSPNLEPLDAPTVEILKLHGFT 810

Query: 283  NLKQQFSGTGAIEPIFENP------RASNFCVAPPTSRSQRIVDSMASSIHRRIYSYPID 122
             L  Q  GT  I P++ N       +A    ++PP     R    +A+S+HR IY++ ID
Sbjct: 811  ALTPQHDGTCQIRPVYFNKDIHLRRKAVKTDMSPPA----RPFFDLATSLHRGIYTHKID 866

Query: 121  NKRAAAYMSDVKNNLTGLVLPKLNRETLSAWVALCEHSTR 2
            N+RA AYMSDVKNNLTGLVLPKL+R+ LS+WVAL E +TR
Sbjct: 867  NRRATAYMSDVKNNLTGLVLPKLDRDLLSSWVALAETTTR 906


>gb|AHB33487.1| replicase [Garlic virus A]
          Length = 1612

 Score =  108 bits (269), Expect = 3e-21
 Identities = 76/201 (37%), Positives = 108/201 (53%), Gaps = 17/201 (8%)
 Frame = -2

Query: 553  EQDSSFPDLDEALFEPETE---GCTTSDDYDASASRAEETSG-RPNS-------VTVAPD 407
            E+ S+   LD   F P+ +   G +   + D       ET+   PNS        T+   
Sbjct: 612  EEASNLDPLDLEDFAPDIDIDSGTSPEQNADVETPGTHETAQFSPNSNAHQDGAATLEDA 671

Query: 406  TASPSPCKTSNRLEPSTSHVAAAYPHLTPHQ---VDILVKHGFTNLKQQFSGTGAIEPIF 236
              +    +T+ + E +  H  AA P L P     +DIL  HGFT L+ Q  GT  I+P++
Sbjct: 672  HQNIDKGETTAQTEEN-DHKQAARPKLEPLDQATIDILKLHGFTALQPQHDGTDQIQPVY 730

Query: 235  ENPRAS---NFCVAPPTSRSQRIVDSMASSIHRRIYSYPIDNKRAAAYMSDVKNNLTGLV 65
             N +             S +   + ++A+S+HR +Y+Y I+NKRA AYMSDVKNNLTGLV
Sbjct: 731  FNEKIKCHRRLETKDLCSTASPFI-TLAASLHRGVYNYRINNKRATAYMSDVKNNLTGLV 789

Query: 64   LPKLNRETLSAWVALCEHSTR 2
            LPKL+R+ LS+WVAL E +TR
Sbjct: 790  LPKLDRDLLSSWVALAERTTR 810


>gb|AGG13276.1| Replicase [Garlic virus A]
          Length = 1600

 Score =  107 bits (268), Expect = 3e-21
 Identities = 69/173 (39%), Positives = 95/173 (54%), Gaps = 16/173 (9%)
 Frame = -2

Query: 472  DASASRAEETSGRPNSVTVAPDTASPSPCKTSNRLEPSTSHVAAAYPH--------LTPH 317
            D ++S+  E +G   + T+  + A P     +N  E  T     A PH        L   
Sbjct: 631  DTASSKLPEANGIGETTTMNSEHARPE----ANDAETETRVGEGARPHSARPKLEPLDQE 686

Query: 316  QVDILVKHGFTNLKQQFSGTGAIEPIFENPRA--------SNFCVAPPTSRSQRIVDSMA 161
             +DIL  HGFT L+ Q  G   I+P++ N +         +  C   PT++      ++A
Sbjct: 687  TIDILKLHGFTALQPQHDGAEQIQPVYFNSKVKTHRRLEVNELC---PTAQP---FATLA 740

Query: 160  SSIHRRIYSYPIDNKRAAAYMSDVKNNLTGLVLPKLNRETLSAWVALCEHSTR 2
            +SI R +Y+Y + NKRA AYMSDVKNNLTGLVLPKL+RE LS+WVAL E +TR
Sbjct: 741  ASIRRGVYNYKLCNKRATAYMSDVKNNLTGLVLPKLDRELLSSWVALAERTTR 793


>ref|YP_009110668.1| replicase [Garlic virus B] gi|721751202|gb|AIX10975.1| replicase
            [Garlic virus B]
          Length = 1531

 Score =  107 bits (267), Expect = 4e-21
 Identities = 70/185 (37%), Positives = 95/185 (51%), Gaps = 2/185 (1%)
 Frame = -2

Query: 550  QDSSFPDLDEALFEPETEGCTTSDDYDASASRAEETSGRPNSVTVAPDTASPSPCKTSNR 371
            QD   PD D+    PE E      D +   +  E     P +     D    S    ++ 
Sbjct: 547  QDDLLPDEDDL---PELESVPGELDTENPEAALESDETEPTAKAEDDDDGESSEDAQTSS 603

Query: 370  LEPSTSHVAAAYPHLTPHQVDILVKHGFTNLKQQFSGTGAIEPIFENPRASNFCVAPP-- 197
             +P T+   A  P L    +DIL  HGFTN K Q  G   I P+F N +A    +     
Sbjct: 604  SKPETTPGVALEP-LDDETIDILKMHGFTNYKPQHDGEFQIPPVFYNRQARFLPLHEGIV 662

Query: 196  TSRSQRIVDSMASSIHRRIYSYPIDNKRAAAYMSDVKNNLTGLVLPKLNRETLSAWVALC 17
             +   R +D MA ++ R  Y+Y +D KRA A+MSDVKNNLTGLVLPKL+R+ L++WVAL 
Sbjct: 663  NTAQSRFLD-MAQALKRNCYNYRLDAKRATAFMSDVKNNLTGLVLPKLDRDLLTSWVALA 721

Query: 16   EHSTR 2
            E++ R
Sbjct: 722  ENAKR 726


>gb|AFV61767.1| replicase [Garlic virus X]
          Length = 1544

 Score =  106 bits (264), Expect = 1e-20
 Identities = 71/198 (35%), Positives = 101/198 (51%), Gaps = 4/198 (2%)
 Frame = -2

Query: 583  SHQATCAGAPEQDSSFPDLDEALFEPETEGCTTSDDYDASASRAEETSGRPNSVTVAPDT 404
            +H  T      QD   PD+ +    PE E  + +D+   +    +  + + +      DT
Sbjct: 549  THPETNLSQTIQDDMLPDVSDL---PELE--SIADEQGDAEDNEDSANDQADHCNTTHDT 603

Query: 403  ASPSPCKTSNRLEPSTSHVAAAYPHLTP---HQVDILVKHGFTNLKQQFSGTGAIEPIFE 233
             +  P  T   +E S    +     LTP     V+IL  HGFTN K Q  G   I P+F 
Sbjct: 604  ETDKPATTPVEVESSPKITSRV--DLTPLDSDTVEILKLHGFTNYKPQHDGDFQIAPVFY 661

Query: 232  NPRASNFCVAPPTSRS-QRIVDSMASSIHRRIYSYPIDNKRAAAYMSDVKNNLTGLVLPK 56
            N +A    +    + S Q     MA ++ R  Y+Y +D KRA A+MSDVKNNLTGLVLPK
Sbjct: 662  NHQACQLPLYDGITNSVQSKFIEMAHALKRNCYNYTLDAKRATAFMSDVKNNLTGLVLPK 721

Query: 55   LNRETLSAWVALCEHSTR 2
            L+R+ L++WVAL E++ R
Sbjct: 722  LDRDLLTSWVALSENACR 739


>ref|NP_569132.1| replicase [Garlic virus C] gi|2826157|dbj|BAA61818.1| replicase
            [Garlic virus C]
          Length = 1550

 Score =  105 bits (262), Expect = 2e-20
 Identities = 74/197 (37%), Positives = 101/197 (51%), Gaps = 16/197 (8%)
 Frame = -2

Query: 544  SSFPDLDEALFEPETEGCTTSDDYD----ASASRAEETSGRPNSV---------TVAPDT 404
            +  PDL+E   EP+    T +   D    +SA +  +T     S+         T+  +T
Sbjct: 554  ADLPDLEEVEEEPDAAHTTQTPTPDVTDESSAVQHTQTPHIAESLVDSDVFVGETIDDET 613

Query: 403  ASPSPCKTSNRLEPSTSHVAAAYPHLTPHQVDILVKHGFTNLKQQFSGTGAIEPIFENPR 224
              P         E S S   A  P      ++IL  HGFTNLK Q  G   I P+F N  
Sbjct: 614  QQPDTVPAVQTRENSRSTTVALEP-FDEETIEILKIHGFTNLKPQHDGEFQIAPVFYNRL 672

Query: 223  ASNFCV---APPTSRSQRIVDSMASSIHRRIYSYPIDNKRAAAYMSDVKNNLTGLVLPKL 53
            A +         T++SQ I  +MA ++ R  Y Y +D KRA A+MSDVKNNLTGLVLPKL
Sbjct: 673  AKHIPTYEGITTTTQSQFI--AMAQALKRNCYRYKLDAKRATAFMSDVKNNLTGLVLPKL 730

Query: 52   NRETLSAWVALCEHSTR 2
            +R+ L++WVAL E++ R
Sbjct: 731  DRDLLTSWVALAENAKR 747


>ref|YP_008855206.1| replicase [Garlic virus D] gi|558868945|gb|AHA93785.1| replicase
            [Garlic virus D]
          Length = 1562

 Score =  105 bits (261), Expect = 2e-20
 Identities = 80/213 (37%), Positives = 100/213 (46%), Gaps = 29/213 (13%)
 Frame = -2

Query: 553  EQDSSFPDLDEALFE-PETEGCTTSDDYDASASRAEETSGRPN--------SVTVAPDTA 401
            EQD+   D DE LF+ P  E C+   D         +    PN           V PD  
Sbjct: 545  EQDAPLSD-DEDLFDLPPLENCSECGDDSTQKLPDGDDCDMPNIDEENEATETKVEPDGI 603

Query: 400  SPS-PCKTSNR----------LEPSTSHV-----AAAYPHLTP---HQVDILVKHGFTNL 278
            SP  P + S +           E S  H        A   L P     V++L  HGFTN 
Sbjct: 604  SPQEPHEDSEKGYVNNCDGSQTEHSPEHEDKPDKPVAKVKLNPLDDDTVELLKIHGFTNF 663

Query: 277  KQQFSGTGAIEPIFENPRASNFCVAPPT-SRSQRIVDSMASSIHRRIYSYPIDNKRAAAY 101
            + Q+ G   I+PIF N  A        T +  Q+    MA  + R  Y Y I+ KRA A+
Sbjct: 664  RAQYDGEDQIQPIFRNANAKFLTQYTTTVAGPQQCFIDMAHGLRRNCYEYRINAKRATAF 723

Query: 100  MSDVKNNLTGLVLPKLNRETLSAWVALCEHSTR 2
            MSDVKNNLTGLVLPKL R+ LS+WV+L EH+TR
Sbjct: 724  MSDVKNNLTGLVLPKLERDLLSSWVSLAEHATR 756


>gb|AGG13294.1| Replicase [Garlic virus C]
          Length = 1529

 Score =  104 bits (260), Expect = 3e-20
 Identities = 74/192 (38%), Positives = 98/192 (51%), Gaps = 4/192 (2%)
 Frame = -2

Query: 565  AGAPEQDSSFPDLDEALFEPETEGCTTSDDYDASASRAEETSGRPNSVTVAPDTASP--S 392
            A  PE +   P+L+E   EP     + + +  A  S  E+ S        A   A P  S
Sbjct: 552  ADLPELEEIEPELEETQTEP-----SPAPEESADLSACEDVSFNEPVEPCAESAAEPRGS 606

Query: 391  PCKTSNRLEPSTSHVAAAYPHLTPHQVDILVKHGFTNLKQQFSGTGAIEPIFENPRASNF 212
               T  +LEP           L    V+IL  HGFTNLK Q  G   I P+F N +A + 
Sbjct: 607  DKLTKVKLEP-----------LDEETVEILKIHGFTNLKPQHDGQFQISPVFYNRQARHL 655

Query: 211  --CVAPPTSRSQRIVDSMASSIHRRIYSYPIDNKRAAAYMSDVKNNLTGLVLPKLNRETL 38
                   T+     +D MA ++ R  Y Y +D KRA A+MSDVKNNLTGLVLPKL+R+ L
Sbjct: 656  PHYDGIVTTTQSHFID-MARALKRSCYRYRLDAKRATAFMSDVKNNLTGLVLPKLDRDLL 714

Query: 37   SAWVALCEHSTR 2
            ++WVAL E++ R
Sbjct: 715  ASWVALAENAKR 726


>gb|AGG13300.1| Replicase [Garlic virus C]
          Length = 1550

 Score =  104 bits (259), Expect = 4e-20
 Identities = 74/197 (37%), Positives = 100/197 (50%), Gaps = 16/197 (8%)
 Frame = -2

Query: 544  SSFPDLDEALFEPETEGCTTSDDYDA----SASRAEETSGRPNSV---------TVAPDT 404
            +  PDL+E   EP+    T +   D     SA +  +T     S+         T+  +T
Sbjct: 554  ADLPDLEEVEEEPDAAHTTQTPTPDVTDELSAVQHTQTPHVAESLVDSDVFVGETIDDET 613

Query: 403  ASPSPCKTSNRLEPSTSHVAAAYPHLTPHQVDILVKHGFTNLKQQFSGTGAIEPIFENPR 224
              P         E S S   A  P      ++IL  HGFTNLK Q  G   I P+F N  
Sbjct: 614  QQPDTVPAVQTRENSRSTKVALEP-FDEETIEILKIHGFTNLKPQHDGEFQIAPVFYNRL 672

Query: 223  ASNFCV---APPTSRSQRIVDSMASSIHRRIYSYPIDNKRAAAYMSDVKNNLTGLVLPKL 53
            A +         T++SQ I  +MA ++ R  Y Y +D KRA A+MSDVKNNLTGLVLPKL
Sbjct: 673  AKHIPTYEGITTTTQSQFI--AMAQALKRNCYRYKLDAKRATAFMSDVKNNLTGLVLPKL 730

Query: 52   NRETLSAWVALCEHSTR 2
            +R+ L++WVAL E++ R
Sbjct: 731  DRDLLTSWVALAENAKR 747


>gb|AEV51816.1| replicase, partial [Garlic virus C]
          Length = 1352

 Score =  102 bits (254), Expect = 1e-19
 Identities = 71/185 (38%), Positives = 96/185 (51%), Gaps = 3/185 (1%)
 Frame = -2

Query: 547 DSSFPDLDEALFEPETEGCTTSDDYDASASRAEETSGRPNSVTVAPDTASPSPC-KTSNR 371
           ++  P+L+E   EPE E   T        S A E S   ++        S  PC +++  
Sbjct: 374 EADLPELEEV--EPELEETQTEP------SPAPEESADLSACEDVSFNESVEPCAESAAE 425

Query: 370 LEPSTSHVAAAYPHLTPHQVDILVKHGFTNLKQQFSGTGAIEPIFENPRASNF--CVAPP 197
           L  S          L    V+IL  HGFTNLK Q  G   I P+F N +A +        
Sbjct: 426 LRGSDKLTKVKLEPLDEETVEILKIHGFTNLKPQHDGQFQISPVFYNRQARHLPHYDGIV 485

Query: 196 TSRSQRIVDSMASSIHRRIYSYPIDNKRAAAYMSDVKNNLTGLVLPKLNRETLSAWVALC 17
           T+     +D MA ++ R  Y Y +D KRA A+MSDVKNNLTGLVLPKL+R+ L++WVAL 
Sbjct: 486 TTTQSHFID-MARALKRSCYRYRLDAKRATAFMSDVKNNLTGLVLPKLDRDLLASWVALA 544

Query: 16  EHSTR 2
           E++ R
Sbjct: 545 ENAKR 549


>gb|ALK24278.1| replicase [Garlic virus D]
          Length = 1562

 Score =  101 bits (252), Expect = 2e-19
 Identities = 54/105 (51%), Positives = 67/105 (63%), Gaps = 1/105 (0%)
 Frame = -2

Query: 313 VDILVKHGFTNLKQQFSGTGAIEPIFENPRASNFCVAPPT-SRSQRIVDSMASSIHRRIY 137
           V++L  HGFTN K Q+ G   I+PIF N  A        T +  Q+    MA  + R  Y
Sbjct: 652 VELLKIHGFTNYKAQYDGEDQIQPIFRNANARFLTHYTTTVAGPQQCFIDMAHGLRRHCY 711

Query: 136 SYPIDNKRAAAYMSDVKNNLTGLVLPKLNRETLSAWVALCEHSTR 2
            Y I+ KRA A+MSDVKNNLTGLVLPKL R+ LS+WV+L EH+TR
Sbjct: 712 EYRINAKRATAFMSDVKNNLTGLVLPKLERDLLSSWVSLAEHATR 756


>emb|CAC83699.1| RNA-dependent RNA-polymerase [Garlic virus X]
          Length = 1544

 Score =  100 bits (250), Expect = 4e-19
 Identities = 68/198 (34%), Positives = 99/198 (50%), Gaps = 4/198 (2%)
 Frame = -2

Query: 583  SHQATCAGAPEQDSSFPDLDEALFEPETEGCTTSDDYDASASRAEETSGRPNSVTVAPDT 404
            +H  T       D   PD+ +    PE E  + +D+   +    +  + + +      D 
Sbjct: 549  THPETDLSQTINDDMLPDMSDL---PELE--SIADEQGDAEDNEDPANDQADHCNTTHDA 603

Query: 403  ASPSPCKTSNRLEPSTSHVAAAYPHLTP---HQVDILVKHGFTNLKQQFSGTGAIEPIFE 233
             +  P  T   +E S    +     LTP     V+IL  HGFTN K Q  G   I P+F 
Sbjct: 604  ETDKPATTPVEVESSPKITSRV--DLTPLDSDTVEILRLHGFTNYKPQHDGDFQIAPVFY 661

Query: 232  NPRASNFCVAPPTSRS-QRIVDSMASSIHRRIYSYPIDNKRAAAYMSDVKNNLTGLVLPK 56
            N +A    +    + S Q     MA ++ R  Y+Y +D +RA A+MSDVKNNLTGLVLPK
Sbjct: 662  NHQACQLPLYDGITNSVQSKFIEMAHALKRNCYNYTLDARRATAFMSDVKNNLTGLVLPK 721

Query: 55   LNRETLSAWVALCEHSTR 2
            L+R+ L++WVAL E++ R
Sbjct: 722  LDRDLLTSWVALSENACR 739


>ref|NP_044571.1| replicase [Garlic virus X] gi|1888529|gb|AAC58809.1| replicase
            [Garlic virus X]
          Length = 1543

 Score =  100 bits (249), Expect = 5e-19
 Identities = 66/186 (35%), Positives = 98/186 (52%), Gaps = 4/186 (2%)
 Frame = -2

Query: 547  DSSFPDLDEALFEPETEGCTTSDDYDASASRAEETSGRPNSVTVAPDTASPSPCKTSNRL 368
            +S  PDL+           + +D+   +    + T  + N      D  +    +T    
Sbjct: 567  ESDLPDLE-----------SVADEQSDAEDNGDSTIDQANLCNTTCDAETDKSAQTP--A 613

Query: 367  EPSTSHVAAAYPHLTP---HQVDILVKHGFTNLKQQFSGTGAIEPIFENPRASNFCVAPP 197
            E  +S  +A+   LTP     V+IL  HGFTN K Q  G   I P+F N +A N  +   
Sbjct: 614  EAKSSPKSASRVDLTPLDSDTVEILRLHGFTNYKPQHDGDFQIAPVFYNHQACNLPLYDG 673

Query: 196  -TSRSQRIVDSMASSIHRRIYSYPIDNKRAAAYMSDVKNNLTGLVLPKLNRETLSAWVAL 20
             T+ +Q     MA ++ R  Y+Y ++ +RA A+MSDVKNNLTGLVLPKL+R+ L++WVAL
Sbjct: 674  ITNSAQSKFIEMAHALKRNCYNYILEPRRATAFMSDVKNNLTGLVLPKLDRDLLTSWVAL 733

Query: 19   CEHSTR 2
             E++ R
Sbjct: 734  SENACR 739