BLASTX nr result

ID: Aconitum23_contig00037321 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Aconitum23_contig00037321
         (409 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_007761644.1| reverse transcriptase [Rose yellow vein viru...    82   1e-13
ref|NP_659397.1| hypothetical protein [Mirabilis mosaic virus] g...    57   4e-06

>ref|YP_007761644.1| reverse transcriptase [Rose yellow vein virus]
           gi|397559412|gb|AFO54491.1| reverse transcriptase [Rose
           yellow vein virus]
          Length = 819

 Score = 82.4 bits (202), Expect = 1e-13
 Identities = 38/104 (36%), Positives = 66/104 (63%)
 Frame = +3

Query: 3   VNVVQFIDVSFDFQGNEPYSLSALFDTGCSLLLAKEEVFPPEVWIDGPPKTLVNANQTKD 182
           ++ +++ID+ F  +G   Y + + +DTG SL+LA+  +FPPE+WI   PK +  ANQ+  
Sbjct: 181 LSTLRYIDLEFQLEGYSEYRIRSFYDTGASLMLARYHIFPPELWIKQTPKLVSYANQSTG 240

Query: 183 TINKVARKVSFEIGGHVVCGMDFWQCNVISPDVILGNNLFLFLQ 314
           +I   A +V F++ G+     DFW  + +S D+I+GN  +++LQ
Sbjct: 241 SIMYKAVQVPFKL-GYKTYSFDFWCHDAMSHDIIVGNPFWIYLQ 283


>ref|NP_659397.1| hypothetical protein [Mirabilis mosaic virus]
           gi|21427196|gb|AAM53128.1| ORFV [Mirabilis mosaic virus]
          Length = 674

 Score = 57.4 bits (137), Expect = 4e-06
 Identities = 37/106 (34%), Positives = 52/106 (49%), Gaps = 1/106 (0%)
 Frame = +3

Query: 18  FIDVSFDFQGNEPYSLSALFDTGCSLLLAKEEVFPPEVWIDGPPKTLVN-ANQTKDTINK 194
           +I+    F+G +  SL    DTG SL LA + V P + W + P    V  ANQ+  T+NK
Sbjct: 30  YIEAKVKFKGYQTLSLHCYVDTGASLCLASKHVIPDDFWENAPRSIPVKIANQSSITLNK 89

Query: 195 VARKVSFEIGGHVVCGMDFWQCNVISPDVILGNNLFLFLQTLGPLV 332
           V R +   I G+       +Q      D++LGNN   F QT  P +
Sbjct: 90  VCRGLKINIAGNEFFIPTIYQ-QETGIDILLGNN---FCQTYQPFI 131


Top