BLASTX nr result
ID: Aconitum23_contig00018555
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Aconitum23_contig00018555
(343 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAY85206.1| RNA polymerase II second largest subunit, partial... 84 2e-24
gb|AAW22925.1| RNA polymerase II second largest subunit, partial... 84 2e-24
gb|AAY85233.1| RNA polymerase II second largest subunit, partial... 84 2e-24
gb|AAY89340.1| RNA polymerase II second largest subunit [Berberi... 84 5e-24
gb|AAY85190.1| RNA polymerase II second largest subunit, partial... 84 5e-24
ref|XP_006859038.1| PREDICTED: DNA-directed RNA polymerase II su... 82 6e-24
ref|XP_010242918.1| PREDICTED: DNA-directed RNA polymerase II su... 82 6e-24
gb|AAY85208.1| RNA polymerase II second largest subunit, partial... 82 6e-24
gb|AAY85223.1| RNA polymerase II second largest subunit, partial... 82 6e-24
gb|AAS86821.1| RNA polymerase II second largest subunit, partial... 82 6e-24
gb|AAW22924.1| RNA polymerase II second largest subunit, partial... 82 6e-24
gb|AAW22926.1| RNA polymerase II second largest subunit, partial... 82 6e-24
gb|AAC08937.1| RPB140 [Chloranthus spicatus] 82 6e-24
gb|AAW22922.1| RNA polymerase II second largest subunit, partial... 82 6e-24
gb|AAY85194.1| RNA polymerase II second largest subunit, partial... 83 6e-24
gb|AAY85212.1| RNA polymerase II second largest subunit, partial... 82 6e-24
gb|AAY85222.1| RNA polymerase II second largest subunit, partial... 82 6e-24
gb|AAS86835.1| RNA polymerase II second largest subunit, partial... 82 8e-24
gb|KMZ63282.1| DNA-directed RNA polymerase [Zostera marina] 82 1e-23
gb|AAY85235.1| RNA polymerase II second largest subunit, partial... 82 1e-23
>gb|AAY85206.1| RNA polymerase II second largest subunit, partial [Embothrium
coccineum]
Length = 706
Score = 83.6 bits (205), Expect(2) = 2e-24
Identities = 43/59 (72%), Positives = 46/59 (77%)
Frame = -2
Query: 270 LRQLRRQVDINTEIGVIRVIRLKEMRQYTDYGRCSRPLFIVDXXXXXXXXXXXRALQQR 94
LRQLRRQVD+NTE+GVIR IRLKE+R YTDYGRCSRPLFIVD RALQQR
Sbjct: 486 LRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVDKQRLLIKKKDVRALQQR 544
Score = 55.5 bits (132), Expect(2) = 2e-24
Identities = 24/25 (96%), Positives = 24/25 (96%)
Frame = -1
Query: 343 PQATKIFVNGCWVGIHYNPELLVKT 269
PQATKIFVNGCWVGIH NPELLVKT
Sbjct: 461 PQATKIFVNGCWVGIHRNPELLVKT 485
>gb|AAW22925.1| RNA polymerase II second largest subunit, partial [Asarum caudatum]
Length = 565
Score = 83.6 bits (205), Expect(2) = 2e-24
Identities = 43/62 (69%), Positives = 47/62 (75%)
Frame = -2
Query: 270 LRQLRRQVDINTEIGVIRVIRLKEMRQYTDYGRCSRPLFIVDXXXXXXXXXXXRALQQRI 91
LRQLRRQVD+NTE+GVIR IRLKE+R YTDYGRCSRPLFIV+ RALQQR
Sbjct: 74 LRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRALQQRE 133
Query: 90 MH 85
H
Sbjct: 134 TH 135
Score = 55.5 bits (132), Expect(2) = 2e-24
Identities = 24/25 (96%), Positives = 24/25 (96%)
Frame = -1
Query: 343 PQATKIFVNGCWVGIHYNPELLVKT 269
PQATKIFVNGCWVGIH NPELLVKT
Sbjct: 49 PQATKIFVNGCWVGIHRNPELLVKT 73
>gb|AAY85233.1| RNA polymerase II second largest subunit, partial [Sarcococca
hookeriana]
Length = 219
Score = 83.6 bits (205), Expect(2) = 2e-24
Identities = 42/59 (71%), Positives = 46/59 (77%)
Frame = -2
Query: 270 LRQLRRQVDINTEIGVIRVIRLKEMRQYTDYGRCSRPLFIVDXXXXXXXXXXXRALQQR 94
LRQLRRQVD+NTE+GVIR IRLKE+R YTDYGRCSRPLFIVD +ALQQR
Sbjct: 75 LRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVDKQRLLIRKKDIQALQQR 133
Score = 55.5 bits (132), Expect(2) = 2e-24
Identities = 24/25 (96%), Positives = 24/25 (96%)
Frame = -1
Query: 343 PQATKIFVNGCWVGIHYNPELLVKT 269
PQATKIFVNGCWVGIH NPELLVKT
Sbjct: 50 PQATKIFVNGCWVGIHRNPELLVKT 74
>gb|AAY89340.1| RNA polymerase II second largest subunit [Berberidopsis beckleri]
Length = 873
Score = 83.6 bits (205), Expect(2) = 5e-24
Identities = 42/62 (67%), Positives = 47/62 (75%)
Frame = -2
Query: 270 LRQLRRQVDINTEIGVIRVIRLKEMRQYTDYGRCSRPLFIVDXXXXXXXXXXXRALQQRI 91
LRQLRRQVD+NTE+GVIR IRLKE+R YTDYGRCSRPLFIV+ +ALQQR
Sbjct: 486 LRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRE 545
Query: 90 MH 85
H
Sbjct: 546 SH 547
Score = 54.3 bits (129), Expect(2) = 5e-24
Identities = 23/25 (92%), Positives = 24/25 (96%)
Frame = -1
Query: 343 PQATKIFVNGCWVGIHYNPELLVKT 269
PQATKIFVNGCWVGIH NP+LLVKT
Sbjct: 461 PQATKIFVNGCWVGIHRNPDLLVKT 485
>gb|AAY85190.1| RNA polymerase II second largest subunit, partial [Aextoxicon
punctatum]
Length = 873
Score = 83.6 bits (205), Expect(2) = 5e-24
Identities = 42/62 (67%), Positives = 47/62 (75%)
Frame = -2
Query: 270 LRQLRRQVDINTEIGVIRVIRLKEMRQYTDYGRCSRPLFIVDXXXXXXXXXXXRALQQRI 91
LRQLRRQVD+NTE+GVIR IRLKE+R YTDYGRCSRPLFIV+ +ALQQR
Sbjct: 486 LRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRE 545
Query: 90 MH 85
H
Sbjct: 546 SH 547
Score = 54.3 bits (129), Expect(2) = 5e-24
Identities = 23/25 (92%), Positives = 24/25 (96%)
Frame = -1
Query: 343 PQATKIFVNGCWVGIHYNPELLVKT 269
PQATKIFVNGCWVGIH NP+LLVKT
Sbjct: 461 PQATKIFVNGCWVGIHRNPDLLVKT 485
>ref|XP_006859038.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Amborella
trichopoda] gi|548863150|gb|ERN20505.1| hypothetical
protein AMTR_s00068p00181410 [Amborella trichopoda]
Length = 1190
Score = 82.0 bits (201), Expect(2) = 6e-24
Identities = 42/59 (71%), Positives = 46/59 (77%)
Frame = -2
Query: 270 LRQLRRQVDINTEIGVIRVIRLKEMRQYTDYGRCSRPLFIVDXXXXXXXXXXXRALQQR 94
LRQLRRQVD+NTE+GVIR IRLKE+R YTDYGRCSRPLFIV+ RALQQR
Sbjct: 586 LRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKSDIRALQQR 644
Score = 55.5 bits (132), Expect(2) = 6e-24
Identities = 24/25 (96%), Positives = 24/25 (96%)
Frame = -1
Query: 343 PQATKIFVNGCWVGIHYNPELLVKT 269
PQATKIFVNGCWVGIH NPELLVKT
Sbjct: 561 PQATKIFVNGCWVGIHRNPELLVKT 585
>ref|XP_010242918.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Nelumbo
nucifera]
Length = 1189
Score = 82.0 bits (201), Expect(2) = 6e-24
Identities = 42/59 (71%), Positives = 46/59 (77%)
Frame = -2
Query: 270 LRQLRRQVDINTEIGVIRVIRLKEMRQYTDYGRCSRPLFIVDXXXXXXXXXXXRALQQR 94
LRQLRRQVD+NTE+GVIR IRLKE+R YTDYGRCSRPLFIV+ RALQQR
Sbjct: 588 LRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRALQQR 646
Score = 55.5 bits (132), Expect(2) = 6e-24
Identities = 24/25 (96%), Positives = 24/25 (96%)
Frame = -1
Query: 343 PQATKIFVNGCWVGIHYNPELLVKT 269
PQATKIFVNGCWVGIH NPELLVKT
Sbjct: 563 PQATKIFVNGCWVGIHRNPELLVKT 587
>gb|AAY85208.1| RNA polymerase II second largest subunit, partial [Euptelea
polyandra]
Length = 874
Score = 82.0 bits (201), Expect(2) = 6e-24
Identities = 42/59 (71%), Positives = 46/59 (77%)
Frame = -2
Query: 270 LRQLRRQVDINTEIGVIRVIRLKEMRQYTDYGRCSRPLFIVDXXXXXXXXXXXRALQQR 94
LRQLRRQVD+NTE+GVIR IRLKE+R YTDYGRCSRPLFIV+ RALQQR
Sbjct: 486 LRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRALQQR 544
Score = 55.5 bits (132), Expect(2) = 6e-24
Identities = 24/25 (96%), Positives = 24/25 (96%)
Frame = -1
Query: 343 PQATKIFVNGCWVGIHYNPELLVKT 269
PQATKIFVNGCWVGIH NPELLVKT
Sbjct: 461 PQATKIFVNGCWVGIHRNPELLVKT 485
>gb|AAY85223.1| RNA polymerase II second largest subunit, partial [Nelumbo
nucifera]
Length = 865
Score = 82.0 bits (201), Expect(2) = 6e-24
Identities = 42/59 (71%), Positives = 46/59 (77%)
Frame = -2
Query: 270 LRQLRRQVDINTEIGVIRVIRLKEMRQYTDYGRCSRPLFIVDXXXXXXXXXXXRALQQR 94
LRQLRRQVD+NTE+GVIR IRLKE+R YTDYGRCSRPLFIV+ RALQQR
Sbjct: 478 LRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRALQQR 536
Score = 55.5 bits (132), Expect(2) = 6e-24
Identities = 24/25 (96%), Positives = 24/25 (96%)
Frame = -1
Query: 343 PQATKIFVNGCWVGIHYNPELLVKT 269
PQATKIFVNGCWVGIH NPELLVKT
Sbjct: 453 PQATKIFVNGCWVGIHRNPELLVKT 477
>gb|AAS86821.1| RNA polymerase II second largest subunit, partial [Akebia
longeracemosa]
Length = 575
Score = 82.0 bits (201), Expect(2) = 6e-24
Identities = 42/59 (71%), Positives = 46/59 (77%)
Frame = -2
Query: 270 LRQLRRQVDINTEIGVIRVIRLKEMRQYTDYGRCSRPLFIVDXXXXXXXXXXXRALQQR 94
LRQLRRQVD+NTE+GVIR IRLKE+R YTDYGRCSRPLFIV+ RALQQR
Sbjct: 75 LRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQQLLIKKKDIRALQQR 133
Score = 55.5 bits (132), Expect(2) = 6e-24
Identities = 24/25 (96%), Positives = 24/25 (96%)
Frame = -1
Query: 343 PQATKIFVNGCWVGIHYNPELLVKT 269
PQATKIFVNGCWVGIH NPELLVKT
Sbjct: 50 PQATKIFVNGCWVGIHRNPELLVKT 74
>gb|AAW22924.1| RNA polymerase II second largest subunit, partial [Drimys winteri]
Length = 565
Score = 82.0 bits (201), Expect(2) = 6e-24
Identities = 42/59 (71%), Positives = 46/59 (77%)
Frame = -2
Query: 270 LRQLRRQVDINTEIGVIRVIRLKEMRQYTDYGRCSRPLFIVDXXXXXXXXXXXRALQQR 94
LRQLRRQVD+NTE+GVIR IRLKE+R YTDYGRCSRPLFIV+ RALQQR
Sbjct: 74 LRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIRKKDIRALQQR 132
Score = 55.5 bits (132), Expect(2) = 6e-24
Identities = 24/25 (96%), Positives = 24/25 (96%)
Frame = -1
Query: 343 PQATKIFVNGCWVGIHYNPELLVKT 269
PQATKIFVNGCWVGIH NPELLVKT
Sbjct: 49 PQATKIFVNGCWVGIHRNPELLVKT 73
>gb|AAW22926.1| RNA polymerase II second largest subunit, partial [Illicium
anisatum]
Length = 539
Score = 82.0 bits (201), Expect(2) = 6e-24
Identities = 42/59 (71%), Positives = 46/59 (77%)
Frame = -2
Query: 270 LRQLRRQVDINTEIGVIRVIRLKEMRQYTDYGRCSRPLFIVDXXXXXXXXXXXRALQQR 94
LRQLRRQVD+NTE+GVIR IRLKE+R YTDYGRCSRPLFIV+ RALQQR
Sbjct: 67 LRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRALQQR 125
Score = 55.5 bits (132), Expect(2) = 6e-24
Identities = 24/25 (96%), Positives = 24/25 (96%)
Frame = -1
Query: 343 PQATKIFVNGCWVGIHYNPELLVKT 269
PQATKIFVNGCWVGIH NPELLVKT
Sbjct: 42 PQATKIFVNGCWVGIHRNPELLVKT 66
>gb|AAC08937.1| RPB140 [Chloranthus spicatus]
Length = 533
Score = 82.0 bits (201), Expect(2) = 6e-24
Identities = 42/59 (71%), Positives = 46/59 (77%)
Frame = -2
Query: 270 LRQLRRQVDINTEIGVIRVIRLKEMRQYTDYGRCSRPLFIVDXXXXXXXXXXXRALQQR 94
LRQLRRQVD+NTE+GVIR IRLKE+R YTDYGRCSRPLFIV+ RALQQR
Sbjct: 60 LRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRALQQR 118
Score = 55.5 bits (132), Expect(2) = 6e-24
Identities = 24/25 (96%), Positives = 24/25 (96%)
Frame = -1
Query: 343 PQATKIFVNGCWVGIHYNPELLVKT 269
PQATKIFVNGCWVGIH NPELLVKT
Sbjct: 35 PQATKIFVNGCWVGIHRNPELLVKT 59
>gb|AAW22922.1| RNA polymerase II second largest subunit, partial [Amborella
trichopoda]
Length = 516
Score = 82.0 bits (201), Expect(2) = 6e-24
Identities = 42/59 (71%), Positives = 46/59 (77%)
Frame = -2
Query: 270 LRQLRRQVDINTEIGVIRVIRLKEMRQYTDYGRCSRPLFIVDXXXXXXXXXXXRALQQR 94
LRQLRRQVD+NTE+GVIR IRLKE+R YTDYGRCSRPLFIV+ RALQQR
Sbjct: 49 LRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKSDIRALQQR 107
Score = 55.5 bits (132), Expect(2) = 6e-24
Identities = 24/25 (96%), Positives = 24/25 (96%)
Frame = -1
Query: 343 PQATKIFVNGCWVGIHYNPELLVKT 269
PQATKIFVNGCWVGIH NPELLVKT
Sbjct: 24 PQATKIFVNGCWVGIHRNPELLVKT 48
>gb|AAY85194.1| RNA polymerase II second largest subunit, partial [Buxus
sempervirens]
Length = 219
Score = 83.2 bits (204), Expect(2) = 6e-24
Identities = 43/59 (72%), Positives = 46/59 (77%)
Frame = -2
Query: 270 LRQLRRQVDINTEIGVIRVIRLKEMRQYTDYGRCSRPLFIVDXXXXXXXXXXXRALQQR 94
LRQLRRQVD+NTE+GVIR IRLKE+R YTDYGRCSRPLFIVD RALQQR
Sbjct: 75 LRQLRRQVDVNTEVGVIRDIRLKELRIYTDYGRCSRPLFIVDKQRLLIKKKDIRALQQR 133
Score = 54.3 bits (129), Expect(2) = 6e-24
Identities = 23/25 (92%), Positives = 24/25 (96%)
Frame = -1
Query: 343 PQATKIFVNGCWVGIHYNPELLVKT 269
PQATKIFVNGCWVGIH NP+LLVKT
Sbjct: 50 PQATKIFVNGCWVGIHRNPDLLVKT 74
>gb|AAY85212.1| RNA polymerase II second largest subunit, partial [Helleborus
orientalis]
Length = 219
Score = 82.0 bits (201), Expect(2) = 6e-24
Identities = 42/59 (71%), Positives = 46/59 (77%)
Frame = -2
Query: 270 LRQLRRQVDINTEIGVIRVIRLKEMRQYTDYGRCSRPLFIVDXXXXXXXXXXXRALQQR 94
LRQLRRQVD+NTE+GVIR IRLKE+R YTDYGRCSRPLFIV+ RALQQR
Sbjct: 75 LRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRALQQR 133
Score = 55.5 bits (132), Expect(2) = 6e-24
Identities = 24/25 (96%), Positives = 24/25 (96%)
Frame = -1
Query: 343 PQATKIFVNGCWVGIHYNPELLVKT 269
PQATKIFVNGCWVGIH NPELLVKT
Sbjct: 50 PQATKIFVNGCWVGIHRNPELLVKT 74
>gb|AAY85222.1| RNA polymerase II second largest subunit, partial [Nandina
domestica]
Length = 218
Score = 82.0 bits (201), Expect(2) = 6e-24
Identities = 42/59 (71%), Positives = 46/59 (77%)
Frame = -2
Query: 270 LRQLRRQVDINTEIGVIRVIRLKEMRQYTDYGRCSRPLFIVDXXXXXXXXXXXRALQQR 94
LRQLRRQVD+NTE+GVIR IRLKE+R YTDYGRCSRPLFIV+ RALQQR
Sbjct: 75 LRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRALQQR 133
Score = 55.5 bits (132), Expect(2) = 6e-24
Identities = 24/25 (96%), Positives = 24/25 (96%)
Frame = -1
Query: 343 PQATKIFVNGCWVGIHYNPELLVKT 269
PQATKIFVNGCWVGIH NPELLVKT
Sbjct: 50 PQATKIFVNGCWVGIHRNPELLVKT 74
>gb|AAS86835.1| RNA polymerase II second largest subunit, partial [Camellia
japonica]
Length = 591
Score = 81.6 bits (200), Expect(2) = 8e-24
Identities = 41/59 (69%), Positives = 44/59 (74%)
Frame = -2
Query: 270 LRQLRRQVDINTEIGVIRVIRLKEMRQYTDYGRCSRPLFIVDXXXXXXXXXXXRALQQR 94
LRQLRRQVD+NTE+GVIR IRLKE+R YTDYGRCSRPLFIVD LQQR
Sbjct: 94 LRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVDKQRLLIKKKDILILQQR 152
Score = 55.5 bits (132), Expect(2) = 8e-24
Identities = 24/25 (96%), Positives = 24/25 (96%)
Frame = -1
Query: 343 PQATKIFVNGCWVGIHYNPELLVKT 269
PQATKIFVNGCWVGIH NPELLVKT
Sbjct: 69 PQATKIFVNGCWVGIHRNPELLVKT 93
>gb|KMZ63282.1| DNA-directed RNA polymerase [Zostera marina]
Length = 1186
Score = 82.0 bits (201), Expect(2) = 1e-23
Identities = 42/59 (71%), Positives = 46/59 (77%)
Frame = -2
Query: 270 LRQLRRQVDINTEIGVIRVIRLKEMRQYTDYGRCSRPLFIVDXXXXXXXXXXXRALQQR 94
LRQLRRQVD+NTE+GVIR IRLKE+R YTDYGRCSRPLFIV+ RALQQR
Sbjct: 588 LRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVERQRLLIKKRDIRALQQR 646
Score = 54.3 bits (129), Expect(2) = 1e-23
Identities = 23/25 (92%), Positives = 24/25 (96%)
Frame = -1
Query: 343 PQATKIFVNGCWVGIHYNPELLVKT 269
PQATKIFVNGCWVGIH NP+LLVKT
Sbjct: 563 PQATKIFVNGCWVGIHRNPDLLVKT 587
>gb|AAY85235.1| RNA polymerase II second largest subunit, partial [Tetracentron
sinense]
Length = 951
Score = 82.0 bits (201), Expect(2) = 1e-23
Identities = 42/59 (71%), Positives = 46/59 (77%)
Frame = -2
Query: 270 LRQLRRQVDINTEIGVIRVIRLKEMRQYTDYGRCSRPLFIVDXXXXXXXXXXXRALQQR 94
LRQLRRQVD+NTE+GVIR IRLKE+R YTDYGRCSRPLFIV+ RALQQR
Sbjct: 486 LRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRALQQR 544
Score = 54.3 bits (129), Expect(2) = 1e-23
Identities = 23/25 (92%), Positives = 24/25 (96%)
Frame = -1
Query: 343 PQATKIFVNGCWVGIHYNPELLVKT 269
PQATKIFVNGCWVGIH NP+LLVKT
Sbjct: 461 PQATKIFVNGCWVGIHRNPDLLVKT 485