BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Aconitum23_contig00018039
         (1303 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_011084487.1| PREDICTED: RNA polymerase sigma factor sigE,...   269   3e-69
ref|XP_012090115.1| PREDICTED: RNA polymerase sigma factor sigE,...   266   2e-68
gb|KHG11410.1| RNA polymerase sigma factor rpoD [Gossypium arbor...   266   3e-68
ref|XP_002268709.1| PREDICTED: RNA polymerase sigma factor sigE,...   266   3e-68
gb|AKC88745.1| sigma factor [Melianthus villosus]                     265   6e-68
ref|XP_002513587.1| RNA polymerase sigma factor rpoD, putative [...   264   1e-67
ref|XP_007219010.1| hypothetical protein PRUPE_ppa004259mg [Prun...   264   1e-67
ref|XP_007219009.1| hypothetical protein PRUPE_ppa004259mg [Prun...   264   1e-67
ref|XP_012440029.1| PREDICTED: RNA polymerase sigma factor sigE,...   263   3e-67
gb|KJB52622.1| hypothetical protein B456_008G270500 [Gossypium r...   263   3e-67
ref|XP_008234778.1| PREDICTED: RNA polymerase sigma factor sigE,...   262   5e-67
ref|XP_004308009.1| PREDICTED: RNA polymerase sigma factor sigE,...   262   5e-67
ref|XP_008465379.1| PREDICTED: RNA polymerase sigma factor sigE,...   261   7e-67
ref|XP_010097858.1| RNA polymerase sigma factor rpoD [Morus nota...   261   9e-67
ref|XP_006593758.1| PREDICTED: RNA polymerase sigma factor sigE,...   261   9e-67
ref|XP_003541542.1| PREDICTED: RNA polymerase sigma factor sigE,...   261   9e-67
ref|XP_009601650.1| PREDICTED: RNA polymerase sigma factor sigE,...   261   1e-66
ref|XP_009785134.1| PREDICTED: RNA polymerase sigma factor sigE,...   260   2e-66
ref|XP_004234179.1| PREDICTED: RNA polymerase sigma factor sigE,...   260   2e-66
ref|XP_006350582.1| PREDICTED: RNA polymerase sigma factor sigE,...   259   3e-66

>ref|XP_011084487.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like [Sesamum indicum]
          Length = 518

 Score =  269 bits (688), Expect = 3e-69
 Identities = 139/201 (69%), Positives = 156/201 (77%), Gaps = 10/201 (4%)
 Frame = -2

Query: 1236 DVVRSNKKKVKRLGLSKRIAMXXXXXXXXXXXXXXXXXXR----------LVREYSSSTD 1087
            DVVRS +KK +RL L KRIA+                  R          LVR+YS+STD
Sbjct: 146  DVVRSKRKKERRLTLEKRIALKTNKEVDFLASSSQKRKQRKNDEDEKIDRLVRDYSASTD 205

Query: 1086 VVSMDWKKMKIPPVLPSSEHTWLFKLMQPMKALLQVKDDMRKSLGREVTDGELAAATNMN 907
            +VS+DWKKMKIPPVLPSSEH WLFKLMQPMKA+LQVK++++  LGREVTD ELA AT  N
Sbjct: 206  LVSLDWKKMKIPPVLPSSEHAWLFKLMQPMKAILQVKENLQNDLGREVTDDELAEATKTN 265

Query: 906  VPQLRKQMEVGRAARNKLIKHNLRLVLFVINKYFQEFAAGPRFQDLCQEGAKGLITAIDR 727
              QLRKQ+EVGRAARNKLIKHNLRLVLFV+NKYFQ+F+ GPRFQDLCQ G KGLITAIDR
Sbjct: 266  AVQLRKQLEVGRAARNKLIKHNLRLVLFVMNKYFQDFSNGPRFQDLCQAGVKGLITAIDR 325

Query: 726  FEPKRRFRLSTYGLFWIRHAI 664
            FEPKR+FRLSTY LFWIRHAI
Sbjct: 326  FEPKRKFRLSTYSLFWIRHAI 346



 Score =  192 bits (488), Expect = 5e-46
 Identities = 97/120 (80%), Positives = 103/120 (85%)
 Frame = -1

Query: 571 ERYREVMRASKPVISLHARHAVTQEEFISGITDVDGVGGDKKRQPAXXXXXXXXXXXXLK 392
           ERY EVMR SKP+ SLHARHAVTQEEFI+GI+DVD V GDK+RQPA            LK
Sbjct: 398 ERYHEVMRVSKPISSLHARHAVTQEEFINGISDVDDVEGDKRRQPALLRLALDDVLDSLK 457

Query: 391 PKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYIF 212
           PKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPAR+DYLRRYI+
Sbjct: 458 PKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPARIDYLRRYIY 517


>ref|XP_012090115.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Jatropha curcas]
            gi|643706039|gb|KDP22171.1| hypothetical protein
            JCGZ_26002 [Jatropha curcas]
          Length = 502

 Score =  266 bits (681), Expect = 2e-68
 Identities = 138/199 (69%), Positives = 152/199 (76%), Gaps = 9/199 (4%)
 Frame = -2

Query: 1233 VVRSNKKKVKRLGLSKRIAMXXXXXXXXXXXXXXXXXXR---------LVREYSSSTDVV 1081
            +VR+  KK KRL L  RIA+                            LVREYS+STD+V
Sbjct: 135  IVRNRAKKTKRLDLDTRIALRKNNEEEKITSTIRKKKDTRHENEKIEELVREYSASTDLV 194

Query: 1080 SMDWKKMKIPPVLPSSEHTWLFKLMQPMKALLQVKDDMRKSLGREVTDGELAAATNMNVP 901
            S+DWKKMKIPPVL S+EH WLFKLMQPMKALLQVKD ++ +LGRE T+GELA ATNM V 
Sbjct: 195  SLDWKKMKIPPVLHSTEHAWLFKLMQPMKALLQVKDHLQTNLGREPTEGELAEATNMKVE 254

Query: 900  QLRKQMEVGRAARNKLIKHNLRLVLFVINKYFQEFAAGPRFQDLCQEGAKGLITAIDRFE 721
            Q+RKQ+E GRAARNKLIKHNLRLVLFVINKYFQ+FA GPRFQDLCQ G KGLITAIDRFE
Sbjct: 255  QVRKQLEAGRAARNKLIKHNLRLVLFVINKYFQDFANGPRFQDLCQAGVKGLITAIDRFE 314

Query: 720  PKRRFRLSTYGLFWIRHAI 664
            PKRRFRLSTY LFWIRHAI
Sbjct: 315  PKRRFRLSTYSLFWIRHAI 333



 Score =  181 bits (458), Expect = 2e-42
 Identities = 92/119 (77%), Positives = 100/119 (84%)
 Frame = -1

Query: 571 ERYREVMRASKPVISLHARHAVTQEEFISGITDVDGVGGDKKRQPAXXXXXXXXXXXXLK 392
           ERY EVMRASKP+ SLH+RH VTQEEFI+GITD DG  GD +RQPA            LK
Sbjct: 385 ERYHEVMRASKPIYSLHSRHVVTQEEFINGITDTDG--GDNRRQPALLRLALDDVLDSLK 442

Query: 391 PKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYI 215
           PKES+VIRQRYGLDGKGDRTLGEIAGNLNISREMVRK+EVKAL+KLKHPARVDYLRRY+
Sbjct: 443 PKESVVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKYEVKALLKLKHPARVDYLRRYV 501


>gb|KHG11410.1| RNA polymerase sigma factor rpoD [Gossypium arboreum]
          Length = 516

 Score =  266 bits (680), Expect = 3e-68
 Identities = 135/198 (68%), Positives = 155/198 (78%), Gaps = 8/198 (4%)
 Frame = -2

Query: 1233 VVRSNKKKVKRLGLSKRIAMXXXXXXXXXXXXXXXXXXR--------LVREYSSSTDVVS 1078
            VVRS  KK +RLGL KRI +                           LVR+YS+STD+VS
Sbjct: 148  VVRSQTKKNRRLGLDKRIELKKNREEKSVVSGQSKKGISNESEKIDRLVRDYSASTDLVS 207

Query: 1077 MDWKKMKIPPVLPSSEHTWLFKLMQPMKALLQVKDDMRKSLGREVTDGELAAATNMNVPQ 898
            +DWKKMKIPPVLPS+EHTWLFKLMQPMKALL+ K++++K LGR+ T+ ELA ATN +  Q
Sbjct: 208  LDWKKMKIPPVLPSTEHTWLFKLMQPMKALLEAKENLQKDLGRDPTEDELAEATNSSAAQ 267

Query: 897  LRKQMEVGRAARNKLIKHNLRLVLFVINKYFQEFAAGPRFQDLCQEGAKGLITAIDRFEP 718
            +R+Q+EVGRAARNKLIKHNLRLVLFVINKYFQ+FA GPRFQDLCQ G KGLITAIDRFEP
Sbjct: 268  VRRQLEVGRAARNKLIKHNLRLVLFVINKYFQDFANGPRFQDLCQAGVKGLITAIDRFEP 327

Query: 717  KRRFRLSTYGLFWIRHAI 664
            +RRFRLSTYGLFWIRHAI
Sbjct: 328  RRRFRLSTYGLFWIRHAI 345



 Score =  196 bits (497), Expect = 5e-47
 Identities = 99/119 (83%), Positives = 104/119 (87%)
 Frame = -1

Query: 571 ERYREVMRASKPVISLHARHAVTQEEFISGITDVDGVGGDKKRQPAXXXXXXXXXXXXLK 392
           ERY+EVMRASKPV SLH RH+VTQEEFISGITDVDGVGGD +RQPA            LK
Sbjct: 397 ERYQEVMRASKPVASLHLRHSVTQEEFISGITDVDGVGGDHRRQPALLRLALDDVLDSLK 456

Query: 391 PKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYI 215
           PKESLVIRQRYGLDGKGDRTLGEI+GNLNISREMVRKHEVKALMKLKHPARVDYLRRY+
Sbjct: 457 PKESLVIRQRYGLDGKGDRTLGEISGNLNISREMVRKHEVKALMKLKHPARVDYLRRYV 515


>ref|XP_002268709.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Vitis vinifera]
            gi|302143685|emb|CBI22546.3| unnamed protein product
            [Vitis vinifera]
          Length = 518

 Score =  266 bits (680), Expect = 3e-68
 Identities = 138/201 (68%), Positives = 155/201 (77%), Gaps = 8/201 (3%)
 Frame = -2

Query: 1242 SYDVVRSNKKKVKRLGLSKRIAMXXXXXXXXXXXXXXXXXXR--------LVREYSSSTD 1087
            S +VVR + KK KRL L KRIA+                  +        LVREYS+STD
Sbjct: 147  SDNVVRIHNKKPKRLSLEKRIALSKMKQEKAVASIQKKRDSKNEDENIDVLVREYSASTD 206

Query: 1086 VVSMDWKKMKIPPVLPSSEHTWLFKLMQPMKALLQVKDDMRKSLGREVTDGELAAATNMN 907
            +VS+DWKKMKIPPVLP SEH WLFKLMQPMK LL+VKD+++K LGRE TDGELA A +M+
Sbjct: 207  LVSLDWKKMKIPPVLPPSEHAWLFKLMQPMKGLLEVKDNLQKDLGREPTDGELAEAMSMS 266

Query: 906  VPQLRKQMEVGRAARNKLIKHNLRLVLFVINKYFQEFAAGPRFQDLCQEGAKGLITAIDR 727
              Q+R+ MEVG+AARNKLIKHNLRLVLFVINKYFQEFA GP+FQDLCQ G KGLITAIDR
Sbjct: 267  AVQVRRHMEVGQAARNKLIKHNLRLVLFVINKYFQEFANGPKFQDLCQAGVKGLITAIDR 326

Query: 726  FEPKRRFRLSTYGLFWIRHAI 664
            FEPKR FRLSTYGLFWIRHAI
Sbjct: 327  FEPKRSFRLSTYGLFWIRHAI 347



 Score =  186 bits (472), Expect = 4e-44
 Identities = 95/120 (79%), Positives = 103/120 (85%)
 Frame = -1

Query: 571 ERYREVMRASKPVISLHARHAVTQEEFISGITDVDGVGGDKKRQPAXXXXXXXXXXXXLK 392
           ERY EVMRASK V+SLHARHA TQEE+I+GITDV+GVGGD+ RQ A            LK
Sbjct: 399 ERYHEVMRASKSVLSLHARHATTQEEYINGITDVEGVGGDRGRQLALLRLALDDVLDSLK 458

Query: 391 PKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYIF 212
           PKESLV+RQRYGLDGKGDRTLGEIAGNL+ISREMVRKHEVKALMKLKHPARVDYLR+YIF
Sbjct: 459 PKESLVMRQRYGLDGKGDRTLGEIAGNLSISREMVRKHEVKALMKLKHPARVDYLRQYIF 518


>gb|AKC88745.1| sigma factor [Melianthus villosus]
          Length = 513

 Score =  265 bits (677), Expect = 6e-68
 Identities = 137/198 (69%), Positives = 153/198 (77%), Gaps = 7/198 (3%)
 Frame = -2

Query: 1236 DVVRSNKKKVKRLGLSKRIAMXXXXXXXXXXXXXXXXXXR-------LVREYSSSTDVVS 1078
            +VVR+  KKVKRL L KR+A+                          LVREYSSSTD+ S
Sbjct: 145  NVVRNQTKKVKRLSLDKRVALIRHKEDVDVSRRRKTDHKNKSYNIEILVREYSSSTDMAS 204

Query: 1077 MDWKKMKIPPVLPSSEHTWLFKLMQPMKALLQVKDDMRKSLGREVTDGELAAATNMNVPQ 898
            +DWKKMKIPPVL SSEH+WLFKLMQPMK LL  K++++  LGRE TD ELA ATNMNV +
Sbjct: 205  LDWKKMKIPPVLSSSEHSWLFKLMQPMKGLLNFKENLKTDLGREPTDYELADATNMNVVK 264

Query: 897  LRKQMEVGRAARNKLIKHNLRLVLFVINKYFQEFAAGPRFQDLCQEGAKGLITAIDRFEP 718
            L+K+MEVGRAARNKLIKHNLRLVLFVINKYFQ+FA G RFQDLCQ G KGLITAIDRFEP
Sbjct: 265  LKKEMEVGRAARNKLIKHNLRLVLFVINKYFQDFANGSRFQDLCQAGVKGLITAIDRFEP 324

Query: 717  KRRFRLSTYGLFWIRHAI 664
            KR+FRLSTYGLFWIRHAI
Sbjct: 325  KRKFRLSTYGLFWIRHAI 342



 Score =  187 bits (474), Expect = 2e-44
 Identities = 94/119 (78%), Positives = 102/119 (85%)
 Frame = -1

Query: 571 ERYREVMRASKPVISLHARHAVTQEEFISGITDVDGVGGDKKRQPAXXXXXXXXXXXXLK 392
           ERY EV+RASKPV+SLHA+H +TQEEFI+ ITDVDGVG D++RQPA            LK
Sbjct: 394 ERYHEVLRASKPVLSLHAKHMITQEEFINVITDVDGVGADQRRQPALLRLALDDVLDSLK 453

Query: 391 PKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYI 215
           PKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLR Y+
Sbjct: 454 PKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRPYL 512


>ref|XP_002513587.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
            gi|223547495|gb|EEF48990.1| RNA polymerase sigma factor
            rpoD, putative [Ricinus communis]
          Length = 501

 Score =  264 bits (674), Expect = 1e-67
 Identities = 134/201 (66%), Positives = 156/201 (77%), Gaps = 8/201 (3%)
 Frame = -2

Query: 1242 SYDVVRSNKKKVKRLGLSKRIAMXXXXXXXXXXXXXXXXXXR--------LVREYSSSTD 1087
            S  +VR+  KK KRL L KRIA+                  +        LVR YS+ST+
Sbjct: 132  SRTIVRNRAKKTKRLSLDKRIALKKNEEEEVVGPIRKKKDSKDDNEKIEELVRTYSASTN 191

Query: 1086 VVSMDWKKMKIPPVLPSSEHTWLFKLMQPMKALLQVKDDMRKSLGREVTDGELAAATNMN 907
            +VS+DW+KMKIPPVLPS+EH WLFKLMQPMK LL VK D++K+LGR+ TDGELA ATNMN
Sbjct: 192  LVSLDWRKMKIPPVLPSTEHAWLFKLMQPMKTLLPVKADLQKNLGRDPTDGELAEATNMN 251

Query: 906  VPQLRKQMEVGRAARNKLIKHNLRLVLFVINKYFQEFAAGPRFQDLCQEGAKGLITAIDR 727
            V ++RKQ+EVGRAARNKLIKHNLRLV+FV+NKYFQ+FA GPRFQDLCQ G KGLITAIDR
Sbjct: 252  VEKVRKQLEVGRAARNKLIKHNLRLVMFVMNKYFQDFANGPRFQDLCQAGVKGLITAIDR 311

Query: 726  FEPKRRFRLSTYGLFWIRHAI 664
            FEP+RRF+LSTY LFWIRHAI
Sbjct: 312  FEPQRRFQLSTYSLFWIRHAI 332



 Score =  184 bits (467), Expect = 1e-43
 Identities = 94/119 (78%), Positives = 102/119 (85%)
 Frame = -1

Query: 571 ERYREVMRASKPVISLHARHAVTQEEFISGITDVDGVGGDKKRQPAXXXXXXXXXXXXLK 392
           ERY EV+RA+KP +SLHARHAVTQEEFI+GITD+DG  GD +RQPA            LK
Sbjct: 384 ERYHEVIRAAKPALSLHARHAVTQEEFINGITDIDG--GDNRRQPALLRLALDDVLDSLK 441

Query: 391 PKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYI 215
           PKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRK+EVKALMKLKHPARVDYLRRY+
Sbjct: 442 PKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKYEVKALMKLKHPARVDYLRRYV 500


>ref|XP_007219010.1| hypothetical protein PRUPE_ppa004259mg [Prunus persica]
            gi|462415472|gb|EMJ20209.1| hypothetical protein
            PRUPE_ppa004259mg [Prunus persica]
          Length = 519

 Score =  264 bits (674), Expect = 1e-67
 Identities = 136/202 (67%), Positives = 157/202 (77%), Gaps = 9/202 (4%)
 Frame = -2

Query: 1242 SYDVVRSNKKKVKRLGLSKRIAMXXXXXXXXXXXXXXXXXXR---------LVREYSSST 1090
            S  VVR+  KK KRL L+KR+A+                  R         LVREYS+ST
Sbjct: 147  SNTVVRNRTKKAKRLSLNKRVALKWNKDEKVISSIVRKRKSRKNENEKIEELVREYSTST 206

Query: 1089 DVVSMDWKKMKIPPVLPSSEHTWLFKLMQPMKALLQVKDDMRKSLGREVTDGELAAATNM 910
            D+VS+DWKKMKIPPVL SSEH WLFKLMQPMK LL+VK++++K LGRE T+GELA ATNM
Sbjct: 207  DLVSLDWKKMKIPPVLTSSEHAWLFKLMQPMKGLLEVKENLQKDLGREPTNGELAEATNM 266

Query: 909  NVPQLRKQMEVGRAARNKLIKHNLRLVLFVINKYFQEFAAGPRFQDLCQEGAKGLITAID 730
            +V Q++K +EVGRAAR+KLIKHNLRLVLFV+NKYFQ+FA GP+FQDLCQ G KGLITAID
Sbjct: 267  SVVQVKKHLEVGRAARSKLIKHNLRLVLFVMNKYFQDFANGPKFQDLCQAGVKGLITAID 326

Query: 729  RFEPKRRFRLSTYGLFWIRHAI 664
            RFEPKR FRLSTYGLFWIRHAI
Sbjct: 327  RFEPKRSFRLSTYGLFWIRHAI 348



 Score =  189 bits (479), Expect = 6e-45
 Identities = 95/119 (79%), Positives = 101/119 (84%)
 Frame = -1

Query: 571 ERYREVMRASKPVISLHARHAVTQEEFISGITDVDGVGGDKKRQPAXXXXXXXXXXXXLK 392
           ERY EVMRASKPV SLH+RH  TQEEFI+GITDVDGV GD +++PA            LK
Sbjct: 400 ERYHEVMRASKPVFSLHSRHTTTQEEFINGITDVDGVEGDNRQKPALLRLALDDVLDSLK 459

Query: 391 PKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYI 215
           PKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRY+
Sbjct: 460 PKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYV 518


>ref|XP_007219009.1| hypothetical protein PRUPE_ppa004259mg [Prunus persica]
            gi|462415471|gb|EMJ20208.1| hypothetical protein
            PRUPE_ppa004259mg [Prunus persica]
          Length = 390

 Score =  264 bits (674), Expect = 1e-67
 Identities = 136/202 (67%), Positives = 157/202 (77%), Gaps = 9/202 (4%)
 Frame = -2

Query: 1242 SYDVVRSNKKKVKRLGLSKRIAMXXXXXXXXXXXXXXXXXXR---------LVREYSSST 1090
            S  VVR+  KK KRL L+KR+A+                  R         LVREYS+ST
Sbjct: 147  SNTVVRNRTKKAKRLSLNKRVALKWNKDEKVISSIVRKRKSRKNENEKIEELVREYSTST 206

Query: 1089 DVVSMDWKKMKIPPVLPSSEHTWLFKLMQPMKALLQVKDDMRKSLGREVTDGELAAATNM 910
            D+VS+DWKKMKIPPVL SSEH WLFKLMQPMK LL+VK++++K LGRE T+GELA ATNM
Sbjct: 207  DLVSLDWKKMKIPPVLTSSEHAWLFKLMQPMKGLLEVKENLQKDLGREPTNGELAEATNM 266

Query: 909  NVPQLRKQMEVGRAARNKLIKHNLRLVLFVINKYFQEFAAGPRFQDLCQEGAKGLITAID 730
            +V Q++K +EVGRAAR+KLIKHNLRLVLFV+NKYFQ+FA GP+FQDLCQ G KGLITAID
Sbjct: 267  SVVQVKKHLEVGRAARSKLIKHNLRLVLFVMNKYFQDFANGPKFQDLCQAGVKGLITAID 326

Query: 729  RFEPKRRFRLSTYGLFWIRHAI 664
            RFEPKR FRLSTYGLFWIRHAI
Sbjct: 327  RFEPKRSFRLSTYGLFWIRHAI 348


>ref|XP_012440029.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Gossypium raimondii]
            gi|823214552|ref|XP_012440030.1| PREDICTED: RNA
            polymerase sigma factor sigE, chloroplastic/mitochondrial
            [Gossypium raimondii] gi|763785552|gb|KJB52623.1|
            hypothetical protein B456_008G270500 [Gossypium
            raimondii] gi|763785553|gb|KJB52624.1| hypothetical
            protein B456_008G270500 [Gossypium raimondii]
          Length = 516

 Score =  263 bits (671), Expect = 3e-67
 Identities = 133/198 (67%), Positives = 154/198 (77%), Gaps = 8/198 (4%)
 Frame = -2

Query: 1233 VVRSNKKKVKRLGLSKRIAMXXXXXXXXXXXXXXXXXXR--------LVREYSSSTDVVS 1078
            VVRS  KK +RLGL KRI +                           LVR+YS+STD+VS
Sbjct: 148  VVRSQTKKNRRLGLDKRIELKKNREEKSVVSGQSKKGISNESEKIDRLVRDYSASTDLVS 207

Query: 1077 MDWKKMKIPPVLPSSEHTWLFKLMQPMKALLQVKDDMRKSLGREVTDGELAAATNMNVPQ 898
            +DWKKMK+PPVLPS+EHTWLFKLMQPMKALL+ K++++K LGR+ T+ ELA ATN +  Q
Sbjct: 208  LDWKKMKMPPVLPSTEHTWLFKLMQPMKALLEAKENLQKDLGRDPTEDELAEATNSSAAQ 267

Query: 897  LRKQMEVGRAARNKLIKHNLRLVLFVINKYFQEFAAGPRFQDLCQEGAKGLITAIDRFEP 718
            +R+Q+EVGRAARNKLIKHNLRLVLFVI KYFQ+FA GPRFQDLCQ G KGLITAIDRFEP
Sbjct: 268  VRRQLEVGRAARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEP 327

Query: 717  KRRFRLSTYGLFWIRHAI 664
            +RRFRLSTYGLFWIRHAI
Sbjct: 328  RRRFRLSTYGLFWIRHAI 345



 Score =  195 bits (495), Expect = 8e-47
 Identities = 99/119 (83%), Positives = 104/119 (87%)
 Frame = -1

Query: 571 ERYREVMRASKPVISLHARHAVTQEEFISGITDVDGVGGDKKRQPAXXXXXXXXXXXXLK 392
           ERY+EVMRASKPV SLH RH+VTQEEFISGITDVDGVGGD +RQPA            LK
Sbjct: 397 ERYQEVMRASKPVASLHLRHSVTQEEFISGITDVDGVGGDHRRQPALLRLALDDVLDSLK 456

Query: 391 PKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYI 215
           PKESLVIRQRYGLDGKGDRTLGEIAGNL+ISREMVRKHEVKALMKLKHPARVDYLRRY+
Sbjct: 457 PKESLVIRQRYGLDGKGDRTLGEIAGNLSISREMVRKHEVKALMKLKHPARVDYLRRYV 515


>gb|KJB52622.1| hypothetical protein B456_008G270500 [Gossypium raimondii]
          Length = 547

 Score =  263 bits (671), Expect = 3e-67
 Identities = 133/198 (67%), Positives = 154/198 (77%), Gaps = 8/198 (4%)
 Frame = -2

Query: 1233 VVRSNKKKVKRLGLSKRIAMXXXXXXXXXXXXXXXXXXR--------LVREYSSSTDVVS 1078
            VVRS  KK +RLGL KRI +                           LVR+YS+STD+VS
Sbjct: 179  VVRSQTKKNRRLGLDKRIELKKNREEKSVVSGQSKKGISNESEKIDRLVRDYSASTDLVS 238

Query: 1077 MDWKKMKIPPVLPSSEHTWLFKLMQPMKALLQVKDDMRKSLGREVTDGELAAATNMNVPQ 898
            +DWKKMK+PPVLPS+EHTWLFKLMQPMKALL+ K++++K LGR+ T+ ELA ATN +  Q
Sbjct: 239  LDWKKMKMPPVLPSTEHTWLFKLMQPMKALLEAKENLQKDLGRDPTEDELAEATNSSAAQ 298

Query: 897  LRKQMEVGRAARNKLIKHNLRLVLFVINKYFQEFAAGPRFQDLCQEGAKGLITAIDRFEP 718
            +R+Q+EVGRAARNKLIKHNLRLVLFVI KYFQ+FA GPRFQDLCQ G KGLITAIDRFEP
Sbjct: 299  VRRQLEVGRAARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEP 358

Query: 717  KRRFRLSTYGLFWIRHAI 664
            +RRFRLSTYGLFWIRHAI
Sbjct: 359  RRRFRLSTYGLFWIRHAI 376



 Score =  195 bits (495), Expect = 8e-47
 Identities = 99/119 (83%), Positives = 104/119 (87%)
 Frame = -1

Query: 571 ERYREVMRASKPVISLHARHAVTQEEFISGITDVDGVGGDKKRQPAXXXXXXXXXXXXLK 392
           ERY+EVMRASKPV SLH RH+VTQEEFISGITDVDGVGGD +RQPA            LK
Sbjct: 428 ERYQEVMRASKPVASLHLRHSVTQEEFISGITDVDGVGGDHRRQPALLRLALDDVLDSLK 487

Query: 391 PKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYI 215
           PKESLVIRQRYGLDGKGDRTLGEIAGNL+ISREMVRKHEVKALMKLKHPARVDYLRRY+
Sbjct: 488 PKESLVIRQRYGLDGKGDRTLGEIAGNLSISREMVRKHEVKALMKLKHPARVDYLRRYV 546


>ref|XP_008234778.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Prunus mume]
          Length = 507

 Score =  262 bits (669), Expect = 5e-67
 Identities = 135/202 (66%), Positives = 155/202 (76%), Gaps = 9/202 (4%)
 Frame = -2

Query: 1242 SYDVVRSNKKKVKRLGLSKRIAMXXXXXXXXXXXXXXXXXXR---------LVREYSSST 1090
            S  VVR+  KK KRL L KR+ +                  R         LVREYS+ST
Sbjct: 135  SNTVVRNRTKKAKRLSLDKRVTLKWNKDEKVIASIVRKRKSRKNENEKIEELVREYSAST 194

Query: 1089 DVVSMDWKKMKIPPVLPSSEHTWLFKLMQPMKALLQVKDDMRKSLGREVTDGELAAATNM 910
            D+VS+DWKKMKIPPVL SSEH WLFKLMQPMK LL+VK++++K LGRE T+GELA ATNM
Sbjct: 195  DLVSLDWKKMKIPPVLTSSEHAWLFKLMQPMKGLLEVKENLQKDLGREPTNGELAEATNM 254

Query: 909  NVPQLRKQMEVGRAARNKLIKHNLRLVLFVINKYFQEFAAGPRFQDLCQEGAKGLITAID 730
            +V Q++K +EVGRAAR+KLIKHNLRLVLFV+NKYFQ+FA GP+FQDLCQ G KGLITAID
Sbjct: 255  SVVQVKKHLEVGRAARSKLIKHNLRLVLFVMNKYFQDFANGPKFQDLCQAGVKGLITAID 314

Query: 729  RFEPKRRFRLSTYGLFWIRHAI 664
            RFEPKR FRLSTYGLFWIRHAI
Sbjct: 315  RFEPKRSFRLSTYGLFWIRHAI 336



 Score =  189 bits (479), Expect = 6e-45
 Identities = 95/119 (79%), Positives = 101/119 (84%)
 Frame = -1

Query: 571 ERYREVMRASKPVISLHARHAVTQEEFISGITDVDGVGGDKKRQPAXXXXXXXXXXXXLK 392
           ERY EVMRASKPV SLH+RH  TQEEFI+GITDVDGV GD +++PA            LK
Sbjct: 388 ERYHEVMRASKPVFSLHSRHTTTQEEFINGITDVDGVEGDNRQKPALLRLALDDVLDSLK 447

Query: 391 PKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYI 215
           PKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRY+
Sbjct: 448 PKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYV 506


>ref|XP_004308009.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Fragaria vesca subsp. vesca]
          Length = 520

 Score =  262 bits (669), Expect = 5e-67
 Identities = 135/199 (67%), Positives = 153/199 (76%), Gaps = 9/199 (4%)
 Frame = -2

Query: 1233 VVRSNKKKVKRLGLSKRIAMXXXXXXXXXXXXXXXXXXR---------LVREYSSSTDVV 1081
            VVRS  KK KRL L KR+A+                  +         LVREYS+STD+V
Sbjct: 151  VVRSVTKKAKRLSLDKRVALKWNKDEKVAASVVRKRKDKRSENEMMEELVREYSASTDLV 210

Query: 1080 SMDWKKMKIPPVLPSSEHTWLFKLMQPMKALLQVKDDMRKSLGREVTDGELAAATNMNVP 901
            S+DWKKM+IPPVL SSEHTWLFKLMQPMK LL+VK+ ++K LGRE   GELA ATNM V 
Sbjct: 211  SLDWKKMRIPPVLSSSEHTWLFKLMQPMKGLLEVKEILQKDLGREPNKGELAEATNMTVV 270

Query: 900  QLRKQMEVGRAARNKLIKHNLRLVLFVINKYFQEFAAGPRFQDLCQEGAKGLITAIDRFE 721
            Q+++ +EVGRAARNKLIKHNLRLVLFVINKYFQ+FA GP+FQDLCQ G KGLITAIDRFE
Sbjct: 271  QVKRHLEVGRAARNKLIKHNLRLVLFVINKYFQDFANGPKFQDLCQAGVKGLITAIDRFE 330

Query: 720  PKRRFRLSTYGLFWIRHAI 664
            P+RRFRLSTYGLFWIRHAI
Sbjct: 331  PQRRFRLSTYGLFWIRHAI 349



 Score =  190 bits (483), Expect = 2e-45
 Identities = 97/119 (81%), Positives = 103/119 (86%)
 Frame = -1

Query: 571 ERYREVMRASKPVISLHARHAVTQEEFISGITDVDGVGGDKKRQPAXXXXXXXXXXXXLK 392
           ERY EVMRASKPV SL++RH+VTQEEFI+GITDVDGV GD +R+PA            LK
Sbjct: 401 ERYHEVMRASKPVFSLNSRHSVTQEEFINGITDVDGVDGDNRRKPALLRLAIDDVLDSLK 460

Query: 391 PKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYI 215
           PKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYI
Sbjct: 461 PKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYI 519


>ref|XP_008465379.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Cucumis melo]
          Length = 511

 Score =  261 bits (668), Expect = 7e-67
 Identities = 133/200 (66%), Positives = 158/200 (79%), Gaps = 10/200 (5%)
 Frame = -2

Query: 1233 VVRSNKKKVKRLGLSKRIAM----------XXXXXXXXXXXXXXXXXXRLVREYSSSTDV 1084
            +VR+  K++KRL L KRIA+                            RLVR+YS+STD+
Sbjct: 141  IVRNKTKRIKRLDLDKRIALKNKRKAERKSGSFIKETKETKNEDDEIDRLVRDYSASTDL 200

Query: 1083 VSMDWKKMKIPPVLPSSEHTWLFKLMQPMKALLQVKDDMRKSLGREVTDGELAAATNMNV 904
            VS+DWKKMKIPPVLPSSEHT LFKL+QPMKAL++V+++++K LGRE T+ ELA ATNMNV
Sbjct: 201  VSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALIEVQEELQKELGREPTEAELANATNMNV 260

Query: 903  PQLRKQMEVGRAARNKLIKHNLRLVLFVINKYFQEFAAGPRFQDLCQEGAKGLITAIDRF 724
             Q+R+Q+EVGRAARNKLIKHNLRLVLFVINKYF++FA GP+FQDLCQ G KGLITAIDRF
Sbjct: 261  IQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFATGPKFQDLCQAGVKGLITAIDRF 320

Query: 723  EPKRRFRLSTYGLFWIRHAI 664
            EPKR+FRLSTY LFWIRHAI
Sbjct: 321  EPKRKFRLSTYALFWIRHAI 340



 Score =  183 bits (465), Expect = 2e-43
 Identities = 92/119 (77%), Positives = 100/119 (84%)
 Frame = -1

Query: 571 ERYREVMRASKPVISLHARHAVTQEEFISGITDVDGVGGDKKRQPAXXXXXXXXXXXXLK 392
           ERY EVMRA+KPV SLH+RH+ T EE I+GITDV+G GGD +RQPA            LK
Sbjct: 392 ERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDNRRQPALLRLALDDVLDSLK 451

Query: 391 PKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYI 215
           PKESLVIRQRYGLDGKG+RTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRY+
Sbjct: 452 PKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYL 510


>ref|XP_010097858.1| RNA polymerase sigma factor rpoD [Morus notabilis]
            gi|587883538|gb|EXB72455.1| RNA polymerase sigma factor
            rpoD [Morus notabilis]
          Length = 517

 Score =  261 bits (667), Expect = 9e-67
 Identities = 131/199 (65%), Positives = 154/199 (77%), Gaps = 9/199 (4%)
 Frame = -2

Query: 1233 VVRSNKKKVKRLGLSKRIAM---------XXXXXXXXXXXXXXXXXXRLVREYSSSTDVV 1081
            VVR+ KKK KRL L KR+ +                           +LVREYS+STD+V
Sbjct: 148  VVRNRKKKAKRLSLHKRVELKRDKEENVAVVLVRKRRESLNEEEKIEKLVREYSASTDLV 207

Query: 1080 SMDWKKMKIPPVLPSSEHTWLFKLMQPMKALLQVKDDMRKSLGREVTDGELAAATNMNVP 901
            S+DWKKMKIPPVLPSSEHTWLFKLMQP+K L QV +D++K+LGRE T+ ELA ATN++V 
Sbjct: 208  SLDWKKMKIPPVLPSSEHTWLFKLMQPLKQLFQVGEDLQKTLGREPTENELAEATNISVV 267

Query: 900  QLRKQMEVGRAARNKLIKHNLRLVLFVINKYFQEFAAGPRFQDLCQEGAKGLITAIDRFE 721
            Q+++ +E GRAARNKLIKHNLRLVLFV+NKYFQ+F  GP+FQDLCQ G +GLITAIDRFE
Sbjct: 268  QVKRHLEAGRAARNKLIKHNLRLVLFVMNKYFQDFTNGPKFQDLCQAGVRGLITAIDRFE 327

Query: 720  PKRRFRLSTYGLFWIRHAI 664
            PKRRFRLSTYGLFWIRHAI
Sbjct: 328  PKRRFRLSTYGLFWIRHAI 346



 Score =  186 bits (472), Expect = 4e-44
 Identities = 95/119 (79%), Positives = 101/119 (84%)
 Frame = -1

Query: 571 ERYREVMRASKPVISLHARHAVTQEEFISGITDVDGVGGDKKRQPAXXXXXXXXXXXXLK 392
           ERY EVMRASKPVISL++RH  TQEEFI+ ITDVDGV GD +R+PA            LK
Sbjct: 398 ERYHEVMRASKPVISLNSRHVTTQEEFINAITDVDGVDGDDRRKPALLRLALDDVLDSLK 457

Query: 391 PKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYI 215
           PKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRY+
Sbjct: 458 PKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYM 516


>ref|XP_006593758.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like isoform X3 [Glycine max]
            gi|947069257|gb|KRH18148.1| hypothetical protein
            GLYMA_13G041200 [Glycine max] gi|947069258|gb|KRH18149.1|
            hypothetical protein GLYMA_13G041200 [Glycine max]
          Length = 488

 Score =  261 bits (667), Expect = 9e-67
 Identities = 134/199 (67%), Positives = 155/199 (77%), Gaps = 8/199 (4%)
 Frame = -2

Query: 1236 DVVRSNKKKVKRLGLSKRIAMXXXXXXXXXXXXXXXXXXR--------LVREYSSSTDVV 1081
            +VVR+  KK KRL L KRIA+                  +        L+R+YS+STD+V
Sbjct: 120  NVVRNQNKKAKRLSLDKRIALKNNAKEEVIDQTQKKRNVKNRVQNIDVLIRDYSASTDLV 179

Query: 1080 SMDWKKMKIPPVLPSSEHTWLFKLMQPMKALLQVKDDMRKSLGREVTDGELAAATNMNVP 901
            SMDWKKMKIPPVLPSSEH WLFKLMQPMKALLQ K+D+ K + +E+T GELA ATNM++ 
Sbjct: 180  SMDWKKMKIPPVLPSSEHAWLFKLMQPMKALLQAKEDL-KEVDKEITGGELADATNMSII 238

Query: 900  QLRKQMEVGRAARNKLIKHNLRLVLFVINKYFQEFAAGPRFQDLCQEGAKGLITAIDRFE 721
            Q+RK +EVGRAARNKLIKHNLRLVLFVINKYFQ+FA+GPRFQDLCQ G KGLITAIDRFE
Sbjct: 239  QVRKAIEVGRAARNKLIKHNLRLVLFVINKYFQDFASGPRFQDLCQAGVKGLITAIDRFE 298

Query: 720  PKRRFRLSTYGLFWIRHAI 664
            PKRR +LSTY LFWIRH+I
Sbjct: 299  PKRRLQLSTYSLFWIRHSI 317



 Score =  184 bits (466), Expect = 2e-43
 Identities = 91/119 (76%), Positives = 101/119 (84%)
 Frame = -1

Query: 571 ERYREVMRASKPVISLHARHAVTQEEFISGITDVDGVGGDKKRQPAXXXXXXXXXXXXLK 392
           ERY EVM+ASKP++SLH+RH  TQEE+I+GITDVDGV GD +RQ A            LK
Sbjct: 369 ERYHEVMKASKPILSLHSRHITTQEEYINGITDVDGVNGDNRRQLAVLRLALDDVLDSLK 428

Query: 391 PKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYI 215
           PKESLVIRQRYGLDGKGDRTLGEIAGNLNISRE+VRKHEVKALMKLKHPAR+DYLRRY+
Sbjct: 429 PKESLVIRQRYGLDGKGDRTLGEIAGNLNISREIVRKHEVKALMKLKHPARLDYLRRYV 487


>ref|XP_003541542.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like isoform X1 [Glycine max]
            gi|571496981|ref|XP_006593757.1| PREDICTED: RNA
            polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like isoform X2 [Glycine max]
            gi|734385888|gb|KHN24776.1| RNA polymerase sigma factor
            rpoD [Glycine soja] gi|947069254|gb|KRH18145.1|
            hypothetical protein GLYMA_13G041200 [Glycine max]
            gi|947069255|gb|KRH18146.1| hypothetical protein
            GLYMA_13G041200 [Glycine max] gi|947069256|gb|KRH18147.1|
            hypothetical protein GLYMA_13G041200 [Glycine max]
          Length = 512

 Score =  261 bits (667), Expect = 9e-67
 Identities = 134/199 (67%), Positives = 155/199 (77%), Gaps = 8/199 (4%)
 Frame = -2

Query: 1236 DVVRSNKKKVKRLGLSKRIAMXXXXXXXXXXXXXXXXXXR--------LVREYSSSTDVV 1081
            +VVR+  KK KRL L KRIA+                  +        L+R+YS+STD+V
Sbjct: 144  NVVRNQNKKAKRLSLDKRIALKNNAKEEVIDQTQKKRNVKNRVQNIDVLIRDYSASTDLV 203

Query: 1080 SMDWKKMKIPPVLPSSEHTWLFKLMQPMKALLQVKDDMRKSLGREVTDGELAAATNMNVP 901
            SMDWKKMKIPPVLPSSEH WLFKLMQPMKALLQ K+D+ K + +E+T GELA ATNM++ 
Sbjct: 204  SMDWKKMKIPPVLPSSEHAWLFKLMQPMKALLQAKEDL-KEVDKEITGGELADATNMSII 262

Query: 900  QLRKQMEVGRAARNKLIKHNLRLVLFVINKYFQEFAAGPRFQDLCQEGAKGLITAIDRFE 721
            Q+RK +EVGRAARNKLIKHNLRLVLFVINKYFQ+FA+GPRFQDLCQ G KGLITAIDRFE
Sbjct: 263  QVRKAIEVGRAARNKLIKHNLRLVLFVINKYFQDFASGPRFQDLCQAGVKGLITAIDRFE 322

Query: 720  PKRRFRLSTYGLFWIRHAI 664
            PKRR +LSTY LFWIRH+I
Sbjct: 323  PKRRLQLSTYSLFWIRHSI 341



 Score =  184 bits (466), Expect = 2e-43
 Identities = 91/119 (76%), Positives = 101/119 (84%)
 Frame = -1

Query: 571 ERYREVMRASKPVISLHARHAVTQEEFISGITDVDGVGGDKKRQPAXXXXXXXXXXXXLK 392
           ERY EVM+ASKP++SLH+RH  TQEE+I+GITDVDGV GD +RQ A            LK
Sbjct: 393 ERYHEVMKASKPILSLHSRHITTQEEYINGITDVDGVNGDNRRQLAVLRLALDDVLDSLK 452

Query: 391 PKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYI 215
           PKESLVIRQRYGLDGKGDRTLGEIAGNLNISRE+VRKHEVKALMKLKHPAR+DYLRRY+
Sbjct: 453 PKESLVIRQRYGLDGKGDRTLGEIAGNLNISREIVRKHEVKALMKLKHPARLDYLRRYV 511


>ref|XP_009601650.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Nicotiana tomentosiformis]
          Length = 519

 Score =  261 bits (666), Expect = 1e-66
 Identities = 131/200 (65%), Positives = 153/200 (76%), Gaps = 9/200 (4%)
 Frame = -2

Query: 1236 DVVRSNKKKVKRLGLSKRIAMXXXXXXXXXXXXXXXXXXR---------LVREYSSSTDV 1084
            +VV++ +KK KRL L +RIA+                            LVREYS +TD+
Sbjct: 149  NVVKNRRKKSKRLNLDQRIALLKNKEGELVASSQKRELKEDTEDEKIDKLVREYSGATDL 208

Query: 1083 VSMDWKKMKIPPVLPSSEHTWLFKLMQPMKALLQVKDDMRKSLGREVTDGELAAATNMNV 904
             S+DWKKMKIPPVLPSSEH WLFKLMQPMKA+LQVK++++  LGRE TD E+A ATN++ 
Sbjct: 209  ASLDWKKMKIPPVLPSSEHAWLFKLMQPMKAILQVKENLQNDLGREPTDAEVAEATNIDA 268

Query: 903  PQLRKQMEVGRAARNKLIKHNLRLVLFVINKYFQEFAAGPRFQDLCQEGAKGLITAIDRF 724
             +LRK +EVGRAARNKLIKHNLRLVLFVINKYFQ+FA GP+FQDLCQ G KGLITAIDRF
Sbjct: 269  SELRKNLEVGRAARNKLIKHNLRLVLFVINKYFQDFANGPKFQDLCQAGVKGLITAIDRF 328

Query: 723  EPKRRFRLSTYGLFWIRHAI 664
            EP R+FRLSTYGLFWIRHAI
Sbjct: 329  EPNRKFRLSTYGLFWIRHAI 348



 Score =  187 bits (474), Expect = 2e-44
 Identities = 95/120 (79%), Positives = 100/120 (83%)
 Frame = -1

Query: 571 ERYREVMRASKPVISLHARHAVTQEEFISGITDVDGVGGDKKRQPAXXXXXXXXXXXXLK 392
           ERY EVM+ SKPV SLHARH  TQEEFI+GITDVDGV G K++QPA            LK
Sbjct: 400 ERYHEVMKVSKPVFSLHARHMTTQEEFINGITDVDGVDGVKRKQPALLRLALDDVLDSLK 459

Query: 391 PKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYIF 212
           PKESLVIRQRYGLDGKG+RTLGEIAGNLNISREMVRKHEVKALMKLKHP RVDYLRRYIF
Sbjct: 460 PKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPTRVDYLRRYIF 519


>ref|XP_009785134.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Nicotiana sylvestris]
          Length = 519

 Score =  260 bits (664), Expect = 2e-66
 Identities = 131/200 (65%), Positives = 152/200 (76%), Gaps = 9/200 (4%)
 Frame = -2

Query: 1236 DVVRSNKKKVKRLGLSKRIAMXXXXXXXXXXXXXXXXXXR---------LVREYSSSTDV 1084
            +VV++ +KK KRL L +RIA+                            LVREYS +TD+
Sbjct: 149  NVVKNRRKKSKRLNLDQRIALLKNKEGELVASSQKRELKEDTEDEKIDKLVREYSGATDL 208

Query: 1083 VSMDWKKMKIPPVLPSSEHTWLFKLMQPMKALLQVKDDMRKSLGREVTDGELAAATNMNV 904
             S+DWKKMKIPPVLPSSEH WLFKLMQPMKA+LQVK++++  LGRE TD E A ATN++ 
Sbjct: 209  ASLDWKKMKIPPVLPSSEHAWLFKLMQPMKAILQVKENLQNDLGREPTDAEAAEATNIDA 268

Query: 903  PQLRKQMEVGRAARNKLIKHNLRLVLFVINKYFQEFAAGPRFQDLCQEGAKGLITAIDRF 724
             +LRK +EVGRAARNKLIKHNLRLVLFVINKYFQ+FA GP+FQDLCQ G KGLITAIDRF
Sbjct: 269  SELRKNLEVGRAARNKLIKHNLRLVLFVINKYFQDFANGPKFQDLCQAGVKGLITAIDRF 328

Query: 723  EPKRRFRLSTYGLFWIRHAI 664
            EP R+FRLSTYGLFWIRHAI
Sbjct: 329  EPNRKFRLSTYGLFWIRHAI 348



 Score =  191 bits (485), Expect = 1e-45
 Identities = 97/120 (80%), Positives = 100/120 (83%)
 Frame = -1

Query: 571 ERYREVMRASKPVISLHARHAVTQEEFISGITDVDGVGGDKKRQPAXXXXXXXXXXXXLK 392
           ERY EVM+ SKPV SLHARH  TQEE I+GITDVDGV GDK+RQPA            LK
Sbjct: 400 ERYHEVMKVSKPVFSLHARHMTTQEELINGITDVDGVDGDKRRQPALLRLALDDVLDSLK 459

Query: 391 PKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYIF 212
           PKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHP RVDYLRRYIF
Sbjct: 460 PKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPTRVDYLRRYIF 519


>ref|XP_004234179.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial isoform X1 [Solanum
            lycopersicum]
          Length = 516

 Score =  260 bits (664), Expect = 2e-66
 Identities = 131/200 (65%), Positives = 153/200 (76%), Gaps = 9/200 (4%)
 Frame = -2

Query: 1236 DVVRSNKKKVKRLGLSKRIAMXXXXXXXXXXXXXXXXXXR---------LVREYSSSTDV 1084
            +VV++ +KK KRL L +RIA+                            LVREYS +TD+
Sbjct: 146  NVVKNRRKKSKRLNLDQRIALLKNKEGKMLASSERRKLNEDTEDEKIDKLVREYSGATDL 205

Query: 1083 VSMDWKKMKIPPVLPSSEHTWLFKLMQPMKALLQVKDDMRKSLGREVTDGELAAATNMNV 904
             S+DWKKMKIPPVLPSSEHTWLFKLMQPMKA+LQVK++++  LGRE TDGE+A ATNM+ 
Sbjct: 206  ASLDWKKMKIPPVLPSSEHTWLFKLMQPMKAILQVKENLQNDLGREPTDGEVAEATNMDA 265

Query: 903  PQLRKQMEVGRAARNKLIKHNLRLVLFVINKYFQEFAAGPRFQDLCQEGAKGLITAIDRF 724
             +LRK++E GRAARNKLIKHNLRLVLFV+NKYFQ+FA   RFQDLCQ G KGLITAIDRF
Sbjct: 266  SELRKKLEAGRAARNKLIKHNLRLVLFVMNKYFQDFANASRFQDLCQAGVKGLITAIDRF 325

Query: 723  EPKRRFRLSTYGLFWIRHAI 664
            EP R+FRLSTYGLFWIRHAI
Sbjct: 326  EPNRKFRLSTYGLFWIRHAI 345



 Score =  186 bits (471), Expect = 5e-44
 Identities = 93/120 (77%), Positives = 100/120 (83%)
 Frame = -1

Query: 571 ERYREVMRASKPVISLHARHAVTQEEFISGITDVDGVGGDKKRQPAXXXXXXXXXXXXLK 392
           ERY EVM+ SKP+ SLHAR+  TQEE I+GITDVDGV GDK++QPA            LK
Sbjct: 397 ERYHEVMKVSKPIFSLHARNKTTQEELINGITDVDGVDGDKRKQPALLRLALDDVLDSLK 456

Query: 391 PKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYIF 212
           PKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHP RVDY+RRYIF
Sbjct: 457 PKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPTRVDYVRRYIF 516


>ref|XP_006350582.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like [Solanum tuberosum]
          Length = 516

 Score =  259 bits (663), Expect = 3e-66
 Identities = 131/200 (65%), Positives = 153/200 (76%), Gaps = 9/200 (4%)
 Frame = -2

Query: 1236 DVVRSNKKKVKRLGLSKRIAMXXXXXXXXXXXXXXXXXXR---------LVREYSSSTDV 1084
            +VV++ +K  KRL L +RIA+                            LVREYS +TD+
Sbjct: 146  NVVKNRRKTSKRLNLDQRIALLKNKEGEMVASSERRKLKEDTEDEKIDKLVREYSGATDL 205

Query: 1083 VSMDWKKMKIPPVLPSSEHTWLFKLMQPMKALLQVKDDMRKSLGREVTDGELAAATNMNV 904
             S+DWKKMKIPPVLPSSEH WLFKLMQPMKA+LQVK++++  LGRE TDGE+A ATNM+ 
Sbjct: 206  ASLDWKKMKIPPVLPSSEHVWLFKLMQPMKAILQVKENLQNDLGREPTDGEVAEATNMDA 265

Query: 903  PQLRKQMEVGRAARNKLIKHNLRLVLFVINKYFQEFAAGPRFQDLCQEGAKGLITAIDRF 724
             +LRK++EVGRAARNKLIKHNLRLVLFV+NKYFQ+FA G RFQDLCQ G KGLITAIDRF
Sbjct: 266  SELRKKLEVGRAARNKLIKHNLRLVLFVMNKYFQDFANGSRFQDLCQAGVKGLITAIDRF 325

Query: 723  EPKRRFRLSTYGLFWIRHAI 664
            EP R+FRLSTYGLFWIRHAI
Sbjct: 326  EPNRKFRLSTYGLFWIRHAI 345



 Score =  185 bits (470), Expect = 7e-44
 Identities = 94/120 (78%), Positives = 100/120 (83%)
 Frame = -1

Query: 571 ERYREVMRASKPVISLHARHAVTQEEFISGITDVDGVGGDKKRQPAXXXXXXXXXXXXLK 392
           ERY EVM+ SKPV SLHAR+  TQEE I+GITDVDGV GDK++QPA            LK
Sbjct: 397 ERYHEVMKVSKPVSSLHARNKTTQEELINGITDVDGVDGDKRKQPALLRLALDDVLDSLK 456

Query: 391 PKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYIF 212
           PKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHP RVDY+RRYIF
Sbjct: 457 PKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPTRVDYVRRYIF 516