BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Aconitum23_contig00016296
         (1358 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010661369.1| PREDICTED: DNA-directed RNA polymerase IV su...   375   e-101
ref|XP_010661365.1| PREDICTED: DNA-directed RNA polymerase IV su...   375   e-101
emb|CAN66198.1| hypothetical protein VITISV_011232 [Vitis vinifera]   369   3e-99
ref|XP_010278507.1| PREDICTED: DNA-directed RNA polymerase IV su...   366   3e-98
emb|CBI34757.3| unnamed protein product [Vitis vinifera]              357   1e-95
ref|XP_012087018.1| PREDICTED: DNA-directed RNA polymerase IV su...   355   4e-95
ref|XP_010053343.1| PREDICTED: DNA-directed RNA polymerase IV su...   345   5e-92
ref|XP_011650447.1| PREDICTED: DNA-directed RNA polymerase IV su...   340   1e-90
ref|XP_011014513.1| PREDICTED: DNA-directed RNA polymerase IV su...   338   5e-90
ref|XP_011029161.1| PREDICTED: DNA-directed RNA polymerase IV su...   338   6e-90
ref|XP_008448971.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   330   2e-87
ref|XP_007040111.1| DNA-directed RNA polymerase II subunit RPB1-...   328   5e-87
ref|XP_006440521.1| hypothetical protein CICLE_v10018489mg [Citr...   326   3e-86
ref|XP_006477376.1| PREDICTED: DNA-directed RNA polymerase IV su...   324   1e-85
ref|XP_006477375.1| PREDICTED: DNA-directed RNA polymerase IV su...   324   1e-85
ref|XP_012476049.1| PREDICTED: DNA-directed RNA polymerase IV su...   323   3e-85
ref|XP_012476045.1| PREDICTED: DNA-directed RNA polymerase IV su...   323   3e-85
ref|XP_010676559.1| PREDICTED: DNA-directed RNA polymerase IV su...   322   6e-85
gb|KJB25756.1| hypothetical protein B456_004G207300 [Gossypium r...   321   1e-84
ref|XP_011463806.1| PREDICTED: DNA-directed RNA polymerase IV su...   320   2e-84

>ref|XP_010661369.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X2 [Vitis
            vinifera]
          Length = 1458

 Score =  375 bits (962), Expect = e-101
 Identities = 192/411 (46%), Positives = 257/411 (62%), Gaps = 9/411 (2%)
 Frame = -3

Query: 1206 MDGGTIIEQVVPLAVLTHIKFSVLTEGDIEKLSVLSINIAADVTNAKLGLPNEASECFTC 1027
            MD   + EQ VP  +L  IKF V TE D+EK+SV+ I+   ++T+ KLG+PN + +C TC
Sbjct: 1    MDNDFLEEQQVPSGLLIGIKFDVSTEEDMEKISVMKIDAVNEITDPKLGVPNPSCQCSTC 60

Query: 1026 GARDTKKCDGHFGFIKLPMDICHPYYVSELVKILNSICPACKCNKSEXXXXXXXXXXXXX 847
            GA+DTKKC+GHFG IK P  I HPY+++E+V+ILN ICP CK  +               
Sbjct: 61   GAKDTKKCEGHFGVIKFPFTILHPYFLTEVVQILNKICPGCKSTRQGQWVKGADSGSRRL 120

Query: 846  XTPNHQPKSCNYCRGNSENWWPKITFKATSKVGKMALTVSADVNEKLPKKFHNKKLSDVF 667
                 + K C YC  NS +W+P + FK +SK       +  ++NEKLPKK   K    V 
Sbjct: 121  -----RSKGCKYCAANSNDWYPTMKFKVSSKDLFRKTAIIVEMNEKLPKKLQKKSFRPVL 175

Query: 666  PPDYWSIIERDPSQEDMYLNSNSRCLTAYQVYYLLKDIDPTSIEKFVRGRESLFLTCVPV 487
            P DYW  I +DP QE+  LN N R L+  QV+YLLKDIDP  I++FV   +S FL C+PV
Sbjct: 176  PLDYWDFIPKDPQQEENCLNPNRRVLSHAQVHYLLKDIDPGFIKEFVSRMDSFFLNCLPV 235

Query: 486  TSNATRVRETT------SKLMFDERTRAYKRLVDFKGEVNELGVRVRECLSASKIHSDNS 325
            T N  RV E T        L+FD+ +RAYK+LVDF+G  NEL  RV +CL  SK+ S+ S
Sbjct: 236  TPNNHRVTEITHALSNGQTLIFDQHSRAYKKLVDFRGTANELSCRVLDCLKTSKLRSEKS 295

Query: 324  SNVDI---KSGSKWLKDVILSKRSDHSFRMVVVGDPNIKLGDIGMPQNICQALVISETLN 154
            ++ D     SG KW+K+V+L KR++HSFRM+VVGDP ++L +IG+P +I + L+ISE LN
Sbjct: 296  TSKDSASKMSGLKWIKEVLLGKRTNHSFRMIVVGDPKLRLSEIGIPCHIAEELLISEHLN 355

Query: 153  DHNKERLYDYCNWSLLEMGGFRVRRKDNLVIFRNPNDLEIGDTVYRHLDEG 1
              N E++ + CN  LLE G   VRRK  L   R  ND + GD +YR L +G
Sbjct: 356  SWNWEKVTNGCNLRLLEKGQTYVRRKGTLAPVRRMNDFQAGDIIYRPLTDG 406


>ref|XP_010661365.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1 [Vitis
            vinifera]
          Length = 1460

 Score =  375 bits (962), Expect = e-101
 Identities = 192/411 (46%), Positives = 257/411 (62%), Gaps = 9/411 (2%)
 Frame = -3

Query: 1206 MDGGTIIEQVVPLAVLTHIKFSVLTEGDIEKLSVLSINIAADVTNAKLGLPNEASECFTC 1027
            MD   + EQ VP  +L  IKF V TE D+EK+SV+ I+   ++T+ KLG+PN + +C TC
Sbjct: 1    MDNDFLEEQQVPSGLLIGIKFDVSTEEDMEKISVMKIDAVNEITDPKLGVPNPSCQCSTC 60

Query: 1026 GARDTKKCDGHFGFIKLPMDICHPYYVSELVKILNSICPACKCNKSEXXXXXXXXXXXXX 847
            GA+DTKKC+GHFG IK P  I HPY+++E+V+ILN ICP CK  +               
Sbjct: 61   GAKDTKKCEGHFGVIKFPFTILHPYFLTEVVQILNKICPGCKSTRQGQWVKGADSGSRRL 120

Query: 846  XTPNHQPKSCNYCRGNSENWWPKITFKATSKVGKMALTVSADVNEKLPKKFHNKKLSDVF 667
                 + K C YC  NS +W+P + FK +SK       +  ++NEKLPKK   K    V 
Sbjct: 121  -----RSKGCKYCAANSNDWYPTMKFKVSSKDLFRKTAIIVEMNEKLPKKLQKKSFRPVL 175

Query: 666  PPDYWSIIERDPSQEDMYLNSNSRCLTAYQVYYLLKDIDPTSIEKFVRGRESLFLTCVPV 487
            P DYW  I +DP QE+  LN N R L+  QV+YLLKDIDP  I++FV   +S FL C+PV
Sbjct: 176  PLDYWDFIPKDPQQEENCLNPNRRVLSHAQVHYLLKDIDPGFIKEFVSRMDSFFLNCLPV 235

Query: 486  TSNATRVRETT------SKLMFDERTRAYKRLVDFKGEVNELGVRVRECLSASKIHSDNS 325
            T N  RV E T        L+FD+ +RAYK+LVDF+G  NEL  RV +CL  SK+ S+ S
Sbjct: 236  TPNNHRVTEITHALSNGQTLIFDQHSRAYKKLVDFRGTANELSCRVLDCLKTSKLRSEKS 295

Query: 324  SNVDI---KSGSKWLKDVILSKRSDHSFRMVVVGDPNIKLGDIGMPQNICQALVISETLN 154
            ++ D     SG KW+K+V+L KR++HSFRM+VVGDP ++L +IG+P +I + L+ISE LN
Sbjct: 296  TSKDSASKMSGLKWIKEVLLGKRTNHSFRMIVVGDPKLRLSEIGIPCHIAEELLISEHLN 355

Query: 153  DHNKERLYDYCNWSLLEMGGFRVRRKDNLVIFRNPNDLEIGDTVYRHLDEG 1
              N E++ + CN  LLE G   VRRK  L   R  ND + GD +YR L +G
Sbjct: 356  SWNWEKVTNGCNLRLLEKGQTYVRRKGTLAPVRRMNDFQAGDIIYRPLTDG 406


>emb|CAN66198.1| hypothetical protein VITISV_011232 [Vitis vinifera]
          Length = 1393

 Score =  369 bits (948), Expect = 3e-99
 Identities = 192/414 (46%), Positives = 257/414 (62%), Gaps = 12/414 (2%)
 Frame = -3

Query: 1206 MDGGTIIEQVVPLAVLTHIKFSVLTEGDIEKLSVLSINIAADVTNAKLGLPNEASECFTC 1027
            MD   + EQ VP  +L  IKF V TE D+EK+SV+ I+   ++T+ KLG+PN + +C TC
Sbjct: 1    MDNDFLEEQQVPSGLLIGIKFDVSTEEDMEKISVMKIDAVNEITDPKLGVPNPSCQCSTC 60

Query: 1026 GARDTKKCDGHFGFIKLPMDICHPYYVSELVKILNSICPACKCNKSEXXXXXXXXXXXXX 847
            GA+DTKKC+GHFG IK P  I HPY+++E+V+ILN ICP CK  +               
Sbjct: 61   GAKDTKKCEGHFGVIKFPFTILHPYFLTEVVQILNKICPGCKSTRQGQWVKGADSGSRRL 120

Query: 846  XTPNHQPKSCNYCRGNSENWWPKITFKATSKVGKMALTVSADVNEKLPKKFHNKKLSDVF 667
                 + K C YC  NS +W+P + FK +SK       +  ++NEKLPKK   K    V 
Sbjct: 121  -----RSKGCKYCAANSNDWYPTMKFKVSSKDLFRKTAIIVEMNEKLPKKLQKKSFRPVL 175

Query: 666  PPDYWSIIERDPSQEDMYLNSNSRCLTAYQVYYLLKDIDPTSIEKFVRGRESLFLTCVPV 487
            P DYW  I +DP QE+  LN N R L+  QV+YLLKDIDP  I++FV   +S FL C+PV
Sbjct: 176  PLDYWDFIPKDPQQEENCLNPNRRVLSHAQVHYLLKDIDPGFIKEFVSRMDSFFLNCLPV 235

Query: 486  TSNATRVRETT------SKLMFDERTRAYKRLVDFKGEVNELGVRVRECLSASK---IHS 334
            T N  RV E T        L+FD+ +RAYK+LVDF+G  NEL  RV +CL  SK   + S
Sbjct: 236  TPNNHRVTEITHALSNGQTLIFDQHSRAYKKLVDFRGTANELSCRVLDCLKTSKASNLRS 295

Query: 333  DNSSNVDI---KSGSKWLKDVILSKRSDHSFRMVVVGDPNIKLGDIGMPQNICQALVISE 163
            + S++ D     SG KW+K+V+L KR++HSFRM+VVGDP ++L +IG+P +I + L+ISE
Sbjct: 296  EKSTSKDSASKMSGLKWIKEVLLGKRTNHSFRMIVVGDPKLRLSEIGIPCHIAEELLISE 355

Query: 162  TLNDHNKERLYDYCNWSLLEMGGFRVRRKDNLVIFRNPNDLEIGDTVYRHLDEG 1
             LN  N E++ + CN  LLE G   VRRK  L   R  ND + GD +YR L +G
Sbjct: 356  HLNSWNWEKVTNGCNLRLLEKGQTYVRRKGTLAPVRRMNDFQAGDIIYRPLTDG 409


>ref|XP_010278507.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
            [Nelumbo nucifera]
          Length = 1489

 Score =  366 bits (939), Expect = 3e-98
 Identities = 189/422 (44%), Positives = 265/422 (62%), Gaps = 20/422 (4%)
 Frame = -3

Query: 1206 MDGGTIIEQVVPLAVLTHIKFSVLTEGDIEKLSVLSINIAADVTNAKLGLPNEASECFTC 1027
            MD    IEQ VP   L  I+F+VLTE DIEK SV +I+ A +VT+ +LG PN  S+C TC
Sbjct: 1    MDDDVFIEQQVPSGFLKGIQFNVLTEEDIEKCSVTAIDAANEVTDPRLGFPNPLSQCSTC 60

Query: 1026 GARDTKKCDGHFGFIKLPMDICHPYYVSELVKILNSICPACKCNKSEXXXXXXXXXXXXX 847
            G ++ K CDGH G IK  +++ +P+++SE V+ILNSICP C+  + +             
Sbjct: 61   GGKNLKNCDGHIGIIKFAVNVLNPFFISETVQILNSICPGCRSVRHD-LKIKDTDTLKSL 119

Query: 846  XTPNHQPKSCNYC--RGNSENWWPKITFKATSK--VGKMALTVSADVNEKLPKKFHNKKL 679
               +HQ K C YC  +G+S+ W+P + FK  SK    K   +V  +VNEKLPKKF NK L
Sbjct: 120  TMDSHQYKDCKYCAKQGSSKEWYPTMKFKVASKDLSKKNTSSVIVEVNEKLPKKFANKNL 179

Query: 678  SDVFPPDYWSIIERDPSQEDMYLNSNSRCLTAYQVYYLLKDIDPTSIEKFVRGRESLFLT 499
             +V P DYW  I++DP QE+ +L  N R L+ +QVY LLK +D   ++KFV   E++FL+
Sbjct: 180  GEVLPTDYWDCIQKDPEQEESFLKPNRRSLSPFQVYCLLKSVDLRFLKKFVLRPEAIFLS 239

Query: 498  CVPVTSNATRVRETT------SKLMFDERTRAYKRLVDFKGEVNELGVRVRECLSASKIH 337
            C PVT N  R+ E T       +L FDERT+A K+L+D K   NEL + VR CLS SK+H
Sbjct: 240  CFPVTPNCHRIMELTHLSSNGHQLAFDERTKAMKKLIDSKRHANELSLHVRNCLSVSKLH 299

Query: 336  SDNS----------SNVDIKSGSKWLKDVILSKRSDHSFRMVVVGDPNIKLGDIGMPQNI 187
            +D S           +V    G KW+K+++L KR+D++FRM V+GDP I L +IG+P+ +
Sbjct: 300  TDKSLKKDTVLGKNDSVSSMCGLKWIKEIMLGKRTDYAFRMTVIGDPKISLCEIGVPRMV 359

Query: 186  CQALVISETLNDHNKERLYDYCNWSLLEMGGFRVRRKDNLVIFRNPNDLEIGDTVYRHLD 7
             + L I E LN HN E+L ++  + L+E G F +RRK  LV   + ++L++GD VYRHLD
Sbjct: 360  AENLQIPEYLNVHNWEKLINHLKFHLIEKGRFFIRRKGKLVQLCDTSELKLGDIVYRHLD 419

Query: 6    EG 1
            +G
Sbjct: 420  DG 421


>emb|CBI34757.3| unnamed protein product [Vitis vinifera]
          Length = 1359

 Score =  357 bits (917), Expect = 1e-95
 Identities = 188/408 (46%), Positives = 249/408 (61%), Gaps = 6/408 (1%)
 Frame = -3

Query: 1206 MDGGTIIEQVVPLAVLTHIKFSVLTEGDIEKLSVLSINIAADVTNAKLGLPNEASECFTC 1027
            MD   + EQ VP  +L  IKF V TE D+EK+SV+ I+   ++T+ KLG+PN + +C TC
Sbjct: 1    MDNDFLEEQQVPSGLLIGIKFDVSTEEDMEKISVMKIDAVNEITDPKLGVPNPSCQCSTC 60

Query: 1026 GARDTKKCDGHFGFIKLPMDICHPYYVSELVKILNSICPACKCNKSEXXXXXXXXXXXXX 847
            GA+DTKKC+GHFG IK P  I HPY+++E+V+ILN ICP CK  +               
Sbjct: 61   GAKDTKKCEGHFGVIKFPFTILHPYFLTEVVQILNKICPGCKSTRQGQWVKVRRL----- 115

Query: 846  XTPNHQPKSCNYCRGNSENWWPKITFKATSKVGKMALTVSADVNEKLPKKFHNKKLSDVF 667
                 + K C YC  NS +W+P + FK +SK       +  ++NEKLPKK   K    V 
Sbjct: 116  -----RSKGCKYCAANSNDWYPTMKFKVSSKDLFRKTAIIVEMNEKLPKKLQKKSFRPVL 170

Query: 666  PPDYWSIIERDPSQEDMYLNSNSRCLTAYQVYYLLKDIDPTSIEKFVRGRESLFLTCVPV 487
            P DYW  I +DP QE+  LN N R L+  QV+YLLKDIDP  I++FV   +S FL C+PV
Sbjct: 171  PLDYWDFIPKDPQQEENCLNPNRRVLSHAQVHYLLKDIDPGFIKEFVSRMDSFFLNCLPV 230

Query: 486  TSNATRVRETT------SKLMFDERTRAYKRLVDFKGEVNELGVRVRECLSASKIHSDNS 325
            T N  RV E T        L+FD+ +RAYK+LVDF+G  NEL      C SASK+     
Sbjct: 231  TPNNHRVTEITHALSNGQTLIFDQHSRAYKKLVDFRGTANEL-----SCHSASKM----- 280

Query: 324  SNVDIKSGSKWLKDVILSKRSDHSFRMVVVGDPNIKLGDIGMPQNICQALVISETLNDHN 145
                  SG KW+K+V+L KR++HSFRM+VVGDP ++L +IG+P +I + L+ISE LN  N
Sbjct: 281  ------SGLKWIKEVLLGKRTNHSFRMIVVGDPKLRLSEIGIPCHIAEELLISEHLNSWN 334

Query: 144  KERLYDYCNWSLLEMGGFRVRRKDNLVIFRNPNDLEIGDTVYRHLDEG 1
             E++ + CN  LLE G   VRRK  L   R  ND + GD +YR L +G
Sbjct: 335  WEKVTNGCNLRLLEKGQTYVRRKGTLAPVRRMNDFQAGDIIYRPLTDG 382


>ref|XP_012087018.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Jatropha curcas]
          Length = 1453

 Score =  355 bits (912), Expect = 4e-95
 Identities = 191/415 (46%), Positives = 250/415 (60%), Gaps = 20/415 (4%)
 Frame = -3

Query: 1185 EQVVPLAVLTHIKFSVLTEGDIEKLSVLSINIAADVTNAKLGLPNEASECFTCGARDTKK 1006
            EQ VP A+LT + F + TE + EKLSVL+I+   +VT+ KLGLPN +  C TCG++D+K 
Sbjct: 8    EQQVPSALLTALSFGISTEAEKEKLSVLAIDAVGEVTDPKLGLPNPSFRCSTCGSKDSKF 67

Query: 1005 CDGHFGFIKLPMDICHPYYVSELVKILNSICPACKCNKSEXXXXXXXXXXXXXXTPNHQP 826
            C+GHFG IK P  I HPYY+SE+VKILN +CP CK  + E              +  +  
Sbjct: 68   CEGHFGVIKFPFTIVHPYYLSEVVKILNKVCPGCKSIRKE-------SKRTDSKSKENLH 120

Query: 825  KSCNYCRGNSENWWPKITFKATSKVGKMALTVSADVNEKLPKKFHNKKLSDVFPPDYWSI 646
            K C YC GN+   +P + F  +S+       + A ++E+ P+  H +        DYW I
Sbjct: 121  KGCKYCVGNTIGGYPTMKFSVSSEEIFRKNVIIAKISERPPQNSHKRGRKKRLAADYWDI 180

Query: 645  IERDPSQEDMYLNSNSRCLTAYQVYYLLKDIDPTSIEKFVRGRESLFLTCVPVTSNATRV 466
            I +D  QE+  L  N R LT  QV +LLKD+DP  I+KFV   +S+FL C PVT N  RV
Sbjct: 181  IPKDEQQEENTLRPNQRVLTHAQVRHLLKDVDPNFIKKFVLKTDSIFLNCFPVTPNCHRV 240

Query: 465  RETT------SKLMFDERTRAYKRLVDFKGEVNELGVRVRECLSASKIHSDNSSNVD--- 313
             E T       +L+FDERTRAYK+LVDF+G   EL  RV +CL  SK++ DNS N D   
Sbjct: 241  TEVTHAFSNGQRLVFDERTRAYKKLVDFRGTAKELSFRVLDCLKTSKLNPDNSVNNDDMY 300

Query: 312  -----------IKSGSKWLKDVILSKRSDHSFRMVVVGDPNIKLGDIGMPQNICQALVIS 166
                         SG +W+KDV+L KR+D+SFRMVVVGDPNIKL +IG+P +I + L +S
Sbjct: 301  ALQRKINDSASNSSGLRWVKDVVLGKRNDNSFRMVVVGDPNIKLSEIGIPCHIAERLQVS 360

Query: 165  ETLNDHNKERLYDYCNWSLLEMGGFRVRRKDNLVIFRNPNDLEIGDTVYRHLDEG 1
            E L   N+ERL   C   LLE G   VRR+ NLV  R   DL IGD +YR L++G
Sbjct: 361  EHLTKWNRERLTTCCEVRLLEKGEMHVRREGNLVRVRRTKDLRIGDIIYRPLNDG 415


>ref|XP_010053343.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Eucalyptus
            grandis] gi|702324654|ref|XP_010053344.1| PREDICTED:
            DNA-directed RNA polymerase IV subunit 1 [Eucalyptus
            grandis] gi|702324662|ref|XP_010053345.1| PREDICTED:
            DNA-directed RNA polymerase IV subunit 1 [Eucalyptus
            grandis] gi|702324668|ref|XP_010053346.1| PREDICTED:
            DNA-directed RNA polymerase IV subunit 1 [Eucalyptus
            grandis] gi|702324674|ref|XP_010053347.1| PREDICTED:
            DNA-directed RNA polymerase IV subunit 1 [Eucalyptus
            grandis] gi|702324680|ref|XP_010053348.1| PREDICTED:
            DNA-directed RNA polymerase IV subunit 1 [Eucalyptus
            grandis] gi|702324687|ref|XP_010053349.1| PREDICTED:
            DNA-directed RNA polymerase IV subunit 1 [Eucalyptus
            grandis] gi|629112658|gb|KCW77618.1| hypothetical protein
            EUGRSUZ_D01929 [Eucalyptus grandis]
          Length = 1473

 Score =  345 bits (885), Expect = 5e-92
 Identities = 184/424 (43%), Positives = 256/424 (60%), Gaps = 22/424 (5%)
 Frame = -3

Query: 1206 MDGGTIIEQVVPLAVLTHIKFSVLTEGDIEKLSVLSINIAADVTNAKLGLPNEASECFTC 1027
            MD     EQ VP AVLT + F+VL+  + EK+S ++I    +V++++LGLPN + +C TC
Sbjct: 1    MDNDFCEEQQVPSAVLTGVVFNVLSCREAEKISSITIESVGEVSDSRLGLPNSSGQCSTC 60

Query: 1026 GARDTKKCDGHFGFIKLPMDICHPYYVSELVKILNSICPACKCNKSEXXXXXXXXXXXXX 847
            GA+D K+C+GHFG IKLP  I HPY++SE+ K+LN ICP CK  + +             
Sbjct: 61   GAKDLKQCEGHFGSIKLPCTILHPYFLSEVAKLLNKICPGCKSVRQDLRVKKSGPGQV-- 118

Query: 846  XTPNHQPKSCNYCRGNSENWWPKITFKATSK--VGKMALTVSADVNEKLPKKFHNKKLSD 673
               +H  + C YC     +++P + FK +SK    + A+ V  D + +  +K  N++   
Sbjct: 119  ---HHGTRGCKYCLPTQVDYYPPMKFKVSSKDLFRRTAIIVEVDESFRNTQKKLNRR--- 172

Query: 672  VFPPDYWSIIERDPSQEDMYLNSNSRCLTAYQVYYLLKDIDPTSIEKFVRGRESLFLTCV 493
            ++P DYW  I ++P QE+  L  N R L+  QVY+LL  +DPT I KF+  ++SLFL C 
Sbjct: 173  IWPSDYWDFIPKNPEQEESSLKPNRRVLSHAQVYHLLNGVDPTFIRKFISRQDSLFLNCF 232

Query: 492  PVTSNATRVRETT------SKLMFDERTRAYKRLVDFKGEVNELGVRVRECLSASKIHSD 331
            PVT N  RV E T       +L+ D+RTR YK+LVDF+G  NELG RV ECL  SK++ D
Sbjct: 233  PVTPNGHRVTEATHAFSHGQRLVLDDRTRVYKKLVDFRGTANELGSRVLECLKVSKLNPD 292

Query: 330  NSSNVD--------------IKSGSKWLKDVILSKRSDHSFRMVVVGDPNIKLGDIGMPQ 193
              SN +                SG +W+KDV+L KRSD+ FRMVV G+PNIKL +IG+P 
Sbjct: 293  KLSNTESAFAQNRKSRDLDFTSSGLRWMKDVVLGKRSDYCFRMVVTGNPNIKLSEIGVPC 352

Query: 192  NICQALVISETLNDHNKERLYDYCNWSLLEMGGFRVRRKDNLVIFRNPNDLEIGDTVYRH 13
            +I + L +SETLN  N E+L   C+  LLE GG  VRRK  LV   +  +L  GDT+YR 
Sbjct: 353  HIAERLQVSETLNKWNCEKLNAVCSLLLLERGGMLVRRKGRLVRISHMKELLFGDTIYRP 412

Query: 12   LDEG 1
            L +G
Sbjct: 413  LSDG 416


>ref|XP_011650447.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
            [Cucumis sativus] gi|778675671|ref|XP_011650448.1|
            PREDICTED: DNA-directed RNA polymerase IV subunit 1
            isoform X1 [Cucumis sativus]
            gi|778675673|ref|XP_011650449.1| PREDICTED: DNA-directed
            RNA polymerase IV subunit 1 isoform X1 [Cucumis sativus]
            gi|700200830|gb|KGN55963.1| hypothetical protein
            Csa_3G039340 [Cucumis sativus]
          Length = 1483

 Score =  340 bits (873), Expect = 1e-90
 Identities = 178/415 (42%), Positives = 252/415 (60%), Gaps = 20/415 (4%)
 Frame = -3

Query: 1185 EQVVPLAVLTHIKFSVLTEGDIEKLSVLSINIAADVTNAKLGLPNEASECFTCGARDTKK 1006
            E  +P  +LT I FSV  + DIE ++V++++ A +V++ KLGLPN + +C TCGA   K 
Sbjct: 24   ELPIPSGLLTGINFSVSNQQDIENIAVITVDAANEVSDPKLGLPNPSYQCTTCGASSLKF 83

Query: 1005 CDGHFGFIKLPMDICHPYYVSELVKILNSICPACKCNKSEXXXXXXXXXXXXXXTPNHQP 826
            C+GHFG IK P  I HPY++SE+ ++LN +CP CK  + E                 ++P
Sbjct: 84   CEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSVRQELWGKVEDPTSDY-----NRP 138

Query: 825  KSCNYCRGNSENWWPKITFK-ATSKVGKMALTVSADVNEKLPKKFHNKKLSDVFPPDYWS 649
            K C YC G+ ++W+P + FK +T+ + K ++ +  +V E + KK+  +      P DYW 
Sbjct: 139  KGCRYCFGSLKDWYPPMRFKLSTTDMFKKSM-IMVEVKENMSKKYQKRVAKGGLPSDYWD 197

Query: 648  IIERDPSQEDMYLNSNSRCLTAYQVYYLLKDIDPTSIEKFVRGRESLFLTCVPVTSNATR 469
             I +D  QE+ Y   N + LT  QV+YLLKDIDP  ++KFV   +SLFL   PVT N+ R
Sbjct: 198  FIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPAIDSLFLNSFPVTPNSHR 257

Query: 468  VRETT------SKLMFDERTRAYKRLVDFKGEVNELGVRVRECLSASKIHSDNSSNVDI- 310
            V E         +L+FDERTRAYK++VDF+G  NELG RV +CL  SK+  +   N D+ 
Sbjct: 258  VTEMAHSFSNGQRLIFDERTRAYKKVVDFRGTANELGSRVLDCLKISKLSPEKLQNKDLV 317

Query: 309  ------------KSGSKWLKDVILSKRSDHSFRMVVVGDPNIKLGDIGMPQNICQALVIS 166
                         SG +W+KDV+L KRSDH FRMVVVGDPNI+L +IG+P ++ + L IS
Sbjct: 318  YQQKKIKDTATSSSGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAERLQIS 377

Query: 165  ETLNDHNKERLYDYCNWSLLEMGGFRVRRKDNLVIFRNPNDLEIGDTVYRHLDEG 1
            E L+  N ++L   C   L+E G   VRR+  LV  RN  +L +GDT+YR L +G
Sbjct: 378  EHLSSWNMKKLSTSCYLHLVEKGEIYVRREGRLVRVRNVLELNMGDTIYRPLADG 432


>ref|XP_011014513.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like [Populus
            euphratica] gi|743940107|ref|XP_011014514.1| PREDICTED:
            DNA-directed RNA polymerase IV subunit 1-like [Populus
            euphratica] gi|743940109|ref|XP_011014516.1| PREDICTED:
            DNA-directed RNA polymerase IV subunit 1-like [Populus
            euphratica] gi|743940111|ref|XP_011014517.1| PREDICTED:
            DNA-directed RNA polymerase IV subunit 1-like [Populus
            euphratica] gi|743940113|ref|XP_011014518.1| PREDICTED:
            DNA-directed RNA polymerase IV subunit 1-like [Populus
            euphratica] gi|743940115|ref|XP_011014519.1| PREDICTED:
            DNA-directed RNA polymerase IV subunit 1-like [Populus
            euphratica] gi|743940117|ref|XP_011014520.1| PREDICTED:
            DNA-directed RNA polymerase IV subunit 1-like [Populus
            euphratica] gi|743940119|ref|XP_011014522.1| PREDICTED:
            DNA-directed RNA polymerase IV subunit 1-like [Populus
            euphratica]
          Length = 1488

 Score =  338 bits (868), Expect = 5e-90
 Identities = 183/417 (43%), Positives = 248/417 (59%), Gaps = 22/417 (5%)
 Frame = -3

Query: 1185 EQVVPLAVLTHIKFSVLTEGDIEKLSVLSINIAADVTNAKLGLPNEASECFTCGARDTKK 1006
            E  VP A++T I F VLTE D+EKLSVL+I+  ++VTN KLGLPN +S+C TCG+RD K 
Sbjct: 8    EHQVPSALITGIAFGVLTEADMEKLSVLNIDALSEVTNPKLGLPNPSSQCPTCGSRDLKS 67

Query: 1005 CDGHFGFIKLPMDICHPYYVSELVKILNSICPACKCNKSEXXXXXXXXXXXXXXTPNHQP 826
            C+GHFG I  P  I HPY++SE+V+ILN ICP CK  +                  N Q 
Sbjct: 68   CEGHFGVINFPYTIVHPYFLSEVVQILNKICPGCKSIR-------LAKATELITKENPQR 120

Query: 825  KSCNYCRGNSENWWPKITFKATSKVGKMALTVSADVNEKLPKKFHNKKLSDVFPPDYWSI 646
            K C YC GNS  W+P + FK +SK       + A++ E L  K   K    +   DYW I
Sbjct: 121  KGCKYCAGNSLGWYPPMKFKVSSKEIFRKTAIIAEIRETLSNK-PQKGFKKILAADYWDI 179

Query: 645  IERDPSQEDMYLNS--NSRCLTAYQVYYLLKDIDPTSIEKFVRGRESLFLTCVPVTSNAT 472
              +D  +E+   N+  N R L+  QV ++LKD+DP  I+  +    ++FL C PVT N+ 
Sbjct: 180  FPKDEQEEEEETNAKPNRRVLSHSQVRHMLKDVDPNLIKLSILKTNTIFLNCFPVTPNSH 239

Query: 471  RVRETT------SKLMFDERTRAYKRLVDFKGEVNELGVRVRECLSASKIHSDNSSNVD- 313
            RV E T       +L+FDERTRAYK++VDF+G  N L   V +CL  SK++ D S N+D 
Sbjct: 240  RVTEVTHAFSNGQRLIFDERTRAYKKMVDFRGVANTLSFHVMDCLKTSKLNPDKSGNIDP 299

Query: 312  -------------IKSGSKWLKDVILSKRSDHSFRMVVVGDPNIKLGDIGMPQNICQALV 172
                           SG +W+KDVIL KR+DHSFRMV+VGDPN++L +IG+P +I + L 
Sbjct: 300  WTAQPKKSNDYVNNASGLRWIKDVILGKRNDHSFRMVLVGDPNLQLHEIGIPCHIAERLQ 359

Query: 171  ISETLNDHNKERLYDYCNWSLLEMGGFRVRRKDNLVIFRNPNDLEIGDTVYRHLDEG 1
            +SE+L   N E+L      S  E G   VRR+ NLV  R+  +L +GD +YR L++G
Sbjct: 360  VSESLTAWNWEKLNACFEKSRFEKGDMHVRREGNLVRVRHMKELRLGDIIYRPLNDG 416


>ref|XP_011029161.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Populus
            euphratica] gi|743852096|ref|XP_011029162.1| PREDICTED:
            DNA-directed RNA polymerase IV subunit 1 [Populus
            euphratica] gi|743852100|ref|XP_011029163.1| PREDICTED:
            DNA-directed RNA polymerase IV subunit 1 [Populus
            euphratica] gi|743852104|ref|XP_011029164.1| PREDICTED:
            DNA-directed RNA polymerase IV subunit 1 [Populus
            euphratica] gi|743852108|ref|XP_011029165.1| PREDICTED:
            DNA-directed RNA polymerase IV subunit 1 [Populus
            euphratica] gi|743852112|ref|XP_011029166.1| PREDICTED:
            DNA-directed RNA polymerase IV subunit 1 [Populus
            euphratica] gi|743852116|ref|XP_011029168.1| PREDICTED:
            DNA-directed RNA polymerase IV subunit 1 [Populus
            euphratica] gi|743852120|ref|XP_011029169.1| PREDICTED:
            DNA-directed RNA polymerase IV subunit 1 [Populus
            euphratica] gi|743852124|ref|XP_011029170.1| PREDICTED:
            DNA-directed RNA polymerase IV subunit 1 [Populus
            euphratica]
          Length = 1488

 Score =  338 bits (867), Expect = 6e-90
 Identities = 183/417 (43%), Positives = 247/417 (59%), Gaps = 22/417 (5%)
 Frame = -3

Query: 1185 EQVVPLAVLTHIKFSVLTEGDIEKLSVLSINIAADVTNAKLGLPNEASECFTCGARDTKK 1006
            E  VP A++T I F VLTE D+EKLSVL+I+  ++VTN KLGLPN +S+C TCG+RD K 
Sbjct: 8    EHQVPSALITGIAFGVLTEADMEKLSVLNIDALSEVTNPKLGLPNPSSQCPTCGSRDLKS 67

Query: 1005 CDGHFGFIKLPMDICHPYYVSELVKILNSICPACKCNKSEXXXXXXXXXXXXXXTPNHQP 826
            C+GHFG I  P  I HPY++SE+V+ILN ICP CK  +                  N Q 
Sbjct: 68   CEGHFGVINFPYTIVHPYFLSEVVQILNKICPGCKSIR-------LAKATELITKENPQR 120

Query: 825  KSCNYCRGNSENWWPKITFKATSKVGKMALTVSADVNEKLPKKFHNKKLSDVFPPDYWSI 646
            K C YC GNS  W+P + FK +SK       + A++ E L  K   K    +   DYW I
Sbjct: 121  KGCKYCAGNSLGWYPPMKFKVSSKEIFRKTAIIAEIRETLSNK-PQKGFKKILAADYWDI 179

Query: 645  IERDPSQEDMYLNS--NSRCLTAYQVYYLLKDIDPTSIEKFVRGRESLFLTCVPVTSNAT 472
              +D  +E+   N+  N R L+  QV ++LKD+DP  I+  +    ++FL C PVT N+ 
Sbjct: 180  FPKDEQEEEEETNAKPNRRVLSHSQVRHMLKDVDPNLIKLSILKTNTIFLNCFPVTPNSH 239

Query: 471  RVRETT------SKLMFDERTRAYKRLVDFKGEVNELGVRVRECLSASKIHSDNSSNVD- 313
            RV E T       +L+FD RTRAYK++VDF+G  N L   V +CL  SK++ D S N+D 
Sbjct: 240  RVTEVTHAFSNGQRLIFDARTRAYKKMVDFRGVANTLSFHVMDCLKTSKLNPDKSGNIDP 299

Query: 312  -------------IKSGSKWLKDVILSKRSDHSFRMVVVGDPNIKLGDIGMPQNICQALV 172
                           SG +W+KDVIL KR+DHSFRMV+VGDPN++L +IG+P +I + L 
Sbjct: 300  WTAQPKKSNDYVNNASGLRWIKDVILGKRNDHSFRMVLVGDPNLQLHEIGIPCHIAERLQ 359

Query: 171  ISETLNDHNKERLYDYCNWSLLEMGGFRVRRKDNLVIFRNPNDLEIGDTVYRHLDEG 1
            +SE+L   N E+L      S  E G   VRR+ NLV  R+  +L +GD +YR LD+G
Sbjct: 360  VSESLTAWNWEKLNACFEKSRFEKGDMHVRREGNLVRVRHMKELRLGDIIYRPLDDG 416


>ref|XP_008448971.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase IV
            subunit 1 [Cucumis melo]
          Length = 1489

 Score =  330 bits (846), Expect = 2e-87
 Identities = 176/419 (42%), Positives = 247/419 (58%), Gaps = 24/419 (5%)
 Frame = -3

Query: 1185 EQVVPLAVLTHIKFSVLTEGDIEKLSVLSINIAADVTNAKLGLPNEASECFTCGARDTKK 1006
            E  +P   LT I FSV  + DIE ++V++++ A++V++ KLGLPN + +C TCGA   K 
Sbjct: 24   ELPIPSGRLTGINFSVSNQQDIENIAVITVDAASEVSDPKLGLPNPSYQCTTCGASSLKF 83

Query: 1005 CDGHFGFIKLPMDICHPYYVSELVKILNSICPACKCNKSEXXXXXXXXXXXXXXTPNHQP 826
            C+GHFG IK P  I HPY++SE+ ++LN +CP CK  + E                 ++P
Sbjct: 84   CEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSIRQELWGKVEDPTSDY-----NRP 138

Query: 825  KSCNYCRGNSENWWPKITFK-ATSKVGKMALTVSADVNEKLPKKFHNKKLSDVFPPDYWS 649
            K C YC G+ ++W+P + FK +T+ + K ++ +  +V E + KK+  +      P DYW 
Sbjct: 139  KGCRYCFGSLKDWYPPMRFKLSTTDMFKKSM-IMVEVKENMSKKYQKRVAKGGLPSDYWD 197

Query: 648  IIERDPSQEDMYLNSNSRCLTAYQVYYLLKDIDPTSIEKFVRGRESLFLTCVPVTSNATR 469
             I +D  QE+ Y   N + LT  QV+YLLKDIDP  ++KFV   +SLFL   PVT N+ R
Sbjct: 198  FIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPAIDSLFLNSFPVTPNSHR 257

Query: 468  VRETT------SKLMFDERTRAYKRLVDFKGEVNELGVRVRECLSASKI----------- 340
            V E         +L+FDERTRAYK++VDF+G  NELG RV +CL  SK            
Sbjct: 258  VTEMAHSFSNGQRLIFDERTRAYKKVVDFRGTANELGSRVLDCLKISKAIYKIFPREVTK 317

Query: 339  ------HSDNSSNVDIKSGSKWLKDVILSKRSDHSFRMVVVGDPNIKLGDIGMPQNICQA 178
                             SG +W+KDV+L KRSDH FRMVVVGDPNI+L +IG+P ++ + 
Sbjct: 318  XRFGLPAKKIKDTATSSSGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAER 377

Query: 177  LVISETLNDHNKERLYDYCNWSLLEMGGFRVRRKDNLVIFRNPNDLEIGDTVYRHLDEG 1
            L ISE L+  N ++L   C   L+E G   VRR+  LV  RN  +L +GDT+YR L +G
Sbjct: 378  LQISEHLSSWNMKKLSTSCYLHLVEKGEIYVRREGRLVRVRNVLELNMGDTIYRPLADG 436


>ref|XP_007040111.1| DNA-directed RNA polymerase II subunit RPB1-B, putative [Theobroma
            cacao] gi|508777356|gb|EOY24612.1| DNA-directed RNA
            polymerase II subunit RPB1-B, putative [Theobroma cacao]
          Length = 1484

 Score =  328 bits (842), Expect = 5e-87
 Identities = 176/425 (41%), Positives = 248/425 (58%), Gaps = 21/425 (4%)
 Frame = -3

Query: 1212 SSMDGGTIIEQVVPLAVLTHIKFSVLTEGDIEKLSVLSINIAADVTNAKLGLPNEASECF 1033
            +SM+      + +P A +T I+F+V  + D EK+SV+ I   ++V++ KLG PN ++ C 
Sbjct: 2    TSMENDLYEAEQLPAAFVTGIRFNVSNDRDNEKMSVMEIAAPSEVSDPKLGFPNFSNHCT 61

Query: 1032 TCGARDTKKCDGHFGFIKLPMDICHPYYVSELVKILNSICPACKCNKSEXXXXXXXXXXX 853
            TCGA D K C+GHFG I  P  I HPY++SE+V+ILN ICP CK  + +           
Sbjct: 62   TCGAADMKHCEGHFGVINFPYAILHPYFLSEVVQILNKICPGCKSVRKDLRIKGANSVSK 121

Query: 852  XXXTPNHQPKSCNYCRGNSENWWPKITFKATSKVGKMALTVSADVNEKLPKKFHNKKLSD 673
                  +Q K C YC GNS +W+P + FK +SK       +  +V+EK   K   K+   
Sbjct: 122  V-----NQRKGCKYCVGNSIDWYPPMNFKISSKDLFRKSAIIVEVSEKSSMKV-RKRGKQ 175

Query: 672  VFPPDYWSIIERDPSQEDMYLNSNSRCLTAYQVYYLLKDIDPTSIEKFVRGRESLFLTCV 493
              P DYW  I +D  QE+  +  N R L+  QV YLLKD+DP  I+KFV   +S+FL C 
Sbjct: 176  ALPSDYWDFIPKDEQQEESLIRPNRRVLSHSQVRYLLKDVDPEFIKKFVLSMDSIFLNCF 235

Query: 492  PVTSNATRVRE------TTSKLMFDERTRAYKRLVDFKGEVNELGVRVRECLSASKIHSD 331
            PVT N+ RV E         +L+FD+RTR YK+L DF+G  NEL   V ECL  SK+H +
Sbjct: 236  PVTPNSHRVTEIMHASSNGQRLIFDQRTRVYKKLADFRGIANELSSHVLECLKISKLHLE 295

Query: 330  NSSNVDI---------------KSGSKWLKDVILSKRSDHSFRMVVVGDPNIKLGDIGMP 196
              SN +                 SG +++KDVIL KR+DH FRMV+ G+PN+KL +I +P
Sbjct: 296  KPSNEESALVLAQKRNKDSASNMSGLRYMKDVILGKRNDHCFRMVLTGNPNLKLSEISIP 355

Query: 195  QNICQALVISETLNDHNKERLYDYCNWSLLEMGGFRVRRKDNLVIFRNPNDLEIGDTVYR 16
             ++ + L I+E LN+ N+ERL   C+  LLE G   VRR+  LV  R+   L++GDT++R
Sbjct: 356  CHVAERLQIAEQLNNWNEERLKACCDLRLLEKGEIHVRREGRLVRIRHNEKLQVGDTIFR 415

Query: 15   HLDEG 1
             L+ G
Sbjct: 416  PLNNG 420


>ref|XP_006440521.1| hypothetical protein CICLE_v10018489mg [Citrus clementina]
            gi|557542783|gb|ESR53761.1| hypothetical protein
            CICLE_v10018489mg [Citrus clementina]
          Length = 1443

 Score =  326 bits (836), Expect = 3e-86
 Identities = 184/413 (44%), Positives = 244/413 (59%), Gaps = 21/413 (5%)
 Frame = -3

Query: 1176 VPLAVLTHIKFSVLTEGDIEKLSVLSINIAADVTNAKLGLPNEASECFTCGARDTKKCDG 997
            VP  +LT I   + T+ + EKLSV+ I   ++VTN +LGLPN  +EC +CGA+D K C+G
Sbjct: 12   VPSGILTGISLGISTDTEKEKLSVMEIGAVSEVTNPRLGLPNPTNECSSCGAKDRKACEG 71

Query: 996  HFGFIKLPMDICHPYYVSELVKILNSICPACKCNKSEXXXXXXXXXXXXXXTPNHQPKSC 817
            HFGFIK P  I HPY++S++ K+LNSICP CK  + E                  QP+ C
Sbjct: 72   HFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSR-------KEQPRVC 124

Query: 816  NYCRGNSENWWPKITFKATSK--VGKMALTVSADVNEKLPKKFHNKKLSDVFPPDYWSII 643
             YC  N   W+P++ FK +SK   GK A+ V  +++EKL KK  NKKL    P DYW  I
Sbjct: 125  KYCVRNPAQWYPRMRFKLSSKDLSGKTAIIV--EIDEKLSKK--NKKL----PDDYWGFI 176

Query: 642  ERDPSQEDMYLNSNSRCLTAYQVYYLLKDIDPTSIEKFVRGRESLFLTCVPVTSNATRVR 463
              D  QE+  +  N + L+  QV YLLKD+DP+  E+F+  +++ FL C PVT N  RV 
Sbjct: 177  PFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLKCFPVTPNNHRVT 236

Query: 462  ET------TSKLMFDERTRAYKRLVDFKGEVNELGVRVRECLSASKIHSDNSS------- 322
            E         KL FD  TR  K++VD++G   EL   V++CL  SK+H D SS       
Sbjct: 237  EVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIELSHLVQDCLKISKLHLDKSSRKDSAEV 296

Query: 321  ----NVDI--KSGSKWLKDVILSKRSDHSFRMVVVGDPNIKLGDIGMPQNICQALVISET 160
                N+DI   SG +W+KDV+L KR+D  FRMVV GDPNIKL +IG+P  + + L ISE 
Sbjct: 297  RQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISER 356

Query: 159  LNDHNKERLYDYCNWSLLEMGGFRVRRKDNLVIFRNPNDLEIGDTVYRHLDEG 1
            LN  N ERL    ++ LLE G   V RK  LV  R  + LE+GD +YR L +G
Sbjct: 357  LNSWNWERLSVCISFRLLEKGELYVCRKGGLVRIRRIDALELGDIIYRPLTDG 409


>ref|XP_006477376.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X2
            [Citrus sinensis] gi|568847098|ref|XP_006477377.1|
            PREDICTED: DNA-directed RNA polymerase IV subunit 1-like
            isoform X3 [Citrus sinensis]
            gi|568847100|ref|XP_006477378.1| PREDICTED: DNA-directed
            RNA polymerase IV subunit 1-like isoform X4 [Citrus
            sinensis]
          Length = 1443

 Score =  324 bits (830), Expect = 1e-85
 Identities = 183/413 (44%), Positives = 244/413 (59%), Gaps = 21/413 (5%)
 Frame = -3

Query: 1176 VPLAVLTHIKFSVLTEGDIEKLSVLSINIAADVTNAKLGLPNEASECFTCGARDTKKCDG 997
            VP  +LT I   + T+ + EKLSV+ I   ++VTN +LGLPN  +EC +CGA+D K C+G
Sbjct: 12   VPSGILTGISLGISTDTEKEKLSVMEIGAVSEVTNPRLGLPNPTNECSSCGAKDRKACEG 71

Query: 996  HFGFIKLPMDICHPYYVSELVKILNSICPACKCNKSEXXXXXXXXXXXXXXTPNHQPKSC 817
            HFGFIK P  I HPY++S++ K+LNSICP CK  + E                  QP+ C
Sbjct: 72   HFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSR-------KEQPRVC 124

Query: 816  NYCRGNSENWWPKITFKATSK--VGKMALTVSADVNEKLPKKFHNKKLSDVFPPDYWSII 643
             YC  N   W+P++ FK +SK   GK A+ V  +++EK  KK  NKKL    P DYW  I
Sbjct: 125  KYCVRNPAQWYPRMRFKLSSKDLSGKTAIIV--EIDEKPSKK--NKKL----PDDYWGFI 176

Query: 642  ERDPSQEDMYLNSNSRCLTAYQVYYLLKDIDPTSIEKFVRGRESLFLTCVPVTSNATRVR 463
              D  QE+  +  N + L+  QV YLLKD+DP+  E+F+  +++ FL C PVT N  RV 
Sbjct: 177  PFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLKCFPVTPNNHRVT 236

Query: 462  ET------TSKLMFDERTRAYKRLVDFKGEVNELGVRVRECLSASKIHSDNSS------- 322
            E         KL FD  TR  K++VD++G   EL   V++CL  SK+H D SS       
Sbjct: 237  EVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIELSHLVQDCLKISKLHLDKSSRKDSAEV 296

Query: 321  ----NVDI--KSGSKWLKDVILSKRSDHSFRMVVVGDPNIKLGDIGMPQNICQALVISET 160
                N+DI   SG +W+KDV+L KR+D  FRMVV GDPNIKL +IG+P ++ + L ISE 
Sbjct: 297  RQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCHVAERLQISER 356

Query: 159  LNDHNKERLYDYCNWSLLEMGGFRVRRKDNLVIFRNPNDLEIGDTVYRHLDEG 1
            LN  N ERL    ++ LLE G   V RK  LV  R  + LE+GD +YR L +G
Sbjct: 357  LNSWNWERLSVCTSFRLLEKGELYVCRKGGLVRIRRIDALELGDIIYRPLTDG 409


>ref|XP_006477375.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
            [Citrus sinensis]
          Length = 1481

 Score =  324 bits (830), Expect = 1e-85
 Identities = 183/413 (44%), Positives = 244/413 (59%), Gaps = 21/413 (5%)
 Frame = -3

Query: 1176 VPLAVLTHIKFSVLTEGDIEKLSVLSINIAADVTNAKLGLPNEASECFTCGARDTKKCDG 997
            VP  +LT I   + T+ + EKLSV+ I   ++VTN +LGLPN  +EC +CGA+D K C+G
Sbjct: 50   VPSGILTGISLGISTDTEKEKLSVMEIGAVSEVTNPRLGLPNPTNECSSCGAKDRKACEG 109

Query: 996  HFGFIKLPMDICHPYYVSELVKILNSICPACKCNKSEXXXXXXXXXXXXXXTPNHQPKSC 817
            HFGFIK P  I HPY++S++ K+LNSICP CK  + E                  QP+ C
Sbjct: 110  HFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSR-------KEQPRVC 162

Query: 816  NYCRGNSENWWPKITFKATSK--VGKMALTVSADVNEKLPKKFHNKKLSDVFPPDYWSII 643
             YC  N   W+P++ FK +SK   GK A+ V  +++EK  KK  NKKL    P DYW  I
Sbjct: 163  KYCVRNPAQWYPRMRFKLSSKDLSGKTAIIV--EIDEKPSKK--NKKL----PDDYWGFI 214

Query: 642  ERDPSQEDMYLNSNSRCLTAYQVYYLLKDIDPTSIEKFVRGRESLFLTCVPVTSNATRVR 463
              D  QE+  +  N + L+  QV YLLKD+DP+  E+F+  +++ FL C PVT N  RV 
Sbjct: 215  PFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLKCFPVTPNNHRVT 274

Query: 462  ET------TSKLMFDERTRAYKRLVDFKGEVNELGVRVRECLSASKIHSDNSS------- 322
            E         KL FD  TR  K++VD++G   EL   V++CL  SK+H D SS       
Sbjct: 275  EVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIELSHLVQDCLKISKLHLDKSSRKDSAEV 334

Query: 321  ----NVDI--KSGSKWLKDVILSKRSDHSFRMVVVGDPNIKLGDIGMPQNICQALVISET 160
                N+DI   SG +W+KDV+L KR+D  FRMVV GDPNIKL +IG+P ++ + L ISE 
Sbjct: 335  RQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCHVAERLQISER 394

Query: 159  LNDHNKERLYDYCNWSLLEMGGFRVRRKDNLVIFRNPNDLEIGDTVYRHLDEG 1
            LN  N ERL    ++ LLE G   V RK  LV  R  + LE+GD +YR L +G
Sbjct: 395  LNSWNWERLSVCTSFRLLEKGELYVCRKGGLVRIRRIDALELGDIIYRPLTDG 447


>ref|XP_012476049.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X3
            [Gossypium raimondii]
          Length = 1300

 Score =  323 bits (827), Expect = 3e-85
 Identities = 174/425 (40%), Positives = 245/425 (57%), Gaps = 21/425 (4%)
 Frame = -3

Query: 1212 SSMDGGTIIEQVVPLAVLTHIKFSVLTEGDIEKLSVLSINIAADVTNAKLGLPNEASECF 1033
            +SM+  +  EQ    A LT IKF V  + D E +S+L I   ++V++ +LG PN ++ C 
Sbjct: 2    ASMESDSSEEQENSTAFLTGIKFHVSNDADNENMSILEITAPSEVSDPRLGFPNFSNHCT 61

Query: 1032 TCGARDTKKCDGHFGFIKLPMDICHPYYVSELVKILNSICPACKCNKSEXXXXXXXXXXX 853
            TC ARD K+C+GHFG IK P  I HP+++SE+V ILN ICP CK  + +           
Sbjct: 62   TCDARDMKQCEGHFGVIKFPYTILHPFFLSEVVHILNKICPGCKSIRKDLWMKGANSIAR 121

Query: 852  XXXTPNHQPKSCNYCRGNSENWWPKITFKATSKVGKMALTVSADVNEKLPKKFHNKKLSD 673
                   + K C YC GNS  W+P + FK TSK       +  +V+E    K   K+   
Sbjct: 122  LL-----ETKGCKYCVGNSIEWYPPMRFKITSKELFRKSAIMVEVSENSLMKVR-KRGRQ 175

Query: 672  VFPPDYWSIIERDPSQEDMYLNSNSRCLTAYQVYYLLKDIDPTSIEKFVRGRESLFLTCV 493
              P DYW  I +D  QE+ ++    R L+  QV +LLKD++P  I+KF+   +S+FL   
Sbjct: 176  ALPADYWDFIPKDQQQEEGFVKPGRRVLSHAQVRHLLKDVNPEFIKKFISEADSIFLNFF 235

Query: 492  PVTSNATRVRE------TTSKLMFDERTRAYKRLVDFKGEVNELGVRVRECLSASKIHSD 331
            PVT N+ RV E         +L+FDERTR YK+LVDF+G  NEL   V ECL  SK+H +
Sbjct: 236  PVTPNSHRVTEIMHTSSNAQRLIFDERTRVYKKLVDFRGLANELSSHVLECLKISKLHVE 295

Query: 330  NSSNVDIK---------------SGSKWLKDVILSKRSDHSFRMVVVGDPNIKLGDIGMP 196
              S  D                 SG +++KDVIL KR+DH FRMV+ G+PN+KL +IG+P
Sbjct: 296  KPSTEDSALIAALKKNKDSASNMSGLRYMKDVILGKRNDHCFRMVLTGNPNLKLSEIGIP 355

Query: 195  QNICQALVISETLNDHNKERLYDYCNWSLLEMGGFRVRRKDNLVIFRNPNDLEIGDTVYR 16
             ++ + L I+E LN  N+ERL   CN  +LE G  R+RR+  LV  R+   +++GDT+YR
Sbjct: 356  CHVAEKLQIAEQLNRWNEERLKTCCNLRILEKGEIRIRREGKLVRIRHNEKVQVGDTIYR 415

Query: 15   HLDEG 1
             L++G
Sbjct: 416  PLNDG 420


>ref|XP_012476045.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
            [Gossypium raimondii] gi|823152441|ref|XP_012476046.1|
            PREDICTED: DNA-directed RNA polymerase IV subunit 1-like
            isoform X1 [Gossypium raimondii]
            gi|763758424|gb|KJB25755.1| hypothetical protein
            B456_004G207300 [Gossypium raimondii]
            gi|763758426|gb|KJB25757.1| hypothetical protein
            B456_004G207300 [Gossypium raimondii]
          Length = 1481

 Score =  323 bits (827), Expect = 3e-85
 Identities = 174/425 (40%), Positives = 245/425 (57%), Gaps = 21/425 (4%)
 Frame = -3

Query: 1212 SSMDGGTIIEQVVPLAVLTHIKFSVLTEGDIEKLSVLSINIAADVTNAKLGLPNEASECF 1033
            +SM+  +  EQ    A LT IKF V  + D E +S+L I   ++V++ +LG PN ++ C 
Sbjct: 2    ASMESDSSEEQENSTAFLTGIKFHVSNDADNENMSILEITAPSEVSDPRLGFPNFSNHCT 61

Query: 1032 TCGARDTKKCDGHFGFIKLPMDICHPYYVSELVKILNSICPACKCNKSEXXXXXXXXXXX 853
            TC ARD K+C+GHFG IK P  I HP+++SE+V ILN ICP CK  + +           
Sbjct: 62   TCDARDMKQCEGHFGVIKFPYTILHPFFLSEVVHILNKICPGCKSIRKDLWMKGANSIAR 121

Query: 852  XXXTPNHQPKSCNYCRGNSENWWPKITFKATSKVGKMALTVSADVNEKLPKKFHNKKLSD 673
                   + K C YC GNS  W+P + FK TSK       +  +V+E    K   K+   
Sbjct: 122  LL-----ETKGCKYCVGNSIEWYPPMRFKITSKELFRKSAIMVEVSENSLMKVR-KRGRQ 175

Query: 672  VFPPDYWSIIERDPSQEDMYLNSNSRCLTAYQVYYLLKDIDPTSIEKFVRGRESLFLTCV 493
              P DYW  I +D  QE+ ++    R L+  QV +LLKD++P  I+KF+   +S+FL   
Sbjct: 176  ALPADYWDFIPKDQQQEEGFVKPGRRVLSHAQVRHLLKDVNPEFIKKFISEADSIFLNFF 235

Query: 492  PVTSNATRVRE------TTSKLMFDERTRAYKRLVDFKGEVNELGVRVRECLSASKIHSD 331
            PVT N+ RV E         +L+FDERTR YK+LVDF+G  NEL   V ECL  SK+H +
Sbjct: 236  PVTPNSHRVTEIMHTSSNAQRLIFDERTRVYKKLVDFRGLANELSSHVLECLKISKLHVE 295

Query: 330  NSSNVDIK---------------SGSKWLKDVILSKRSDHSFRMVVVGDPNIKLGDIGMP 196
              S  D                 SG +++KDVIL KR+DH FRMV+ G+PN+KL +IG+P
Sbjct: 296  KPSTEDSALIAALKKNKDSASNMSGLRYMKDVILGKRNDHCFRMVLTGNPNLKLSEIGIP 355

Query: 195  QNICQALVISETLNDHNKERLYDYCNWSLLEMGGFRVRRKDNLVIFRNPNDLEIGDTVYR 16
             ++ + L I+E LN  N+ERL   CN  +LE G  R+RR+  LV  R+   +++GDT+YR
Sbjct: 356  CHVAEKLQIAEQLNRWNEERLKTCCNLRILEKGEIRIRREGKLVRIRHNEKVQVGDTIYR 415

Query: 15   HLDEG 1
             L++G
Sbjct: 416  PLNDG 420


>ref|XP_010676559.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Beta vulgaris
            subsp. vulgaris] gi|731331244|ref|XP_010676560.1|
            PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Beta
            vulgaris subsp. vulgaris]
            gi|731331246|ref|XP_010676562.1| PREDICTED: DNA-directed
            RNA polymerase IV subunit 1 [Beta vulgaris subsp.
            vulgaris] gi|731331248|ref|XP_010676563.1| PREDICTED:
            DNA-directed RNA polymerase IV subunit 1 [Beta vulgaris
            subsp. vulgaris] gi|870860859|gb|KMT12167.1| hypothetical
            protein BVRB_5g101150 [Beta vulgaris subsp. vulgaris]
          Length = 1444

 Score =  322 bits (824), Expect = 6e-85
 Identities = 179/414 (43%), Positives = 245/414 (59%), Gaps = 12/414 (2%)
 Frame = -3

Query: 1206 MDGGTIIEQVVPLAVLTHIKFSVLTEGDIEKLSVLSINIAADVTNAKLGLPNEASECFTC 1027
            MD    I   VP  +L+ + F+VLTE D EK+SVL+I   A VT++KLG PN  SEC TC
Sbjct: 1    MDNDISIVNEVPDGILSGVHFNVLTEYDAEKISVLTIETPAGVTDSKLGFPNPTSECATC 60

Query: 1026 GARDTKKCDGHFGFIKLPMDICHPYYVSELVKILNSICPACKCNKSEXXXXXXXXXXXXX 847
            GAR  K+C+GHFG I  P  I HPY+VSE+V+ILN ICP CK  + E             
Sbjct: 61   GARSNKQCEGHFGVINFPYTIIHPYFVSEVVQILNKICPGCKSIRRERRAKGAKAGAKL- 119

Query: 846  XTPNHQPKSCNYCRGNSENWWPKITFKATSKVGKMALTVSADVNEKLPKKFHNKKLSDVF 667
                 Q + C YC G S    P I F+ ++        ++ ++NE+   KFH        
Sbjct: 120  ----DQLRGCKYCVGRS----PSIRFRVSTSDLFRKTAITVELNERPQSKFH-------- 163

Query: 666  PPDYWSIIERDPSQEDMYLNSNSRCLTAYQVYYLLKDIDPTSIEKFVRGRESLFLTCVPV 487
              D+W  I +D   E+  +N N R L+  QV++L+KD+DP+ I++FV   ++LFL C  V
Sbjct: 164  IDDFWDFIPKDVQVEES-VNKNKRVLSPAQVHHLIKDVDPSFIKEFVSRTDALFLNCFAV 222

Query: 486  TSNATRVRE------TTSKLMFDERTRAYKRLVDFKGEVNELGVRVRECLSASKIH---- 337
            T N  RV E      T  KL+FD+RTRA+++LVDF+G  NEL  RV +CL  SK+     
Sbjct: 223  TPNCHRVTELVHPFSTGQKLIFDDRTRAFRKLVDFRGAANELASRVLDCLKLSKLRLEKT 282

Query: 336  SDNSSNVDI--KSGSKWLKDVILSKRSDHSFRMVVVGDPNIKLGDIGMPQNICQALVISE 163
            +++S N+D+   S SKW+K+V+L+KRSDH  R VV GDPN+KL +IG+P  I + L IS+
Sbjct: 283  NNDSDNIDVLNTSASKWMKEVVLTKRSDHIIRSVVTGDPNLKLSEIGIPCYIAERLQISD 342

Query: 162  TLNDHNKERLYDYCNWSLLEMGGFRVRRKDNLVIFRNPNDLEIGDTVYRHLDEG 1
             LN  N E+L   CN  LLE G   VRRK NLV      + + GD ++R L++G
Sbjct: 343  PLNSLNWEKLTASCNLRLLEKGEVYVRRKGNLVPVHEMEEFQFGDRIFRPLNDG 396


>gb|KJB25756.1| hypothetical protein B456_004G207300 [Gossypium raimondii]
          Length = 1478

 Score =  321 bits (822), Expect = 1e-84
 Identities = 173/423 (40%), Positives = 243/423 (57%), Gaps = 21/423 (4%)
 Frame = -3

Query: 1206 MDGGTIIEQVVPLAVLTHIKFSVLTEGDIEKLSVLSINIAADVTNAKLGLPNEASECFTC 1027
            M+  +  EQ    A LT IKF V  + D E +S+L I   ++V++ +LG PN ++ C TC
Sbjct: 1    MESDSSEEQENSTAFLTGIKFHVSNDADNENMSILEITAPSEVSDPRLGFPNFSNHCTTC 60

Query: 1026 GARDTKKCDGHFGFIKLPMDICHPYYVSELVKILNSICPACKCNKSEXXXXXXXXXXXXX 847
             ARD K+C+GHFG IK P  I HP+++SE+V ILN ICP CK  + +             
Sbjct: 61   DARDMKQCEGHFGVIKFPYTILHPFFLSEVVHILNKICPGCKSIRKDLWMKGANSIARLL 120

Query: 846  XTPNHQPKSCNYCRGNSENWWPKITFKATSKVGKMALTVSADVNEKLPKKFHNKKLSDVF 667
                 + K C YC GNS  W+P + FK TSK       +  +V+E    K   K+     
Sbjct: 121  -----ETKGCKYCVGNSIEWYPPMRFKITSKELFRKSAIMVEVSENSLMKVR-KRGRQAL 174

Query: 666  PPDYWSIIERDPSQEDMYLNSNSRCLTAYQVYYLLKDIDPTSIEKFVRGRESLFLTCVPV 487
            P DYW  I +D  QE+ ++    R L+  QV +LLKD++P  I+KF+   +S+FL   PV
Sbjct: 175  PADYWDFIPKDQQQEEGFVKPGRRVLSHAQVRHLLKDVNPEFIKKFISEADSIFLNFFPV 234

Query: 486  TSNATRVRE------TTSKLMFDERTRAYKRLVDFKGEVNELGVRVRECLSASKIHSDNS 325
            T N+ RV E         +L+FDERTR YK+LVDF+G  NEL   V ECL  SK+H +  
Sbjct: 235  TPNSHRVTEIMHTSSNAQRLIFDERTRVYKKLVDFRGLANELSSHVLECLKISKLHVEKP 294

Query: 324  SNVDIK---------------SGSKWLKDVILSKRSDHSFRMVVVGDPNIKLGDIGMPQN 190
            S  D                 SG +++KDVIL KR+DH FRMV+ G+PN+KL +IG+P +
Sbjct: 295  STEDSALIAALKKNKDSASNMSGLRYMKDVILGKRNDHCFRMVLTGNPNLKLSEIGIPCH 354

Query: 189  ICQALVISETLNDHNKERLYDYCNWSLLEMGGFRVRRKDNLVIFRNPNDLEIGDTVYRHL 10
            + + L I+E LN  N+ERL   CN  +LE G  R+RR+  LV  R+   +++GDT+YR L
Sbjct: 355  VAEKLQIAEQLNRWNEERLKTCCNLRILEKGEIRIRREGKLVRIRHNEKVQVGDTIYRPL 414

Query: 9    DEG 1
            ++G
Sbjct: 415  NDG 417


>ref|XP_011463806.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
            [Fragaria vesca subsp. vesca]
            gi|764580245|ref|XP_011463807.1| PREDICTED: DNA-directed
            RNA polymerase IV subunit 1 isoform X1 [Fragaria vesca
            subsp. vesca]
          Length = 1444

 Score =  320 bits (820), Expect = 2e-84
 Identities = 179/413 (43%), Positives = 233/413 (56%), Gaps = 21/413 (5%)
 Frame = -3

Query: 1176 VPLAVLTHIKFSVLTEGDIEKLSVLSINIAADVTNAKLGLPNEASECFTCGARDTKKCDG 997
            +P A +T +  +V T  D EK+S L I  AA V + KLGLPN  S+C TCGA+DTK CDG
Sbjct: 11   LPRACITGVHLNVSTREDTEKISTLLIETAAQVNDPKLGLPNPTSQCSTCGAQDTKLCDG 70

Query: 996  HFGFIKLPMDICHPYYVSELVKILNSICPACKCNKSEXXXXXXXXXXXXXXTPNHQPKSC 817
            HFG IK P  I HPYY+SE+  ILN ICPACK  K                    + K C
Sbjct: 71   HFGSIKFPCSILHPYYLSEVSLILNKICPACKAIKQ------------GVRVKGSERKGC 118

Query: 816  NYCRGNSENWWPKITFKATSKVGKMALTVSADVNEKLPKKFHNKKLSDVFPPDYWSIIER 637
             YC G S + +P++ FK +S+      T+  +   +L             PPDYW  I +
Sbjct: 119  RYCFGGSSD-YPRMRFKVSSRELFRRSTIIVEAAGEL-------------PPDYWDFIPK 164

Query: 636  DPSQEDMYLNSNSRCLTAYQVYYLLKDIDPTSIEKFVRGRESLFLTCVPVTSNATRVRET 457
            DP  ++   N + + L+  QV++LL D+D   I KFV    SL L C  VT N  RV E 
Sbjct: 165  DPQHDETNTNPHRKVLSHAQVHFLLSDVDSNFITKFVPTTSSLSLDCFLVTPNCHRVTEV 224

Query: 456  T------SKLMFDERTRAYKRLVDFKGEVNELGVRVRECLSASKIHSDNSSNVDIK---- 307
                     LMFD+RTRAY++LVDF+G  NELG RV +CL  SKI+ + +    I     
Sbjct: 225  MYSFNNGQSLMFDDRTRAYRKLVDFRGTANELGSRVLDCLKISKINKEKTGRDSISVEQQ 284

Query: 306  ---------SGSKWLKDVILSKRSDHSFRMVVVGDPNIKLGDIGMPQNICQALVISETLN 154
                     SG +W+KDV+L KRSDH FRMVVVGDPNIKL +IG+P++I + + ISE LN
Sbjct: 285  KIKDSPSRTSGLRWIKDVVLGKRSDHCFRMVVVGDPNIKLSEIGIPRHIAEKMQISENLN 344

Query: 153  DHNKERLYDYCNWSLLE--MGGFRVRRKDNLVIFRNPNDLEIGDTVYRHLDEG 1
             +N E+L+ +C   L     G   VRR D+LV  R P +LE+GD +YR L  G
Sbjct: 345  QYNFEKLFVFCQLRLGPDGRGDIHVRRNDSLVRIRKPEELEMGDIIYRALSNG 397