BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Aconitum23_contig00010057
         (4245 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010246063.1| PREDICTED: DNA-directed RNA polymerase V sub...  1650   0.0  
ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase V sub...  1639   0.0  
ref|XP_012068654.1| PREDICTED: DNA-directed RNA polymerase V sub...  1631   0.0  
ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Popu...  1586   0.0  
gb|KJB67889.1| hypothetical protein B456_010G216600 [Gossypium r...  1586   0.0  
ref|XP_012449583.1| PREDICTED: DNA-directed RNA polymerase V sub...  1586   0.0  
ref|XP_012449584.1| PREDICTED: DNA-directed RNA polymerase V sub...  1583   0.0  
ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V sub...  1583   0.0  
gb|KJB67888.1| hypothetical protein B456_010G216600 [Gossypium r...  1582   0.0  
ref|XP_010032299.1| PREDICTED: DNA-directed RNA polymerase V sub...  1581   0.0  
ref|XP_007011001.1| DNA-directed RNA polymerase E subunit 1, put...  1579   0.0  
ref|XP_007010999.1| DNA-directed RNA polymerase E subunit 1, put...  1579   0.0  
gb|KJB67890.1| hypothetical protein B456_010G216600 [Gossypium r...  1576   0.0  
gb|KHG00588.1| DNA-directed RNA polymerase E subunit 1 -like pro...  1576   0.0  
ref|XP_011020393.1| PREDICTED: DNA-directed RNA polymerase V sub...  1573   0.0  
ref|XP_011655250.1| PREDICTED: DNA-directed RNA polymerase V sub...  1559   0.0  
ref|XP_008465860.1| PREDICTED: DNA-directed RNA polymerase V sub...  1558   0.0  
ref|XP_012574253.1| PREDICTED: DNA-directed RNA polymerase V sub...  1549   0.0  
ref|XP_012574252.1| PREDICTED: DNA-directed RNA polymerase V sub...  1549   0.0  
ref|XP_004511031.1| PREDICTED: DNA-directed RNA polymerase V sub...  1549   0.0  

>ref|XP_010246063.1| PREDICTED: DNA-directed RNA polymerase V subunit 1 [Nelumbo nucifera]
            gi|720093477|ref|XP_010246064.1| PREDICTED: DNA-directed
            RNA polymerase V subunit 1 [Nelumbo nucifera]
            gi|720093480|ref|XP_010246066.1| PREDICTED: DNA-directed
            RNA polymerase V subunit 1 [Nelumbo nucifera]
          Length = 1908

 Score = 1650 bits (4272), Expect = 0.0
 Identities = 858/1371 (62%), Positives = 1013/1371 (73%), Gaps = 17/1371 (1%)
 Frame = -2

Query: 4214 VDARITDIRFSVATDDXXXXXXXXXXXINHPSQLTNPFLGLPLESGKCESCGTQEPGKCE 4035
            +D  IT IRF++AT             I+HPSQLTNPFLGLPLE G CESCGT EPGKCE
Sbjct: 11   LDGEITGIRFNLATSQEICTSSVNDCPISHPSQLTNPFLGLPLEYGNCESCGTSEPGKCE 70

Query: 4034 GHFGYIQLPIPIYHPCHVTEXXXXXXXXXXXXXXXXXXXNV---GSDKSSKSPCLYCLDI 3864
            GHFGYIQLP+PIYHPCHV+E                        G+++SS +PC YC D+
Sbjct: 71   GHFGYIQLPVPIYHPCHVSELKHILDLICLKCLRMKMRKVKETSGTERSSSAPCSYCPDL 130

Query: 3863 PIILINEAKTSDGVVLLELKLAGRSQLYDGFWNFLDKYGYRYGDGKRRILLPCEVHEILK 3684
            P + I E KT+DG   LELK++ RS+  DGFWNFL++YG+RYGDG +R LLP E  EILK
Sbjct: 131  PQLSIKEVKTTDGACYLELKISSRSRSQDGFWNFLERYGFRYGDGSQRTLLPSESLEILK 190

Query: 3683 RFSVETRKKLSSKGYFPQDGYILQKVPVPPNCLSIPXXXXXXXXXXXXXXXXMLRKVLKQ 3504
            R   ETR+KL  KG+FPQ GYILQ +PVPPNCLS+P                MLRKVLKQ
Sbjct: 191  RIPEETRRKLIGKGHFPQYGYILQYLPVPPNCLSVPDISDGISIMSSDLSITMLRKVLKQ 250

Query: 3503 AEIIKCSRSGRPNFESHKVEVNDLQSVVAQYFRARGTAKDTRAVKMRPGTTKEAEDSATK 3324
             EII+ SRSG PNFES ++E N+LQS VA Y   RGTAK +R V  R   +K   D+ TK
Sbjct: 251  IEIIRSSRSGAPNFESQEIEANELQSTVANYLHVRGTAKASRDVDTRFSVSKGVNDTCTK 310

Query: 3323 AWLEKMRTFFISKGSGYCSRGVITGDAYKKVNEIGLPLEVAQRITFEEKVTECNKDHLQE 3144
            AWLEKMRT FISKGSG+ SR VITGDAYK +NEIGLP EVAQRITFEEKV+  N DHLQ+
Sbjct: 311  AWLEKMRTLFISKGSGFSSRSVITGDAYKGINEIGLPSEVAQRITFEEKVSIHNMDHLQK 370

Query: 3143 LVDKKLCLTYKDGASMYSLREGSKGHTLLKVGQVVHRRIMDGDILFINRPPSTHKHSLQA 2964
            LVD KLCLTY DG S YSLR+GSKG+T L+VGQVV RRIMDGDI+FINRPPSTHKHSLQA
Sbjct: 371  LVDNKLCLTYTDGLSTYSLRDGSKGYTSLRVGQVVRRRIMDGDIVFINRPPSTHKHSLQA 430

Query: 2963 LSVYVHEDNTVKINPLICGPLDADFDGDCVHLFYPQSLAARAEVVELFSVEQQLLSSHSG 2784
             SVYVH+D+TVK+NPLICGPL ADFDGDCVHLFYPQSL A++EV+ELF+V+ QLLSSHSG
Sbjct: 431  FSVYVHDDHTVKVNPLICGPLGADFDGDCVHLFYPQSLEAKSEVLELFAVQHQLLSSHSG 490

Query: 2783 CLNLQLKNDSLLSLKIMFKRFFLNKVTAQQLAMFITTNLPQPALLKANCVASQWTVLQIL 2604
             LNLQL NDSLLSL I+FKRFF +K ++QQL MF+   LPQPALLKA+     WT LQIL
Sbjct: 491  NLNLQLANDSLLSLNILFKRFFFDKASSQQLGMFVPMGLPQPALLKAHHDDPVWTALQIL 550

Query: 2603 QMALPSQFDCLGERFFISDGEILKVDFNKDILQSMFNDIISSVLFQMDSKEALNVFNSLQ 2424
            Q ALPS FD    R+ IS  EILK DFNKD LQ+ FN+II+SVLFQ  SKEALNV NSLQ
Sbjct: 551  QTALPSCFDSSERRYLISQSEILKFDFNKDALQTSFNEIINSVLFQKGSKEALNVVNSLQ 610

Query: 2423 PLLMENLFLDGYSVCLKDFYISKSVLGNLPRSIQEVSPLLRQLRSTYNELVELQVGNHLR 2244
            PLLME++F  G+SV LKDF I ++V   L + ++ + PLL  LRS YNE+VELQV NHLR
Sbjct: 611  PLLMEHIFSVGFSVSLKDFSIPRAVTEELHKMVEVILPLLHHLRSEYNEMVELQVENHLR 670

Query: 2243 NVKAPIVNFILKSSGLGNLIDSKSESSINKVVEQMGFLGLQLADRGKFYSRNLVEDMTSL 2064
             VK P+V FILKSS LGNLIDSKS+SSINKVV+Q+GFLGLQ +DRGK YSR LVE +TS 
Sbjct: 671  IVKVPVVKFILKSSILGNLIDSKSDSSINKVVQQVGFLGLQFSDRGKLYSRTLVEALTSF 730

Query: 2063 FLHKYAVNGVECPSEAFGLIKSCFFHGLNPYEDLVHSISSREVLVRSSRGLTEPGTLFKN 1884
            F  KY VN      E+FGLI SCFF+GLNPYE+LVHSISSREVLVRSSRGLTEPGTLFKN
Sbjct: 731  FRSKYCVNRDGESPESFGLISSCFFNGLNPYEELVHSISSREVLVRSSRGLTEPGTLFKN 790

Query: 1883 LMTILRDVVICYDGTVRNVCSNSIIQFQYAVEAGMNPHRFYPSGEPVGALAATAISNPAY 1704
            LM ILRDVVICYDGTVRNVC+NS+IQF+Y  + G  P  FYP+GEPVG LAATAISNPAY
Sbjct: 791  LMAILRDVVICYDGTVRNVCNNSLIQFEYGADLGNTPPSFYPAGEPVGILAATAISNPAY 850

Query: 1703 KAVLDXXXXSNASWDLMKEILVCKINFMNDTNDRRVILYLNDCCCVKKHCKENAAFLVQN 1524
            KAVLD    +N+SW+LMKEIL+C+ +F ND  DRRVILYLNDC C   +CKE AA++VQN
Sbjct: 851  KAVLDSSPSNNSSWELMKEILLCRASFKNDLIDRRVILYLNDCGCGGYYCKEKAAYIVQN 910

Query: 1523 QLKKVSLKDISVDFLIEYQNSQTSQESSGINTRLVGHIHLDKKRLKDLDRSMHEVLLKCQ 1344
             LK+VSL DI+VDF I+YQ       +S  N  LVGHIHLDK  LK L+RSM ++L  CQ
Sbjct: 911  HLKRVSLMDIAVDFSIKYQKQCIFPGNSVTNAGLVGHIHLDKMSLKALNRSMADILKDCQ 970

Query: 1343 ETISFFRRKKKNKLVDYLKNIFLSVSECCYFEQSYDSEWCQIPCLQFSWRLDPGGPSIET 1164
            ET++ F RKKK++L   L+ + L VSECC      D E  + PCLQF W  D    SI+ 
Sbjct: 971  ETLNSF-RKKKDQLGHILRRVLLLVSECCSVRLP-DKERSEFPCLQFLWE-DTSSDSIQR 1027

Query: 1163 ISQIMTNMICPILLDTIIKGDRRVYAANIIWISPDTNTWVKNHSSTPHGELALEIILEKK 984
            IS+IM N +CPILL T IKGD +V +ANI+W SPD  +WV+N     +GEL LE++++K 
Sbjct: 1028 ISKIMANKVCPILLGTNIKGDPQVLSANIMWTSPDVCSWVRNPCKIQNGELVLEVVVDKA 1087

Query: 983  FVKQHGDAWRLALDSCLPMIDLIDTRRSIPYAIRQVQEILGISCAFDQAVQRLSTSIRMV 804
             VK+ GDAWR+ L+SCLP+I L+DTRRSIPY I+Q+QE+LGISCAFDQAVQRLS+S+RMV
Sbjct: 1088 AVKRTGDAWRVVLNSCLPVIHLVDTRRSIPYGIKQIQELLGISCAFDQAVQRLSSSVRMV 1147

Query: 803  NKGVLKEHLVLAVNSMTCTGSLIGFNKGGYKALFRSLNVQIPFTEATLFTPRKCFERAAE 624
             KGVLKEHL+LA NSMTCTG++IGFN GGYKAL RSLNV +PFTEATLFTPRKCFE+AA+
Sbjct: 1148 TKGVLKEHLILAANSMTCTGNMIGFNSGGYKALLRSLNVHVPFTEATLFTPRKCFEKAAQ 1207

Query: 623  KCHTDTLSGIVASCSWGKQVAVGSGTHFEILWNKNEVQSDQNGVVDIYNFLQLVRSSG-G 447
            KCH D+LS IVASCSWGK V VG+G  FEILWN  E+  +Q+G +D+Y+FLQLVR S  G
Sbjct: 1208 KCHMDSLSSIVASCSWGKHVTVGTGAQFEILWNNKEMGVNQDGEIDVYDFLQLVRGSNEG 1267

Query: 446  ESNTSCLGEDYDEFESGVAE---PFSPEQD--FGKPTFDDADLQCDVEHHHTGVDWGAVA 282
            +S T+CLG++ D+ E    E     SP  +  F KP FDD    C  E       WG   
Sbjct: 1268 DSFTTCLGQEIDDLELENEERELSLSPNVNTCFNKPVFDDNG--CLGED-----SWG--- 1317

Query: 281  AKPSEGDPADGW--NTKGPQEMSSKKSVDSWGKQIEESDAK------GWGA 153
             K +E +  +GW  N K P E   +  + SW   +E+  A       GWG+
Sbjct: 1318 -KQAEKEGINGWDKNEKQP-EGGQQWELHSWDTNMEQKQASQPKGSLGWGS 1366


>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase V subunit 1 [Vitis vinifera]
            gi|731435545|ref|XP_010645605.1| PREDICTED: DNA-directed
            RNA polymerase V subunit 1 [Vitis vinifera]
          Length = 1830

 Score = 1639 bits (4245), Expect = 0.0
 Identities = 843/1427 (59%), Positives = 1037/1427 (72%), Gaps = 23/1427 (1%)
 Frame = -2

Query: 4238 MEENVPPLVDARITDIRFSVATDDXXXXXXXXXXXINHPSQLTNPFLGLPLESGKCESCG 4059
            MEE+   ++D  I+ IRF +AT             I+H SQLTNPFLGLPLE GKCESCG
Sbjct: 1    MEEDSSTILDGEISGIRFGLATRQEICIASVSDCPISHASQLTNPFLGLPLEFGKCESCG 60

Query: 4058 TQEPGKCEGHFGYIQLPIPIYHPCHVTEXXXXXXXXXXXXXXXXXXXNV--GSDKSSKSP 3885
            T EPG+CEGHFGYI+LPIPIYHP HV+E                       G  +   +P
Sbjct: 61   TAEPGQCEGHFGYIELPIPIYHPGHVSELKRMLSLLCLKCLKIRKSKVTNNGITEQLLAP 120

Query: 3884 CLYCLDIPIILINEAKTSDGVVLLELKLAGRSQLYDGFWNFLDKYGYRYGDGKRRILLPC 3705
            C  C D P + + E + ++G   LELK+  RS+  DGFW+FL +YGYRYG    RILLP 
Sbjct: 121  C--CQDSPQVSVREFRPTEGACFLELKIPSRSRPKDGFWDFLARYGYRYGHNLSRILLPS 178

Query: 3704 EVHEILKRFSVETRKKLSSKGYFPQDGYILQKVPVPPNCLSIPXXXXXXXXXXXXXXXXM 3525
            EV EIL+R   +TRKKL  KGYFPQDGYILQ +PVPPNCLS+P                M
Sbjct: 179  EVMEILRRIPEDTRKKLVRKGYFPQDGYILQYLPVPPNCLSVPDISDGVSIMSSDLSVSM 238

Query: 3524 LRKVLKQAEIIKCSRSGRPNFESHKVEVNDLQSVVAQYFRARGTAKDTRAVKMRPGTTKE 3345
            L+KVLKQ E+IK SRSG PNFESHK+E N+LQS + QY   RGTAK +R++  R G++KE
Sbjct: 239  LKKVLKQIEVIKGSRSGEPNFESHKIEANNLQSSIEQYLEVRGTAKTSRSLDTRFGSSKE 298

Query: 3344 AEDSATKAWLEKMRTFFISKGSGYCSRGVITGDAYKKVNEIGLPLEVAQRITFEEKVTEC 3165
              +S+TKAWLEKMRT FI KGSG+ SR VITGDAYK+VNEIGLP E+AQRITFEE+V   
Sbjct: 299  PNESSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGLPFEIAQRITFEERVNVH 358

Query: 3164 NKDHLQELVDKKLCLTYKDGASMYSLREGSKGHTLLKVGQVVHRRIMDGDILFINRPPST 2985
            N  HLQ LVD+KLCLTY+DG S YSLREGSKGHT L+ GQVVHRRIMDGDI+FINRPP+T
Sbjct: 359  NMKHLQNLVDEKLCLTYRDGLSTYSLREGSKGHTFLRPGQVVHRRIMDGDIVFINRPPTT 418

Query: 2984 HKHSLQALSVYVHEDNTVKINPLICGPLDADFDGDCVHLFYPQSLAARAEVVELFSVEQQ 2805
            HKHSLQALSVYVH+D+TVKINPLICGPL ADFDGDCVHLFYPQSL A+AEV+ELFSVE+Q
Sbjct: 419  HKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCVHLFYPQSLGAKAEVLELFSVEKQ 478

Query: 2804 LLSSHSGCLNLQLKNDSLLSLKIMFKRFFLNKVTAQQLAMFITTNLPQPALLKANCVASQ 2625
            LLSSHSG LNLQL  DSLLSLK++F+R+FLNK  AQQL MF++ +LP+PALLK+ C    
Sbjct: 479  LLSSHSGNLNLQLATDSLLSLKVLFERYFLNKAAAQQLVMFVSMSLPRPALLKSPCSGPC 538

Query: 2624 WTVLQILQMALPSQFDCLGERFFISDGEILKVDFNKDILQSMFNDIISSVLFQMDSKEAL 2445
            WT LQILQ ALPS FDC+GER +IS   ILKVD+N+D+LQS+ N+I++S+  +    E L
Sbjct: 539  WTALQILQTALPSYFDCIGERHWISKSAILKVDYNRDVLQSLVNEIVTSIFSEKGPNEVL 598

Query: 2444 NVFNSLQPLLMENLFLDGYSVCLKDFYISKSVLGNLPRSIQEVSPLLRQLRSTYNELVEL 2265
              F+SLQPLLMENLF +G+SV L+DF I   V  N+ ++++++S LL  LRS YNEL++L
Sbjct: 599  KFFDSLQPLLMENLFSEGFSVSLEDFSIPSEVTQNIQKNVEDISSLLYNLRSMYNELLQL 658

Query: 2264 QVGNHLRNVKAPIVNFILKSSGLGNLIDSKSESSINKVVEQMGFLGLQLADRGKFYSRNL 2085
            Q  NHLR  K P+ NFIL SS LGNLIDSKS+S+INKVV+Q+GFLG QL+++GKFYSR L
Sbjct: 659  QAENHLRLTKVPVANFILNSSALGNLIDSKSDSAINKVVQQIGFLGQQLSEKGKFYSRTL 718

Query: 2084 VEDMTSLFLHKYAVNGVECPSEAFGLIKSCFFHGLNPYEDLVHSISSREVLVRSSRGLTE 1905
            VE M  LF  KY  +G + PS  FGLI+SCFFHGL+PYE++VHSIS+RE++VRSSRGL+E
Sbjct: 719  VEGMAYLFKSKYPFHGADYPSGEFGLIRSCFFHGLDPYEEMVHSISTREIIVRSSRGLSE 778

Query: 1904 PGTLFKNLMTILRDVVICYDGTVRNVCSNSIIQFQYAVEAGMNPHRFYPSGEPVGALAAT 1725
            PGTLFKNLM ILRDVVICYDGTVRNVCSNSIIQF+Y V+A   P  F+P+GEPVG LAAT
Sbjct: 779  PGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYGVKARTKPQHFFPAGEPVGVLAAT 838

Query: 1724 AISNPAYKAVLDXXXXSNASWDLMKEILVCKINFMNDTNDRRVILYLNDCCCVKKHCKEN 1545
            A+SNPAYKAVLD    SN+SW+LMKEIL+C++NF ND  DRRVILYLNDC C +K+C+EN
Sbjct: 839  AMSNPAYKAVLDSSPSSNSSWELMKEILLCQVNFKNDLIDRRVILYLNDCDCGRKYCREN 898

Query: 1544 AAFLVQNQLKKVSLKDISVDFLIEYQNSQTSQESSGINTRLVGHIHLDKKRLKDLDRSMH 1365
            AA+LV+NQLKK SLKD +V+F+IEY        SS   T LVGHIHL+K  L+DL+ SM 
Sbjct: 899  AAYLVKNQLKKASLKDTAVEFMIEYVKQHAVSGSSEPGTGLVGHIHLNKLLLQDLNVSMQ 958

Query: 1364 EVLLKCQETISFFRRKKKNKLVDYLKNIFLSVSECCYFEQSYDSEWCQIPCLQFSWRLDP 1185
            EV  KC+ETI+ FR+KK   +  + K I LS  ECC F+ S  S+   +PCL F W+   
Sbjct: 959  EVCQKCEETINSFRKKK--NVGPFFKKIILSFRECCTFQHSCQSKGSDMPCLLFFWQ-GN 1015

Query: 1184 GGPSIETISQIMTNMICPILLDTIIKGDRRVYAANIIWISPDTNTWVKNHSSTPHGELAL 1005
               ++E I  I+ + ICP+LL TIIKGD RV   NIIWISPDT TW++N   +  GELAL
Sbjct: 1016 RDDNLEQILHILAHKICPVLLQTIIKGDSRVCTVNIIWISPDTTTWIRNPCKSRKGELAL 1075

Query: 1004 EIILEKKFVKQHGDAWRLALDSCLPMIDLIDTRRSIPYAIRQVQEILGISCAFDQAVQRL 825
            +I+LEK  VKQ GDAWR+ LD+CLP++ LIDTRRSIPYAI+QVQE+LGISCAFDQAVQRL
Sbjct: 1076 DIVLEKAAVKQRGDAWRIVLDACLPVLHLIDTRRSIPYAIKQVQELLGISCAFDQAVQRL 1135

Query: 824  STSIRMVNKGVLKEHLVLAVNSMTCTGSLIGFNKGGYKALFRSLNVQIPFTEATLFTPRK 645
            S S+ MV KGVLKEHL+L  NSMTC G+LIGFN GGYKAL R+LN+Q+PFTEATLFTPRK
Sbjct: 1136 SKSVTMVAKGVLKEHLILLANSMTCAGNLIGFNSGGYKALSRALNLQVPFTEATLFTPRK 1195

Query: 644  CFERAAEKCHTDTLSGIVASCSWGKQVAVGSGTHFEILWNKNEVQSDQNGVVDIYNFLQL 465
            CFE+A+EKCHTD+LS IVASCSWGK V VG+G+ F++LW+  E+   Q+G +DIY+FL L
Sbjct: 1196 CFEKASEKCHTDSLSSIVASCSWGKHVTVGTGSRFDVLWDTKEIGPAQDGGIDIYSFLHL 1255

Query: 464  VRSS--GGESNTSCLGEDYDEF---ESGVAEPFSPE--QDFGKPTFDD-ADLQCDVEHH- 312
            VRS   G E +T+CLG + ++    +  +    SPE   +F KP F+D A+ Q   E+H 
Sbjct: 1256 VRSGSYGKEPDTACLGAEVEDLILEDENLELGMSPEHSSNFEKPVFEDSAEFQNTWENHV 1315

Query: 311  -HTGVDWGAVAAKPSEGD--PADGWNTKGPQEMSSKKSVDSWGKQIEESDAKGWGASADR 141
              +G DW     K +         W++ G  +++ K +  S  +  E S + GW    D+
Sbjct: 1316 PGSGGDWAVNQNKETTASTLKPSAWSSWGTDKVTMKDTF-STREPDESSRSAGWD---DK 1371

Query: 140  ETLGGTPAERGSVGGWNTTASQKLPSEE---------PADAWGKSTD 27
             T G   A+  +    +  + +    +E          + AWGK  D
Sbjct: 1372 GTWGTDKAQNTAFRRTHEDSPRSSGRDETFRDGRPQFASSAWGKKID 1418


>ref|XP_012068654.1| PREDICTED: DNA-directed RNA polymerase V subunit 1 [Jatropha curcas]
          Length = 1980

 Score = 1631 bits (4224), Expect = 0.0
 Identities = 835/1425 (58%), Positives = 1033/1425 (72%), Gaps = 31/1425 (2%)
 Frame = -2

Query: 4238 MEENVP-PLVDARITDIRFSVATDDXXXXXXXXXXXINHPSQLTNPFLGLPLESGKCESC 4062
            MEENV   ++D  +  IRF +AT             INH SQLTNP+LGLPLE GKC+SC
Sbjct: 9    MEENVQFTILDGEVVGIRFGLATPKEISTASVSGCSINHSSQLTNPYLGLPLEFGKCQSC 68

Query: 4061 GTQEPGKCEGHFGYIQLPIPIYHPCHVTEXXXXXXXXXXXXXXXXXXXNVGSDKSSKSPC 3882
            GT E GKCEGHFGYI+LPIPIYHP H++E                               
Sbjct: 69   GTSEAGKCEGHFGYIELPIPIYHPSHISELKRLLSLLCLKCLKLKTNKFQAKSNGVAERL 128

Query: 3881 LYCL-DIPIILINEAKTSDGVVLLELKLAGRSQLYDGFWNFLDKYGYRY-GDGKRRILLP 3708
              C  +   I + E KT+DG + L+LKL  R +L DGFW+FLD+YG+ Y GD   R LLP
Sbjct: 129  FSCCEEASQISVKEIKTTDGALFLQLKLPSRMRLNDGFWSFLDRYGFHYGGDDTIRSLLP 188

Query: 3707 CEVHEILKRFSVETRKKLSSKGYFPQDGYILQKVPVPPNCLSIPXXXXXXXXXXXXXXXX 3528
            CEV E+LKR   +TRKKL+ KGYFPQ+GYI++ +PVPPNCLS+P                
Sbjct: 189  CEVMEMLKRIPQDTRKKLARKGYFPQEGYIMRYLPVPPNCLSVPDISDGVSIMSSDLSIS 248

Query: 3527 MLRKVLKQAEIIKCSRSGRPNFESHKVEVNDLQSVVAQYFRARGTAKDTRAVKMRPGTTK 3348
            ML+KVLKQ EIIK SRSG PNFESH+VE  DLQS V QY + RGTAK +R V+ R G  K
Sbjct: 249  MLKKVLKQVEIIKSSRSGSPNFESHEVEAIDLQSAVDQYLQVRGTAKGSRDVESRFGIHK 308

Query: 3347 EAEDSATKAWLEKMRTFFISKGSGYCSRGVITGDAYKKVNEIGLPLEVAQRITFEEKVTE 3168
            E+ DS+TKAWLEKMRT FI KGSG+ SR VITGDAYK+VNEIG+P E+AQRITFEE+V+ 
Sbjct: 309  ESNDSSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGIPFEIAQRITFEERVSV 368

Query: 3167 CNKDHLQELVDKKLCLTYKDGASMYSLREGSKGHTLLKVGQVVHRRIMDGDILFINRPPS 2988
             N  +LQELVD KLC+TY+DG+S YSLR+GSKGHT L+ GQVVHRRIMDGD +FINRPP+
Sbjct: 369  HNVKYLQELVDNKLCMTYRDGSSTYSLRDGSKGHTFLRPGQVVHRRIMDGDTVFINRPPT 428

Query: 2987 THKHSLQALSVYVHEDNTVKINPLICGPLDADFDGDCVHLFYPQSLAARAEVVELFSVEQ 2808
            THKHSLQALSVYVH+D+TVKINPLICGPL ADFDGDCVHLFYPQSLAA+AEV+ELFSVE+
Sbjct: 429  THKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCVHLFYPQSLAAKAEVLELFSVEK 488

Query: 2807 QLLSSHSGCLNLQLKNDSLLSLKIMFKRFFLNKVTAQQLAMFITTNLPQPALLKANCVAS 2628
            QLLSSHSG LNLQL  DSLLSLK MFK +FL++  AQQLAMF++ +LPQP L K      
Sbjct: 489  QLLSSHSGNLNLQLTTDSLLSLKSMFKAYFLDRAAAQQLAMFVSFSLPQPTLWKVPYSDP 548

Query: 2627 QWTVLQILQMALPSQFDCLGERFFISDGEILKVDFNKDILQSMFNDIISSVLFQMDSKEA 2448
             WTVLQILQ ALPSQFDC GER+FIS G+I+K+DF++D++QS+ N+I+ S+ F+      
Sbjct: 549  IWTVLQILQTALPSQFDCTGERYFISKGDIIKIDFSRDVVQSVINEIVISIFFEKGPDAV 608

Query: 2447 LNVFNSLQPLLMENLFLDGYSVCLKDFYISKSVLGNLPRSIQEVSPLLRQLRSTYNELVE 2268
               FNSLQPLLMENLF +G+SVCL+D YIS++V+ ++ +  + +SPLL QLRSTYNELVE
Sbjct: 609  FKFFNSLQPLLMENLFSEGFSVCLEDLYISRAVIESIHKDFKVISPLLSQLRSTYNELVE 668

Query: 2267 LQVGNHLRNVKAPIVNFILKSSGLGNLIDSKSESSINKVVEQMGFLGLQLADRGKFYSRN 2088
            LQ+ NH+R VK  +  FI++SS +G+LID KS+S++ KVV+Q+GFLGLQ++DRGKFYS+ 
Sbjct: 669  LQLENHIRQVKLRVAEFIVRSSSIGDLIDYKSDSAMTKVVQQIGFLGLQISDRGKFYSKT 728

Query: 2087 LVEDMTSLFLHKYAVNGVECPSEAFGLIKSCFFHGLNPYEDLVHSISSREVLVRSSRGLT 1908
            LVEDM S F  KY    VE PS  +GLI+SCFFHGL+PYE++VHSIS+REV+VRSSRGL+
Sbjct: 729  LVEDMVSHFERKYPSEVVEYPSAQYGLIQSCFFHGLDPYEEMVHSISTREVIVRSSRGLS 788

Query: 1907 EPGTLFKNLMTILRDVVICYDGTVRNVCSNSIIQFQYAVEAGMNPHRFYPSGEPVGALAA 1728
            EPGTLFKNLM ILRDVVICYDGTVRNVCSNSIIQF+Y V+AG+     +P+GEPVG LAA
Sbjct: 789  EPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYGVKAGIKAQSLFPAGEPVGVLAA 848

Query: 1727 TAISNPAYKAVLDXXXXSNASWDLMKEILVCKINFMNDTNDRRVILYLNDCCCVKKHCKE 1548
            TA+SNPAYKAVLD    SN+SW+LMKEIL+C++NF ND  DRR+ILYLNDC C + +C+E
Sbjct: 849  TAMSNPAYKAVLDSTPSSNSSWELMKEILLCRVNFKNDLTDRRIILYLNDCGCGRNYCQE 908

Query: 1547 NAAFLVQNQLKKVSLKDISVDFLIEYQNSQTSQESSGINTRLVGHIHLDKKRLKDLDRSM 1368
             AA+ V+N L+KV LKDI+  F+IEY+   T  +       L GHIHLDK +L++L  SM
Sbjct: 909  KAAYKVKNHLQKVILKDIANHFMIEYKRQHTIAD-----VGLAGHIHLDKMKLENLKVSM 963

Query: 1367 HEVLLKCQETISFFRRKKKNKLVDYLKNIFLSVSECCYFEQSYDSEWCQIPCLQFSWRLD 1188
              +  KC ET++FFR+KK  KL  + K I +S S+CC F++S   EW   PCL F W+  
Sbjct: 964  EVIHQKCTETVNFFRKKK--KLALFFKRIEVSASQCCSFQESCADEWSGSPCLTFFWQ-- 1019

Query: 1187 PGGPSIETISQIMTNMICPILLDTIIKGDRRVYAANIIWISPDTNTWVKNHSSTPHGELA 1008
                 IE IS +  +MICP+LL+T+IKGD R+  ANI WISPDT TW++N S T  GELA
Sbjct: 1020 DSDIRIERISNLFADMICPVLLETVIKGDHRISNANITWISPDTTTWIRNPSRTQKGELA 1079

Query: 1007 LEIILEKKFVKQHGDAWRLALDSCLPMIDLIDTRRSIPYAIRQVQEILGISCAFDQAVQR 828
            L++++EK  VKQ GDAWR+ LDSCLP++ LIDT RSIPYAI+Q+QE+LG+SCAFDQAVQR
Sbjct: 1080 LDVVIEKSAVKQSGDAWRIVLDSCLPVLHLIDTTRSIPYAIKQIQELLGVSCAFDQAVQR 1139

Query: 827  LSTSIRMVNKGVLKEHLVLAVNSMTCTGSLIGFNKGGYKALFRSLNVQIPFTEATLFTPR 648
            LSTS+ +V KGVLKEHL+L  NSMTC G+L+GFN GGYK+L RSL+VQ+PFT+ATLFTPR
Sbjct: 1140 LSTSVTIVAKGVLKEHLILLANSMTCAGNLVGFNSGGYKSLSRSLDVQVPFTDATLFTPR 1199

Query: 647  KCFERAAEKCHTDTLSGIVASCSWGKQVAVGSGTHFEILWNKNEVQSDQNGVVDIYNFLQ 468
            KCFERAAEKCH DTLS IVASCSWGK VAVG+G+ F++LW+K E   DQ G +D+Y FL 
Sbjct: 1200 KCFERAAEKCHVDTLSSIVASCSWGKNVAVGTGSRFDVLWDKKEACLDQEGSIDVYEFLN 1259

Query: 467  LVR-SSGGESNTSCLGEDYDE--FESGVAE-PFSPEQDFG--KPTFDD-ADLQCDVEHHH 309
            +VR S+ GE +T+CLG D D+   + G+ +   SPE +FG  KPTF+D A+ Q  +++  
Sbjct: 1260 MVRCSANGEESTACLGADVDDLMLDDGMDDWNLSPEHNFGSDKPTFEDRAEFQNCLDNQ- 1318

Query: 308  TGVDWGAVAAKPSEGDPADGWNTKGPQEMSSKKSVDSWG------------KQIEESD-- 171
               DW   +   +       W      E   + S   WG            K  EESD  
Sbjct: 1319 -PADWEKASYAVNGSSSGGNWGGDKNMETDKENSWSGWGRNAAETQNALSTKAHEESDKS 1377

Query: 170  -----AKGWGASADRETLGGTPAERGSVGGWNT--TASQKLPSEE 57
                 A GW A A+ +      AE  S  GW T  T S  +P+++
Sbjct: 1378 NSWDTAGGWQAQANGKAENNV-AETDSWSGWGTRKTESSDVPAKK 1421


>ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Populus trichocarpa]
            gi|550343552|gb|EEE78905.2| hypothetical protein
            POPTR_0003s19630g [Populus trichocarpa]
          Length = 1920

 Score = 1586 bits (4107), Expect = 0.0
 Identities = 821/1402 (58%), Positives = 1007/1402 (71%), Gaps = 19/1402 (1%)
 Frame = -2

Query: 4235 EENVPPLVDARITDIRFSVATDDXXXXXXXXXXXINHPSQLTNPFLGLPLESGKCESCGT 4056
            E +   + D  IT IRF +AT             I+H SQLTNPFLGLPLE GKCESCGT
Sbjct: 3    ENSQSSIFDGEITGIRFGLATQKEICTASISDCPISHSSQLTNPFLGLPLEFGKCESCGT 62

Query: 4055 QEPGKCEGHFGYIQLPIPIYHPCHVTEXXXXXXXXXXXXXXXXXXXNVGSDKSSKSPCLY 3876
             EPGKCEGHFG+I LPIPIYHP H++E                               L 
Sbjct: 63   SEPGKCEGHFGFIHLPIPIYHPSHISELKRMLSLICLKCLKLKRNKIQIKSNGVAERLLS 122

Query: 3875 CLDIPI-----ILINEAKTSDGVVLLELKLAGRSQLYDGFWNFLDKYGYRYGDGKRRILL 3711
            C ++ I     I I E K +DG   LELKL  RS+L DG WNFL++YG+RYGD   R LL
Sbjct: 123  CCEVSIKECAQISIREVKNTDGACFLELKLPSRSRLRDGCWNFLERYGFRYGDDFTRPLL 182

Query: 3710 PCEVHEILKRFSVETRKKLSSKGYFPQDGYILQKVPVPPNCLSIPXXXXXXXXXXXXXXX 3531
            PCEV +ILKR   ETRKKLS KGYFPQDGYILQ++PVPPNCLS+P               
Sbjct: 183  PCEVMQILKRIPAETRKKLSGKGYFPQDGYILQQLPVPPNCLSVPVVSDGITVMSSDLSI 242

Query: 3530 XMLRKVLKQAEIIKCSRSGRPNFESHKVEVNDLQSVVAQYFRARGTAKDTRAVKMRPGTT 3351
             ML+KVLKQAE+I+ SRSG PNF++HK E   LQS+V QY + RGT K +R V  R G  
Sbjct: 243  SMLKKVLKQAEVIRSSRSGAPNFDAHKDEATSLQSMVDQYLQVRGTTKTSRDVDTRYGVK 302

Query: 3350 KEAEDSATKAWLEKMRTFFISKGSGYCSRGVITGDAYKKVNEIGLPLEVAQRITFEEKVT 3171
            KE+ +S TKAWLEKMRT FI KGSG+ SR VITGDAY  VN++G+P E+AQRITFEE+V+
Sbjct: 303  KESSESTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYTLVNQVGIPYEIAQRITFEERVS 362

Query: 3170 ECNKDHLQELVDKKLCLTYKDGASMYSLREGSKGHTLLKVGQVVHRRIMDGDILFINRPP 2991
              N  +LQELVD KLCLTYKDG+S YSLREGSKGHT L+ GQVVHRRIMDGDI+FINRPP
Sbjct: 363  VHNMRYLQELVDNKLCLTYKDGSSTYSLREGSKGHTFLRPGQVVHRRIMDGDIVFINRPP 422

Query: 2990 STHKHSLQALSVYVHEDNTVKINPLICGPLDADFDGDCVHLFYPQSLAARAEVVELFSVE 2811
            +THKHSLQALSVYVH+D+ VKINPLICGPL ADFDGDCVHLFYPQSLAA+AEV+ELFSVE
Sbjct: 423  TTHKHSLQALSVYVHDDHAVKINPLICGPLSADFDGDCVHLFYPQSLAAKAEVLELFSVE 482

Query: 2810 QQLLSSHSGCLNLQLKNDSLLSLKIMFKRFFLNKVTAQQLAMFITTNLPQPALLKANCVA 2631
            +QLLSSHSG LNLQL  DSLLSLK+MFK  FL K  AQQLAMFI+  LPQPALLK NC  
Sbjct: 483  KQLLSSHSGNLNLQLTTDSLLSLKMMFKACFLGKSAAQQLAMFISPYLPQPALLKVNCFF 542

Query: 2630 SQWTVLQILQMALPSQFDCLGERFFISDGEILKVDFNKDILQSMFNDIISSVLFQMDSKE 2451
              WT  QILQMALP+ F+C GERF I +   LKVDFN+D++ S+ N+I+ S+ F+  S  
Sbjct: 543  PHWTAHQILQMALPACFNCSGERFLIINSNFLKVDFNRDVVASVINEILISMFFEKGSGA 602

Query: 2450 ALNVFNSLQPLLMENLFLDGYSVCLKDFYISKSVLGNLPRSIQEVSPLLRQLRSTYNELV 2271
             L  FNSLQP+LMENLF +G+SV L+DF IS++V   +P S + +SPLL  LRST+NELV
Sbjct: 603  VLKFFNSLQPMLMENLFSEGFSVSLEDFSISRAVKQRIPESFKAISPLLCNLRSTFNELV 662

Query: 2270 ELQVGNHLRNVKAPIVNFILKSSGLGNLIDSKSESSINKVVEQMGFLGLQLADRGKFYSR 2091
            ELQV NH+R+VK P+  FIL SS LG LIDSKS++++ KVV+Q+GFLGLQ++DRGK YS+
Sbjct: 663  ELQVENHIRDVKQPVREFILTSSALGYLIDSKSDAAVTKVVQQIGFLGLQVSDRGKLYSK 722

Query: 2090 NLVEDMTSLFLHKYAVNGVECPSEAFGLIKSCFFHGLNPYEDLVHSISSREVLVRSSRGL 1911
             LVED+ S FL KY  N  + PS  +GLI++ FFHGL+ YE++ HSIS+REV+VRSSRGL
Sbjct: 723  TLVEDLASHFLSKYPANLFDYPSAQYGLIQNSFFHGLDAYEEMAHSISTREVIVRSSRGL 782

Query: 1910 TEPGTLFKNLMTILRDVVICYDGTVRNVCSNSIIQFQYAVEAGMNPHRFYPSGEPVGALA 1731
            +EPGTLFKNLM ILRDVVICYDGTVRNV SNSIIQF+Y V+ G      +P+GEPVG LA
Sbjct: 783  SEPGTLFKNLMAILRDVVICYDGTVRNVSSNSIIQFEYGVKVGTESQSLFPAGEPVGVLA 842

Query: 1730 ATAISNPAYKAVLDXXXXSNASWDLMKEILVCKINFMNDTNDRRVILYLNDCCCVKKHCK 1551
            ATA+SNPAYKAVLD    SN SWD+MKEIL+CK+ F ND  DRRVILYLNDC C + +C+
Sbjct: 843  ATAMSNPAYKAVLDSTPSSNCSWDMMKEILLCKVGFKNDLADRRVILYLNDCGCGRNYCQ 902

Query: 1550 ENAAFLVQNQLKKVSLKDISVDFLIEYQNSQTSQESSGINTRLVGHIHLDKKRLKDLDRS 1371
            E AA+LV+N L+KVSLKDI+  F+IEY+ SQ   ES G +  LVGH+HLDK++L+DL+ +
Sbjct: 903  ERAAYLVKNHLEKVSLKDIAKCFMIEYK-SQQIPESFGSDAGLVGHVHLDKRKLQDLNIT 961

Query: 1370 MHEVLLKCQETISFFRRKKKNKLVDYLKNIFLSVSECCYFEQSYDSEWCQIPCLQFSWRL 1191
               +L KCQET++ FR+KK  K+ +  K   L VSE C F+Q  D    + PCL F W+ 
Sbjct: 962  AQVILEKCQETVNTFRKKK--KVGNLFKKTILLVSESCSFQQCID----ESPCLMFFWQ- 1014

Query: 1190 DPGGPSIETISQIMTNMICPILLDTIIKGDRRVYAANIIWISPDTNTWVKNHSSTPHGEL 1011
                  +E  S I+ +MICP+LL+TIIKGD R+  ANIIW +P+TNTW++N S T  GEL
Sbjct: 1015 GADDVHLERTSNILADMICPVLLETIIKGDHRISCANIIWATPETNTWIRNPSRTQKGEL 1074

Query: 1010 ALEIILEKKFVKQHGDAWRLALDSCLPMIDLIDTRRSIPYAIRQVQEILGISCAFDQAVQ 831
            AL+I+LEK  VK+ GDAWR+ LDSCLP++ LI+T RSIPYAI+QVQE+LG+SCAFD AVQ
Sbjct: 1075 ALDIVLEKSVVKKSGDAWRIVLDSCLPVLHLINTTRSIPYAIKQVQELLGVSCAFDTAVQ 1134

Query: 830  RLSTSIRMVNKGVLKEHLVLAVNSMTCTGSLIGFNKGGYKALFRSLNVQIPFTEATLFTP 651
            RLS S+ MV KGVLKEHL+L  NSMTC GSLIGF  GGYK L RSL++Q+PFTEATLFTP
Sbjct: 1135 RLSKSVTMVAKGVLKEHLILLGNSMTCAGSLIGFYTGGYKTLSRSLDIQVPFTEATLFTP 1194

Query: 650  RKCFERAAEKCHTDTLSGIVASCSWGKQVAVGSGTHFEILWNKNEVQSDQNGVVDIYNFL 471
            RKCFE+AAEKCHTD+LS IVASC+WGK V VG+G+HF++LW+  E   +  G +D+Y+FL
Sbjct: 1195 RKCFEKAAEKCHTDSLSSIVASCAWGKHVTVGTGSHFDVLWDTKEACLNPEGSMDVYSFL 1254

Query: 470  QLVRSSGG--ESNTSCLGEDYDEFESGVAE-PFSPEQDFG--KPTFDD-ADLQCDVEHHH 309
             +VRS+ G  ES T+CLG + D+      +   SPE +    KPTF+D A+ Q  + +  
Sbjct: 1255 NMVRSTAGGEESVTACLGAEVDDLMLEDEDWNLSPEHNSSSDKPTFEDSAEFQDFLGNQP 1314

Query: 308  TGVDWGAVAAKPSEGDPADGWNTKGPQEMSSKKSVDSWGKQIEESD---AKGWGASADRE 138
               +W  +++       +  W+     + + K+   S G    E++   + GW  +A R 
Sbjct: 1315 AESNWEKISSLKDRSRSSGNWDV-DKNDGAVKEKPWSLGMNTAEANDVASSGWDTAAART 1373

Query: 137  TLG-----GTPAERGSVGGWNT 87
            T          A+  S  GW T
Sbjct: 1374 TNNSWNSENNVAQSNSFSGWAT 1395


>gb|KJB67889.1| hypothetical protein B456_010G216600 [Gossypium raimondii]
          Length = 1883

 Score = 1586 bits (4106), Expect = 0.0
 Identities = 815/1397 (58%), Positives = 1012/1397 (72%), Gaps = 11/1397 (0%)
 Frame = -2

Query: 4238 MEENVPPLV-DARITDIRFSVATDDXXXXXXXXXXXINHPSQLTNPFLGLPLESGKCESC 4062
            MEEN   ++ D  I  I+F +AT             INH SQL+N +LGLPLE GKC +C
Sbjct: 1    MEENSSSVILDGEIVGIKFCLATPKEILTASVSGFPINHVSQLSNSYLGLPLEFGKCSAC 60

Query: 4061 GTQEPGKCEGHFGYIQLPIPIYHPCHVTEXXXXXXXXXXXXXXXXXXXNVGSDKSSK--- 3891
            GT EPG+CEGHFGYI+LPIPIYHP H++E                    + S   ++   
Sbjct: 61   GTSEPGQCEGHFGYIELPIPIYHPSHISELKRLLSLLCLKCLKLKNKFQMKSGSVAERLL 120

Query: 3890 SPCLYCLDIPIILINEAKTSDGVVLLELKLAGRSQLYDGFWNFLDKYGYRYGDGKRRILL 3711
            S C  C + P + I E KT+DG   LELK   R    +  WNFL++YG+RYGD   R LL
Sbjct: 121  SSC--CENTPQVSIKEVKTTDGACYLELKQPSRQSKTN--WNFLERYGFRYGDHHTRTLL 176

Query: 3710 PCEVHEILKRFSVETRKKLSSKGYFPQDGYILQKVPVPPNCLSIPXXXXXXXXXXXXXXX 3531
            PCEV EILKR   +TR+KLS KG+FPQ+GYILQ +PVPPNCLS+P               
Sbjct: 177  PCEVVEILKRIPSQTRRKLSGKGFFPQEGYILQYLPVPPNCLSVPDVSDGVSVMSSDLST 236

Query: 3530 XMLRKVLKQAEIIKCSRSGRPNFESHKVEVNDLQSVVAQYFRARGTAKDTRAVKMRPGTT 3351
             MLRKVLKQ EIIK SRSG PNFESH+VE NDLQS V QY + RGT K +R++  R G  
Sbjct: 237  SMLRKVLKQVEIIKSSRSGTPNFESHEVEANDLQSAVEQYLQVRGTVKASRSIDARYGVN 296

Query: 3350 KEAEDSATKAWLEKMRTFFISKGSGYCSRGVITGDAYKKVNEIGLPLEVAQRITFEEKVT 3171
            K+A DS+TKAWLEKMRT FI KGSG+ SR VITGD YKKVNEIG+P E+AQRITFEE+V 
Sbjct: 297  KDASDSSTKAWLEKMRTLFIRKGSGFSSRSVITGDPYKKVNEIGIPSEIAQRITFEERVN 356

Query: 3170 ECNKDHLQELVDKKLCLTYKDGASMYSLREGSKGHTLLKVGQVVHRRIMDGDILFINRPP 2991
              N  +LQ LVD KLCLTY+DG S YSLREGSKGHT L+ GQVVHRRIMDGDI+FINRPP
Sbjct: 357  MHNMRYLQNLVDNKLCLTYRDGGSTYSLREGSKGHTFLRPGQVVHRRIMDGDIVFINRPP 416

Query: 2990 STHKHSLQALSVYVHEDNTVKINPLICGPLDADFDGDCVHLFYPQSLAARAEVVELFSVE 2811
            +THKHSLQALSVYVH+D+TVKINPLICGPL ADFDGDC+HLFYPQSL+A+AEV ELFSVE
Sbjct: 417  TTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLSAKAEVYELFSVE 476

Query: 2810 QQLLSSHSGCLNLQLKNDSLLSLKIMFKRFFLNKVTAQQLAMFITTNLPQPALLKANCVA 2631
            +QLLSSHSG LNLQL  DSLLSL++M K F   K  AQQL+MF+++ LP+PA LK N VA
Sbjct: 477  KQLLSSHSGNLNLQLATDSLLSLRVMLKTFLFKKADAQQLSMFLSSALPEPAFLKCNHVA 536

Query: 2630 SQWTVLQILQMALPSQFDCLGERFFISDGEILKVDFNKDILQSMFNDIISSVLFQMDSKE 2451
              WT  QILQ A P+  DC  +R+ I   +ILKVDFNKD++QS+ N++++S+ ++   KE
Sbjct: 537  PCWTAFQILQTAFPACLDCSSDRYLIGKSDILKVDFNKDLMQSVINEVVASIFYEKGPKE 596

Query: 2450 ALNVFNSLQPLLMENLFLDGYSVCLKDFYISKSVLGNLPRSIQEVSPLLRQLRSTYNELV 2271
             LN F+SLQPLLMEN+F +G++VCL+DF +S+ V+ N+ + IQ +SPLL QLRSTYNELV
Sbjct: 597  VLNFFDSLQPLLMENIFAEGFTVCLEDFSVSREVIENIQKDIQVISPLLYQLRSTYNELV 656

Query: 2270 ELQVGNHLRNVKAPIVNFILKSSGLGNLIDSKSESSINKVVEQMGFLGLQLADRGKFYSR 2091
            ELQ+ NH+R  K PI +FILK+S LGNLIDS+S+S++NKVV+Q+GFLG+QL+D+GKFYS+
Sbjct: 657  ELQMENHIRVAKEPIADFILKTSSLGNLIDSRSDSAVNKVVQQIGFLGMQLSDKGKFYSK 716

Query: 2090 NLVEDMTSLFLHKYAVNGVECPSEAFGLIKSCFFHGLNPYEDLVHSISSREVLVRSSRGL 1911
             LVED+   F   Y  + ++ PS  FGLIKSCFF GL+PYE +VHSIS+REV+VRS+RGL
Sbjct: 717  TLVEDVAHQFQSIYPSDAIDYPSAEFGLIKSCFFRGLDPYEGIVHSISTREVMVRSTRGL 776

Query: 1910 TEPGTLFKNLMTILRDVVICYDGTVRNVCSNSIIQFQYAVEAGMNPHRFYPSGEPVGALA 1731
            +EPGTLFKNLM ILRDVVICYDGTVRNV SNSIIQFQY + A   P   +P+GEPVG LA
Sbjct: 777  SEPGTLFKNLMAILRDVVICYDGTVRNVSSNSIIQFQYGLSARTRPQ--FPAGEPVGVLA 834

Query: 1730 ATAISNPAYKAVLDXXXXSNASWDLMKEILVCKINFMNDTNDRRVILYLNDCCCVKKHCK 1551
            ATA+SNPAYKAVLD    SN+SW+LMKEIL+CK++F ND  DRRVILYL DC C +K+C+
Sbjct: 835  ATAMSNPAYKAVLDSSPSSNSSWELMKEILLCKVSFKNDPIDRRVILYLKDCDCGRKYCQ 894

Query: 1550 ENAAFLVQNQLKKVSLKDISVDFLIEYQNSQTSQESSGINTRLVGHIHLDKKRLKDLDRS 1371
            ENAA+LV+N L++V LKDI+VDF+IEYQ  Q   E   I   LVGHI L+K  LK+L  S
Sbjct: 895  ENAAYLVKNHLRRVKLKDIAVDFIIEYQQQQIVSE---IEAGLVGHILLNKDLLKELSVS 951

Query: 1370 MHEVLLKCQETISFFRRKKKNKLVDYLKNIFLSVSECCYFEQSYDSEWCQIPCLQFSWRL 1191
            + E+ +KCQETI+ FR+KKK    +  K   L VSE C  +QS   +W  +PCL F +R 
Sbjct: 952  VQEIHMKCQETINSFRKKKKT--AETFKRTDLFVSESCSIQQSCVDKWLDMPCLMFFFR- 1008

Query: 1190 DPGGPSIETISQIMTNMICPILLDTIIKGDRRVYAANIIWISPDTNTWVKNHSSTPHGEL 1011
            +    ++++  QI+ ++I P+LL T+IKGD R+ +A IIW++PD  TW++N S T  GEL
Sbjct: 1009 NTNDDNLDSAIQILADIIYPVLLQTVIKGDPRICSAKIIWVNPDATTWIRNPSKTQKGEL 1068

Query: 1010 ALEIILEKKFVKQHGDAWRLALDSCLPMIDLIDTRRSIPYAIRQVQEILGISCAFDQAVQ 831
            ALE++LEK  VKQ+GDAWR  +D CLP++++IDT RSIPYAI+QV+++LGISCAF+QAVQ
Sbjct: 1069 ALEVVLEKSAVKQNGDAWRTVIDCCLPVLNIIDTHRSIPYAIKQVEQLLGISCAFEQAVQ 1128

Query: 830  RLSTSIRMVNKGVLKEHLVLAVNSMTCTGSLIGFNKGGYKALFRSLNVQIPFTEATLFTP 651
            RLSTS+ MV +GVLKEHL+L  NSMTC G+LIGFN GGYK L RSLN+Q+PFTEATLFTP
Sbjct: 1129 RLSTSVSMVTRGVLKEHLMLLANSMTCCGNLIGFNSGGYKTLSRSLNIQVPFTEATLFTP 1188

Query: 650  RKCFERAAEKCHTDTLSGIVASCSWGKQVAVGSGTHFEILWNKNEVQSDQNGVVDIYNFL 471
            RKCFERAAEKC+ D+LS IVASCSWGK+VAVG+G+ F++LWN+ E  SDQ   +D+YNFL
Sbjct: 1189 RKCFERAAEKCYDDSLSSIVASCSWGKRVAVGTGSRFDLLWNQ-ESGSDQMSGMDVYNFL 1247

Query: 470  QLVRSSGG-ESNTSCLGEDYDEFESGVAEPFSPEQDFG--KPTFDD-ADLQCDVEHHHTG 303
             +V  +GG  SNT+CLGE+ D+         SP+   G  KP F+D A+ + +++     
Sbjct: 1248 HMVSGAGGSNSNTACLGEEVDDLMDEWC--LSPDHSTGLDKPVFEDAAEFENNLDGQSAS 1305

Query: 302  VDWGAVAAKPSEGD---PADGWNTKGPQEMSSKKSVDSWGKQIEESDAKGWGASADRETL 132
             +W    +     D    A GWN           +  S  KQ E S   GWGAS      
Sbjct: 1306 ANWEKDVSLDKVSDVGWDASGWNKNAEDVDKFAAAATSSEKQNEWS---GWGASKSNSQD 1362

Query: 131  GGTPAERGSVGGWNTTA 81
             G  A    + GWN  A
Sbjct: 1363 VGWDA----LSGWNKNA 1375


>ref|XP_012449583.1| PREDICTED: DNA-directed RNA polymerase V subunit 1 isoform X1
            [Gossypium raimondii] gi|763800932|gb|KJB67887.1|
            hypothetical protein B456_010G216600 [Gossypium
            raimondii]
          Length = 1966

 Score = 1586 bits (4106), Expect = 0.0
 Identities = 815/1397 (58%), Positives = 1012/1397 (72%), Gaps = 11/1397 (0%)
 Frame = -2

Query: 4238 MEENVPPLV-DARITDIRFSVATDDXXXXXXXXXXXINHPSQLTNPFLGLPLESGKCESC 4062
            MEEN   ++ D  I  I+F +AT             INH SQL+N +LGLPLE GKC +C
Sbjct: 1    MEENSSSVILDGEIVGIKFCLATPKEILTASVSGFPINHVSQLSNSYLGLPLEFGKCSAC 60

Query: 4061 GTQEPGKCEGHFGYIQLPIPIYHPCHVTEXXXXXXXXXXXXXXXXXXXNVGSDKSSK--- 3891
            GT EPG+CEGHFGYI+LPIPIYHP H++E                    + S   ++   
Sbjct: 61   GTSEPGQCEGHFGYIELPIPIYHPSHISELKRLLSLLCLKCLKLKNKFQMKSGSVAERLL 120

Query: 3890 SPCLYCLDIPIILINEAKTSDGVVLLELKLAGRSQLYDGFWNFLDKYGYRYGDGKRRILL 3711
            S C  C + P + I E KT+DG   LELK   R    +  WNFL++YG+RYGD   R LL
Sbjct: 121  SSC--CENTPQVSIKEVKTTDGACYLELKQPSRQSKTN--WNFLERYGFRYGDHHTRTLL 176

Query: 3710 PCEVHEILKRFSVETRKKLSSKGYFPQDGYILQKVPVPPNCLSIPXXXXXXXXXXXXXXX 3531
            PCEV EILKR   +TR+KLS KG+FPQ+GYILQ +PVPPNCLS+P               
Sbjct: 177  PCEVVEILKRIPSQTRRKLSGKGFFPQEGYILQYLPVPPNCLSVPDVSDGVSVMSSDLST 236

Query: 3530 XMLRKVLKQAEIIKCSRSGRPNFESHKVEVNDLQSVVAQYFRARGTAKDTRAVKMRPGTT 3351
             MLRKVLKQ EIIK SRSG PNFESH+VE NDLQS V QY + RGT K +R++  R G  
Sbjct: 237  SMLRKVLKQVEIIKSSRSGTPNFESHEVEANDLQSAVEQYLQVRGTVKASRSIDARYGVN 296

Query: 3350 KEAEDSATKAWLEKMRTFFISKGSGYCSRGVITGDAYKKVNEIGLPLEVAQRITFEEKVT 3171
            K+A DS+TKAWLEKMRT FI KGSG+ SR VITGD YKKVNEIG+P E+AQRITFEE+V 
Sbjct: 297  KDASDSSTKAWLEKMRTLFIRKGSGFSSRSVITGDPYKKVNEIGIPSEIAQRITFEERVN 356

Query: 3170 ECNKDHLQELVDKKLCLTYKDGASMYSLREGSKGHTLLKVGQVVHRRIMDGDILFINRPP 2991
              N  +LQ LVD KLCLTY+DG S YSLREGSKGHT L+ GQVVHRRIMDGDI+FINRPP
Sbjct: 357  MHNMRYLQNLVDNKLCLTYRDGGSTYSLREGSKGHTFLRPGQVVHRRIMDGDIVFINRPP 416

Query: 2990 STHKHSLQALSVYVHEDNTVKINPLICGPLDADFDGDCVHLFYPQSLAARAEVVELFSVE 2811
            +THKHSLQALSVYVH+D+TVKINPLICGPL ADFDGDC+HLFYPQSL+A+AEV ELFSVE
Sbjct: 417  TTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLSAKAEVYELFSVE 476

Query: 2810 QQLLSSHSGCLNLQLKNDSLLSLKIMFKRFFLNKVTAQQLAMFITTNLPQPALLKANCVA 2631
            +QLLSSHSG LNLQL  DSLLSL++M K F   K  AQQL+MF+++ LP+PA LK N VA
Sbjct: 477  KQLLSSHSGNLNLQLATDSLLSLRVMLKTFLFKKADAQQLSMFLSSALPEPAFLKCNHVA 536

Query: 2630 SQWTVLQILQMALPSQFDCLGERFFISDGEILKVDFNKDILQSMFNDIISSVLFQMDSKE 2451
              WT  QILQ A P+  DC  +R+ I   +ILKVDFNKD++QS+ N++++S+ ++   KE
Sbjct: 537  PCWTAFQILQTAFPACLDCSSDRYLIGKSDILKVDFNKDLMQSVINEVVASIFYEKGPKE 596

Query: 2450 ALNVFNSLQPLLMENLFLDGYSVCLKDFYISKSVLGNLPRSIQEVSPLLRQLRSTYNELV 2271
             LN F+SLQPLLMEN+F +G++VCL+DF +S+ V+ N+ + IQ +SPLL QLRSTYNELV
Sbjct: 597  VLNFFDSLQPLLMENIFAEGFTVCLEDFSVSREVIENIQKDIQVISPLLYQLRSTYNELV 656

Query: 2270 ELQVGNHLRNVKAPIVNFILKSSGLGNLIDSKSESSINKVVEQMGFLGLQLADRGKFYSR 2091
            ELQ+ NH+R  K PI +FILK+S LGNLIDS+S+S++NKVV+Q+GFLG+QL+D+GKFYS+
Sbjct: 657  ELQMENHIRVAKEPIADFILKTSSLGNLIDSRSDSAVNKVVQQIGFLGMQLSDKGKFYSK 716

Query: 2090 NLVEDMTSLFLHKYAVNGVECPSEAFGLIKSCFFHGLNPYEDLVHSISSREVLVRSSRGL 1911
             LVED+   F   Y  + ++ PS  FGLIKSCFF GL+PYE +VHSIS+REV+VRS+RGL
Sbjct: 717  TLVEDVAHQFQSIYPSDAIDYPSAEFGLIKSCFFRGLDPYEGIVHSISTREVMVRSTRGL 776

Query: 1910 TEPGTLFKNLMTILRDVVICYDGTVRNVCSNSIIQFQYAVEAGMNPHRFYPSGEPVGALA 1731
            +EPGTLFKNLM ILRDVVICYDGTVRNV SNSIIQFQY + A   P   +P+GEPVG LA
Sbjct: 777  SEPGTLFKNLMAILRDVVICYDGTVRNVSSNSIIQFQYGLSARTRPQ--FPAGEPVGVLA 834

Query: 1730 ATAISNPAYKAVLDXXXXSNASWDLMKEILVCKINFMNDTNDRRVILYLNDCCCVKKHCK 1551
            ATA+SNPAYKAVLD    SN+SW+LMKEIL+CK++F ND  DRRVILYL DC C +K+C+
Sbjct: 835  ATAMSNPAYKAVLDSSPSSNSSWELMKEILLCKVSFKNDPIDRRVILYLKDCDCGRKYCQ 894

Query: 1550 ENAAFLVQNQLKKVSLKDISVDFLIEYQNSQTSQESSGINTRLVGHIHLDKKRLKDLDRS 1371
            ENAA+LV+N L++V LKDI+VDF+IEYQ  Q   E   I   LVGHI L+K  LK+L  S
Sbjct: 895  ENAAYLVKNHLRRVKLKDIAVDFIIEYQQQQIVSE---IEAGLVGHILLNKDLLKELSVS 951

Query: 1370 MHEVLLKCQETISFFRRKKKNKLVDYLKNIFLSVSECCYFEQSYDSEWCQIPCLQFSWRL 1191
            + E+ +KCQETI+ FR+KKK    +  K   L VSE C  +QS   +W  +PCL F +R 
Sbjct: 952  VQEIHMKCQETINSFRKKKKT--AETFKRTDLFVSESCSIQQSCVDKWLDMPCLMFFFR- 1008

Query: 1190 DPGGPSIETISQIMTNMICPILLDTIIKGDRRVYAANIIWISPDTNTWVKNHSSTPHGEL 1011
            +    ++++  QI+ ++I P+LL T+IKGD R+ +A IIW++PD  TW++N S T  GEL
Sbjct: 1009 NTNDDNLDSAIQILADIIYPVLLQTVIKGDPRICSAKIIWVNPDATTWIRNPSKTQKGEL 1068

Query: 1010 ALEIILEKKFVKQHGDAWRLALDSCLPMIDLIDTRRSIPYAIRQVQEILGISCAFDQAVQ 831
            ALE++LEK  VKQ+GDAWR  +D CLP++++IDT RSIPYAI+QV+++LGISCAF+QAVQ
Sbjct: 1069 ALEVVLEKSAVKQNGDAWRTVIDCCLPVLNIIDTHRSIPYAIKQVEQLLGISCAFEQAVQ 1128

Query: 830  RLSTSIRMVNKGVLKEHLVLAVNSMTCTGSLIGFNKGGYKALFRSLNVQIPFTEATLFTP 651
            RLSTS+ MV +GVLKEHL+L  NSMTC G+LIGFN GGYK L RSLN+Q+PFTEATLFTP
Sbjct: 1129 RLSTSVSMVTRGVLKEHLMLLANSMTCCGNLIGFNSGGYKTLSRSLNIQVPFTEATLFTP 1188

Query: 650  RKCFERAAEKCHTDTLSGIVASCSWGKQVAVGSGTHFEILWNKNEVQSDQNGVVDIYNFL 471
            RKCFERAAEKC+ D+LS IVASCSWGK+VAVG+G+ F++LWN+ E  SDQ   +D+YNFL
Sbjct: 1189 RKCFERAAEKCYDDSLSSIVASCSWGKRVAVGTGSRFDLLWNQ-ESGSDQMSGMDVYNFL 1247

Query: 470  QLVRSSGG-ESNTSCLGEDYDEFESGVAEPFSPEQDFG--KPTFDD-ADLQCDVEHHHTG 303
             +V  +GG  SNT+CLGE+ D+         SP+   G  KP F+D A+ + +++     
Sbjct: 1248 HMVSGAGGSNSNTACLGEEVDDLMDEWC--LSPDHSTGLDKPVFEDAAEFENNLDGQSAS 1305

Query: 302  VDWGAVAAKPSEGD---PADGWNTKGPQEMSSKKSVDSWGKQIEESDAKGWGASADRETL 132
             +W    +     D    A GWN           +  S  KQ E S   GWGAS      
Sbjct: 1306 ANWEKDVSLDKVSDVGWDASGWNKNAEDVDKFAAAATSSEKQNEWS---GWGASKSNSQD 1362

Query: 131  GGTPAERGSVGGWNTTA 81
             G  A    + GWN  A
Sbjct: 1363 VGWDA----LSGWNKNA 1375


>ref|XP_012449584.1| PREDICTED: DNA-directed RNA polymerase V subunit 1 isoform X2
            [Gossypium raimondii]
          Length = 1921

 Score = 1583 bits (4099), Expect = 0.0
 Identities = 812/1399 (58%), Positives = 1013/1399 (72%), Gaps = 13/1399 (0%)
 Frame = -2

Query: 4238 MEENVPPLV-DARITDIRFSVATDDXXXXXXXXXXXINHPSQLTNPFLGLPLESGKCESC 4062
            MEEN   ++ D  I  I+F +AT             INH SQL+N +LGLPLE GKC +C
Sbjct: 1    MEENSSSVILDGEIVGIKFCLATPKEILTASVSGFPINHVSQLSNSYLGLPLEFGKCSAC 60

Query: 4061 GTQEPGKCEGHFGYIQLPIPIYHPCHVTEXXXXXXXXXXXXXXXXXXXNVGSDKSSK--- 3891
            GT EPG+CEGHFGYI+LPIPIYHP H++E                    + S   ++   
Sbjct: 61   GTSEPGQCEGHFGYIELPIPIYHPSHISELKRLLSLLCLKCLKLKNKFQMKSGSVAERLL 120

Query: 3890 SPCLYCLDIPIILINEAKTSDGVVLLELKLAGRSQLYDGFWNFLDKYGYRYGDGKRRILL 3711
            S C  C + P + I E KT+DG   LELK   R    +  WNFL++YG+RYGD   R LL
Sbjct: 121  SSC--CENTPQVSIKEVKTTDGACYLELKQPSRQSKTN--WNFLERYGFRYGDHHTRTLL 176

Query: 3710 PCEVHEILKRFSVETRKKLSSKGYFPQDGYILQKVPVPPNCLSIPXXXXXXXXXXXXXXX 3531
            PCEV EILKR   +TR+KLS KG+FPQ+GYILQ +PVPPNCLS+P               
Sbjct: 177  PCEVVEILKRIPSQTRRKLSGKGFFPQEGYILQYLPVPPNCLSVPDVSDGVSVMSSDLST 236

Query: 3530 XMLRKVLKQAEIIKCSRSGRPNFESHKVEVNDLQSVVAQYFRARGTAKDTRAVKMRPGTT 3351
             MLRKVLKQ EIIK SRSG PNFESH+VE NDLQS V QY + RGT K +R++  R G  
Sbjct: 237  SMLRKVLKQVEIIKSSRSGTPNFESHEVEANDLQSAVEQYLQVRGTVKASRSIDARYGVN 296

Query: 3350 KEAEDSATKAWLEKMRTFFISKGSGYCSRGVITGDAYKKVNEIGLPLEVAQRITFEEKVT 3171
            K+A DS+TKAWLEKMRT FI KGSG+ SR VITGD YKKVNEIG+P E+AQRITFEE+V 
Sbjct: 297  KDASDSSTKAWLEKMRTLFIRKGSGFSSRSVITGDPYKKVNEIGIPSEIAQRITFEERVN 356

Query: 3170 ECNKDHLQELVDKKLCLTYKDGASMYSLREGSKGHTLLKVGQVVHRRIMDGDILFINRPP 2991
              N  +LQ LVD KLCLTY+DG S YSLREGSKGHT L+ GQVVHRRIMDGDI+FINRPP
Sbjct: 357  MHNMRYLQNLVDNKLCLTYRDGGSTYSLREGSKGHTFLRPGQVVHRRIMDGDIVFINRPP 416

Query: 2990 STHKHSLQALSVYVHEDNTVKINPLICGPLDADFDGDCVHLFYPQSLAARAEVVELFSVE 2811
            +THKHSLQALSVYVH+D+TVKINPLICGPL ADFDGDC+HLFYPQSL+A+AEV ELFSVE
Sbjct: 417  TTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLSAKAEVYELFSVE 476

Query: 2810 QQLLSSHSGCLNLQLKNDSLLSLKIMFKRFFLNKVTAQQLAMFITTNLPQPALLKANCVA 2631
            +QLLSSHSG LNLQL  DSLLSL++M K F   K  AQQL+MF+++ LP+PA LK N VA
Sbjct: 477  KQLLSSHSGNLNLQLATDSLLSLRVMLKTFLFKKADAQQLSMFLSSALPEPAFLKCNHVA 536

Query: 2630 SQWTVLQILQMALPSQFDCLGERFFISDGEILKVDFNKDILQSMFNDIISSVLFQMDSKE 2451
              WT  QILQ A P+  DC  +R+ I   +ILKVDFNKD++QS+ N++++S+ ++   KE
Sbjct: 537  PCWTAFQILQTAFPACLDCSSDRYLIGKSDILKVDFNKDLMQSVINEVVASIFYEKGPKE 596

Query: 2450 ALNVFNSLQPLLMENLFLDGYSVCLKDFYISKSVLGNLPRSIQEVSPLLRQLRSTYNELV 2271
             LN F+SLQPLLMEN+F +G++VCL+DF +S+ V+ N+ + IQ +SPLL QLRSTYNELV
Sbjct: 597  VLNFFDSLQPLLMENIFAEGFTVCLEDFSVSREVIENIQKDIQVISPLLYQLRSTYNELV 656

Query: 2270 ELQVGNHLRNVKAPIVNFILKSSGLGNLIDSKSESSINKVVEQMGFLGLQLADRGKFYSR 2091
            ELQ+ NH+R  K PI +FILK+S LGNLIDS+S+S++NKVV+Q+GFLG+QL+D+GKFYS+
Sbjct: 657  ELQMENHIRVAKEPIADFILKTSSLGNLIDSRSDSAVNKVVQQIGFLGMQLSDKGKFYSK 716

Query: 2090 NLVEDMTSLFLHKYAVNGVECPSEAFGLIKSCFFHGLNPYEDLVHSISSREVLVRSSRGL 1911
             LVED+   F   Y  + ++ PS  FGLIKSCFF GL+PYE +VHSIS+REV+VRS+RGL
Sbjct: 717  TLVEDVAHQFQSIYPSDAIDYPSAEFGLIKSCFFRGLDPYEGIVHSISTREVMVRSTRGL 776

Query: 1910 TEPGTLFKNLMTILRDVVICYDGTVRNVCSNSIIQFQYAVEAGMNPHRFYPSGEPVGALA 1731
            +EPGTLFKNLM ILRDVVICYDGTVRNV SNSIIQFQY + A   P   +P+GEPVG LA
Sbjct: 777  SEPGTLFKNLMAILRDVVICYDGTVRNVSSNSIIQFQYGLSARTRPQ--FPAGEPVGVLA 834

Query: 1730 ATAISNPAYKAVLDXXXXSNASWDLMKEILVCKINFMNDTNDRRVILYLNDCCCVKKHCK 1551
            ATA+SNPAYKAVLD    SN+SW+LMKEIL+CK++F ND  DRRVILYL DC C +K+C+
Sbjct: 835  ATAMSNPAYKAVLDSSPSSNSSWELMKEILLCKVSFKNDPIDRRVILYLKDCDCGRKYCQ 894

Query: 1550 ENAAFLVQNQLKKVSLKDISVDFLIEYQNSQTSQESSGINTRLVGHIHLDKKRLKDLDRS 1371
            ENAA+LV+N L++V LKDI+VDF+IEYQ  Q   E   I   LVGHI L+K  LK+L  S
Sbjct: 895  ENAAYLVKNHLRRVKLKDIAVDFIIEYQQQQIVSE---IEAGLVGHILLNKDLLKELSVS 951

Query: 1370 MHEVLLKCQETISFFRRKKKNKLVDYLKNIFLSVSECCYFEQSYDSEWCQIPCLQFSWRL 1191
            + E+ +KCQETI+ FR+KKK    +  K   L VSE C  +QS   +W  +PCL F +R 
Sbjct: 952  VQEIHMKCQETINSFRKKKKT--AETFKRTDLFVSESCSIQQSCVDKWLDMPCLMFFFR- 1008

Query: 1190 DPGGPSIETISQIMTNMICPILLDTIIKGDRRVYAANIIWISPDTNTWVKNHSSTPHGEL 1011
            +    ++++  QI+ ++I P+LL T+IKGD R+ +A IIW++PD  TW++N S T  GEL
Sbjct: 1009 NTNDDNLDSAIQILADIIYPVLLQTVIKGDPRICSAKIIWVNPDATTWIRNPSKTQKGEL 1068

Query: 1010 ALEIILEKKFVKQHGDAWRLALDSCLPMIDLIDTRRSIPYAIRQVQEILGISCAFDQAVQ 831
            ALE++LEK  VKQ+GDAWR  +D CLP++++IDT RSIPYAI+QV+++LGISCAF+QAVQ
Sbjct: 1069 ALEVVLEKSAVKQNGDAWRTVIDCCLPVLNIIDTHRSIPYAIKQVEQLLGISCAFEQAVQ 1128

Query: 830  RLSTSIRMVNKGVLKEHLVLAVNSMTCTGSLIGFNKGGYKALFRSLNVQIPFTEATLFTP 651
            RLSTS+ MV +GVLKEHL+L  NSMTC G+LIGFN GGYK L RSLN+Q+PFTEATLFTP
Sbjct: 1129 RLSTSVSMVTRGVLKEHLMLLANSMTCCGNLIGFNSGGYKTLSRSLNIQVPFTEATLFTP 1188

Query: 650  RKCFERAAEKCHTDTLSGIVASCSWGKQVAVGSGTHFEILWNKNEVQSDQNGVVDIYNFL 471
            RKCFERAAEKC+ D+LS IVASCSWGK+VAVG+G+ F++LWN+ E  SDQ   +D+YNFL
Sbjct: 1189 RKCFERAAEKCYDDSLSSIVASCSWGKRVAVGTGSRFDLLWNQ-ESGSDQMSGMDVYNFL 1247

Query: 470  QLVRSSGG-ESNTSCLGEDYDEFESGVAEPFSPEQDFG--KPTFDD-ADLQCDVEHHHTG 303
             +V  +GG  SNT+CLGE+ D+         SP+   G  KP F+D A+ + +++     
Sbjct: 1248 HMVSGAGGSNSNTACLGEEVDDLMDEWC--LSPDHSTGLDKPVFEDAAEFENNLDGQSAS 1305

Query: 302  VDWGAVAAKPSEGD---PADGWNTKGPQEMSSKKSVDSWGKQIEESDAKGWGASADRETL 132
             +W    +     D    A GWN           +  S  KQ E S   GWGAS     +
Sbjct: 1306 ANWEKDVSLDKVSDVGWDASGWNKNAEDVDKFAAAATSSEKQNEWS---GWGASKSNSQV 1362

Query: 131  GGTPAERG--SVGGWNTTA 81
                 + G  ++  W+  A
Sbjct: 1363 VSPKVDVGWDALSAWHKNA 1381


>ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Citrus
            sinensis]
          Length = 1865

 Score = 1583 bits (4099), Expect = 0.0
 Identities = 834/1455 (57%), Positives = 1032/1455 (70%), Gaps = 44/1455 (3%)
 Frame = -2

Query: 4238 MEENVPP-LVDARITDIRFSVATDDXXXXXXXXXXXINHPSQLTNPFLGLPLESGKCESC 4062
            MEEN    +++ +I  IRF +AT             I+H SQL NPFLGLPLE GKCESC
Sbjct: 1    MEENTSSTILEGQIVGIRFGLATQKEICTASISDCSISHASQLANPFLGLPLEFGKCESC 60

Query: 4061 GTQEPGKCEGHFGYIQLPIPIYHPCHVTEXXXXXXXXXXXXXXXXXXXNV----GSDKSS 3894
            GT EPGKCEGHFGYI+LPIPIYHP H++E                         G  +  
Sbjct: 61   GTSEPGKCEGHFGYIELPIPIYHPSHISELKHMLSLLCLKCLKMKSTKFQIKNDGVAQRL 120

Query: 3893 KSPCLYCLDIPIILINEAKTSDGVVLLELKLAGRSQLYDGFWNFLDKYGYRYGDGKRRIL 3714
             S C  C +   + I + KT+DG   LELKL  + +L  GFWNFL++YG+RYGD   R L
Sbjct: 121  LSSC--CEEASQVSIVDVKTTDGAFYLELKLPSKFRLCAGFWNFLERYGFRYGDSLTRTL 178

Query: 3713 LPCEVHEILKRFSVETRKKLSSKGYFPQDGYILQKVPVPPNCLSIPXXXXXXXXXXXXXX 3534
            L  EV E+LKR   ETRKKL+ KGYFPQDGYIL+ +PVPPNCLS+P              
Sbjct: 179  LASEVKEMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLS 238

Query: 3533 XXMLRKVLKQAEIIKCSRSGRPNFESHKVEVNDLQSVVAQYFRARGTAKDTRAVKMRPGT 3354
              ML+KVLKQ EII+ SRSG PNFES +VE NDLQ  V QY   RGTAK +R V  R G 
Sbjct: 239  IAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGV 298

Query: 3353 TKEAEDSATKAWLEKMRTFFISKGSGYCSRGVITGDAYKKVNEIGLPLEVAQRITFEEKV 3174
            +++  +S TKAWLEKMRT FI KGSG+ SR VITGDAYK+VNEIG+P E+AQRITFEE+V
Sbjct: 299  SQDP-NSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERV 357

Query: 3173 TECNKDHLQELVDKKLCLTYKDGASMYSLREGSKGHTLLKVGQVVHRRIMDGDILFINRP 2994
               N ++LQELVD KLCLTY DG+S YSLREGSKGHT L+ GQVVHRRIMDGD +FINRP
Sbjct: 358  NVHNINYLQELVDNKLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRP 417

Query: 2993 PSTHKHSLQALSVYVHEDNTVKINPLICGPLDADFDGDCVHLFYPQSLAARAEVVELFSV 2814
            P+THKHSLQALSVYVH+D+TVKINPLICGPL ADFDGDC+HLFYPQSLAA+AEV+ELFSV
Sbjct: 418  PTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSV 477

Query: 2813 EQQLLSSHSGCLNLQLKNDSLLSLKIMFKRFFLNKVTAQQLAMFITTNLPQPALLKANCV 2634
            E+QLLSSH+G LNLQL  D+LLSLK+MFK++FL+K   QQLAMF  + LP+PAL KA C 
Sbjct: 478  EKQLLSSHNGNLNLQLATDALLSLKVMFKKYFLDKAFTQQLAMFALSPLPRPALSKARC- 536

Query: 2633 ASQWTVLQILQMALPSQFDCLGERFFISDGEILKVDFNKDILQSMFNDIISSVLFQMDSK 2454
            +++WT LQILQ  LP  FD  G+R+ I   E+LK DF++D + S+ N+I++S+ F+   +
Sbjct: 537  SARWTALQILQSVLPPGFDSCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPE 596

Query: 2453 EALNVFNSLQPLLMENLFLDGYSVCLKDFYISKSVLGNLPRSIQEVSPLLRQLRSTYNEL 2274
            E L  F+SLQPLLMENLF DG+SV L+DF +SK+ L N+ + IQ +  LL    ST NEL
Sbjct: 597  EVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNEL 656

Query: 2273 VELQVGNHLRNVKAPIVNFILKSSGLGNLIDSKSESSINKVVEQMGFLGLQLADRGKFYS 2094
            V+LQ+ NH+R+VK  +  FILKSS LG LIDSKS+S+++KVV+Q GFLGLQL+DRGKFYS
Sbjct: 657  VDLQIENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYS 716

Query: 2093 RNLVEDMTSLFLHKYAVNGVECPSEAFGLIKSCFFHGLNPYEDLVHSISSREVLVRSSRG 1914
            + LVED+ S F   Y ++ +  P+  +GLIK CFFHGL+PYE++ HSIS+REV+VRSSRG
Sbjct: 717  KTLVEDIASHFERIYPMD-LNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRG 775

Query: 1913 LTEPGTLFKNLMTILRDVVICYDGTVRNVCSNSIIQFQYAVEAGMNPHRFYPSGEPVGAL 1734
            L+EPGTLFKNLM +LRDVVICYDGTVRNVCSNSIIQF YAV A    H  +P+GEPVG L
Sbjct: 776  LSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNA-RKSHSLFPAGEPVGVL 834

Query: 1733 AATAISNPAYKAVLDXXXXSNASWDLMKEILVCKINFMNDTNDRRVILYLNDCCCVKKHC 1554
            AATA+SNPAYKAVLD    SN SW+LMKEIL+C+++F ND  DRRVILYLNDC C +K+C
Sbjct: 835  AATAMSNPAYKAVLDSSPSSNNSWELMKEILLCRVSFNNDPIDRRVILYLNDCGCGRKYC 894

Query: 1553 KENAAFLVQNQLKKVSLKDISVDFLIEYQNSQTSQESSGINTRLVGHIHLDKKRLKDLDR 1374
            +E AA++V+NQLK+VSLKD +V+FLIEY+  +   +  G    LVGHIHL+K  L+DL  
Sbjct: 895  QERAAYMVKNQLKRVSLKDAAVEFLIEYKKPEIISDDEG----LVGHIHLNKILLEDLRI 950

Query: 1373 SMHEVLLKCQETI-SFFRRKKKNKLVDYLKNIFLSVSECCYFEQSYDSEWCQIPCLQFSW 1197
            SMH++L KCQET+ SF ++KK  K+V + KN  LSVSECC F+QS   +   +PCL F  
Sbjct: 951  SMHDILPKCQETLKSFCKKKKMKKVVQFFKNTSLSVSECCSFQQSCADKRSNMPCLMFVL 1010

Query: 1196 RLDPGGPSIETISQIMTNMICPILLDTIIKGDRRVYAANIIWISPDTNTWVKNHSSTPHG 1017
            R       ++ +S ++ NMI P+LL+TIIKGD R+Y+ANIIWISPDT  W++N S    G
Sbjct: 1011 R-GASDSYLDKLSGVLANMIYPVLLETIIKGDPRIYSANIIWISPDTTAWIRNPSKNRKG 1069

Query: 1016 ELALEIILEKKFVKQHGDAWRLALDSCLPMIDLIDTRRSIPYAIRQVQEILGISCAFDQA 837
            ELAL+++LEK  VKQ GDAWR  LDSCLP+  LIDTRRS+PYAI+QVQE+LG+SCAF+QA
Sbjct: 1070 ELALDVVLEKSVVKQSGDAWRTVLDSCLPVFHLIDTRRSVPYAIKQVQELLGVSCAFEQA 1129

Query: 836  VQRLSTSIRMVNKGVLKEHLVLAVNSMTCTGSLIGFNKGGYKALFRSLNVQIPFTEATLF 657
            VQRLS S+ MV KGVLKEHL+L  NSMTC G L+GFN GGYKAL RSLNVQ+PFTEATLF
Sbjct: 1130 VQRLSASVTMVAKGVLKEHLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLF 1189

Query: 656  TPRKCFERAAEKCHTDTLSGIVASCSWGKQVAVGSGTHFEILWNKNEVQSDQNGVVDIYN 477
            TPRKCFE+AAEKCHTD LS +VA+CSWGK VAVG+G+ F++LW     + +Q+  VD+Y+
Sbjct: 1190 TPRKCFEKAAEKCHTDNLSSVVAACSWGKHVAVGTGSRFDLLWQTENEEFNQDDGVDVYD 1249

Query: 476  FLQLVRSSGG--ESNTSCLGEDYDEFESGVAEPFSPEQDF--GKPTFDD-ADLQCDVEHH 312
            FL +VRSS G  ES+T CLGE+ D  E       SPE +    KP F+D  + Q  +E+ 
Sbjct: 1250 FLHMVRSSTGIEESDTGCLGEEVDGLEDEFDWSLSPEHNLCSDKPVFEDLVEDQSWLENK 1309

Query: 311  HTGVDWGAVA--AKPSEG----------DPADGWNTKGPQEMSSKKSVDSWGKQIEESDA 168
                +W + A   K SE            P+ GW T+G    SS   ++  G    +   
Sbjct: 1310 QENANWDSEADCRKSSEDKWEKLGTSLEKPSSGWRTEGAWGKSSDDKLEKAGSPSRKPSG 1369

Query: 167  KG----WG-ASADRETLGGTPA-----ERGSVGGWNTTASQKLPSEEPA----------D 48
             G    WG +S D+    G+PA     E G+   W  +   K  +  PA           
Sbjct: 1370 WGTEASWGESSCDKWENVGSPAAKSFSEWGTEASWGKSFGDKPENVSPAAKTSSGWGSEA 1429

Query: 47   AWGKST-DRKSVV*G 6
            +WGKS+ DR+  V G
Sbjct: 1430 SWGKSSGDRQENVGG 1444


>gb|KJB67888.1| hypothetical protein B456_010G216600 [Gossypium raimondii]
          Length = 1406

 Score = 1582 bits (4096), Expect = 0.0
 Identities = 809/1374 (58%), Positives = 1005/1374 (73%), Gaps = 11/1374 (0%)
 Frame = -2

Query: 4238 MEENVPPLV-DARITDIRFSVATDDXXXXXXXXXXXINHPSQLTNPFLGLPLESGKCESC 4062
            MEEN   ++ D  I  I+F +AT             INH SQL+N +LGLPLE GKC +C
Sbjct: 1    MEENSSSVILDGEIVGIKFCLATPKEILTASVSGFPINHVSQLSNSYLGLPLEFGKCSAC 60

Query: 4061 GTQEPGKCEGHFGYIQLPIPIYHPCHVTEXXXXXXXXXXXXXXXXXXXNVGSDKSSK--- 3891
            GT EPG+CEGHFGYI+LPIPIYHP H++E                    + S   ++   
Sbjct: 61   GTSEPGQCEGHFGYIELPIPIYHPSHISELKRLLSLLCLKCLKLKNKFQMKSGSVAERLL 120

Query: 3890 SPCLYCLDIPIILINEAKTSDGVVLLELKLAGRSQLYDGFWNFLDKYGYRYGDGKRRILL 3711
            S C  C + P + I E KT+DG   LELK   R    +  WNFL++YG+RYGD   R LL
Sbjct: 121  SSC--CENTPQVSIKEVKTTDGACYLELKQPSRQSKTN--WNFLERYGFRYGDHHTRTLL 176

Query: 3710 PCEVHEILKRFSVETRKKLSSKGYFPQDGYILQKVPVPPNCLSIPXXXXXXXXXXXXXXX 3531
            PCEV EILKR   +TR+KLS KG+FPQ+GYILQ +PVPPNCLS+P               
Sbjct: 177  PCEVVEILKRIPSQTRRKLSGKGFFPQEGYILQYLPVPPNCLSVPDVSDGVSVMSSDLST 236

Query: 3530 XMLRKVLKQAEIIKCSRSGRPNFESHKVEVNDLQSVVAQYFRARGTAKDTRAVKMRPGTT 3351
             MLRKVLKQ EIIK SRSG PNFESH+VE NDLQS V QY + RGT K +R++  R G  
Sbjct: 237  SMLRKVLKQVEIIKSSRSGTPNFESHEVEANDLQSAVEQYLQVRGTVKASRSIDARYGVN 296

Query: 3350 KEAEDSATKAWLEKMRTFFISKGSGYCSRGVITGDAYKKVNEIGLPLEVAQRITFEEKVT 3171
            K+A DS+TKAWLEKMRT FI KGSG+ SR VITGD YKKVNEIG+P E+AQRITFEE+V 
Sbjct: 297  KDASDSSTKAWLEKMRTLFIRKGSGFSSRSVITGDPYKKVNEIGIPSEIAQRITFEERVN 356

Query: 3170 ECNKDHLQELVDKKLCLTYKDGASMYSLREGSKGHTLLKVGQVVHRRIMDGDILFINRPP 2991
              N  +LQ LVD KLCLTY+DG S YSLREGSKGHT L+ GQVVHRRIMDGDI+FINRPP
Sbjct: 357  MHNMRYLQNLVDNKLCLTYRDGGSTYSLREGSKGHTFLRPGQVVHRRIMDGDIVFINRPP 416

Query: 2990 STHKHSLQALSVYVHEDNTVKINPLICGPLDADFDGDCVHLFYPQSLAARAEVVELFSVE 2811
            +THKHSLQALSVYVH+D+TVKINPLICGPL ADFDGDC+HLFYPQSL+A+AEV ELFSVE
Sbjct: 417  TTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLSAKAEVYELFSVE 476

Query: 2810 QQLLSSHSGCLNLQLKNDSLLSLKIMFKRFFLNKVTAQQLAMFITTNLPQPALLKANCVA 2631
            +QLLSSHSG LNLQL  DSLLSL++M K F   K  AQQL+MF+++ LP+PA LK N VA
Sbjct: 477  KQLLSSHSGNLNLQLATDSLLSLRVMLKTFLFKKADAQQLSMFLSSALPEPAFLKCNHVA 536

Query: 2630 SQWTVLQILQMALPSQFDCLGERFFISDGEILKVDFNKDILQSMFNDIISSVLFQMDSKE 2451
              WT  QILQ A P+  DC  +R+ I   +ILKVDFNKD++QS+ N++++S+ ++   KE
Sbjct: 537  PCWTAFQILQTAFPACLDCSSDRYLIGKSDILKVDFNKDLMQSVINEVVASIFYEKGPKE 596

Query: 2450 ALNVFNSLQPLLMENLFLDGYSVCLKDFYISKSVLGNLPRSIQEVSPLLRQLRSTYNELV 2271
             LN F+SLQPLLMEN+F +G++VCL+DF +S+ V+ N+ + IQ +SPLL QLRSTYNELV
Sbjct: 597  VLNFFDSLQPLLMENIFAEGFTVCLEDFSVSREVIENIQKDIQVISPLLYQLRSTYNELV 656

Query: 2270 ELQVGNHLRNVKAPIVNFILKSSGLGNLIDSKSESSINKVVEQMGFLGLQLADRGKFYSR 2091
            ELQ+ NH+R  K PI +FILK+S LGNLIDS+S+S++NKVV+Q+GFLG+QL+D+GKFYS+
Sbjct: 657  ELQMENHIRVAKEPIADFILKTSSLGNLIDSRSDSAVNKVVQQIGFLGMQLSDKGKFYSK 716

Query: 2090 NLVEDMTSLFLHKYAVNGVECPSEAFGLIKSCFFHGLNPYEDLVHSISSREVLVRSSRGL 1911
             LVED+   F   Y  + ++ PS  FGLIKSCFF GL+PYE +VHSIS+REV+VRS+RGL
Sbjct: 717  TLVEDVAHQFQSIYPSDAIDYPSAEFGLIKSCFFRGLDPYEGIVHSISTREVMVRSTRGL 776

Query: 1910 TEPGTLFKNLMTILRDVVICYDGTVRNVCSNSIIQFQYAVEAGMNPHRFYPSGEPVGALA 1731
            +EPGTLFKNLM ILRDVVICYDGTVRNV SNSIIQFQY + A   P   +P+GEPVG LA
Sbjct: 777  SEPGTLFKNLMAILRDVVICYDGTVRNVSSNSIIQFQYGLSARTRPQ--FPAGEPVGVLA 834

Query: 1730 ATAISNPAYKAVLDXXXXSNASWDLMKEILVCKINFMNDTNDRRVILYLNDCCCVKKHCK 1551
            ATA+SNPAYKAVLD    SN+SW+LMKEIL+CK++F ND  DRRVILYL DC C +K+C+
Sbjct: 835  ATAMSNPAYKAVLDSSPSSNSSWELMKEILLCKVSFKNDPIDRRVILYLKDCDCGRKYCQ 894

Query: 1550 ENAAFLVQNQLKKVSLKDISVDFLIEYQNSQTSQESSGINTRLVGHIHLDKKRLKDLDRS 1371
            ENAA+LV+N L++V LKDI+VDF+IEYQ  Q   E   I   LVGHI L+K  LK+L  S
Sbjct: 895  ENAAYLVKNHLRRVKLKDIAVDFIIEYQQQQIVSE---IEAGLVGHILLNKDLLKELSVS 951

Query: 1370 MHEVLLKCQETISFFRRKKKNKLVDYLKNIFLSVSECCYFEQSYDSEWCQIPCLQFSWRL 1191
            + E+ +KCQETI+ FR+KKK    +  K   L VSE C  +QS   +W  +PCL F +R 
Sbjct: 952  VQEIHMKCQETINSFRKKKKT--AETFKRTDLFVSESCSIQQSCVDKWLDMPCLMFFFR- 1008

Query: 1190 DPGGPSIETISQIMTNMICPILLDTIIKGDRRVYAANIIWISPDTNTWVKNHSSTPHGEL 1011
            +    ++++  QI+ ++I P+LL T+IKGD R+ +A IIW++PD  TW++N S T  GEL
Sbjct: 1009 NTNDDNLDSAIQILADIIYPVLLQTVIKGDPRICSAKIIWVNPDATTWIRNPSKTQKGEL 1068

Query: 1010 ALEIILEKKFVKQHGDAWRLALDSCLPMIDLIDTRRSIPYAIRQVQEILGISCAFDQAVQ 831
            ALE++LEK  VKQ+GDAWR  +D CLP++++IDT RSIPYAI+QV+++LGISCAF+QAVQ
Sbjct: 1069 ALEVVLEKSAVKQNGDAWRTVIDCCLPVLNIIDTHRSIPYAIKQVEQLLGISCAFEQAVQ 1128

Query: 830  RLSTSIRMVNKGVLKEHLVLAVNSMTCTGSLIGFNKGGYKALFRSLNVQIPFTEATLFTP 651
            RLSTS+ MV +GVLKEHL+L  NSMTC G+LIGFN GGYK L RSLN+Q+PFTEATLFTP
Sbjct: 1129 RLSTSVSMVTRGVLKEHLMLLANSMTCCGNLIGFNSGGYKTLSRSLNIQVPFTEATLFTP 1188

Query: 650  RKCFERAAEKCHTDTLSGIVASCSWGKQVAVGSGTHFEILWNKNEVQSDQNGVVDIYNFL 471
            RKCFERAAEKC+ D+LS IVASCSWGK+VAVG+G+ F++LWN+ E  SDQ   +D+YNFL
Sbjct: 1189 RKCFERAAEKCYDDSLSSIVASCSWGKRVAVGTGSRFDLLWNQ-ESGSDQMSGMDVYNFL 1247

Query: 470  QLVRSSGG-ESNTSCLGEDYDEFESGVAEPFSPEQDFG--KPTFDD-ADLQCDVEHHHTG 303
             +V  +GG  SNT+CLGE+ D+         SP+   G  KP F+D A+ + +++     
Sbjct: 1248 HMVSGAGGSNSNTACLGEEVDDLMDEWC--LSPDHSTGLDKPVFEDAAEFENNLDGQSAS 1305

Query: 302  VDWGAVAAKPSEGD---PADGWNTKGPQEMSSKKSVDSWGKQIEESDAKGWGAS 150
             +W    +     D    A GWN           +  S  KQ E S   GWGAS
Sbjct: 1306 ANWEKDVSLDKVSDVGWDASGWNKNAEDVDKFAAAATSSEKQNEWS---GWGAS 1356


>ref|XP_010032299.1| PREDICTED: DNA-directed RNA polymerase V subunit 1 [Eucalyptus
            grandis] gi|702477429|ref|XP_010032300.1| PREDICTED:
            DNA-directed RNA polymerase V subunit 1 [Eucalyptus
            grandis] gi|629085358|gb|KCW51715.1| hypothetical protein
            EUGRSUZ_J01182 [Eucalyptus grandis]
          Length = 1814

 Score = 1581 bits (4094), Expect = 0.0
 Identities = 813/1440 (56%), Positives = 1026/1440 (71%), Gaps = 38/1440 (2%)
 Frame = -2

Query: 4238 MEENVPPLVDARITDIRFSVATDDXXXXXXXXXXXINHPSQLTNPFLGLPLESGKCESCG 4059
            MEE     +DA IT I F +A+             I H SQL+NPFLGLPLE G+CESCG
Sbjct: 1    MEETSTAALDAEITAISFGLASRQEICAASVSDCSITHSSQLSNPFLGLPLEFGRCESCG 60

Query: 4058 TQEPGKCEGHFGYIQLPIPIYHPCHVTEXXXXXXXXXXXXXXXXXXXN----VGSDKSSK 3891
            T +PGKCEGHFGYI+LPIPIYHP HV+E                         G  +   
Sbjct: 61   TSDPGKCEGHFGYIELPIPIYHPSHVSELKRMLSLLCLKCLKMRNNKFPIKNAGVGERLL 120

Query: 3890 SPCLYCLDIPIILINEAKTSDGVVLLELKLAGRSQLYDGFWNFLDKYGYRYGDGKRRILL 3711
            + C  C D   + + E KTS+GV  L+LK++ RS+L DGFWNFL++YG+RYGD   R LL
Sbjct: 121  ASC--CEDAAQVSMREVKTSEGVHCLQLKVSSRSRLRDGFWNFLERYGFRYGDNISRPLL 178

Query: 3710 PCEVHEILKRFSVETRKKLSSKGYFPQDGYILQKVPVPPNCLSIPXXXXXXXXXXXXXXX 3531
            PCEV E+LKR   ET++KL+ KGYFPQ+GYI+Q +PVPPNCLS+P               
Sbjct: 179  PCEVVEMLKRIPEETKRKLAGKGYFPQEGYIIQYLPVPPNCLSVPEVSDGVSVMSSDLSV 238

Query: 3530 XMLRKVLKQAEIIKCSRSGRPNFESHKVEVNDLQSVVAQYFRARGTAKDTRAVKMRPGTT 3351
             ML+KVLKQ EIIK SRSG PNFESH VE  DLQ+VV +Y   RGTAK +R +  R G  
Sbjct: 239  TMLKKVLKQVEIIKGSRSGAPNFESHDVEAQDLQNVVNEYLLVRGTAKASRDIDTRYGIG 298

Query: 3350 KEAEDSATKAWLEKMRTFFISKGSGYCSRGVITGDAYKKVNEIGLPLEVAQRITFEEKVT 3171
            KE  D+ATKAWLEKMRT FI KGSG+ SR VITGDA+KKVNEIG+P E+AQRITFEEKV+
Sbjct: 299  KEPSDTATKAWLEKMRTLFIRKGSGFSSRSVITGDAFKKVNEIGIPAEIAQRITFEEKVS 358

Query: 3170 ECNKDHLQELVDKKLCLTYKDGASMYSLREGSKGHTLLKVGQVVHRRIMDGDILFINRPP 2991
              N D+LQ LVDKKLCL Y+DG++MYSLREGSKGHT L+ GQVVHRRIMDGDI+FINRPP
Sbjct: 359  MYNMDYLQGLVDKKLCLAYRDGSAMYSLREGSKGHTSLRPGQVVHRRIMDGDIVFINRPP 418

Query: 2990 STHKHSLQALSVYVHEDNTVKINPLICGPLDADFDGDCVHLFYPQSLAARAEVVELFSVE 2811
            +THKHSLQALSVYVH+D+TVKINPLICGPL ADFDGDCVHLFYPQS +A+AEVVELFSVE
Sbjct: 419  TTHKHSLQALSVYVHDDHTVKINPLICGPLGADFDGDCVHLFYPQSASAKAEVVELFSVE 478

Query: 2810 QQLLSSHSGCLNLQLKNDSLLSLKIMFKRFFLNKVTAQQLAMFITTNLPQPALLKANCVA 2631
            +QLLSSHSG LNLQL  DSLLSLK+MF+++F +K+ AQQLAMF++++LP PALLKA+   
Sbjct: 479  KQLLSSHSGNLNLQLATDSLLSLKMMFRKYFFDKLAAQQLAMFVSSDLPHPALLKAHQFC 538

Query: 2630 SQWTVLQILQMALPSQFDCLGERFFISDGEILKVDFNKDILQSMFNDIISSVLFQMDSKE 2451
              WT LQ+LQ ALP+ F+C G+++ IS  ++L VD++++ +  M ++I++S+ F+    E
Sbjct: 539  PTWTALQMLQTALPAGFNCCGDKYLISKSDLLDVDYSREFIVPMISEIVTSIFFEKSPVE 598

Query: 2450 ALNVFNSLQPLLMENLFLDGYSVCLKDFYISKSVLGNLPRSIQEVSPLLRQLRSTYNELV 2271
             L  F++LQPLLMENLF +G+SVCL+DFYI +S++ ++ ++IQ +SPLL  LR+T+NELV
Sbjct: 599  VLKFFDALQPLLMENLFTEGFSVCLEDFYIPQSMIQDIQKNIQVISPLLYHLRTTHNELV 658

Query: 2270 ELQVGNHLRNVKAPIVNFILKSSGLGNLIDSKSESSINKVVEQMGFLGLQLADRGKFYSR 2091
            +LQ+ NHLR  K P+  FILKSS LG+L+DSKS+S+INK+++Q+GFLG+Q++D+GKFYS 
Sbjct: 659  QLQLENHLRLAKLPLSRFILKSSALGDLVDSKSDSAINKIIQQIGFLGVQISDKGKFYST 718

Query: 2090 NLVEDMTSLFLHKYAVNGVECPSEAFGLIKSCFFHGLNPYEDLVHSISSREVLVRSSRGL 1911
            +L ++M SLF  KY   G + PS  +GLIKS F  GL+PYE +VHSI +REV+VRS+RGL
Sbjct: 719  SLFDEMASLFRSKYFFEGADYPSGEYGLIKSSFICGLDPYEMMVHSICTREVIVRSTRGL 778

Query: 1910 TEPGTLFKNLMTILRDVVICYDGTVRNVCSNSIIQFQYAVEAGMNPHRFYPSGEPVGALA 1731
            +EPGTLFKNLM ILRDVVICYDGTVRNVCSNSIIQF+Y  E G  P   +P+GEPVG LA
Sbjct: 779  SEPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYGSEVGGKPENLFPAGEPVGVLA 838

Query: 1730 ATAISNPAYKAVLDXXXXSNASWDLMKEILVCKINFMNDTNDRRVILYLNDCCCVKKHCK 1551
            ATA+SNPAYKAVLD    SN+SW+LMKEIL C++NF N+  DRRVILYLN C C +KHC 
Sbjct: 839  ATAMSNPAYKAVLDSSPSSNSSWELMKEILQCRVNFRNEPIDRRVILYLNRCGCGRKHCS 898

Query: 1550 ENAAFLVQNQLKKVSLKDISVDFLIEYQNSQTSQESSGINTRLVGHIHLDKKRLKDLDRS 1371
            ENAA LV+  LKKVSLKD++V F+IEY+  QT  ESS  +  LVGHIHLD+  LK+L+ S
Sbjct: 899  ENAACLVKTHLKKVSLKDLTVGFMIEYKELQTVLESSEAHAGLVGHIHLDEVHLKELNIS 958

Query: 1370 MHEVLLKCQETISFFRRKKKNKLVDYLKNIFLSVSECCYFEQSYDSEWCQIPCLQFSWRL 1191
            M +VL +CQETI+ FR+KK  K+ +  K   LSVS+ C F+        Q+PCL FS  L
Sbjct: 959  MVDVLKQCQETINSFRKKK--KVGNLFKGTVLSVSDGCSFQPQCAGGRSQMPCLMFSC-L 1015

Query: 1190 DPGGPSIETISQIMTNMICPILLDTIIKGDRRVYAANIIWISPDTNTWVKNHSSTPHGEL 1011
            D   P +E I+ ++ N ICP++LDTIIKGD R+ +ANI+WI+PDT +W++N      GEL
Sbjct: 1016 DANDPQLEKITHVLANKICPVILDTIIKGDPRISSANIVWINPDTTSWIRNSRRNQKGEL 1075

Query: 1010 ALEIILEKKFVKQHGDAWRLALDSCLPMIDLIDTRRSIPYAIRQVQEILGISCAFDQAVQ 831
            AL+I+LEK   K+ GDAWR+ LDSCLP++ LIDT+RSIPYAI+QV+E+LGISCAFDQA+Q
Sbjct: 1076 ALDIVLEKSVCKRSGDAWRIVLDSCLPVLHLIDTKRSIPYAIKQVEELLGISCAFDQAIQ 1135

Query: 830  RLSTSIRMVNKGVLKEHLVLAVNSMTCTGSLIGFNKGGYKALFRSLNVQIPFTEATLFTP 651
            RLSTS+ MV KGVLKEHL+L  +SMTC+GSLIGFN  GYKA  +SLNVQ+PFTEATLFTP
Sbjct: 1136 RLSTSVAMVAKGVLKEHLMLLADSMTCSGSLIGFNSAGYKAFSQSLNVQVPFTEATLFTP 1195

Query: 650  RKCFERAAEKCHTDTLSGIVASCSWGKQVAVGSGTHFEILW-NKNEVQSDQNGVVDIYNF 474
            R+CFERA+ KCH D LS +VASCSWGK+VAVG+G+ F+ILW  K+ V S Q G  D+Y+F
Sbjct: 1196 RRCFERASVKCHVDALSSVVASCSWGKRVAVGTGSKFDILWGTKDGVDSKQEGAADVYSF 1255

Query: 473  LQLVR--SSGGESNTSCLGEDYDEF---ESGVAEPFSPEQDFGKPTFDDA----DLQCDV 321
            L +VR  S     +++CLG D +     +       SPE +  KP F+D     D    V
Sbjct: 1256 LHMVRGPSMQATGDSTCLGIDVEHLDWEDENTELNRSPENNSEKPVFEDDVQPWDKVTSV 1315

Query: 320  EHHHTGVDW---GAVAAKPSEGDPADGWNTKGPQEMSSK-------------KSVDSWGK 189
            +       W   G  +  P     +  W+  G ++  S+              S  SW K
Sbjct: 1316 DDWDASASWEKNGKDSTTPGNNGQSTAWSNWGSKKAESQVIDSQVDNTKNSWNSSTSWDK 1375

Query: 188  -----QIEESDAKGWG-ASADRETLGGTPAERGS--VGGWNTTASQKLPSEEPADAWGKS 33
                 Q+ + ++  WG   AD +    T     S   GGW   A     + +   +W  S
Sbjct: 1376 EADANQLRDHNSPSWGNGRADDDGFHSTKDNENSSKSGGWGAAAWGSDGASQSRKSWDVS 1435


>ref|XP_007011001.1| DNA-directed RNA polymerase E subunit 1, putative isoform 3
            [Theobroma cacao] gi|508727914|gb|EOY19811.1|
            DNA-directed RNA polymerase E subunit 1, putative isoform
            3 [Theobroma cacao]
          Length = 1675

 Score = 1579 bits (4088), Expect = 0.0
 Identities = 817/1378 (59%), Positives = 1000/1378 (72%), Gaps = 12/1378 (0%)
 Frame = -2

Query: 4238 MEENVPP-LVDARITDIRFSVATDDXXXXXXXXXXXINHPSQLTNPFLGLPLESGKCESC 4062
            MEEN     VD  I  I F +AT             INH SQL+N +LGLPLE GKC +C
Sbjct: 1    MEENSSASTVDGEIVGIGFCLATPREIFTASISGFPINHVSQLSNSYLGLPLEFGKCNAC 60

Query: 4061 GTQEPGKCEGHFGYIQLPIPIYHPCHVTEXXXXXXXXXXXXXXXXXXXNVGSDK-SSKSP 3885
            GT EPGKCEGHFGYI+LPIPIYHP H++E                    + S   S +  
Sbjct: 61   GTSEPGKCEGHFGYIELPIPIYHPSHISELKRLLSLLCLKCLRMKNKFQIKSGSISDRLL 120

Query: 3884 CLYCLDIPIILINEAKTSDGVVLLELKLAGRSQLYDGFWNFLDKYGYRYGDGKR-RILLP 3708
               C + P + I E KT+DG   LELK   R       W FL+KYG+RYGD    R LLP
Sbjct: 121  ASCCENAPQVSIKEVKTTDGACSLELKQPSRQARTS--WEFLEKYGFRYGDHHNTRTLLP 178

Query: 3707 CEVHEILKRFSVETRKKLSSKGYFPQDGYILQKVPVPPNCLSIPXXXXXXXXXXXXXXXX 3528
            CEV EILKR   ETR+KLS KG+FPQ+GYIL+ +PVPPNCLS+P                
Sbjct: 179  CEVMEILKRIPAETRRKLSGKGFFPQEGYILRYLPVPPNCLSVPDISDGVSIMSSDLSTA 238

Query: 3527 MLRKVLKQAEIIKCSRSGRPNFESHKVEVNDLQSVVAQYFRARGTAKDTRAVKMRPGTTK 3348
            ML+KVLKQ EIIK SRSG PNFESH+VE NDLQS V QY + RGT K +R +  R G +K
Sbjct: 239  MLKKVLKQVEIIKSSRSGTPNFESHEVEANDLQSAVEQYLQVRGTVKASRNIDARYGISK 298

Query: 3347 EAEDSATKAWLEKMRTFFISKGSGYCSRGVITGDAYKKVNEIGLPLEVAQRITFEEKVTE 3168
            +A DS+TKAWLEKMRT FI KGSG+ SRGVITGD YKKVNEIG+P E+AQRITFEE+V  
Sbjct: 299  DASDSSTKAWLEKMRTLFIRKGSGFSSRGVITGDPYKKVNEIGIPSEIAQRITFEERVNM 358

Query: 3167 CNKDHLQELVDKKLCLTYKDGASMYSLREGSKGHTLLKVGQVVHRRIMDGDILFINRPPS 2988
             N  +LQ LVD KLCLTY+DG+S YSLREGSKGHT L+ GQVVHRRIMDGDI+FINRPP+
Sbjct: 359  HNMRYLQNLVDNKLCLTYRDGSSTYSLREGSKGHTFLRPGQVVHRRIMDGDIVFINRPPT 418

Query: 2987 THKHSLQALSVYVHEDNTVKINPLICGPLDADFDGDCVHLFYPQSLAARAEVVELFSVEQ 2808
            THKHSLQALSVYVH+D+TVKINPLICGPL ADFDGDC+HLFYPQSLAA+AEV ELFSVE+
Sbjct: 419  THKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVFELFSVEK 478

Query: 2807 QLLSSHSGCLNLQLKNDSLLSLKIMFKRFFLNKVTAQQLAMFITTNLPQPALLKANCVAS 2628
            QLLSSH+G LNLQL  DSLLSL++M K     K  AQQL+MF+++ LPQPA LK N    
Sbjct: 479  QLLSSHNGNLNLQLATDSLLSLRVMLKTLLFKKADAQQLSMFLSSALPQPAFLKGNSFGP 538

Query: 2627 QWTVLQILQMALPSQFDCLGERFFISDGEILKVDFNKDILQSMFNDIISSVLFQMDSKEA 2448
             WT LQILQ A P+  DC G+R+ IS  +IL VDF++D++QS+ N++++S+ F+   KE 
Sbjct: 539  CWTALQILQTAFPACLDCSGDRYLISKSDILTVDFSRDLMQSVINEVVTSIFFEKGPKEV 598

Query: 2447 LNVFNSLQPLLMENLFLDGYSVCLKDFYISKSVLGNLPRSIQEVSPLLRQLRSTYNELVE 2268
            LN F+SLQPLLMEN+F +G+SV L+DF +S+ V+ N+ + IQ++SPLL QLRSTYNELV 
Sbjct: 599  LNFFDSLQPLLMENVFAEGFSVSLEDFSVSREVIQNIQKDIQDISPLLYQLRSTYNELVG 658

Query: 2267 LQVGNHLRNVKAPIVNFILKSSGLGNLIDSKSESSINKVVEQMGFLGLQLADRGKFYSRN 2088
            LQ+ NH+R  KAP+ NFIL SS LG+LIDSKS+S++NKVV+Q+GFLGLQL+++GKFYS+ 
Sbjct: 659  LQMENHIRVAKAPVANFILNSSALGDLIDSKSDSTVNKVVQQIGFLGLQLSNKGKFYSKT 718

Query: 2087 LVEDMTSLFLHKYAVNGVECPSEAFGLIKSCFFHGLNPYEDLVHSISSREVLVRSSRGLT 1908
            LVED+   F   Y  +GV+ PS  FGLIKSCFFHGL+PYE +VHSIS+REV+VRSSRGL+
Sbjct: 719  LVEDVAYQFQSIYPSDGVDYPSAEFGLIKSCFFHGLDPYEGMVHSISTREVIVRSSRGLS 778

Query: 1907 EPGTLFKNLMTILRDVVICYDGTVRNVCSNSIIQFQYAVEAGMNPHRFYPSGEPVGALAA 1728
            EPGTLFKNLM ILRDVVICYDGTVRN+ SNSIIQFQY + A   P   +P+GEPVG LAA
Sbjct: 779  EPGTLFKNLMAILRDVVICYDGTVRNISSNSIIQFQYGLNARTKPQ--FPAGEPVGVLAA 836

Query: 1727 TAISNPAYKAVLDXXXXSNASWDLMKEILVCKINFMNDTNDRRVILYLNDCCCVKKHCKE 1548
            TA+SNPAYKAVLD    SN+SW+LMKEIL+CK++  ND  DRRVILYL DC C +K+C+E
Sbjct: 837  TAMSNPAYKAVLDSTPSSNSSWELMKEILLCKVSLKNDLVDRRVILYLKDCDCGRKYCQE 896

Query: 1547 NAAFLVQNQLKKVSLKDISVDFLIEYQNSQTSQESSGINTRLVGHIHLDKKRLKDLDRSM 1368
            NAA+LV+N L+KV LKD +V+ + EY+  QT  ES      LVGHI L+K  LK+L+ SM
Sbjct: 897  NAAYLVKNHLRKVKLKDTAVELIFEYKQQQTVSES---EAGLVGHILLNKAVLKELNISM 953

Query: 1367 HEVLLKCQETISFFRRKKKNKLVDYLKNIFLSVSECCYFEQSYDSEWCQIPCLQFSWRLD 1188
             EV +KCQETI  FR+KKK    D  K   L  SECC  +QS   +W  + CL F  R +
Sbjct: 954  QEVHMKCQETIISFRKKKKT--ADTFKRTDLFFSECCSIQQSCGGKWLDMSCLMFFCR-N 1010

Query: 1187 PGGPSIETISQIMTNMICPILLDTIIKGDRRVYAANIIWISPDTNTWVKNHSSTPHGELA 1008
                 ++   Q + ++I P+LL+T+IKGD R+ +ANIIW+SPDT TW+++ S T  GELA
Sbjct: 1011 TKDDHLDCTLQDLVDIIYPVLLETVIKGDPRICSANIIWVSPDTTTWIRSPSKTQKGELA 1070

Query: 1007 LEIILEKKFVKQHGDAWRLALDSCLPMIDLIDTRRSIPYAIRQVQEILGISCAFDQAVQR 828
            L+++LEK  VKQ+GDAWR  +D CLP+I+LIDT+RSIPYAI+QVQE+LGISCAF+QAVQR
Sbjct: 1071 LDVVLEKSAVKQNGDAWRTVIDCCLPVINLIDTQRSIPYAIKQVQELLGISCAFEQAVQR 1130

Query: 827  LSTSIRMVNKGVLKEHLVLAVNSMTCTGSLIGFNKGGYKALFRSLNVQIPFTEATLFTPR 648
            LSTS+ MV +GVLKEHL+L  NSMTC G+LIGFN GGYKAL RSLN+Q+PF+EATLFTPR
Sbjct: 1131 LSTSVSMVARGVLKEHLILLANSMTCAGNLIGFNSGGYKALSRSLNIQVPFSEATLFTPR 1190

Query: 647  KCFERAAEKCHTDTLSGIVASCSWGKQVAVGSGTHFEILWNKNEVQSDQNGVVDIYNFLQ 468
            KCFERAAEKCH D+LS IVASCSWGK VAVG+G+ F++LW++ EV  DQ   +D+YNFL 
Sbjct: 1191 KCFERAAEKCHVDSLSSIVASCSWGKHVAVGTGSRFDVLWDRKEVGFDQKSGIDVYNFLH 1250

Query: 467  LVRS-SGGESNTSCLGEDYDEF--ESGVAE-PFSPEQDFG--KPTFDD-ADLQCDVEHHH 309
            ++ S SG  S T+CLGE+ D+      +AE   SPE   G  KP F+D AD + D++   
Sbjct: 1251 MLSSASGPSSTTTCLGEEVDDLMDVDNMAEWSLSPEHSNGLDKPVFEDAADFENDLDFQP 1310

Query: 308  TGVDW--GAVAAKPSEGDPADGWNTKGPQEMSSKKSVDSWGKQIEESDAKGWGASADR 141
                W  G    K S  + +  WN K         ++ S  KQ   SD   WG S  +
Sbjct: 1311 AESSWEKGVSLDKVSSWNVSSAWNKKAEDGDKFAAALTSTTKQ---SDWCDWGTSKSK 1365


>ref|XP_007010999.1| DNA-directed RNA polymerase E subunit 1, putative isoform 1
            [Theobroma cacao] gi|590569189|ref|XP_007011000.1|
            DNA-directed RNA polymerase E subunit 1, putative isoform
            1 [Theobroma cacao] gi|508727912|gb|EOY19809.1|
            DNA-directed RNA polymerase E subunit 1, putative isoform
            1 [Theobroma cacao] gi|508727913|gb|EOY19810.1|
            DNA-directed RNA polymerase E subunit 1, putative isoform
            1 [Theobroma cacao]
          Length = 1788

 Score = 1579 bits (4088), Expect = 0.0
 Identities = 817/1378 (59%), Positives = 1000/1378 (72%), Gaps = 12/1378 (0%)
 Frame = -2

Query: 4238 MEENVPP-LVDARITDIRFSVATDDXXXXXXXXXXXINHPSQLTNPFLGLPLESGKCESC 4062
            MEEN     VD  I  I F +AT             INH SQL+N +LGLPLE GKC +C
Sbjct: 1    MEENSSASTVDGEIVGIGFCLATPREIFTASISGFPINHVSQLSNSYLGLPLEFGKCNAC 60

Query: 4061 GTQEPGKCEGHFGYIQLPIPIYHPCHVTEXXXXXXXXXXXXXXXXXXXNVGSDK-SSKSP 3885
            GT EPGKCEGHFGYI+LPIPIYHP H++E                    + S   S +  
Sbjct: 61   GTSEPGKCEGHFGYIELPIPIYHPSHISELKRLLSLLCLKCLRMKNKFQIKSGSISDRLL 120

Query: 3884 CLYCLDIPIILINEAKTSDGVVLLELKLAGRSQLYDGFWNFLDKYGYRYGDGKR-RILLP 3708
               C + P + I E KT+DG   LELK   R       W FL+KYG+RYGD    R LLP
Sbjct: 121  ASCCENAPQVSIKEVKTTDGACSLELKQPSRQARTS--WEFLEKYGFRYGDHHNTRTLLP 178

Query: 3707 CEVHEILKRFSVETRKKLSSKGYFPQDGYILQKVPVPPNCLSIPXXXXXXXXXXXXXXXX 3528
            CEV EILKR   ETR+KLS KG+FPQ+GYIL+ +PVPPNCLS+P                
Sbjct: 179  CEVMEILKRIPAETRRKLSGKGFFPQEGYILRYLPVPPNCLSVPDISDGVSIMSSDLSTA 238

Query: 3527 MLRKVLKQAEIIKCSRSGRPNFESHKVEVNDLQSVVAQYFRARGTAKDTRAVKMRPGTTK 3348
            ML+KVLKQ EIIK SRSG PNFESH+VE NDLQS V QY + RGT K +R +  R G +K
Sbjct: 239  MLKKVLKQVEIIKSSRSGTPNFESHEVEANDLQSAVEQYLQVRGTVKASRNIDARYGISK 298

Query: 3347 EAEDSATKAWLEKMRTFFISKGSGYCSRGVITGDAYKKVNEIGLPLEVAQRITFEEKVTE 3168
            +A DS+TKAWLEKMRT FI KGSG+ SRGVITGD YKKVNEIG+P E+AQRITFEE+V  
Sbjct: 299  DASDSSTKAWLEKMRTLFIRKGSGFSSRGVITGDPYKKVNEIGIPSEIAQRITFEERVNM 358

Query: 3167 CNKDHLQELVDKKLCLTYKDGASMYSLREGSKGHTLLKVGQVVHRRIMDGDILFINRPPS 2988
             N  +LQ LVD KLCLTY+DG+S YSLREGSKGHT L+ GQVVHRRIMDGDI+FINRPP+
Sbjct: 359  HNMRYLQNLVDNKLCLTYRDGSSTYSLREGSKGHTFLRPGQVVHRRIMDGDIVFINRPPT 418

Query: 2987 THKHSLQALSVYVHEDNTVKINPLICGPLDADFDGDCVHLFYPQSLAARAEVVELFSVEQ 2808
            THKHSLQALSVYVH+D+TVKINPLICGPL ADFDGDC+HLFYPQSLAA+AEV ELFSVE+
Sbjct: 419  THKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVFELFSVEK 478

Query: 2807 QLLSSHSGCLNLQLKNDSLLSLKIMFKRFFLNKVTAQQLAMFITTNLPQPALLKANCVAS 2628
            QLLSSH+G LNLQL  DSLLSL++M K     K  AQQL+MF+++ LPQPA LK N    
Sbjct: 479  QLLSSHNGNLNLQLATDSLLSLRVMLKTLLFKKADAQQLSMFLSSALPQPAFLKGNSFGP 538

Query: 2627 QWTVLQILQMALPSQFDCLGERFFISDGEILKVDFNKDILQSMFNDIISSVLFQMDSKEA 2448
             WT LQILQ A P+  DC G+R+ IS  +IL VDF++D++QS+ N++++S+ F+   KE 
Sbjct: 539  CWTALQILQTAFPACLDCSGDRYLISKSDILTVDFSRDLMQSVINEVVTSIFFEKGPKEV 598

Query: 2447 LNVFNSLQPLLMENLFLDGYSVCLKDFYISKSVLGNLPRSIQEVSPLLRQLRSTYNELVE 2268
            LN F+SLQPLLMEN+F +G+SV L+DF +S+ V+ N+ + IQ++SPLL QLRSTYNELV 
Sbjct: 599  LNFFDSLQPLLMENVFAEGFSVSLEDFSVSREVIQNIQKDIQDISPLLYQLRSTYNELVG 658

Query: 2267 LQVGNHLRNVKAPIVNFILKSSGLGNLIDSKSESSINKVVEQMGFLGLQLADRGKFYSRN 2088
            LQ+ NH+R  KAP+ NFIL SS LG+LIDSKS+S++NKVV+Q+GFLGLQL+++GKFYS+ 
Sbjct: 659  LQMENHIRVAKAPVANFILNSSALGDLIDSKSDSTVNKVVQQIGFLGLQLSNKGKFYSKT 718

Query: 2087 LVEDMTSLFLHKYAVNGVECPSEAFGLIKSCFFHGLNPYEDLVHSISSREVLVRSSRGLT 1908
            LVED+   F   Y  +GV+ PS  FGLIKSCFFHGL+PYE +VHSIS+REV+VRSSRGL+
Sbjct: 719  LVEDVAYQFQSIYPSDGVDYPSAEFGLIKSCFFHGLDPYEGMVHSISTREVIVRSSRGLS 778

Query: 1907 EPGTLFKNLMTILRDVVICYDGTVRNVCSNSIIQFQYAVEAGMNPHRFYPSGEPVGALAA 1728
            EPGTLFKNLM ILRDVVICYDGTVRN+ SNSIIQFQY + A   P   +P+GEPVG LAA
Sbjct: 779  EPGTLFKNLMAILRDVVICYDGTVRNISSNSIIQFQYGLNARTKPQ--FPAGEPVGVLAA 836

Query: 1727 TAISNPAYKAVLDXXXXSNASWDLMKEILVCKINFMNDTNDRRVILYLNDCCCVKKHCKE 1548
            TA+SNPAYKAVLD    SN+SW+LMKEIL+CK++  ND  DRRVILYL DC C +K+C+E
Sbjct: 837  TAMSNPAYKAVLDSTPSSNSSWELMKEILLCKVSLKNDLVDRRVILYLKDCDCGRKYCQE 896

Query: 1547 NAAFLVQNQLKKVSLKDISVDFLIEYQNSQTSQESSGINTRLVGHIHLDKKRLKDLDRSM 1368
            NAA+LV+N L+KV LKD +V+ + EY+  QT  ES      LVGHI L+K  LK+L+ SM
Sbjct: 897  NAAYLVKNHLRKVKLKDTAVELIFEYKQQQTVSES---EAGLVGHILLNKAVLKELNISM 953

Query: 1367 HEVLLKCQETISFFRRKKKNKLVDYLKNIFLSVSECCYFEQSYDSEWCQIPCLQFSWRLD 1188
             EV +KCQETI  FR+KKK    D  K   L  SECC  +QS   +W  + CL F  R +
Sbjct: 954  QEVHMKCQETIISFRKKKKT--ADTFKRTDLFFSECCSIQQSCGGKWLDMSCLMFFCR-N 1010

Query: 1187 PGGPSIETISQIMTNMICPILLDTIIKGDRRVYAANIIWISPDTNTWVKNHSSTPHGELA 1008
                 ++   Q + ++I P+LL+T+IKGD R+ +ANIIW+SPDT TW+++ S T  GELA
Sbjct: 1011 TKDDHLDCTLQDLVDIIYPVLLETVIKGDPRICSANIIWVSPDTTTWIRSPSKTQKGELA 1070

Query: 1007 LEIILEKKFVKQHGDAWRLALDSCLPMIDLIDTRRSIPYAIRQVQEILGISCAFDQAVQR 828
            L+++LEK  VKQ+GDAWR  +D CLP+I+LIDT+RSIPYAI+QVQE+LGISCAF+QAVQR
Sbjct: 1071 LDVVLEKSAVKQNGDAWRTVIDCCLPVINLIDTQRSIPYAIKQVQELLGISCAFEQAVQR 1130

Query: 827  LSTSIRMVNKGVLKEHLVLAVNSMTCTGSLIGFNKGGYKALFRSLNVQIPFTEATLFTPR 648
            LSTS+ MV +GVLKEHL+L  NSMTC G+LIGFN GGYKAL RSLN+Q+PF+EATLFTPR
Sbjct: 1131 LSTSVSMVARGVLKEHLILLANSMTCAGNLIGFNSGGYKALSRSLNIQVPFSEATLFTPR 1190

Query: 647  KCFERAAEKCHTDTLSGIVASCSWGKQVAVGSGTHFEILWNKNEVQSDQNGVVDIYNFLQ 468
            KCFERAAEKCH D+LS IVASCSWGK VAVG+G+ F++LW++ EV  DQ   +D+YNFL 
Sbjct: 1191 KCFERAAEKCHVDSLSSIVASCSWGKHVAVGTGSRFDVLWDRKEVGFDQKSGIDVYNFLH 1250

Query: 467  LVRS-SGGESNTSCLGEDYDEF--ESGVAE-PFSPEQDFG--KPTFDD-ADLQCDVEHHH 309
            ++ S SG  S T+CLGE+ D+      +AE   SPE   G  KP F+D AD + D++   
Sbjct: 1251 MLSSASGPSSTTTCLGEEVDDLMDVDNMAEWSLSPEHSNGLDKPVFEDAADFENDLDFQP 1310

Query: 308  TGVDW--GAVAAKPSEGDPADGWNTKGPQEMSSKKSVDSWGKQIEESDAKGWGASADR 141
                W  G    K S  + +  WN K         ++ S  KQ   SD   WG S  +
Sbjct: 1311 AESSWEKGVSLDKVSSWNVSSAWNKKAEDGDKFAAALTSTTKQ---SDWCDWGTSKSK 1365


>gb|KJB67890.1| hypothetical protein B456_010G216600 [Gossypium raimondii]
          Length = 1841

 Score = 1576 bits (4082), Expect = 0.0
 Identities = 811/1397 (58%), Positives = 1009/1397 (72%), Gaps = 11/1397 (0%)
 Frame = -2

Query: 4238 MEENVPPLV-DARITDIRFSVATDDXXXXXXXXXXXINHPSQLTNPFLGLPLESGKCESC 4062
            MEEN   ++ D  I  I+F +AT             INH SQL+N +LGLPLE GKC +C
Sbjct: 1    MEENSSSVILDGEIVGIKFCLATPKEILTASVSGFPINHVSQLSNSYLGLPLEFGKCSAC 60

Query: 4061 GTQEPGKCEGHFGYIQLPIPIYHPCHVTEXXXXXXXXXXXXXXXXXXXNVGSDKSSK--- 3891
            GT EPG+CEGHFGYI+LPIPIYHP H++E                    + S   ++   
Sbjct: 61   GTSEPGQCEGHFGYIELPIPIYHPSHISELKRLLSLLCLKCLKLKNKFQMKSGSVAERLL 120

Query: 3890 SPCLYCLDIPIILINEAKTSDGVVLLELKLAGRSQLYDGFWNFLDKYGYRYGDGKRRILL 3711
            S C  C + P + I E KT+DG   LELK   R    +  WNFL++YG+RYGD   R LL
Sbjct: 121  SSC--CENTPQVSIKEVKTTDGACYLELKQPSRQSKTN--WNFLERYGFRYGDHHTRTLL 176

Query: 3710 PCEVHEILKRFSVETRKKLSSKGYFPQDGYILQKVPVPPNCLSIPXXXXXXXXXXXXXXX 3531
            PCEV EILKR   +TR+KLS KG+FPQ+GYILQ +PVPPNCLS+P               
Sbjct: 177  PCEVVEILKRIPSQTRRKLSGKGFFPQEGYILQYLPVPPNCLSVPDVSDGVSV------- 229

Query: 3530 XMLRKVLKQAEIIKCSRSGRPNFESHKVEVNDLQSVVAQYFRARGTAKDTRAVKMRPGTT 3351
              +  VLKQ EIIK SRSG PNFESH+VE NDLQS V QY + RGT K +R++  R G  
Sbjct: 230  --MSSVLKQVEIIKSSRSGTPNFESHEVEANDLQSAVEQYLQVRGTVKASRSIDARYGVN 287

Query: 3350 KEAEDSATKAWLEKMRTFFISKGSGYCSRGVITGDAYKKVNEIGLPLEVAQRITFEEKVT 3171
            K+A DS+TKAWLEKMRT FI KGSG+ SR VITGD YKKVNEIG+P E+AQRITFEE+V 
Sbjct: 288  KDASDSSTKAWLEKMRTLFIRKGSGFSSRSVITGDPYKKVNEIGIPSEIAQRITFEERVN 347

Query: 3170 ECNKDHLQELVDKKLCLTYKDGASMYSLREGSKGHTLLKVGQVVHRRIMDGDILFINRPP 2991
              N  +LQ LVD KLCLTY+DG S YSLREGSKGHT L+ GQVVHRRIMDGDI+FINRPP
Sbjct: 348  MHNMRYLQNLVDNKLCLTYRDGGSTYSLREGSKGHTFLRPGQVVHRRIMDGDIVFINRPP 407

Query: 2990 STHKHSLQALSVYVHEDNTVKINPLICGPLDADFDGDCVHLFYPQSLAARAEVVELFSVE 2811
            +THKHSLQALSVYVH+D+TVKINPLICGPL ADFDGDC+HLFYPQSL+A+AEV ELFSVE
Sbjct: 408  TTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLSAKAEVYELFSVE 467

Query: 2810 QQLLSSHSGCLNLQLKNDSLLSLKIMFKRFFLNKVTAQQLAMFITTNLPQPALLKANCVA 2631
            +QLLSSHSG LNLQL  DSLLSL++M K F   K  AQQL+MF+++ LP+PA LK N VA
Sbjct: 468  KQLLSSHSGNLNLQLATDSLLSLRVMLKTFLFKKADAQQLSMFLSSALPEPAFLKCNHVA 527

Query: 2630 SQWTVLQILQMALPSQFDCLGERFFISDGEILKVDFNKDILQSMFNDIISSVLFQMDSKE 2451
              WT  QILQ A P+  DC  +R+ I   +ILKVDFNKD++QS+ N++++S+ ++   KE
Sbjct: 528  PCWTAFQILQTAFPACLDCSSDRYLIGKSDILKVDFNKDLMQSVINEVVASIFYEKGPKE 587

Query: 2450 ALNVFNSLQPLLMENLFLDGYSVCLKDFYISKSVLGNLPRSIQEVSPLLRQLRSTYNELV 2271
             LN F+SLQPLLMEN+F +G++VCL+DF +S+ V+ N+ + IQ +SPLL QLRSTYNELV
Sbjct: 588  VLNFFDSLQPLLMENIFAEGFTVCLEDFSVSREVIENIQKDIQVISPLLYQLRSTYNELV 647

Query: 2270 ELQVGNHLRNVKAPIVNFILKSSGLGNLIDSKSESSINKVVEQMGFLGLQLADRGKFYSR 2091
            ELQ+ NH+R  K PI +FILK+S LGNLIDS+S+S++NKVV+Q+GFLG+QL+D+GKFYS+
Sbjct: 648  ELQMENHIRVAKEPIADFILKTSSLGNLIDSRSDSAVNKVVQQIGFLGMQLSDKGKFYSK 707

Query: 2090 NLVEDMTSLFLHKYAVNGVECPSEAFGLIKSCFFHGLNPYEDLVHSISSREVLVRSSRGL 1911
             LVED+   F   Y  + ++ PS  FGLIKSCFF GL+PYE +VHSIS+REV+VRS+RGL
Sbjct: 708  TLVEDVAHQFQSIYPSDAIDYPSAEFGLIKSCFFRGLDPYEGIVHSISTREVMVRSTRGL 767

Query: 1910 TEPGTLFKNLMTILRDVVICYDGTVRNVCSNSIIQFQYAVEAGMNPHRFYPSGEPVGALA 1731
            +EPGTLFKNLM ILRDVVICYDGTVRNV SNSIIQFQY + A   P   +P+GEPVG LA
Sbjct: 768  SEPGTLFKNLMAILRDVVICYDGTVRNVSSNSIIQFQYGLSARTRPQ--FPAGEPVGVLA 825

Query: 1730 ATAISNPAYKAVLDXXXXSNASWDLMKEILVCKINFMNDTNDRRVILYLNDCCCVKKHCK 1551
            ATA+SNPAYKAVLD    SN+SW+LMKEIL+CK++F ND  DRRVILYL DC C +K+C+
Sbjct: 826  ATAMSNPAYKAVLDSSPSSNSSWELMKEILLCKVSFKNDPIDRRVILYLKDCDCGRKYCQ 885

Query: 1550 ENAAFLVQNQLKKVSLKDISVDFLIEYQNSQTSQESSGINTRLVGHIHLDKKRLKDLDRS 1371
            ENAA+LV+N L++V LKDI+VDF+IEYQ  Q   E   I   LVGHI L+K  LK+L  S
Sbjct: 886  ENAAYLVKNHLRRVKLKDIAVDFIIEYQQQQIVSE---IEAGLVGHILLNKDLLKELSVS 942

Query: 1370 MHEVLLKCQETISFFRRKKKNKLVDYLKNIFLSVSECCYFEQSYDSEWCQIPCLQFSWRL 1191
            + E+ +KCQETI+ FR+KKK    +  K   L VSE C  +QS   +W  +PCL F +R 
Sbjct: 943  VQEIHMKCQETINSFRKKKKT--AETFKRTDLFVSESCSIQQSCVDKWLDMPCLMFFFR- 999

Query: 1190 DPGGPSIETISQIMTNMICPILLDTIIKGDRRVYAANIIWISPDTNTWVKNHSSTPHGEL 1011
            +    ++++  QI+ ++I P+LL T+IKGD R+ +A IIW++PD  TW++N S T  GEL
Sbjct: 1000 NTNDDNLDSAIQILADIIYPVLLQTVIKGDPRICSAKIIWVNPDATTWIRNPSKTQKGEL 1059

Query: 1010 ALEIILEKKFVKQHGDAWRLALDSCLPMIDLIDTRRSIPYAIRQVQEILGISCAFDQAVQ 831
            ALE++LEK  VKQ+GDAWR  +D CLP++++IDT RSIPYAI+QV+++LGISCAF+QAVQ
Sbjct: 1060 ALEVVLEKSAVKQNGDAWRTVIDCCLPVLNIIDTHRSIPYAIKQVEQLLGISCAFEQAVQ 1119

Query: 830  RLSTSIRMVNKGVLKEHLVLAVNSMTCTGSLIGFNKGGYKALFRSLNVQIPFTEATLFTP 651
            RLSTS+ MV +GVLKEHL+L  NSMTC G+LIGFN GGYK L RSLN+Q+PFTEATLFTP
Sbjct: 1120 RLSTSVSMVTRGVLKEHLMLLANSMTCCGNLIGFNSGGYKTLSRSLNIQVPFTEATLFTP 1179

Query: 650  RKCFERAAEKCHTDTLSGIVASCSWGKQVAVGSGTHFEILWNKNEVQSDQNGVVDIYNFL 471
            RKCFERAAEKC+ D+LS IVASCSWGK+VAVG+G+ F++LWN+ E  SDQ   +D+YNFL
Sbjct: 1180 RKCFERAAEKCYDDSLSSIVASCSWGKRVAVGTGSRFDLLWNQ-ESGSDQMSGMDVYNFL 1238

Query: 470  QLVRSSGG-ESNTSCLGEDYDEFESGVAEPFSPEQDFG--KPTFDD-ADLQCDVEHHHTG 303
             +V  +GG  SNT+CLGE+ D+         SP+   G  KP F+D A+ + +++     
Sbjct: 1239 HMVSGAGGSNSNTACLGEEVDDLMDEWC--LSPDHSTGLDKPVFEDAAEFENNLDGQSAS 1296

Query: 302  VDWGAVAAKPSEGD---PADGWNTKGPQEMSSKKSVDSWGKQIEESDAKGWGASADRETL 132
             +W    +     D    A GWN           +  S  KQ E S   GWGAS      
Sbjct: 1297 ANWEKDVSLDKVSDVGWDASGWNKNAEDVDKFAAAATSSEKQNEWS---GWGASKSNSQD 1353

Query: 131  GGTPAERGSVGGWNTTA 81
             G  A    + GWN  A
Sbjct: 1354 VGWDA----LSGWNKNA 1366


>gb|KHG00588.1| DNA-directed RNA polymerase E subunit 1 -like protein [Gossypium
            arboreum]
          Length = 1996

 Score = 1576 bits (4080), Expect = 0.0
 Identities = 813/1425 (57%), Positives = 1015/1425 (71%), Gaps = 39/1425 (2%)
 Frame = -2

Query: 4238 MEENVPPLV-DARITDIRFSVATDDXXXXXXXXXXXINHPSQLTNPFLGLPLESGKCESC 4062
            MEEN   ++ D  I  I+F +A+             INH SQL+N +LGLPLE GKC +C
Sbjct: 1    MEENSSSVILDGEIVGIKFCLASPKEILTASVSGFPINHVSQLSNSYLGLPLEFGKCSAC 60

Query: 4061 GTQEPGKCEGHFGYIQLPIPIYHPCHVTEXXXXXXXXXXXXXXXXXXXNVGSDKSSK--- 3891
            GT EPG+CEGHFGYI+LPIPIYHP H++E                    + S   ++   
Sbjct: 61   GTSEPGQCEGHFGYIELPIPIYHPSHISELKRLLSLLCLKCLKLKNKFQMKSGSVAERLL 120

Query: 3890 SPCLYCLDIPIILINEAKTSDGVVLLELKLAGRSQLYDGFWNFLDKYGYRYGDGKRRILL 3711
            S C  C + P + I E KT+DG   LELK   R    +  WNFL++YG+RYGD   R LL
Sbjct: 121  SSC--CENTPQVSIKEVKTTDGACYLELKQPSRQSKTN--WNFLERYGFRYGDHHTRTLL 176

Query: 3710 PCEVHEILKRFSVETRKKLSSKGYFPQDGYILQKVPVPPNCLSIPXXXXXXXXXXXXXXX 3531
            PCEV EILKR   +TR+KLS KG+FPQ+GYILQ +PVPPNCLS+P               
Sbjct: 177  PCEVVEILKRIPAQTRRKLSGKGFFPQEGYILQYLPVPPNCLSVPDVSDGISVMSSDLST 236

Query: 3530 XMLRKVLKQAEIIKCSRSGRPNFESHKVEVNDLQSVVAQYFRARGTAKDTRAVKMRPGTT 3351
             MLRKVLKQ EIIK SRSG PNFESH+VE NDLQS V QY + RGT K +R++  R G  
Sbjct: 237  SMLRKVLKQVEIIKSSRSGNPNFESHEVEANDLQSAVEQYLQVRGTVKASRSIDARYGVN 296

Query: 3350 KEAEDSATKAWLEKMRTFFISKGSGYCSRGVITGDAYKKVNEIGLPLEVAQRITFEEKVT 3171
            K+A DS+TKAWLEKMRT FI KGSG+ SR VITGD YKKVNEIG+P E+AQRITFEE+V 
Sbjct: 297  KDASDSSTKAWLEKMRTLFIRKGSGFSSRSVITGDPYKKVNEIGIPSEIAQRITFEERVN 356

Query: 3170 ECNKDHLQELVDKKLCLTYKDGASMYSLREGSKGHTLLKVGQVVHRRIMDGDILFINRPP 2991
              N  +LQ LVD KLCLTY+DG S YSLREGSKGHT L+ GQVVHRRIMDGDI+FINRPP
Sbjct: 357  MHNMRYLQNLVDNKLCLTYRDGGSTYSLREGSKGHTFLRPGQVVHRRIMDGDIVFINRPP 416

Query: 2990 STHKHSLQALSVYVHEDNTVKINPLICGPLDADFDGDCVHLFYPQSLAARAEVVELFSVE 2811
            +THKHSLQALSVYVH+D+TVKINPLICGPL ADFDGDC+HLFYPQSL+A+AEV ELFSVE
Sbjct: 417  TTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLSAKAEVYELFSVE 476

Query: 2810 QQLLSSHSGCLNLQLKNDSLLSLKIMFKRFFLNKVTAQQLAMFITTNLPQPALLKANCVA 2631
            +QLLSSHSG LNLQL  DSLLSL++M K F   K  AQQL+MF+++ LP+PA LK N VA
Sbjct: 477  KQLLSSHSGNLNLQLATDSLLSLRVMLKTFLFKKADAQQLSMFLSSALPEPAFLKGNHVA 536

Query: 2630 SQWTVLQILQMALPSQFDCLGERFFISDGEILKVDFNKDILQSMFNDIISSVLFQMDSKE 2451
              WT  QILQ A P+  DC  +R+ I   +ILKVDFNKD++QS+ N++++S+ ++   KE
Sbjct: 537  PCWTAFQILQTAFPACLDCSCDRYLIGKSDILKVDFNKDLMQSVINEVVASIFYEKGPKE 596

Query: 2450 ALNVFNSLQPLLMENLFLDGYSVCLKDFYISKSVLGNLPRSIQEVSPLLRQLRSTYNELV 2271
             LN F+SLQPLLMEN+F +G++VCL+DF +S+ V+ N+ + IQ +SPLL QLRSTYNELV
Sbjct: 597  VLNFFDSLQPLLMENIFAEGFTVCLEDFSVSREVIENIQKDIQVISPLLYQLRSTYNELV 656

Query: 2270 ELQVGNHLRNVKAPIVNFILKSSGLGNLIDSKSESSINKVVEQMGFLGLQLADRGKFYSR 2091
            ELQ+ NH+R  KAPI +FILK+S LGNLIDS+S+S++NKVV+Q+GFLG+QL+D+GKFYS+
Sbjct: 657  ELQMENHIRVAKAPIADFILKTSSLGNLIDSRSDSAVNKVVQQIGFLGMQLSDKGKFYSK 716

Query: 2090 NLVEDMTSLFLHKYAVNGVECPSEAFGLIKSCFFHGLNPYEDLVHSISSREVLVRSSRGL 1911
             LVED+   F   Y  + ++ PS  FGLIKSCFF GL+PYE +VHSIS+REV+VRS+RGL
Sbjct: 717  TLVEDVAHQFQSIYPSDAIDYPSAEFGLIKSCFFRGLDPYEGIVHSISTREVMVRSTRGL 776

Query: 1910 TEPGTLFKNLMTILRDVVICYDGTVRNVCSNSIIQFQYAVEAGMNPHRFYPSGEPVGALA 1731
            +EPGTLFKNLM ILRDVVICYDGTVRNV SNSIIQFQY + A   P   +P+GEPVG LA
Sbjct: 777  SEPGTLFKNLMAILRDVVICYDGTVRNVSSNSIIQFQYGLSARTRPQ--FPAGEPVGVLA 834

Query: 1730 ATAISNPAYKAVLDXXXXSNASWDLMKEILVCKINFMNDTNDRRVILYLNDCCCVKKHCK 1551
            ATA+SNPAYKAVLD    SN+SW+LMKEIL+CK++F ND  DRRVILYL DC C +K+C+
Sbjct: 835  ATAMSNPAYKAVLDSSPSSNSSWELMKEILLCKVSFKNDPIDRRVILYLKDCDCGRKYCQ 894

Query: 1550 ENAAFLVQNQLKKVSLKDISVDFLIEYQNSQTSQESSGINTRLVGHIHLDKKRLKDLDRS 1371
            ENAA+LV+N L++V LKDI+VDF+IEYQ  Q   E   I   LVGHI L+K  LK+L  S
Sbjct: 895  ENAAYLVKNHLRRVKLKDIAVDFIIEYQQQQIVSE---IEAGLVGHILLNKDLLKELSVS 951

Query: 1370 MHEVLLKCQETISFFRRKKKNKLVDYLKNIFLSVSECCYFEQSYDSEWCQIPCLQFSWRL 1191
            + E+ +KCQETI+ FR+KKK    +  K   L VSE C  +QS   +W  +PCL F +R 
Sbjct: 952  VQEIHMKCQETINSFRKKKKT--AETFKRTDLFVSESCSIQQSCVDKWLDMPCLMFFFR- 1008

Query: 1190 DPGGPSIETISQIMTNMICPILLDTIIKGDRRVYAANIIWISPDTNTWVKNHSSTPHGEL 1011
            +    ++++  QI+ ++I P+LL T+IKGD R+ +A IIW++PD  TW++N S T  GEL
Sbjct: 1009 NTNDDNLDSAIQILADIIYPVLLQTVIKGDPRICSAKIIWVNPDATTWIRNPSKTQKGEL 1068

Query: 1010 ALEIILEKKFVKQHGDAWRLALDSCLPMIDLIDTRRSIPYAIRQVQEILGISCAFDQAVQ 831
            ALE++LEK  VKQ+GDAWR  +D CLP++++IDT RSIPYAI+QV+++LGISCAF+QAVQ
Sbjct: 1069 ALEVVLEKSAVKQNGDAWRTVIDCCLPVLNIIDTHRSIPYAIKQVEQLLGISCAFEQAVQ 1128

Query: 830  RLSTSIRMVNKGVLKEHLVLAVNSMTCTGSLIGFNKGGYKALFRSLNVQIPFTEATLFTP 651
            RLSTS+ MV +GVLKEHL+L  NSMTC G+LIGFN GGYKAL RSLN+Q+PFTEATLFTP
Sbjct: 1129 RLSTSVSMVTRGVLKEHLMLLANSMTCCGNLIGFNSGGYKALSRSLNIQVPFTEATLFTP 1188

Query: 650  RKCFERAAEKCHTDTLSGIVASCSWGKQVAVGSGTHFEILWNKN---------------- 519
            RKCFERAAEKC+ D+LS IVASCSWGK+VAVG+G+ F++LWN+                 
Sbjct: 1189 RKCFERAAEKCYDDSLSSIVASCSWGKRVAVGTGSRFDLLWNQELEISESTKLDQVAALT 1248

Query: 518  ----------EVQSDQNGVVDIYNFLQLVRSSGG-ESNTSCLGEDYDEFESGVAEPFSPE 372
                      +  SDQ   +D+YNFL +V  +GG  SNT+CLGE+ D+         SP+
Sbjct: 1249 RISFFSSIPFQSGSDQMSGMDVYNFLHMVSGAGGSNSNTACLGEEVDDLMDEWC--LSPD 1306

Query: 371  QDFG--KPTFDD-ADLQCDVEHHHTGVDWGAVAAKPSEGD---PADGWNTKGPQEMSSKK 210
               G  KP F+D A+ + +++      +W    +     D    A GWN           
Sbjct: 1307 HSTGLDKPVFEDAAEFENNLDGQSASANWEKDVSLDKVSDVGWDASGWNKNVEDVDKFAA 1366

Query: 209  SVDSWGKQIEESDAKGWGASADRETLGGTPAERG--SVGGWNTTA 81
            +  S  KQ E S   GWG S     +     + G  ++ GWN  A
Sbjct: 1367 AATSSEKQNEWS---GWGVSKSNSQVVSPKVDVGWDALSGWNKNA 1408


>ref|XP_011020393.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Populus
            euphratica] gi|743817375|ref|XP_011020394.1| PREDICTED:
            DNA-directed RNA polymerase V subunit 1-like [Populus
            euphratica] gi|743817379|ref|XP_011020395.1| PREDICTED:
            DNA-directed RNA polymerase V subunit 1-like [Populus
            euphratica] gi|743817383|ref|XP_011020396.1| PREDICTED:
            DNA-directed RNA polymerase V subunit 1-like [Populus
            euphratica]
          Length = 1916

 Score = 1573 bits (4073), Expect = 0.0
 Identities = 816/1398 (58%), Positives = 1005/1398 (71%), Gaps = 15/1398 (1%)
 Frame = -2

Query: 4235 EENVPPLVDARITDIRFSVATDDXXXXXXXXXXXINHPSQLTNPFLGLPLESGKCESCGT 4056
            E +   + D  IT IRF +AT             I+H SQLTNPFLGLPLE GKCESCGT
Sbjct: 3    ENSQSSIFDGEITGIRFGLATQKEICTASISDCPISHSSQLTNPFLGLPLEFGKCESCGT 62

Query: 4055 QEPGKCEGHFGYIQLPIPIYHPCHVTEXXXXXXXXXXXXXXXXXXXN-VGSDKSSKSPCL 3879
             EPGKCEGHFG+I LPIPIYHP H++E                     + S+  ++    
Sbjct: 63   SEPGKCEGHFGFIHLPIPIYHPSHISELKRMLSLICLKCLKLKRNKIQIKSNGVAERLLS 122

Query: 3878 YCLDIPIILINEAKTSDGVVLLELKLAGRSQLYDGFWNFLDKYGYRYGDGKRRILLPCEV 3699
             C +   I I E + +DG   LELKL  RS+L +G WNFL++YG+RYGD   R LLPCEV
Sbjct: 123  CCEECAQISIREVQNTDGACFLELKLPSRSRLRNGCWNFLERYGFRYGDDFTRPLLPCEV 182

Query: 3698 HEILKRFSVETRKKLSSKGYFPQDGYILQKVPVPPNCLSIPXXXXXXXXXXXXXXXXMLR 3519
             +ILKR   ETRKKLS KGYFPQDGYILQ++PVPPNCLS+P                ML+
Sbjct: 183  MQILKRIPAETRKKLSGKGYFPQDGYILQQLPVPPNCLSVPVVSDGITVMSSDLSISMLK 242

Query: 3518 KVLKQAEIIKCSRSGRPNFESHKVEVNDLQSVVAQYFRARGTAKDTRAVKMRPGTTKEAE 3339
            KVLKQAE+I+ SRSG PNF++HK E   LQS+V QY + RGT K +R V  R G  KE+ 
Sbjct: 243  KVLKQAEVIRSSRSGAPNFDAHKDEATSLQSMVDQYLQVRGTTKTSRDVDTRYGVKKESS 302

Query: 3338 DSATKAWLEKMRTFFISKGSGYCSRGVITGDAYKKVNEIGLPLEVAQRITFEEKVTECNK 3159
             S TKAWLEKMRT FI KGSG+ SR VITGDAY  VN++G+P E+AQRITFEE+V+  N 
Sbjct: 303  KSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYTLVNQVGIPYEIAQRITFEERVSMHNM 362

Query: 3158 DHLQELVDKKLCLTYKDGASMYSLREGSKGHTLLKVGQVVHRRIMDGDILFINRPPSTHK 2979
             +LQELVD KLCLTYKDG+S YSLREGSKGHT L+ GQVVHRRIMDGDI+FINRPP+THK
Sbjct: 363  RYLQELVDNKLCLTYKDGSSTYSLREGSKGHTFLRPGQVVHRRIMDGDIVFINRPPTTHK 422

Query: 2978 HSLQALSVYVHEDNTVKINPLICGPLDADFDGDCVHLFYPQSLAARAEVVELFSVEQQLL 2799
            HSLQALSVYVH+D+ VKINPLICGPL ADFDGDCVHLFYPQSLAA+AEV+ELFSVE+QLL
Sbjct: 423  HSLQALSVYVHDDHAVKINPLICGPLSADFDGDCVHLFYPQSLAAKAEVLELFSVEKQLL 482

Query: 2798 SSHSGCLNLQLKNDSLLSLKIMFKRFFLNKVTAQQLAMFITTNLPQPALLKANCVASQWT 2619
            SSHSG LNLQL  DSLLSLK+MFK  FL K  AQQLAMFI+  LPQPALLK NC    WT
Sbjct: 483  SSHSGNLNLQLTTDSLLSLKMMFKACFLGKSAAQQLAMFISPYLPQPALLKVNCFFPHWT 542

Query: 2618 VLQILQMALPSQFDCLGERFFISDGEILKVDFNKDILQSMFNDIISSVLFQMDSKEALNV 2439
              QILQMALP+ F+C GERF I +   LKVDFN+D++ S+ N+I+ S+ F+  S   L  
Sbjct: 543  AHQILQMALPACFNCSGERFLIINSNFLKVDFNRDVVASVINEILISMFFEKGSGAVLKF 602

Query: 2438 FNSLQPLLMENLFLDGYSVCLKDFYISKSVLGNLPRSIQEVSPLLRQLRSTYNELVELQV 2259
            FNSLQP+LMENLF +G+SV L+DF IS++V   +P S + +SPLL  LRST+NELVELQV
Sbjct: 603  FNSLQPMLMENLFSEGFSVSLEDFSISRAVKQRIPESFKAISPLLCNLRSTFNELVELQV 662

Query: 2258 GNHLRNVKAPIVNFILKSSGLGNLIDSKSESSINKVVEQMGFLGLQLADRGKFYSRNLVE 2079
             NH+R+VK P+  FIL SS  G LIDSKS++++ KVV+Q+GFLGLQ++DRGK YS+ LVE
Sbjct: 663  ENHIRDVKQPVREFILTSSAFGYLIDSKSDAAVTKVVQQIGFLGLQVSDRGKLYSKTLVE 722

Query: 2078 DMTSLFLHKYAVNGVECPSEAFGLIKSCFFHGLNPYEDLVHSISSREVLVRSSRGLTEPG 1899
            D+ S FL KY  N  + PS  +GLI++ FFHGL+ YE++ HSIS+REV+VRSSRGL+EPG
Sbjct: 723  DLASHFLSKYPANLFDYPSAQYGLIQNSFFHGLDAYEEMAHSISTREVIVRSSRGLSEPG 782

Query: 1898 TLFKNLMTILRDVVICYDGTVRNVCSNSIIQFQYAVEAGMNPHRFYPSGEPVGALAATAI 1719
            TLFKNLM ILRDVVICYDGTVRNV SNSIIQF Y V+ G      +P+GEPVG LAATA+
Sbjct: 783  TLFKNLMAILRDVVICYDGTVRNVSSNSIIQFDYGVKVGTESQSLFPAGEPVGVLAATAM 842

Query: 1718 SNPAYKAVLDXXXXSNASWDLMKEILVCKINFMNDTNDRRVILYLNDCCCVKKHCKENAA 1539
            SNPAYKAVLD    SN+SWD+MKEIL+CK+ F ND  DRRVILYLNDC C + +C+E AA
Sbjct: 843  SNPAYKAVLDSTPSSNSSWDMMKEILLCKVGFKNDLADRRVILYLNDCGCGRNYCQERAA 902

Query: 1538 FLVQNQLKKVSLKDISVDFLIEYQNSQTSQESSGINTRLVGHIHLDKKRLKDLDRSMHEV 1359
            +LV+N L+KVSLKDI+  F+IEY+ SQ   ES G +  LVGH+HLDK++L+DL+ +   +
Sbjct: 903  YLVKNHLEKVSLKDIAKCFMIEYK-SQQIPESFGSDAGLVGHVHLDKRKLQDLNITAQVI 961

Query: 1358 LLKCQETISFFRRKKKNKLVDYLKNIFLSVSECCYFEQSYDSEWCQIPCLQFSWRLDPGG 1179
            L KCQET++ FR+KK  K+ +  K   L VSE C F+Q  D    + PCL F W+     
Sbjct: 962  LEKCQETVNSFRKKK--KVGNLFKKTILLVSESCSFQQFID----ESPCLMFFWQ-GADD 1014

Query: 1178 PSIETISQIMTNMICPILLDTIIKGDRRVYAANIIWISPDTNTWVKNHSSTPHGELALEI 999
              +E  S I+ +MICP+LL+TIIKGD R+  ANIIW +P+T TW++N S T  GELAL+I
Sbjct: 1015 VHLERTSNILADMICPVLLETIIKGDHRISCANIIWATPETTTWIRNPSRTQKGELALDI 1074

Query: 998  ILEKKFVKQHGDAWRLALDSCLPMIDLIDTRRSIPYAIRQVQEILGISCAFDQAVQRLST 819
            +LEK  VK+ GDAWR+ LDSCLP++ LI+T RSIPYAI+QVQE+LG+SCAFD AVQRLS 
Sbjct: 1075 VLEKSVVKKSGDAWRIVLDSCLPVLHLINTTRSIPYAIKQVQELLGVSCAFDTAVQRLSK 1134

Query: 818  SIRMVNKGVLKEHLVLAVNSMTCTGSLIGFNKGGYKALFRSLNVQIPFTEATLFTPRKCF 639
            S+ MV KGVLKEHL+L  NSMTC GSLIGF  GGYK L RSL++Q+PFTEATLFTPRKCF
Sbjct: 1135 SVTMVAKGVLKEHLILLGNSMTCAGSLIGFYTGGYKTLSRSLDIQVPFTEATLFTPRKCF 1194

Query: 638  ERAAEKCHTDTLSGIVASCSWGKQVAVGSGTHFEILWNKNEVQSDQNGVVDIYNFLQLVR 459
            E+AAEKCHTD+LS IVASC+WGK V VG+G+HF++LW+  E   +  G +D Y+FL +VR
Sbjct: 1195 EKAAEKCHTDSLSSIVASCAWGKHVTVGTGSHFDVLWDTKEACLNPEGSMDAYSFLNMVR 1254

Query: 458  SSGG--ESNTSCLGEDYDEFESGVAE-PFSPEQDFG--KPTFDD-ADLQCDVEHHHTGVD 297
            S+ G  ES T+CLG + D+      +   SPE +    KPTF+D A+ Q  + +     +
Sbjct: 1255 STAGGEESVTACLGAEVDDLMLEDEDWNLSPEHNSSSDKPTFEDSAEFQDFLGNQPAESN 1314

Query: 296  WGAVAAKPSEGDPADGWNTKGPQEMSSKKSVDSWGKQIEESD---AKGWGASADRET--- 135
            W  +++       +  W+     + + K+   S G    E++   + GW  +  R T   
Sbjct: 1315 WEKISSLKDRPRSSGNWDV-DKNDGAVKEKPWSLGMNTAEANDVASSGWDTATARMTNNS 1373

Query: 134  --LGGTPAERGSVGGWNT 87
              L    A+  S  GW T
Sbjct: 1374 WNLENNVAQSNSFSGWAT 1391


>ref|XP_011655250.1| PREDICTED: DNA-directed RNA polymerase V subunit 1 [Cucumis sativus]
            gi|778702723|ref|XP_011655251.1| PREDICTED: DNA-directed
            RNA polymerase V subunit 1 [Cucumis sativus]
            gi|700195913|gb|KGN51090.1| hypothetical protein
            Csa_5G435050 [Cucumis sativus]
          Length = 1963

 Score = 1559 bits (4037), Expect = 0.0
 Identities = 805/1398 (57%), Positives = 1012/1398 (72%), Gaps = 18/1398 (1%)
 Frame = -2

Query: 4217 LVDARITDIRFSVATDDXXXXXXXXXXXINHPSQLTNPFLGLPLESGKCESCGTQEPGKC 4038
            ++DA I  IRFS+A              I H SQL+NPFLGLP+E GKCESCGT EPGKC
Sbjct: 10   ILDAEIVGIRFSLANGQEICIAAISDCPITHASQLSNPFLGLPIEFGKCESCGTSEPGKC 69

Query: 4037 EGHFGYIQLPIPIYHPCHVTEXXXXXXXXXXXXXXXXXXXN----VGSDKSSKSPCLYCL 3870
            EGHFGYI+LPIPIYHP H+TE                        +G  +   S C  C 
Sbjct: 70   EGHFGYIELPIPIYHPNHITELKKMLSLLCLKCLKMKKTKFPSKNIGFAERLLSSC--CE 127

Query: 3869 DIPIILINEAKTSDGVVLLELKLAGRSQLYDGFWNFLDKYGYRYGDGKRRILLPCEVHEI 3690
            D   + I EAK +DG   L+LK+  R+ L + FW+FL++YG+RYGD   R LLPCEV E+
Sbjct: 128  DASQVTIREAKKADGASYLQLKVPSRTSLQERFWDFLERYGFRYGDNFTRTLLPCEVKEM 187

Query: 3689 LKRFSVETRKKLSSKGYFPQDGYILQKVPVPPNCLSIPXXXXXXXXXXXXXXXXMLRKVL 3510
            LK+   ETRKKL+ +GY+PQDGYILQ +PVPPNCLS+P                ML+K+L
Sbjct: 188  LKKIPNETRKKLAGRGYYPQDGYILQYLPVPPNCLSVPEISDGVTVMSSDPAVSMLKKIL 247

Query: 3509 KQAEIIKCSRSGRPNFESHKVEVNDLQSVVAQYFRARGTAKDTRAVKMRPGTTKEAEDSA 3330
            KQ EIIK SRSG PNFESH+VE NDLQ  V QY + RGT K +R +  R G  KE  D +
Sbjct: 248  KQVEIIKGSRSGAPNFESHEVEANDLQLAVDQYLQVRGTVKASRGIDARFGVNKELNDPS 307

Query: 3329 TKAWLEKMRTFFISKGSGYCSRGVITGDAYKKVNEIGLPLEVAQRITFEEKVTECNKDHL 3150
            TKAWLEKMRT FI KGSG+ SR VITGDAYK VNEIG+P EVAQRITFEE+V+  N  +L
Sbjct: 308  TKAWLEKMRTLFIRKGSGFSSRSVITGDAYKLVNEIGVPFEVAQRITFEERVSVHNIRYL 367

Query: 3149 QELVDKKLCLTYKDGASMYSLREGSKGHTLLKVGQVVHRRIMDGDILFINRPPSTHKHSL 2970
            QELVDKKLCLTY+DG+S YSLREGS GHT LK GQ+VHRRIMDGDI+FINRPP+THKHSL
Sbjct: 368  QELVDKKLCLTYRDGSSAYSLREGSMGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSL 427

Query: 2969 QALSVYVHEDNTVKINPLICGPLDADFDGDCVHLFYPQSLAARAEVVELFSVEQQLLSSH 2790
            QAL VY+H+D+ VKINPLICGPL ADFDGDC+HLFYPQS+AA+AEV+ LFSVE+QLLSSH
Sbjct: 428  QALRVYLHDDHVVKINPLICGPLSADFDGDCIHLFYPQSIAAKAEVLGLFSVEKQLLSSH 487

Query: 2789 SGCLNLQLKNDSLLSLKIMFKRFFLNKVTAQQLAMFITTNLPQPALLKANCVASQWTVLQ 2610
            SG LNLQL NDSLLSLK+MF+++FL K  AQQLAMF+++ LP PALL     +  WT LQ
Sbjct: 488  SGNLNLQLANDSLLSLKMMFRKYFLGKAAAQQLAMFVSSYLPPPALLGVRSGSLHWTALQ 547

Query: 2609 ILQMALPSQFDCLGERFFISDGEILKVDFNKDILQSMFNDIISSVLFQMDSKEALNVFNS 2430
            ILQ  LP+ FDC G+ + I +   LK DF++D + S+ N+I++S+ FQ   +E L  F+S
Sbjct: 548  ILQTVLPASFDCHGDSYLIKNSNFLKFDFDRDAMPSLINEILTSIFFQKGPEEVLKFFDS 607

Query: 2429 LQPLLMENLFLDGYSVCLKDFYISKSVLGNLPRSIQEVSPLLRQLRSTYNELVELQVGNH 2250
            LQPLLME++F +G+SV L D+ +  + L  L ++IQ +SPLL QLRST+NELVELQ+ NH
Sbjct: 608  LQPLLMEHIFSEGFSVGLDDYSMPMAFLQALQKNIQVLSPLLYQLRSTFNELVELQLENH 667

Query: 2249 LRNVKAPIVNFILKSSGLGNLIDSKSESSINKVVEQMGFLGLQLADRGKFYSRNLVEDMT 2070
            LR+VK P  NFILK S LG L DSKSES+INKVV+Q+GFLGLQL+D+G+FYS++L+ED+ 
Sbjct: 668  LRSVKVPFTNFILKLSSLGKLFDSKSESAINKVVQQIGFLGLQLSDKGRFYSKSLIEDVA 727

Query: 2069 SLFLHKYAVNGVECPSEAFGLIKSCFFHGLNPYEDLVHSISSREVLVRSSRGLTEPGTLF 1890
            SLF ++Y+ + ++ PS  FGL+K CFFHGL+PYE++VHSIS+REV+VRSSRGLTEPGTLF
Sbjct: 728  SLFHNRYSSDKIDYPSAEFGLVKGCFFHGLDPYEEMVHSISTREVMVRSSRGLTEPGTLF 787

Query: 1889 KNLMTILRDVVICYDGTVRNVCSNSIIQFQYAVEAG-MNPHRFYPSGEPVGALAATAISN 1713
            KNLM ILRDVVICYDGTVRNVCSNSIIQ +Y ++AG M P+  +P GEPVG LAATA+S 
Sbjct: 788  KNLMAILRDVVICYDGTVRNVCSNSIIQLEYGMKAGMMQPYSLFPPGEPVGVLAATAMST 847

Query: 1712 PAYKAVLDXXXXSNASWDLMKEILVCKINFMNDTNDRRVILYLNDCCCVKKHCKENAAFL 1533
            PAYKAVLD    SN+SWD+MKEIL+CK++F N+  DRRVILYLN+C C +K+C ENAA++
Sbjct: 848  PAYKAVLDSTPSSNSSWDMMKEILLCKVSFKNEPIDRRVILYLNNCACGRKYCNENAAYV 907

Query: 1532 VQNQLKKVSLKDISVDFLIEYQNSQTSQESSGINTRLVGHIHLDKKRLKDLDRSMHEVLL 1353
            V++ LKKV+LKD ++DF+IEY    T    SG+   LVGH+HL++  LK+L+  M EVL 
Sbjct: 908  VKSHLKKVTLKDAAMDFMIEYNRQPT---PSGLGPGLVGHVHLNRMLLKELNIDMTEVLR 964

Query: 1352 KCQETISFFRRKKKNKLVDYLKNIFLSVSECCYFEQSYDSEWCQIPCLQFSWRLDPGGPS 1173
            +CQET+S F++KKK K+   L+    S+SE C F Q    E   +PCL F W        
Sbjct: 965  RCQETMSSFKKKKK-KIAHALR---FSISEHCAFHQWNGEESIDMPCLIF-WH-QTRDVH 1018

Query: 1172 IETISQIMTNMICPILLDTIIKGDRRVYAANIIWISPDTNTWVKNHSSTPHGELALEIIL 993
            +E  + I+ +++ P+L +TIIKGD R+ +A++IWISPD+ +W KN S    GELAL++ L
Sbjct: 1019 LERTAHILADIVFPLLSETIIKGDPRIKSASVIWISPDSTSWQKNPSRWQDGELALDVCL 1078

Query: 992  EKKFVKQHGDAWRLALDSCLPMIDLIDTRRSIPYAIRQVQEILGISCAFDQAVQRLSTSI 813
            EK  VKQ+GDAWR  LD CLP++ LIDTRRS+PYAI+QVQE+LGISCAFDQ +QRLS S+
Sbjct: 1079 EKSAVKQNGDAWRNVLDCCLPVLHLIDTRRSVPYAIKQVQELLGISCAFDQMIQRLSKSV 1138

Query: 812  RMVNKGVLKEHLVLAVNSMTCTGSLIGFNKGGYKALFRSLNVQIPFTEATLFTPRKCFER 633
             MV+KGVL +HL+L  NSMTCTG++IGFN GGYKAL R+LN+Q+PFTEATLFTPRKCFE+
Sbjct: 1139 SMVSKGVLGDHLILLANSMTCTGNMIGFNSGGYKALSRALNIQVPFTEATLFTPRKCFEK 1198

Query: 632  AAEKCHTDTLSGIVASCSWGKQVAVGSGTHFEILWNKNEVQSDQNGVVDIYNFLQLVRSS 453
            AAEKCH D+LS IVASCSWGK VAVG+G+ F+ILW++ E+   Q+ VVD+YNFL +VRS 
Sbjct: 1199 AAEKCHKDSLSSIVASCSWGKHVAVGTGSRFDILWDQKELGCKQDDVVDVYNFLHMVRSG 1258

Query: 452  GGESNTS-CLGEDYD----EFESG----VAEPFSPEQDFGKPTFDD-ADLQCDVEHHHTG 303
              E  TS CLGE+ +    E E G      EPFS  +   KP F+D A+ +  ++++   
Sbjct: 1259 KSEEPTSACLGEEIEDIMVEDEYGELTLSPEPFSTSE---KPVFEDSAEFEHCLDNYPGE 1315

Query: 302  VDWGAVAAKPSEGDPADGWNTKGPQEMSSKKSVDSWGKQIEESDA---KGWGASADRETL 132
              W        E  P+ G  + G  +  S ++    GK    SD     GWG  A+ +  
Sbjct: 1316 SKW--------EKAPSLGAVSTGGGQWESNEN----GKATNSSDGNDWSGWGRKAEPDVT 1363

Query: 131  GGTPAERGSVGGWNTTAS 78
                 E  S   W+TT+S
Sbjct: 1364 VTNAQENTSNSAWDTTSS 1381


>ref|XP_008465860.1| PREDICTED: DNA-directed RNA polymerase V subunit 1 [Cucumis melo]
            gi|659072503|ref|XP_008465867.1| PREDICTED: DNA-directed
            RNA polymerase V subunit 1 [Cucumis melo]
            gi|659072505|ref|XP_008465874.1| PREDICTED: DNA-directed
            RNA polymerase V subunit 1 [Cucumis melo]
          Length = 1964

 Score = 1558 bits (4034), Expect = 0.0
 Identities = 799/1395 (57%), Positives = 1011/1395 (72%), Gaps = 15/1395 (1%)
 Frame = -2

Query: 4217 LVDARITDIRFSVATDDXXXXXXXXXXXINHPSQLTNPFLGLPLESGKCESCGTQEPGKC 4038
            ++DA I  IRFS+A              I H SQL+NPFLGLP+E GKCESCGT EPGKC
Sbjct: 10   ILDAEIVGIRFSLANGQEICIAAISDCPITHASQLSNPFLGLPIEFGKCESCGTSEPGKC 69

Query: 4037 EGHFGYIQLPIPIYHPCHVTEXXXXXXXXXXXXXXXXXXXN----VGSDKSSKSPCLYCL 3870
            EGHFGYI+LPIPIYHP H+TE                        +G  +   S C  C 
Sbjct: 70   EGHFGYIELPIPIYHPNHITELRKMLSLLCLKCLKMKKTKFPSKNIGFAERLLSSC--CE 127

Query: 3869 DIPIILINEAKTSDGVVLLELKLAGRSQLYDGFWNFLDKYGYRYGDGKRRILLPCEVHEI 3690
            D   + I EAK +DG   L+LK+  R+ L + FW+FL++YG+RYGD   R LLPCEV E+
Sbjct: 128  DASQVTIREAKKADGASYLQLKVPSRTSLQERFWDFLERYGFRYGDNFTRTLLPCEVKEM 187

Query: 3689 LKRFSVETRKKLSSKGYFPQDGYILQKVPVPPNCLSIPXXXXXXXXXXXXXXXXMLRKVL 3510
            LK+   ETRKKL+ +GY+PQDGYILQ +PVPPNCLS+P                ML+K+L
Sbjct: 188  LKKIPNETRKKLAGRGYYPQDGYILQYLPVPPNCLSVPEISDGVTVMSSDPAVSMLKKIL 247

Query: 3509 KQAEIIKCSRSGRPNFESHKVEVNDLQSVVAQYFRARGTAKDTRAVKMRPGTTKEAEDSA 3330
            KQ EIIK SRSG PNFESH+VE NDLQ  V QY + RGT K +R +  R G  KE  D +
Sbjct: 248  KQVEIIKGSRSGAPNFESHEVEANDLQLAVDQYLQVRGTVKASRGIDARFGVNKELNDPS 307

Query: 3329 TKAWLEKMRTFFISKGSGYCSRGVITGDAYKKVNEIGLPLEVAQRITFEEKVTECNKDHL 3150
            TKAWLEKMRT FI KGSG+ SR VITGDAYK VNEIG+P EVAQRITFEE+V+  N  +L
Sbjct: 308  TKAWLEKMRTLFIRKGSGFSSRSVITGDAYKLVNEIGVPFEVAQRITFEERVSVHNIRYL 367

Query: 3149 QELVDKKLCLTYKDGASMYSLREGSKGHTLLKVGQVVHRRIMDGDILFINRPPSTHKHSL 2970
            QELVDKKLCLTY+DG+S YSLREGS GHT LK GQ+VHRRIMDGDI+FINRPP+THKHSL
Sbjct: 368  QELVDKKLCLTYRDGSSAYSLREGSMGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSL 427

Query: 2969 QALSVYVHEDNTVKINPLICGPLDADFDGDCVHLFYPQSLAARAEVVELFSVEQQLLSSH 2790
            QAL VY+H+D+ VKINPLICG L ADFDGDC+HLFYPQS+AA+AEV+ LFSVE+QLLSSH
Sbjct: 428  QALRVYLHDDHVVKINPLICGSLSADFDGDCIHLFYPQSIAAKAEVLGLFSVEKQLLSSH 487

Query: 2789 SGCLNLQLKNDSLLSLKIMFKRFFLNKVTAQQLAMFITTNLPQPALLKANCVASQWTVLQ 2610
            SG LNLQL NDSLLSLK+MF+++FL K  AQQLAMF+++ LP PALL     +  WT LQ
Sbjct: 488  SGNLNLQLANDSLLSLKMMFRKYFLGKAAAQQLAMFVSSYLPPPALLGVRSGSLHWTALQ 547

Query: 2609 ILQMALPSQFDCLGERFFISDGEILKVDFNKDILQSMFNDIISSVLFQMDSKEALNVFNS 2430
            ILQ  LP+ FDC G+ + I +   LK DF+KD + S+ N+I++S+ FQ   +E L  F+S
Sbjct: 548  ILQTVLPACFDCHGDSYLIKNSNFLKFDFDKDAMPSLINEILTSIFFQKGPEEVLKFFDS 607

Query: 2429 LQPLLMENLFLDGYSVCLKDFYISKSVLGNLPRSIQEVSPLLRQLRSTYNELVELQVGNH 2250
            LQPLLME++F +G+SV L D+ +  + L  L ++IQ +SPLL QLRST+NELVELQ+ NH
Sbjct: 608  LQPLLMEHIFSEGFSVGLDDYSMPMAFLQALQKNIQVLSPLLYQLRSTFNELVELQLENH 667

Query: 2249 LRNVKAPIVNFILKSSGLGNLIDSKSESSINKVVEQMGFLGLQLADRGKFYSRNLVEDMT 2070
            LR+VK P  NFILK S LG L DSKSES+INKVV+Q+GFLGLQL+D+G+FYS++L+ED+ 
Sbjct: 668  LRSVKVPFTNFILKLSSLGKLFDSKSESAINKVVQQIGFLGLQLSDKGRFYSKSLIEDVA 727

Query: 2069 SLFLHKYAVNGVECPSEAFGLIKSCFFHGLNPYEDLVHSISSREVLVRSSRGLTEPGTLF 1890
            SLF ++Y+ + ++ PS  FGL+K CFFHGL+PYE++VHSIS+REV+VRSSRGLTEPGTLF
Sbjct: 728  SLFHNRYSSDKIDYPSAEFGLVKGCFFHGLDPYEEMVHSISTREVMVRSSRGLTEPGTLF 787

Query: 1889 KNLMTILRDVVICYDGTVRNVCSNSIIQFQYAVEAG-MNPHRFYPSGEPVGALAATAISN 1713
            KNLM ILRDVVICYDGTVRNVCSNSIIQ +Y ++AG M P+  +P GEPVG LAATA+S 
Sbjct: 788  KNLMAILRDVVICYDGTVRNVCSNSIIQLEYGMKAGMMQPYSLFPPGEPVGVLAATAMST 847

Query: 1712 PAYKAVLDXXXXSNASWDLMKEILVCKINFMNDTNDRRVILYLNDCCCVKKHCKENAAFL 1533
            PAYKAVLD    SN+SWD+MKEIL+CK++F N+  DRRVILYLN+C C +K+C ENAA++
Sbjct: 848  PAYKAVLDSTPSSNSSWDMMKEILLCKVSFKNEPIDRRVILYLNNCACGRKYCNENAAYV 907

Query: 1532 VQNQLKKVSLKDISVDFLIEYQNSQTSQESSGINTRLVGHIHLDKKRLKDLDRSMHEVLL 1353
            V++ LKKV+LKD++VDF+IEY    T    SG+   LVGH+HL++  LK+L+ +M EVL 
Sbjct: 908  VKSHLKKVTLKDVAVDFMIEYNRQPT---PSGLGPGLVGHVHLNRMLLKELNINMTEVLR 964

Query: 1352 KCQETISFFRRKKKNKLVDYLKNIFLSVSECCYFEQSYDSEWCQIPCLQFSWRLDPGGPS 1173
            +CQET+S F++KKK K+   L+    ++SE C F Q    E   +PCL F W  +     
Sbjct: 965  RCQETMSSFKKKKK-KVAHALR---FAISEHCAFHQWNGVESIDMPCLIF-WH-ETRDVH 1018

Query: 1172 IETISQIMTNMICPILLDTIIKGDRRVYAANIIWISPDTNTWVKNHSSTPHGELALEIIL 993
            +E  + I+ +++ P+L +TIIKGD R+ +A++IWISPD+ +W KN S    GELAL++ L
Sbjct: 1019 LERTAHILADIVFPLLSETIIKGDPRIKSASVIWISPDSTSWQKNPSRWQDGELALDVCL 1078

Query: 992  EKKFVKQHGDAWRLALDSCLPMIDLIDTRRSIPYAIRQVQEILGISCAFDQAVQRLSTSI 813
            EK  +KQ+GDAWR  LD CLP++ LIDTRRS+PYAI+QVQE+LGISCAFDQ +QRLS S+
Sbjct: 1079 EKSALKQNGDAWRNVLDCCLPVLHLIDTRRSVPYAIKQVQELLGISCAFDQMIQRLSKSV 1138

Query: 812  RMVNKGVLKEHLVLAVNSMTCTGSLIGFNKGGYKALFRSLNVQIPFTEATLFTPRKCFER 633
             MV+KGVL +HL+L  NSMTCTG++IGFN GGYKAL R+LN+Q+PFTEATLFTPRKCFE+
Sbjct: 1139 SMVSKGVLGDHLILLANSMTCTGNMIGFNSGGYKALSRALNIQVPFTEATLFTPRKCFEK 1198

Query: 632  AAEKCHTDTLSGIVASCSWGKQVAVGSGTHFEILWNKNEVQSDQNGVVDIYNFLQLVRSS 453
            AAEKCH D+LS IVASCSWGK VAVG+G+ F+ILW++ E+   Q+ VVD+YNFL +VRS 
Sbjct: 1199 AAEKCHKDSLSSIVASCSWGKHVAVGTGSRFDILWDQKELGCKQDDVVDVYNFLHMVRSG 1258

Query: 452  GGESNTS-CLGEDYD----EFESG----VAEPFSPEQDFGKPTFDD-ADLQCDVEHHHTG 303
              E  TS CLGE+ +    E E G      EPFS  +   KP F+D A+ +  +++    
Sbjct: 1259 KSEEPTSACLGEEVEDIMVEDEYGELTLSPEPFSTSE---KPVFEDSAEFEHCLDNDPGE 1315

Query: 302  VDWGAVAAKPSEGDPADGWNTKGPQEMSSKKSVDSWGKQIEESDAKGWGASADRETLGGT 123
              W    +  +       W + G  + +         K  +++D  GWG  A+ +     
Sbjct: 1316 SKWEKAPSLGAVSTGGGQWESNGNGKAT---------KSSDDNDWSGWGRKAEPDVTVTN 1366

Query: 122  PAERGSVGGWNTTAS 78
              E  S   W+TT+S
Sbjct: 1367 AQENTSNSAWDTTSS 1381


>ref|XP_012574253.1| PREDICTED: DNA-directed RNA polymerase V subunit 1 isoform X3 [Cicer
            arietinum]
          Length = 2210

 Score = 1549 bits (4011), Expect = 0.0
 Identities = 788/1416 (55%), Positives = 1016/1416 (71%), Gaps = 16/1416 (1%)
 Frame = -2

Query: 4238 MEEN-VPPLVDARITDIRFSVATDDXXXXXXXXXXXINHPSQLTNPFLGLPLESGKCESC 4062
            ME+N    ++DA++  IRFS+AT             I+H SQL NPFLGLPLE G+CESC
Sbjct: 1    MEDNPTSSVLDAKVIGIRFSMATRHEISTASISDSTISHASQLANPFLGLPLEFGRCESC 60

Query: 4061 GTQEPGKCEGHFGYIQLPIPIYHPCHVTEXXXXXXXXXXXXXXXXXXXNVGSD----KSS 3894
            GT E GKCEGHFGYI+LP+PIYHP HVTE                      S     +S 
Sbjct: 61   GTSEAGKCEGHFGYIELPVPIYHPSHVTELKKILSLVCLNCLKLKKTKFPSSSSGLAQSL 120

Query: 3893 KSPCLYCLDIPIILINEAKTSDGVVLLELKLAGRSQLYDGFWNFLDKYGYRYGDGKRRIL 3714
             SPC   ++   + I E KT+DG   L LK++ +S+++DGFW FL+KYGYRYG    R L
Sbjct: 121  LSPCCEDVNAAQVSIREVKTADGACYLALKVS-KSKMHDGFWGFLEKYGYRYGGDHTRAL 179

Query: 3713 LPCEVHEILKRFSVETRKKLSSKGYFPQDGYILQKVPVPPNCLSIPXXXXXXXXXXXXXX 3534
            LPCEV EI+KRF  ET +KL+ KGYFPQDGY+L+ +PVPPNCLS+P              
Sbjct: 180  LPCEVMEIIKRFPQETNRKLAIKGYFPQDGYVLKYLPVPPNCLSVPVVSDGVSVMSSDPA 239

Query: 3533 XXMLRKVLKQAEIIKCSRSGRPNFESHKVEVNDLQSVVAQYFRARGTAKDTRAVKMRPGT 3354
              +LRK+L++ EII+ SRSG PNFESH+VE NDLQSVV QY + RGT+K TR ++ R G 
Sbjct: 240  MTILRKLLRKVEIIRSSRSGEPNFESHQVEANDLQSVVDQYLQVRGTSKATRDIETRYGV 299

Query: 3353 TKEAEDSATKAWLEKMRTFFISKGSGYCSRGVITGDAYKKVNEIGLPLEVAQRITFEEKV 3174
             KE  DS+TKAWLEKMRT FI KGSG+ SR VITGD YKK+NE+G+PLEVAQRITFEE+V
Sbjct: 300  NKELNDSSTKAWLEKMRTLFIRKGSGFSSRNVITGDGYKKINEVGIPLEVAQRITFEERV 359

Query: 3173 TECNKDHLQELVDKKLCLTYKDGASMYSLREGSKGHTLLKVGQVVHRRIMDGDILFINRP 2994
            +  N  +LQ+LVD+ +CLTYK+G S YSLREGSKGHT LK GQ+VHRRIMDGD++FINRP
Sbjct: 360  SIHNIRYLQKLVDENMCLTYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDVVFINRP 419

Query: 2993 PSTHKHSLQALSVYVHEDNTVKINPLICGPLDADFDGDCVHLFYPQSLAARAEVVELFSV 2814
            P+THKHSLQAL VY+H+D+TVKINPLICGPL ADFDGDCVHLFYPQSLAA+AEV+ELFSV
Sbjct: 420  PTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVLELFSV 479

Query: 2813 EQQLLSSHSGCLNLQLKNDSLLSLKIMFKRFFLNKVTAQQLAMFITTNLPQPALLKANCV 2634
            E+QLLSSHSG LNLQL  DSLLSLK++ K  FL++  A Q+AMF++  LP PAL KA   
Sbjct: 480  EKQLLSSHSGNLNLQLSTDSLLSLKMLVKSCFLDRAAANQMAMFLSLPLPMPALFKAGSG 539

Query: 2633 ASQWTVLQILQMALPSQFDCLGERFFISDGEILKVDFNKDILQSMFNDIISSVLFQMDSK 2454
             S WT +Q+LQ ALPS FDC G R+ I   EIL+ DF +D+L S+ N++ +S+ F    K
Sbjct: 540  DSYWTSVQMLQCALPSSFDCTGGRYLIRQREILEFDFTRDLLPSIINEVAASIFFSQGPK 599

Query: 2453 EALNVFNSLQPLLMENLFLDGYSVCLKDFYISKSVLGNLPRSIQEVSPLLRQLRSTYNEL 2274
            EALN F+ LQP LMEN+F  GYSV L+DF IS++V   + RSI ++SPLL QLR  Y EL
Sbjct: 600  EALNFFDVLQPFLMENIFAHGYSVGLQDFSISRAVKRVINRSIGKISPLLHQLRVVYKEL 659

Query: 2273 VELQVGNHLRNVKAPIVNFILKSSGLGNLIDSKSESSINKVVEQMGFLGLQLADRGKFYS 2094
            V  Q+  H+++++ P++NF LKS+ LG+LIDSKS+S+++KVV+Q+GFLG QL +RGKFYS
Sbjct: 660  VAQQLEKHMQDIELPVINFALKSTKLGDLIDSKSKSALDKVVQQIGFLGQQLFERGKFYS 719

Query: 2093 RNLVEDMTSLFLHKYAVNGVECPSEAFGLIKSCFFHGLNPYEDLVHSISSREVLVRSSRG 1914
            + LVED+ S F  K   +G   PS  FGL+K CFFHGL+PYE+LVHSI++RE++VRSSRG
Sbjct: 720  KGLVEDVGSHFHVKCFYDGDGYPSAEFGLLKGCFFHGLDPYEELVHSIATREIIVRSSRG 779

Query: 1913 LTEPGTLFKNLMTILRDVVICYDGTVRNVCSNSIIQFQYAVEAGMNPHRFYPSGEPVGAL 1734
            L+EPGTLFKNLM ILRDVVICYDGTVRNVCSNSIIQF+Y +++G      +P+GEPVG L
Sbjct: 780  LSEPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYGIQSGDKSQPLFPAGEPVGVL 839

Query: 1733 AATAISNPAYKAVLDXXXXSNASWDLMKEILVCKINFMNDTNDRRVILYLNDCCCVKKHC 1554
            AAT++SNPAYKAVLD    SN+SW+ MKEIL+CK+NF N+ NDRRVILYLNDC C + +C
Sbjct: 840  AATSMSNPAYKAVLDASPSSNSSWEFMKEILLCKVNFRNEPNDRRVILYLNDCDCGRSYC 899

Query: 1553 KENAAFLVQNQLKKVSLKDISVDFLIEYQNSQTSQESSGINTRLVGHIHLDKKRLKDLDR 1374
            +ENAA+LV+NQL+KVSLKD ++DF +EYQ  +   + S  +  LVGHIHL++  L+ L  
Sbjct: 900  RENAAYLVKNQLRKVSLKDAALDFTVEYQQQRRRNDGSE-DAGLVGHIHLNEAMLEKLKI 958

Query: 1373 SMHEVLLKCQETISFFRRKKKNKLVDYLKNIFLSVSECCYFEQSYDSEWCQIPCLQFSWR 1194
            +M EV  KCQE ++ F RKK  K+  + +   L  SE C    S        PC+   W 
Sbjct: 959  NMSEVYQKCQERLNSFSRKK--KVFHFFRKTELFFSESCSSLNS------SAPCVTILW- 1009

Query: 1193 LDPGGPSIETISQIMTNMICPILLDTIIKGDRRVYAANIIWISPDTNTWVKNHSSTPHGE 1014
              P G  ++  ++++ +MICP+LLDTII+GD R+ +ANIIW++P TNTWV+N S + +GE
Sbjct: 1010 --PDGDDLDQTTKVLADMICPVLLDTIIQGDPRISSANIIWVNPGTNTWVRNPSKSSNGE 1067

Query: 1013 LALEIILEKKFVKQHGDAWRLALDSCLPMIDLIDTRRSIPYAIRQVQEILGISCAFDQAV 834
            LAL++ILEK+ VKQ GDAWR+ LDSCLP++ LIDTRRS PYAI+Q+QE+LGISC FDQA+
Sbjct: 1068 LALDVILEKEAVKQSGDAWRIILDSCLPVLHLIDTRRSTPYAIKQIQELLGISCTFDQAI 1127

Query: 833  QRLSTSIRMVNKGVLKEHLVLAVNSMTCTGSLIGFNKGGYKALFRSLNVQIPFTEATLFT 654
            QRL+ S+RMV KGVL+EHL+L  +SMTC G+L+GFN GGYK L R LN+Q+PFT+ATLFT
Sbjct: 1128 QRLAASVRMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKTLARQLNIQVPFTDATLFT 1187

Query: 653  PRKCFERAAEKCHTDTLSGIVASCSWGKQVAVGSGTHFEILWNKNEVQSDQNGVVDIYNF 474
            PRKCFERAAEK H D+LS IVASCSWGK VAVG+G+ F+I+W+  EV+S++   +D+YNF
Sbjct: 1188 PRKCFERAAEKRHADSLSSIVASCSWGKHVAVGTGSRFDIVWDPKEVKSNEIEGMDVYNF 1247

Query: 473  LQLVR--SSGGESNTSCLGEDYDEFESGVAEPFSPEQDFGKPTFDDADLQCDVEHHHTGV 300
            L +V+  ++G E N +CLGED D+                    DD ++   +   HT  
Sbjct: 1248 LNMVKGLANGDEENNACLGEDIDDL------------------LDDDNMDWGMSPEHTS- 1288

Query: 299  DWGAVAAKPSE---GDPADGWNTKGPQEMSSKKSVDSWGK-----QIEESDAKGWGASAD 144
             + AV  +  E   G  ++GW++   Q  ++      WG+     Q++ ++   WG+ + 
Sbjct: 1289 GFDAVFDESFELLNGSTSNGWDSNKDQNKTTTNDWSGWGQNKSEIQVDVAETDQWGSGST 1348

Query: 143  RETLGG-TPAERGSVGGWNTTASQKLPSEEPADAWG 39
            ++     T  +    G W T  +Q   S++P  +WG
Sbjct: 1349 QKWKADITKEDSSKSGAWETGTNQN--SDQP--SWG 1380


>ref|XP_012574252.1| PREDICTED: DNA-directed RNA polymerase V subunit 1 isoform X2 [Cicer
            arietinum]
          Length = 2253

 Score = 1549 bits (4011), Expect = 0.0
 Identities = 788/1416 (55%), Positives = 1016/1416 (71%), Gaps = 16/1416 (1%)
 Frame = -2

Query: 4238 MEEN-VPPLVDARITDIRFSVATDDXXXXXXXXXXXINHPSQLTNPFLGLPLESGKCESC 4062
            ME+N    ++DA++  IRFS+AT             I+H SQL NPFLGLPLE G+CESC
Sbjct: 1    MEDNPTSSVLDAKVIGIRFSMATRHEISTASISDSTISHASQLANPFLGLPLEFGRCESC 60

Query: 4061 GTQEPGKCEGHFGYIQLPIPIYHPCHVTEXXXXXXXXXXXXXXXXXXXNVGSD----KSS 3894
            GT E GKCEGHFGYI+LP+PIYHP HVTE                      S     +S 
Sbjct: 61   GTSEAGKCEGHFGYIELPVPIYHPSHVTELKKILSLVCLNCLKLKKTKFPSSSSGLAQSL 120

Query: 3893 KSPCLYCLDIPIILINEAKTSDGVVLLELKLAGRSQLYDGFWNFLDKYGYRYGDGKRRIL 3714
             SPC   ++   + I E KT+DG   L LK++ +S+++DGFW FL+KYGYRYG    R L
Sbjct: 121  LSPCCEDVNAAQVSIREVKTADGACYLALKVS-KSKMHDGFWGFLEKYGYRYGGDHTRAL 179

Query: 3713 LPCEVHEILKRFSVETRKKLSSKGYFPQDGYILQKVPVPPNCLSIPXXXXXXXXXXXXXX 3534
            LPCEV EI+KRF  ET +KL+ KGYFPQDGY+L+ +PVPPNCLS+P              
Sbjct: 180  LPCEVMEIIKRFPQETNRKLAIKGYFPQDGYVLKYLPVPPNCLSVPVVSDGVSVMSSDPA 239

Query: 3533 XXMLRKVLKQAEIIKCSRSGRPNFESHKVEVNDLQSVVAQYFRARGTAKDTRAVKMRPGT 3354
              +LRK+L++ EII+ SRSG PNFESH+VE NDLQSVV QY + RGT+K TR ++ R G 
Sbjct: 240  MTILRKLLRKVEIIRSSRSGEPNFESHQVEANDLQSVVDQYLQVRGTSKATRDIETRYGV 299

Query: 3353 TKEAEDSATKAWLEKMRTFFISKGSGYCSRGVITGDAYKKVNEIGLPLEVAQRITFEEKV 3174
             KE  DS+TKAWLEKMRT FI KGSG+ SR VITGD YKK+NE+G+PLEVAQRITFEE+V
Sbjct: 300  NKELNDSSTKAWLEKMRTLFIRKGSGFSSRNVITGDGYKKINEVGIPLEVAQRITFEERV 359

Query: 3173 TECNKDHLQELVDKKLCLTYKDGASMYSLREGSKGHTLLKVGQVVHRRIMDGDILFINRP 2994
            +  N  +LQ+LVD+ +CLTYK+G S YSLREGSKGHT LK GQ+VHRRIMDGD++FINRP
Sbjct: 360  SIHNIRYLQKLVDENMCLTYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDVVFINRP 419

Query: 2993 PSTHKHSLQALSVYVHEDNTVKINPLICGPLDADFDGDCVHLFYPQSLAARAEVVELFSV 2814
            P+THKHSLQAL VY+H+D+TVKINPLICGPL ADFDGDCVHLFYPQSLAA+AEV+ELFSV
Sbjct: 420  PTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVLELFSV 479

Query: 2813 EQQLLSSHSGCLNLQLKNDSLLSLKIMFKRFFLNKVTAQQLAMFITTNLPQPALLKANCV 2634
            E+QLLSSHSG LNLQL  DSLLSLK++ K  FL++  A Q+AMF++  LP PAL KA   
Sbjct: 480  EKQLLSSHSGNLNLQLSTDSLLSLKMLVKSCFLDRAAANQMAMFLSLPLPMPALFKAGSG 539

Query: 2633 ASQWTVLQILQMALPSQFDCLGERFFISDGEILKVDFNKDILQSMFNDIISSVLFQMDSK 2454
             S WT +Q+LQ ALPS FDC G R+ I   EIL+ DF +D+L S+ N++ +S+ F    K
Sbjct: 540  DSYWTSVQMLQCALPSSFDCTGGRYLIRQREILEFDFTRDLLPSIINEVAASIFFSQGPK 599

Query: 2453 EALNVFNSLQPLLMENLFLDGYSVCLKDFYISKSVLGNLPRSIQEVSPLLRQLRSTYNEL 2274
            EALN F+ LQP LMEN+F  GYSV L+DF IS++V   + RSI ++SPLL QLR  Y EL
Sbjct: 600  EALNFFDVLQPFLMENIFAHGYSVGLQDFSISRAVKRVINRSIGKISPLLHQLRVVYKEL 659

Query: 2273 VELQVGNHLRNVKAPIVNFILKSSGLGNLIDSKSESSINKVVEQMGFLGLQLADRGKFYS 2094
            V  Q+  H+++++ P++NF LKS+ LG+LIDSKS+S+++KVV+Q+GFLG QL +RGKFYS
Sbjct: 660  VAQQLEKHMQDIELPVINFALKSTKLGDLIDSKSKSALDKVVQQIGFLGQQLFERGKFYS 719

Query: 2093 RNLVEDMTSLFLHKYAVNGVECPSEAFGLIKSCFFHGLNPYEDLVHSISSREVLVRSSRG 1914
            + LVED+ S F  K   +G   PS  FGL+K CFFHGL+PYE+LVHSI++RE++VRSSRG
Sbjct: 720  KGLVEDVGSHFHVKCFYDGDGYPSAEFGLLKGCFFHGLDPYEELVHSIATREIIVRSSRG 779

Query: 1913 LTEPGTLFKNLMTILRDVVICYDGTVRNVCSNSIIQFQYAVEAGMNPHRFYPSGEPVGAL 1734
            L+EPGTLFKNLM ILRDVVICYDGTVRNVCSNSIIQF+Y +++G      +P+GEPVG L
Sbjct: 780  LSEPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYGIQSGDKSQPLFPAGEPVGVL 839

Query: 1733 AATAISNPAYKAVLDXXXXSNASWDLMKEILVCKINFMNDTNDRRVILYLNDCCCVKKHC 1554
            AAT++SNPAYKAVLD    SN+SW+ MKEIL+CK+NF N+ NDRRVILYLNDC C + +C
Sbjct: 840  AATSMSNPAYKAVLDASPSSNSSWEFMKEILLCKVNFRNEPNDRRVILYLNDCDCGRSYC 899

Query: 1553 KENAAFLVQNQLKKVSLKDISVDFLIEYQNSQTSQESSGINTRLVGHIHLDKKRLKDLDR 1374
            +ENAA+LV+NQL+KVSLKD ++DF +EYQ  +   + S  +  LVGHIHL++  L+ L  
Sbjct: 900  RENAAYLVKNQLRKVSLKDAALDFTVEYQQQRRRNDGSE-DAGLVGHIHLNEAMLEKLKI 958

Query: 1373 SMHEVLLKCQETISFFRRKKKNKLVDYLKNIFLSVSECCYFEQSYDSEWCQIPCLQFSWR 1194
            +M EV  KCQE ++ F RKK  K+  + +   L  SE C    S        PC+   W 
Sbjct: 959  NMSEVYQKCQERLNSFSRKK--KVFHFFRKTELFFSESCSSLNS------SAPCVTILW- 1009

Query: 1193 LDPGGPSIETISQIMTNMICPILLDTIIKGDRRVYAANIIWISPDTNTWVKNHSSTPHGE 1014
              P G  ++  ++++ +MICP+LLDTII+GD R+ +ANIIW++P TNTWV+N S + +GE
Sbjct: 1010 --PDGDDLDQTTKVLADMICPVLLDTIIQGDPRISSANIIWVNPGTNTWVRNPSKSSNGE 1067

Query: 1013 LALEIILEKKFVKQHGDAWRLALDSCLPMIDLIDTRRSIPYAIRQVQEILGISCAFDQAV 834
            LAL++ILEK+ VKQ GDAWR+ LDSCLP++ LIDTRRS PYAI+Q+QE+LGISC FDQA+
Sbjct: 1068 LALDVILEKEAVKQSGDAWRIILDSCLPVLHLIDTRRSTPYAIKQIQELLGISCTFDQAI 1127

Query: 833  QRLSTSIRMVNKGVLKEHLVLAVNSMTCTGSLIGFNKGGYKALFRSLNVQIPFTEATLFT 654
            QRL+ S+RMV KGVL+EHL+L  +SMTC G+L+GFN GGYK L R LN+Q+PFT+ATLFT
Sbjct: 1128 QRLAASVRMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKTLARQLNIQVPFTDATLFT 1187

Query: 653  PRKCFERAAEKCHTDTLSGIVASCSWGKQVAVGSGTHFEILWNKNEVQSDQNGVVDIYNF 474
            PRKCFERAAEK H D+LS IVASCSWGK VAVG+G+ F+I+W+  EV+S++   +D+YNF
Sbjct: 1188 PRKCFERAAEKRHADSLSSIVASCSWGKHVAVGTGSRFDIVWDPKEVKSNEIEGMDVYNF 1247

Query: 473  LQLVR--SSGGESNTSCLGEDYDEFESGVAEPFSPEQDFGKPTFDDADLQCDVEHHHTGV 300
            L +V+  ++G E N +CLGED D+                    DD ++   +   HT  
Sbjct: 1248 LNMVKGLANGDEENNACLGEDIDDL------------------LDDDNMDWGMSPEHTS- 1288

Query: 299  DWGAVAAKPSE---GDPADGWNTKGPQEMSSKKSVDSWGK-----QIEESDAKGWGASAD 144
             + AV  +  E   G  ++GW++   Q  ++      WG+     Q++ ++   WG+ + 
Sbjct: 1289 GFDAVFDESFELLNGSTSNGWDSNKDQNKTTTNDWSGWGQNKSEIQVDVAETDQWGSGST 1348

Query: 143  RETLGG-TPAERGSVGGWNTTASQKLPSEEPADAWG 39
            ++     T  +    G W T  +Q   S++P  +WG
Sbjct: 1349 QKWKADITKEDSSKSGAWETGTNQN--SDQP--SWG 1380


>ref|XP_004511031.1| PREDICTED: DNA-directed RNA polymerase V subunit 1 isoform X1 [Cicer
            arietinum] gi|828329468|ref|XP_012574251.1| PREDICTED:
            DNA-directed RNA polymerase V subunit 1 isoform X1 [Cicer
            arietinum]
          Length = 2263

 Score = 1549 bits (4011), Expect = 0.0
 Identities = 788/1416 (55%), Positives = 1016/1416 (71%), Gaps = 16/1416 (1%)
 Frame = -2

Query: 4238 MEEN-VPPLVDARITDIRFSVATDDXXXXXXXXXXXINHPSQLTNPFLGLPLESGKCESC 4062
            ME+N    ++DA++  IRFS+AT             I+H SQL NPFLGLPLE G+CESC
Sbjct: 1    MEDNPTSSVLDAKVIGIRFSMATRHEISTASISDSTISHASQLANPFLGLPLEFGRCESC 60

Query: 4061 GTQEPGKCEGHFGYIQLPIPIYHPCHVTEXXXXXXXXXXXXXXXXXXXNVGSD----KSS 3894
            GT E GKCEGHFGYI+LP+PIYHP HVTE                      S     +S 
Sbjct: 61   GTSEAGKCEGHFGYIELPVPIYHPSHVTELKKILSLVCLNCLKLKKTKFPSSSSGLAQSL 120

Query: 3893 KSPCLYCLDIPIILINEAKTSDGVVLLELKLAGRSQLYDGFWNFLDKYGYRYGDGKRRIL 3714
             SPC   ++   + I E KT+DG   L LK++ +S+++DGFW FL+KYGYRYG    R L
Sbjct: 121  LSPCCEDVNAAQVSIREVKTADGACYLALKVS-KSKMHDGFWGFLEKYGYRYGGDHTRAL 179

Query: 3713 LPCEVHEILKRFSVETRKKLSSKGYFPQDGYILQKVPVPPNCLSIPXXXXXXXXXXXXXX 3534
            LPCEV EI+KRF  ET +KL+ KGYFPQDGY+L+ +PVPPNCLS+P              
Sbjct: 180  LPCEVMEIIKRFPQETNRKLAIKGYFPQDGYVLKYLPVPPNCLSVPVVSDGVSVMSSDPA 239

Query: 3533 XXMLRKVLKQAEIIKCSRSGRPNFESHKVEVNDLQSVVAQYFRARGTAKDTRAVKMRPGT 3354
              +LRK+L++ EII+ SRSG PNFESH+VE NDLQSVV QY + RGT+K TR ++ R G 
Sbjct: 240  MTILRKLLRKVEIIRSSRSGEPNFESHQVEANDLQSVVDQYLQVRGTSKATRDIETRYGV 299

Query: 3353 TKEAEDSATKAWLEKMRTFFISKGSGYCSRGVITGDAYKKVNEIGLPLEVAQRITFEEKV 3174
             KE  DS+TKAWLEKMRT FI KGSG+ SR VITGD YKK+NE+G+PLEVAQRITFEE+V
Sbjct: 300  NKELNDSSTKAWLEKMRTLFIRKGSGFSSRNVITGDGYKKINEVGIPLEVAQRITFEERV 359

Query: 3173 TECNKDHLQELVDKKLCLTYKDGASMYSLREGSKGHTLLKVGQVVHRRIMDGDILFINRP 2994
            +  N  +LQ+LVD+ +CLTYK+G S YSLREGSKGHT LK GQ+VHRRIMDGD++FINRP
Sbjct: 360  SIHNIRYLQKLVDENMCLTYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDVVFINRP 419

Query: 2993 PSTHKHSLQALSVYVHEDNTVKINPLICGPLDADFDGDCVHLFYPQSLAARAEVVELFSV 2814
            P+THKHSLQAL VY+H+D+TVKINPLICGPL ADFDGDCVHLFYPQSLAA+AEV+ELFSV
Sbjct: 420  PTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVLELFSV 479

Query: 2813 EQQLLSSHSGCLNLQLKNDSLLSLKIMFKRFFLNKVTAQQLAMFITTNLPQPALLKANCV 2634
            E+QLLSSHSG LNLQL  DSLLSLK++ K  FL++  A Q+AMF++  LP PAL KA   
Sbjct: 480  EKQLLSSHSGNLNLQLSTDSLLSLKMLVKSCFLDRAAANQMAMFLSLPLPMPALFKAGSG 539

Query: 2633 ASQWTVLQILQMALPSQFDCLGERFFISDGEILKVDFNKDILQSMFNDIISSVLFQMDSK 2454
             S WT +Q+LQ ALPS FDC G R+ I   EIL+ DF +D+L S+ N++ +S+ F    K
Sbjct: 540  DSYWTSVQMLQCALPSSFDCTGGRYLIRQREILEFDFTRDLLPSIINEVAASIFFSQGPK 599

Query: 2453 EALNVFNSLQPLLMENLFLDGYSVCLKDFYISKSVLGNLPRSIQEVSPLLRQLRSTYNEL 2274
            EALN F+ LQP LMEN+F  GYSV L+DF IS++V   + RSI ++SPLL QLR  Y EL
Sbjct: 600  EALNFFDVLQPFLMENIFAHGYSVGLQDFSISRAVKRVINRSIGKISPLLHQLRVVYKEL 659

Query: 2273 VELQVGNHLRNVKAPIVNFILKSSGLGNLIDSKSESSINKVVEQMGFLGLQLADRGKFYS 2094
            V  Q+  H+++++ P++NF LKS+ LG+LIDSKS+S+++KVV+Q+GFLG QL +RGKFYS
Sbjct: 660  VAQQLEKHMQDIELPVINFALKSTKLGDLIDSKSKSALDKVVQQIGFLGQQLFERGKFYS 719

Query: 2093 RNLVEDMTSLFLHKYAVNGVECPSEAFGLIKSCFFHGLNPYEDLVHSISSREVLVRSSRG 1914
            + LVED+ S F  K   +G   PS  FGL+K CFFHGL+PYE+LVHSI++RE++VRSSRG
Sbjct: 720  KGLVEDVGSHFHVKCFYDGDGYPSAEFGLLKGCFFHGLDPYEELVHSIATREIIVRSSRG 779

Query: 1913 LTEPGTLFKNLMTILRDVVICYDGTVRNVCSNSIIQFQYAVEAGMNPHRFYPSGEPVGAL 1734
            L+EPGTLFKNLM ILRDVVICYDGTVRNVCSNSIIQF+Y +++G      +P+GEPVG L
Sbjct: 780  LSEPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYGIQSGDKSQPLFPAGEPVGVL 839

Query: 1733 AATAISNPAYKAVLDXXXXSNASWDLMKEILVCKINFMNDTNDRRVILYLNDCCCVKKHC 1554
            AAT++SNPAYKAVLD    SN+SW+ MKEIL+CK+NF N+ NDRRVILYLNDC C + +C
Sbjct: 840  AATSMSNPAYKAVLDASPSSNSSWEFMKEILLCKVNFRNEPNDRRVILYLNDCDCGRSYC 899

Query: 1553 KENAAFLVQNQLKKVSLKDISVDFLIEYQNSQTSQESSGINTRLVGHIHLDKKRLKDLDR 1374
            +ENAA+LV+NQL+KVSLKD ++DF +EYQ  +   + S  +  LVGHIHL++  L+ L  
Sbjct: 900  RENAAYLVKNQLRKVSLKDAALDFTVEYQQQRRRNDGSE-DAGLVGHIHLNEAMLEKLKI 958

Query: 1373 SMHEVLLKCQETISFFRRKKKNKLVDYLKNIFLSVSECCYFEQSYDSEWCQIPCLQFSWR 1194
            +M EV  KCQE ++ F RKK  K+  + +   L  SE C    S        PC+   W 
Sbjct: 959  NMSEVYQKCQERLNSFSRKK--KVFHFFRKTELFFSESCSSLNS------SAPCVTILW- 1009

Query: 1193 LDPGGPSIETISQIMTNMICPILLDTIIKGDRRVYAANIIWISPDTNTWVKNHSSTPHGE 1014
              P G  ++  ++++ +MICP+LLDTII+GD R+ +ANIIW++P TNTWV+N S + +GE
Sbjct: 1010 --PDGDDLDQTTKVLADMICPVLLDTIIQGDPRISSANIIWVNPGTNTWVRNPSKSSNGE 1067

Query: 1013 LALEIILEKKFVKQHGDAWRLALDSCLPMIDLIDTRRSIPYAIRQVQEILGISCAFDQAV 834
            LAL++ILEK+ VKQ GDAWR+ LDSCLP++ LIDTRRS PYAI+Q+QE+LGISC FDQA+
Sbjct: 1068 LALDVILEKEAVKQSGDAWRIILDSCLPVLHLIDTRRSTPYAIKQIQELLGISCTFDQAI 1127

Query: 833  QRLSTSIRMVNKGVLKEHLVLAVNSMTCTGSLIGFNKGGYKALFRSLNVQIPFTEATLFT 654
            QRL+ S+RMV KGVL+EHL+L  +SMTC G+L+GFN GGYK L R LN+Q+PFT+ATLFT
Sbjct: 1128 QRLAASVRMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKTLARQLNIQVPFTDATLFT 1187

Query: 653  PRKCFERAAEKCHTDTLSGIVASCSWGKQVAVGSGTHFEILWNKNEVQSDQNGVVDIYNF 474
            PRKCFERAAEK H D+LS IVASCSWGK VAVG+G+ F+I+W+  EV+S++   +D+YNF
Sbjct: 1188 PRKCFERAAEKRHADSLSSIVASCSWGKHVAVGTGSRFDIVWDPKEVKSNEIEGMDVYNF 1247

Query: 473  LQLVR--SSGGESNTSCLGEDYDEFESGVAEPFSPEQDFGKPTFDDADLQCDVEHHHTGV 300
            L +V+  ++G E N +CLGED D+                    DD ++   +   HT  
Sbjct: 1248 LNMVKGLANGDEENNACLGEDIDDL------------------LDDDNMDWGMSPEHTS- 1288

Query: 299  DWGAVAAKPSE---GDPADGWNTKGPQEMSSKKSVDSWGK-----QIEESDAKGWGASAD 144
             + AV  +  E   G  ++GW++   Q  ++      WG+     Q++ ++   WG+ + 
Sbjct: 1289 GFDAVFDESFELLNGSTSNGWDSNKDQNKTTTNDWSGWGQNKSEIQVDVAETDQWGSGST 1348

Query: 143  RETLGG-TPAERGSVGGWNTTASQKLPSEEPADAWG 39
            ++     T  +    G W T  +Q   S++P  +WG
Sbjct: 1349 QKWKADITKEDSSKSGAWETGTNQN--SDQP--SWG 1380