BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Aconitum23_contig00007359
         (1589 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010241126.1| PREDICTED: RNA polymerase-associated protein...   598   e-168
ref|XP_002519028.1| RNA polymerase-associated protein RTF1, puta...   577   e-161
ref|XP_012091565.1| PREDICTED: RNA polymerase-associated protein...   575   e-161
ref|XP_009347098.1| PREDICTED: RNA polymerase-associated protein...   570   e-159
ref|XP_009378467.1| PREDICTED: RNA polymerase-associated protein...   570   e-159
ref|XP_008382360.1| PREDICTED: RNA polymerase-associated protein...   569   e-159
ref|XP_007217631.1| hypothetical protein PRUPE_ppa002666mg [Prun...   562   e-157
ref|XP_002305685.1| plus-3 domain-containing family protein [Pop...   552   e-154
ref|XP_011027887.1| PREDICTED: RNA polymerase-associated protein...   552   e-154
ref|XP_008228301.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymera...   546   e-152
ref|XP_004293522.1| PREDICTED: RNA polymerase-associated protein...   531   e-148
ref|XP_013457082.1| RNA polymerase-associated RTF1-like protein ...   529   e-147
ref|XP_010547407.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymera...   526   e-146
ref|XP_010418054.1| PREDICTED: RNA polymerase-associated protein...   520   e-144
ref|XP_010473306.1| PREDICTED: RNA polymerase-associated protein...   519   e-144
ref|XP_002888111.1| At1g61040/T7P1_17 [Arabidopsis lyrata subsp....   512   e-142
ref|XP_006392066.1| hypothetical protein EUTSA_v10023338mg [Eutr...   512   e-142
ref|NP_176299.1| Paf1C-like transcription factor [Arabidopsis th...   511   e-142
ref|XP_006300844.1| hypothetical protein CARUB_v10019938mg [Caps...   509   e-141
gb|AAM10312.1| At1g61040/T7P1_17 [Arabidopsis thaliana]               509   e-141

>ref|XP_010241126.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Nelumbo
            nucifera]
          Length = 666

 Score =  598 bits (1543), Expect = e-168
 Identities = 330/545 (60%), Positives = 390/545 (71%), Gaps = 17/545 (3%)
 Frame = -1

Query: 1589 LENLLLEAAGRTGASGRNRHSRPPARRQRXXXXXXXXXXXXXXXXXXD---PGYATRKPS 1419
            LENLLLEAAGRTG  GRNRHSRPP  R+R                  D   PGY+ RKPS
Sbjct: 4    LENLLLEAAGRTGGPGRNRHSRPPPSRRRRDDSYFDDGSDSKDDDDSDDDDPGYSGRKPS 63

Query: 1418 GSQVPLKKRLDSTDKDDARGSLGDDGEYRXXXXXXXXXXXXXXXXD----LYKNDYDREQ 1251
            GSQVPLKKRLD+ DKDD R S  DD +Y                 D    LYK+D DRE+
Sbjct: 64   GSQVPLKKRLDAHDKDDDRDSRDDDRDYDDDDDDEDRRAGSGDDSDVGSDLYKDDRDREE 123

Query: 1250 LAQMTELEREMILSDRAQRKDDQRLTERVRAKQSGKKNQVVKETPDTPSSRVRSSARFAE 1071
            LA M+EL+RE ILS+RA +KDD+RL E VRA+Q GKK  ++KETP  PS RVRSS+R+A+
Sbjct: 124  LANMSELQREFILSERATKKDDKRLQEAVRARQGGKKTDIMKETP--PSVRVRSSSRYAD 181

Query: 1070 KAAAKGDALNELRAKRLKQQDPEAHRKLIGATRGNSTARDSSPVRKKPVTTAXXXXXXXX 891
            K AAK DALNELR KR  +QDPE HRKL  + RG   AR  SPVR++ + TA        
Sbjct: 182  KLAAKDDALNELRNKRRNKQDPEGHRKLRDSGRGGLGARGGSPVRRRSILTAASPSSSSQ 241

Query: 890  XXXXXXXXXXXXXXXXXXXXXXXXSN-----KEEITLEDIKEIIIRRSKLAKWFMEPFFE 726
                                     +     KE  T E+IK I IRRSKLAKWFMEPFFE
Sbjct: 242  SDSQSGSHSRDDGSTGDGDLGDSDDDRHGAGKEVPTFEEIKSITIRRSKLAKWFMEPFFE 301

Query: 725  EVIVGCFVRVGIGR-KDNKAYYRLCIVKNVDATEPNKQYRLENKSTHKYLSVTWGR--SE 555
            E+IVGCFVRVGIG  +  ++ YRLC+VKNVDAT+PNKQY+LEN++T+KYL+  WG   S 
Sbjct: 302  ELIVGCFVRVGIGMSRSGQSIYRLCMVKNVDATDPNKQYKLENRTTYKYLNCIWGNESSA 361

Query: 554  ARWQMAVISDSLPLEVEFNEWVKAMKKDGIRMPTRQDIQEKQEAIQKAVTFVYSSATVKQ 375
            ARWQMA +SDS PL  EFN+W++ +++ G RMPT+QD+ EK+EAIQK  TFVYS+ATVKQ
Sbjct: 362  ARWQMARVSDSAPLVEEFNDWLREVERHGGRMPTKQDVSEKREAIQKTNTFVYSAATVKQ 421

Query: 374  MLQEKKSAASRPLNIAAEKERLRREIEVAESKRNKAEVERIQTRLQELEAMSKQAKEKDS 195
            MLQEKK+A+SRPLNIAAEKERLRRE+EVAES+R++AEVERI+ RLQELEAMS+QAKEKDS
Sbjct: 422  MLQEKKTASSRPLNIAAEKERLRREMEVAESRRDEAEVERIRARLQELEAMSRQAKEKDS 481

Query: 194  RAVRLSEMNKKNRAENFRNASEVKPVNTSLKAGEAGYDPFSRRWTMSRNYYVS--NAAAA 21
            +AVRL+EMNK+NRAENF+NASE+KPVNTSLKAGEAGYDPFSRRWT SRNYYVS     A 
Sbjct: 482  KAVRLAEMNKRNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSKPGEGAP 541

Query: 20   ATNGD 6
              NG+
Sbjct: 542  TANGE 546


>ref|XP_002519028.1| RNA polymerase-associated protein RTF1, putative [Ricinus communis]
            gi|223541691|gb|EEF43239.1| RNA polymerase-associated
            protein RTF1, putative [Ricinus communis]
          Length = 660

 Score =  577 bits (1486), Expect = e-161
 Identities = 317/540 (58%), Positives = 395/540 (73%), Gaps = 12/540 (2%)
 Frame = -1

Query: 1589 LENLLLEAAGRTGASGRNRHSRPPARRQRXXXXXXXXXXXXXXXXXXDPGYATRKPSGSQ 1410
            LENLLLEAAGRTG SGRNR++ PP+RR+R                  D GY++RKPSGSQ
Sbjct: 4    LENLLLEAAGRTGTSGRNRNALPPSRRRREGSYSDGGSDSRDDDSDDDRGYSSRKPSGSQ 63

Query: 1409 VPLKKRLDSTDKDDARGSLGDDGEYRXXXXXXXXXXXXXXXXD--LYKNDYDREQLAQMT 1236
            VPLKKRLD T++DD +GS  D+G+Y                    LYKN+ DR +LAQM+
Sbjct: 64   VPLKKRLDPTERDDDQGSQ-DEGDYDDGNSDREGDSSDGSDVGEDLYKNEDDRRKLAQMS 122

Query: 1235 ELEREMILSDRAQRKDDQRLTERVRAK-QSGKKNQVVKETPDTPSSR-VRSSARFAEKAA 1062
            ELEREMILS+RA +K D+ LTER+R+K +S +  +  KETP  PSSR VR+SAR A++AA
Sbjct: 123  ELEREMILSERADKKGDKNLTERIRSKRESERTTRSRKETPPLPSSRGVRTSARSADRAA 182

Query: 1061 AKGDALNELRAKRLKQQDPEAHRKLIGATRGNSTARDSSPVRKKPVTTAXXXXXXXXXXX 882
            AK DALNEL+A+RLKQQDPEAHRKL  A+R  S +R  SP+++K  T+A           
Sbjct: 183  AKDDALNELKARRLKQQDPEAHRKLRDASRRGSGSRGFSPIKRKRFTSASLSSSSSESES 242

Query: 881  XXXXXXXXXXXXXXXXXXXXXSN--KEEITLEDIKEIIIRRSKLAKWFMEPFFEEVIVGC 708
                                      +  T +DI+EI IRRSKLAKWFMEP+FEE+IVGC
Sbjct: 243  RSHSEDEGSTGDGGMADSDDDGEPGSQGPTFDDIREITIRRSKLAKWFMEPWFEELIVGC 302

Query: 707  FVRVGIGRKDNKAYYRLCIVKNVDATEPNKQYRLENKSTHKYLSVTWGR--SEARWQMAV 534
            FVRVGIGR  +   YRLC+V+NVDA +P++ Y+LENK+T+KYL+V WG   S ARWQMA+
Sbjct: 303  FVRVGIGRSKSGPIYRLCLVRNVDAADPDRPYKLENKTTYKYLNVIWGNESSAARWQMAM 362

Query: 533  ISDSLPLEVEFNEWVKAMKKDGIRMPTRQDIQEKQEAIQKAVTFVYSSATVKQMLQEKKS 354
            ISDS P E E+ +WV+ +++ G RMPT+QDI EK+EAI+K+ TFVYS+ATVKQMLQEKKS
Sbjct: 363  ISDSAPTEDEYKQWVREVERSGGRMPTKQDILEKKEAIRKSNTFVYSAATVKQMLQEKKS 422

Query: 353  AASRPLNIAAEKERLRREIEVAESKRNKAEVERIQTRLQELEAMSKQAKEKDSRAVRLSE 174
            A+SRPLN+AAEK+RLRRE+EVA+SK++ AEVERI+ R+QELEA S+Q + KD++A+RL+E
Sbjct: 423  ASSRPLNVAAEKDRLRRELEVAQSKQDDAEVERIRARIQELEA-SRQTQGKDAKAIRLAE 481

Query: 173  MNKKNRAENFRNASEVKPVNTSLKAGEAGYDPFSRRWTMSRNYYVSNA----AAAATNGD 6
            MN+KNRAENFRNASE+KPVNTSLKAGEAGYDPFSRRWT SRNYYVS      AAAATN +
Sbjct: 482  MNRKNRAENFRNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSKPAGGDAAAATNNE 541


>ref|XP_012091565.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Jatropha
            curcas] gi|643703874|gb|KDP20938.1| hypothetical protein
            JCGZ_21409 [Jatropha curcas]
          Length = 658

 Score =  575 bits (1482), Expect = e-161
 Identities = 315/540 (58%), Positives = 393/540 (72%), Gaps = 13/540 (2%)
 Frame = -1

Query: 1589 LENLLLEAAGRTGASGRNRHSRPPARRQRXXXXXXXXXXXXXXXXXXDPGYATRKPSGSQ 1410
            LENLLLEAAGRTG+SGRNR++ PP+RR+R                  D GYA+RKPSGSQ
Sbjct: 4    LENLLLEAAGRTGSSGRNRNAHPPSRRRREGSYSDGGSDSRDEDSDDDRGYASRKPSGSQ 63

Query: 1409 VPLKKRLDSTDKDDARGSLGDDG-EYRXXXXXXXXXXXXXXXXDLYKNDYDREQLAQMTE 1233
            VPLKKRLD  ++DD +GS  + G +                  DLYK++ DR +LAQM+E
Sbjct: 64   VPLKKRLDPAERDDDQGSQEEGGYDDGASDREGDSSDESDVGDDLYKDEDDRRKLAQMSE 123

Query: 1232 LEREMILSDRAQRKDDQRLTERVRAKQSGKK-NQVVKETPDTPSSR-VRSSARFAEKAAA 1059
            LEREMILS+RA +K D+ LTER+R+K+  ++  +  KETP  PSSR VR+SAR A++AAA
Sbjct: 124  LEREMILSERADKKGDKNLTERIRSKRDSERATRSRKETPPLPSSRGVRTSARSADRAAA 183

Query: 1058 KGDALNELRAKRLKQQDPEAHRKLIGATRGNSTARDSSPVRKKPVTTAXXXXXXXXXXXX 879
            K DALNELRAKRLKQQDPEAHRKL   +RG S +R  SPVR+K  T+A            
Sbjct: 184  KDDALNELRAKRLKQQDPEAHRKLRDVSRGTSGSRGVSPVRRKRFTSASLSSSSSESDSR 243

Query: 878  XXXXXXXXXXXXXXXXXXXXSN--KEEITLEDIKEIIIRRSKLAKWFMEPFFEEVIVGCF 705
                                     E +T +DI+E+ IRRSKLAKW MEP+FEE+IVGCF
Sbjct: 244  SHSEDEASTGDGGMADSDEDREPGSEGLTYDDIREVTIRRSKLAKWLMEPWFEELIVGCF 303

Query: 704  VRVGIGRKDNKAYYRLCIVKNVDATEPNKQYRLENKSTHKYLSVTWGR--SEARWQMAVI 531
            VRVGIGR  +   YRLC+V+NVDA +P++ Y+LENK+T+KYL+V WG   S ARWQMA++
Sbjct: 304  VRVGIGRSKSGPIYRLCLVRNVDAADPDRPYKLENKTTYKYLNVIWGNESSAARWQMAMV 363

Query: 530  SDSLPLEVEFNEWVKAMKKDGIRMPTRQDIQEKQEAIQKAVTFVYSSATVKQMLQEKKSA 351
            SDS P E E+ +WV+ +++ G RMPT+QDI EK+EAI+K+ TFVYS+ATVKQMLQEKKSA
Sbjct: 364  SDSAPTEDEYKQWVREVERSGGRMPTKQDILEKKEAIKKSNTFVYSAATVKQMLQEKKSA 423

Query: 350  ASRPLNIAAEKERLRREIEVAESKRNKAEVERIQTRLQELEAMSKQAKEKDSRAVRLSEM 171
            ++RPLN+AAEK+RLRRE+EVA+ K++ AEVERI+ R+QELEA S+QA+EKD++A+RL+EM
Sbjct: 424  STRPLNVAAEKDRLRRELEVAQMKQDDAEVERIRARIQELEA-SRQAQEKDAKAIRLAEM 482

Query: 170  NKKNRAENFRNASEVKPVNTSLKAGEAGYDPFSRRWTMSRNYYVSN------AAAAATNG 9
            N+KNRAENFRNASE+KPVNTSLKAGEAGYDPFSRRWT SRNYYVS       AA A  NG
Sbjct: 483  NRKNRAENFRNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSKPGGADVAAEANNNG 542


>ref|XP_009347098.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Pyrus x
            bretschneideri]
          Length = 657

 Score =  570 bits (1469), Expect = e-159
 Identities = 305/522 (58%), Positives = 378/522 (72%), Gaps = 4/522 (0%)
 Frame = -1

Query: 1589 LENLLLEAAGRTGASGRNRHSRPPARRQRXXXXXXXXXXXXXXXXXXDPGYATRKPSGSQ 1410
            LENLLLEAAGRT +SG+NRHS   +RR+R                    GYA+RKPSG Q
Sbjct: 4    LENLLLEAAGRTSSSGKNRHSHSSSRRRRGGSYSDGGSDSRGDDSDDGRGYASRKPSGPQ 63

Query: 1409 VPLKKRLDSTDKDDARGSLGDDGEYRXXXXXXXXXXXXXXXXDLYKNDYDREQLAQMTEL 1230
            VPLKKRLD T+ DD +GS  + G                   DLYK++ DR +LA+M+EL
Sbjct: 64   VPLKKRLDPTEVDDEQGSQEEGGYNDSGSDRGGDSNESDVGSDLYKDEDDRRKLAEMSEL 123

Query: 1229 EREMILSDRAQRKDDQRLTERVRAK-QSGKKNQVVKETPDTPSSRVRSSARFAEKAAAKG 1053
            +RE+ILS+RAQ+KDD+ L E+ R K   GK  Q  KETP  PSSRVRSSAR A++AAAK 
Sbjct: 124  QRELILSERAQKKDDKSLKEKFRPKWDKGKAPQSRKETPPLPSSRVRSSARSADRAAAKD 183

Query: 1052 DALNELRAKRLKQQDPEAHRKLIGATRG-NSTARDSSPVRKKPVTTAXXXXXXXXXXXXX 876
            DALNELRAKRLKQQDPEAHRKL  A+RG +S++R  S + +K  T               
Sbjct: 184  DALNELRAKRLKQQDPEAHRKLRDASRGGSSSSRSFSHLNRKSFTAVGRSSSSQSDSDSR 243

Query: 875  XXXXXXXXXXXXXXXXXXXSNKEEITLEDIKEIIIRRSKLAKWFMEPFFEEVIVGCFVRV 696
                                  E +T +DIKEI IRRSKLAKWFMEPFFEE+IVGCFVRV
Sbjct: 244  SRSEDDGSSGDDAMIDSDDERSEGLTFDDIKEITIRRSKLAKWFMEPFFEELIVGCFVRV 303

Query: 695  GIGRKDNKAYYRLCIVKNVDATEPNKQYRLENKSTHKYLSVTWGR--SEARWQMAVISDS 522
            GIGR  + A YRLC+V+NVDA++P++QY+LENK+THKYL+V WG   S ARWQMA+ISDS
Sbjct: 304  GIGRSKSGAIYRLCMVRNVDASDPDRQYKLENKTTHKYLNVVWGNENSAARWQMAMISDS 363

Query: 521  LPLEVEFNEWVKAMKKDGIRMPTRQDIQEKQEAIQKAVTFVYSSATVKQMLQEKKSAASR 342
             PLE EF +W++ +++ G R+P+++D+ EK+EAI+K  +FVYS+ATVKQM+QEKKSA+SR
Sbjct: 364  APLEEEFKQWIREVERSGGRLPSKEDVLEKKEAIKKTNSFVYSAATVKQMIQEKKSASSR 423

Query: 341  PLNIAAEKERLRREIEVAESKRNKAEVERIQTRLQELEAMSKQAKEKDSRAVRLSEMNKK 162
            PLNIA EK+RLRRE+EVA+SK++ AEVERIQTRLQ+LEA  +Q++ KDS+A+RL+EMN+K
Sbjct: 424  PLNIALEKDRLRRELEVAKSKQDDAEVERIQTRLQQLEA-RRQSQGKDSKAIRLAEMNRK 482

Query: 161  NRAENFRNASEVKPVNTSLKAGEAGYDPFSRRWTMSRNYYVS 36
            NR ENF+NASE+KP N  LKAGEAGYDPFSRRWT SRNYYVS
Sbjct: 483  NRVENFKNASELKPKNIGLKAGEAGYDPFSRRWTRSRNYYVS 524


>ref|XP_009378467.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Pyrus x
            bretschneideri]
          Length = 657

 Score =  570 bits (1469), Expect = e-159
 Identities = 305/522 (58%), Positives = 378/522 (72%), Gaps = 4/522 (0%)
 Frame = -1

Query: 1589 LENLLLEAAGRTGASGRNRHSRPPARRQRXXXXXXXXXXXXXXXXXXDPGYATRKPSGSQ 1410
            LENLLLEAAGRT +SG+NRHS   +RR+R                    GYA+RKPSG Q
Sbjct: 4    LENLLLEAAGRTSSSGKNRHSHSSSRRRRGGSYSDGGSDSRGDDSDDGRGYASRKPSGPQ 63

Query: 1409 VPLKKRLDSTDKDDARGSLGDDGEYRXXXXXXXXXXXXXXXXDLYKNDYDREQLAQMTEL 1230
            VPLKKRLD T+ DD +GS  + G                   DLYK++ DR +LA+M+EL
Sbjct: 64   VPLKKRLDPTEVDDEQGSQEEGGYNDSGSDRGGDSNESDVGSDLYKDEDDRRKLAEMSEL 123

Query: 1229 EREMILSDRAQRKDDQRLTERVRAK-QSGKKNQVVKETPDTPSSRVRSSARFAEKAAAKG 1053
            +RE+ILS+RAQ+KDD+ L E+ R K   GK  Q  KETP  PSSRVRSSAR A++AAAK 
Sbjct: 124  QRELILSERAQKKDDKSLKEKFRPKWDKGKAPQSRKETPPLPSSRVRSSARSADRAAAKD 183

Query: 1052 DALNELRAKRLKQQDPEAHRKLIGATRG-NSTARDSSPVRKKPVTTAXXXXXXXXXXXXX 876
            DALNELRAKRLKQQDPEAHRKL  A+RG +S++R  S + +K  T               
Sbjct: 184  DALNELRAKRLKQQDPEAHRKLRDASRGGSSSSRSFSHLNRKSFTAVGRSSSSQSDSDSR 243

Query: 875  XXXXXXXXXXXXXXXXXXXSNKEEITLEDIKEIIIRRSKLAKWFMEPFFEEVIVGCFVRV 696
                                  E +T +DIKEI IRRSKLAKWFMEPFFEE+IVGCFVRV
Sbjct: 244  SRSEDDGSSGDDAMIDSDDERSEGLTFDDIKEITIRRSKLAKWFMEPFFEELIVGCFVRV 303

Query: 695  GIGRKDNKAYYRLCIVKNVDATEPNKQYRLENKSTHKYLSVTWGR--SEARWQMAVISDS 522
            GIGR  + A YRLC+V+NVDA++P++QY+LENK+THKYL+V WG   S ARWQMA+ISDS
Sbjct: 304  GIGRSKSGAIYRLCMVRNVDASDPDRQYKLENKTTHKYLNVVWGNENSAARWQMAMISDS 363

Query: 521  LPLEVEFNEWVKAMKKDGIRMPTRQDIQEKQEAIQKAVTFVYSSATVKQMLQEKKSAASR 342
             PLE EF +W++ +++ G R+P+++D+ EK+EAI+K  +FVYS+ATVKQM+QEKKSA+SR
Sbjct: 364  APLEEEFKQWIREVERSGGRLPSKEDVLEKKEAIKKTNSFVYSAATVKQMIQEKKSASSR 423

Query: 341  PLNIAAEKERLRREIEVAESKRNKAEVERIQTRLQELEAMSKQAKEKDSRAVRLSEMNKK 162
            PLNIA EK+RLRRE+EVA+SK++ AEVERIQTRLQ+LEA  +Q++ KDS+A+RL+EMN+K
Sbjct: 424  PLNIALEKDRLRRELEVAKSKQDDAEVERIQTRLQQLEA-RRQSQGKDSKAIRLAEMNRK 482

Query: 161  NRAENFRNASEVKPVNTSLKAGEAGYDPFSRRWTMSRNYYVS 36
            NR ENF+NASE+KP N  LKAGEAGYDPFSRRWT SRNYYVS
Sbjct: 483  NRVENFKNASELKPKNIGLKAGEAGYDPFSRRWTRSRNYYVS 524


>ref|XP_008382360.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Malus
            domestica]
          Length = 657

 Score =  569 bits (1466), Expect = e-159
 Identities = 304/522 (58%), Positives = 378/522 (72%), Gaps = 4/522 (0%)
 Frame = -1

Query: 1589 LENLLLEAAGRTGASGRNRHSRPPARRQRXXXXXXXXXXXXXXXXXXDPGYATRKPSGSQ 1410
            LENLLLEAAGRT +SG+NRHS   +RR+R                    GYA+RKPSG Q
Sbjct: 4    LENLLLEAAGRTSSSGKNRHSHSSSRRRRGGSYSDGGSDSRGDDSDDGRGYASRKPSGPQ 63

Query: 1409 VPLKKRLDSTDKDDARGSLGDDGEYRXXXXXXXXXXXXXXXXDLYKNDYDREQLAQMTEL 1230
            VPLKKRLD T+ DD +GS  + G                   DLYK++ DR +LA+M+EL
Sbjct: 64   VPLKKRLDPTEVDDEQGSQEEGGYNDSGSDRGGDSNESDVGSDLYKDEDDRRKLAEMSEL 123

Query: 1229 EREMILSDRAQRKDDQRLTERVRAK-QSGKKNQVVKETPDTPSSRVRSSARFAEKAAAKG 1053
            +RE+ILS+RAQ+KDD+ L E+ R K   GK  Q  KETP  PSSRVRSSAR A++AAAK 
Sbjct: 124  QRELILSERAQKKDDKSLKEKFRPKWDKGKAPQSRKETPPLPSSRVRSSARSADRAAAKD 183

Query: 1052 DALNELRAKRLKQQDPEAHRKLIGATRG-NSTARDSSPVRKKPVTTAXXXXXXXXXXXXX 876
            DALNELRAKRLKQQDPEAHRKL  A+RG +S++R  S + +K  T               
Sbjct: 184  DALNELRAKRLKQQDPEAHRKLRDASRGGSSSSRSFSHLNRKSFTAVGRSSSSQSDSDSR 243

Query: 875  XXXXXXXXXXXXXXXXXXXSNKEEITLEDIKEIIIRRSKLAKWFMEPFFEEVIVGCFVRV 696
                                  E +T +DIKEI IRRSKLAKWFMEPFFEE+IVGCFVRV
Sbjct: 244  SRSEDDGSSGDDAMIDSDDERSEGLTFDDIKEITIRRSKLAKWFMEPFFEELIVGCFVRV 303

Query: 695  GIGRKDNKAYYRLCIVKNVDATEPNKQYRLENKSTHKYLSVTWGR--SEARWQMAVISDS 522
            GIGR  + A YRLC+V+NVDA++P++QY+LENK+THKYL+V WG   S ARWQMA+ISDS
Sbjct: 304  GIGRSKSGAIYRLCMVRNVDASDPDRQYKLENKTTHKYLNVVWGNENSAARWQMAMISDS 363

Query: 521  LPLEVEFNEWVKAMKKDGIRMPTRQDIQEKQEAIQKAVTFVYSSATVKQMLQEKKSAASR 342
             PLE EF +W++ +++ G R+P+++D+ EK+EAI+K  +FVYS+ATVKQM+QEKKSA+SR
Sbjct: 364  APLEEEFKQWIREVERSGGRLPSKEDVLEKKEAIKKTNSFVYSAATVKQMIQEKKSASSR 423

Query: 341  PLNIAAEKERLRREIEVAESKRNKAEVERIQTRLQELEAMSKQAKEKDSRAVRLSEMNKK 162
            PLNIA EK+RLRRE+EVA+SK++ AEVERI+TRLQ+LEA  +Q++ KDS+A+RL+EMN+K
Sbjct: 424  PLNIALEKDRLRRELEVAKSKQDDAEVERIETRLQQLEA-RRQSQGKDSKAIRLAEMNRK 482

Query: 161  NRAENFRNASEVKPVNTSLKAGEAGYDPFSRRWTMSRNYYVS 36
            NR ENF+NASE+KP N  LKAGEAGYDPFSRRWT SRNYYVS
Sbjct: 483  NRVENFKNASELKPKNIGLKAGEAGYDPFSRRWTRSRNYYVS 524


>ref|XP_007217631.1| hypothetical protein PRUPE_ppa002666mg [Prunus persica]
            gi|462413781|gb|EMJ18830.1| hypothetical protein
            PRUPE_ppa002666mg [Prunus persica]
          Length = 646

 Score =  562 bits (1448), Expect = e-157
 Identities = 301/521 (57%), Positives = 375/521 (71%), Gaps = 3/521 (0%)
 Frame = -1

Query: 1589 LENLLLEAAGRTGASGRNRHSRPPARRQRXXXXXXXXXXXXXXXXXXDPGYATRKPSGSQ 1410
            LENLLLEAAGRT ++G++RHS   +RR+R                    GYA+RKPSG+Q
Sbjct: 4    LENLLLEAAGRTSSAGKSRHSHSSSRRRRGGSYSDGGSDSRGDDSDDGRGYASRKPSGTQ 63

Query: 1409 VPLKKRLDSTDKDDARGSLGDDGEYRXXXXXXXXXXXXXXXXD-LYKNDYDREQLAQMTE 1233
            VPLKKRLD T+ DD +GS  ++G+Y                   LYK++ DR +LA+M+E
Sbjct: 64   VPLKKRLDPTEMDDEQGSQ-EEGDYNDSGSDRGGDSNESDVGSDLYKDEDDRRKLAEMSE 122

Query: 1232 LEREMILSDRAQRKDDQRLTERVRAKQSGKKNQVVKETPDTPSSRVRSSARFAEKAAAKG 1053
            L+RE+ILSDRAQ+KDD+ L E+ R K         KETP  PSSRVRSSAR A++AAAK 
Sbjct: 123  LQRELILSDRAQKKDDKSLKEKFRPK---------KETPPLPSSRVRSSARSADRAAAKD 173

Query: 1052 DALNELRAKRLKQQDPEAHRKLIGATRGNSTARDSSPVRKKPVTTAXXXXXXXXXXXXXX 873
            DALNELRAKRLKQQDPEAHRKL  A+RG+S +R  S + +K  T                
Sbjct: 174  DALNELRAKRLKQQDPEAHRKLRDASRGSSGSRSFSHMTRKSFTAVGRSSSSQSDSDSRS 233

Query: 872  XXXXXXXXXXXXXXXXXXSNKEEITLEDIKEIIIRRSKLAKWFMEPFFEEVIVGCFVRVG 693
                                 E +T +DIKEI IRRSKLAKW MEPFFEE+IVGCFVRVG
Sbjct: 234  HSEDDGSTGEDPMMDSDDERSEGLTFDDIKEITIRRSKLAKWLMEPFFEELIVGCFVRVG 293

Query: 692  IGRKDNKAYYRLCIVKNVDATEPNKQYRLENKSTHKYLSVTWGR--SEARWQMAVISDSL 519
            IGR  +   YRLC+V+NVDA++P+++Y+LENK+THKYL+V WG   S ARWQMA+ISDS 
Sbjct: 294  IGRSKSGPIYRLCMVRNVDASDPDRKYKLENKTTHKYLNVVWGNENSAARWQMAMISDSA 353

Query: 518  PLEVEFNEWVKAMKKDGIRMPTRQDIQEKQEAIQKAVTFVYSSATVKQMLQEKKSAASRP 339
            PLE EF +WV+ +++ G R+P++QD+ EK+EAI+K  TFVYS+ATVKQM++EKKSA+SRP
Sbjct: 354  PLEEEFKQWVREVERSGGRLPSKQDVLEKKEAIKKINTFVYSAATVKQMIEEKKSASSRP 413

Query: 338  LNIAAEKERLRREIEVAESKRNKAEVERIQTRLQELEAMSKQAKEKDSRAVRLSEMNKKN 159
            LNIA EK+RLRRE+EVA+SK + AEVERI+TRLQ+LEA  +Q++ KDS+AVRL+EMN+KN
Sbjct: 414  LNIALEKDRLRRELEVAQSKHDDAEVERIKTRLQQLEA-RRQSQGKDSKAVRLAEMNRKN 472

Query: 158  RAENFRNASEVKPVNTSLKAGEAGYDPFSRRWTMSRNYYVS 36
            R ENF+NASE+KPV T LKAGEAGYDPFSRRWT SRNYYVS
Sbjct: 473  RVENFKNASELKPVKTGLKAGEAGYDPFSRRWTRSRNYYVS 513


>ref|XP_002305685.1| plus-3 domain-containing family protein [Populus trichocarpa]
            gi|222848649|gb|EEE86196.1| plus-3 domain-containing
            family protein [Populus trichocarpa]
          Length = 662

 Score =  552 bits (1423), Expect = e-154
 Identities = 307/532 (57%), Positives = 380/532 (71%), Gaps = 9/532 (1%)
 Frame = -1

Query: 1589 LENLLLEAAGRTGASGRNRHS-RPPARRQRXXXXXXXXXXXXXXXXXXDPGYATRKPSGS 1413
            LENLLLEAAGRTG SGRNR+S  P  RR+R                  D GYA RKPSGS
Sbjct: 4    LENLLLEAAGRTGKSGRNRNSILPSRRRKREGSYSDGGSDSRDDDSDDDRGYANRKPSGS 63

Query: 1412 QVPLKKRLDSTDKDDARGSLGDDGEYRXXXXXXXXXXXXXXXXD--LYKNDYDREQLAQM 1239
            QVPLKKRL++ ++D   GS  D+G+Y                    LYK++ DR++LAQM
Sbjct: 64   QVPLKKRLETNERDGEEGSQ-DEGDYDGGGSDREGGSSDESDIGDDLYKDEDDRKKLAQM 122

Query: 1238 TELEREMILSDRAQRKDDQRLTERVRAKQSGKK-NQVVKETPDTPSSR-VRSSARFAEKA 1065
            +EL+RE+IL+DRA +K D+ LTE++R K+   K  +  KETP  PSSR VRSSAR A++A
Sbjct: 123  SELDRELILADRADKKGDKHLTEKIRLKRDNDKPTRSRKETPPLPSSRGVRSSARSADRA 182

Query: 1064 AAKGDALNELRAKRLKQQDPEAHRKLIGATRGNSTARDSSPVRKKPVTTAXXXXXXXXXX 885
            AAK DALNELRAKRLKQQDPEAHRKL   +RG++ +R  S V+K   T+A          
Sbjct: 183  AAKDDALNELRAKRLKQQDPEAHRKLRDVSRGSAGSRGFSQVKKNNFTSASLSSSSSESG 242

Query: 884  XXXXXXXXXXXXXXXXXXXXXXSN--KEEITLEDIKEIIIRRSKLAKWFMEPFFEEVIVG 711
                                       +  T EDIKEI IRR+KLAKWFMEP+FEE+I+G
Sbjct: 243  SRSHSEDEGSTGDGGMADSDEDVEPGSKGPTYEDIKEITIRRTKLAKWFMEPWFEELIIG 302

Query: 710  CFVRVGIGRKDNKAYYRLCIVKNVDATEPNKQYRLENKSTHKYLSVTWGR--SEARWQMA 537
            CFVRVGIGR  +   YRLC+V+NVDA EP+K Y+LENKST+KYL+VTWG   S ARWQMA
Sbjct: 303  CFVRVGIGRSKSGPVYRLCMVRNVDAAEPDKPYKLENKSTYKYLNVTWGADTSAARWQMA 362

Query: 536  VISDSLPLEVEFNEWVKAMKKDGIRMPTRQDIQEKQEAIQKAVTFVYSSATVKQMLQEKK 357
            ++SDS P E E+ +WV+ ++  G R+P++QDI EK+EAI+K+ TFVYS+ATVKQMLQEKK
Sbjct: 363  MVSDSGPTEEEYKQWVREVECGGGRLPSKQDILEKKEAIRKSNTFVYSAATVKQMLQEKK 422

Query: 356  SAASRPLNIAAEKERLRREIEVAESKRNKAEVERIQTRLQELEAMSKQAKEKDSRAVRLS 177
            SA+SRPLN+AAEK+RLRRE+E+A+SK ++AEVERI  R++ELEA S+ AK KD++A+RL+
Sbjct: 423  SASSRPLNVAAEKDRLRRELEIAQSKHDEAEVERINARIEELEA-SRHAKVKDAKAIRLA 481

Query: 176  EMNKKNRAENFRNASEVKPVNTSLKAGEAGYDPFSRRWTMSRNYYVSNAAAA 21
            EMN+KNR ENFRNASE+KPVNT LKAGEAGYDPFSRRWT SRNYYVS  A A
Sbjct: 482  EMNRKNRVENFRNASEMKPVNTGLKAGEAGYDPFSRRWTRSRNYYVSKPAEA 533


>ref|XP_011027887.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Populus
            euphratica]
          Length = 662

 Score =  552 bits (1422), Expect = e-154
 Identities = 306/532 (57%), Positives = 381/532 (71%), Gaps = 9/532 (1%)
 Frame = -1

Query: 1589 LENLLLEAAGRTGASGRNRHS-RPPARRQRXXXXXXXXXXXXXXXXXXDPGYATRKPSGS 1413
            LENLLLEAAGRTG SGRNR+S  P  RR+R                  D  YA RKPSGS
Sbjct: 4    LENLLLEAAGRTGKSGRNRNSILPSRRRKREGSYSDGGSDSRDDDSDDDRAYANRKPSGS 63

Query: 1412 QVPLKKRLDSTDKDDARGSLGDDGEYRXXXXXXXXXXXXXXXXD--LYKNDYDREQLAQM 1239
            QVPLKKRL++ ++D+  GS  D+G+Y                    LYK++ DR++LAQM
Sbjct: 64   QVPLKKRLETNERDEEEGSQ-DEGDYDGGGSDREGGSSDESDIGDDLYKDEDDRKKLAQM 122

Query: 1238 TELEREMILSDRAQRKDDQRLTERVRAKQSGKK-NQVVKETPDTPSSR-VRSSARFAEKA 1065
            +EL+RE+IL+DRA +K D+ LTE++R K+   K  +  KETP  PS+R VRSSAR A++A
Sbjct: 123  SELDRELILADRADKKGDKHLTEKIRLKRDNDKPTRSRKETPPLPSTRGVRSSARSADRA 182

Query: 1064 AAKGDALNELRAKRLKQQDPEAHRKLIGATRGNSTARDSSPVRKKPVTTAXXXXXXXXXX 885
            AAK DALNELRAKRLKQQDPEAHRKL   +RG++ +R  S V+K   T+A          
Sbjct: 183  AAKDDALNELRAKRLKQQDPEAHRKLRDVSRGSAGSRGFSQVKKNNFTSASLSSSSSESG 242

Query: 884  XXXXXXXXXXXXXXXXXXXXXXSN--KEEITLEDIKEIIIRRSKLAKWFMEPFFEEVIVG 711
                                       +  T EDIKEI IRR+KLAKWFMEP+FEE+I+G
Sbjct: 243  SRSHSEDEGSTGDGGMADSDEDVEPGSQGPTYEDIKEITIRRTKLAKWFMEPWFEELIIG 302

Query: 710  CFVRVGIGRKDNKAYYRLCIVKNVDATEPNKQYRLENKSTHKYLSVTWGR--SEARWQMA 537
            CFVRVGIGR  +   YRLC+V+NVDA EP+K Y+LENKST+KYL+VTWG   S ARWQMA
Sbjct: 303  CFVRVGIGRSRSGPVYRLCMVRNVDAAEPDKPYKLENKSTYKYLNVTWGADTSAARWQMA 362

Query: 536  VISDSLPLEVEFNEWVKAMKKDGIRMPTRQDIQEKQEAIQKAVTFVYSSATVKQMLQEKK 357
            ++SDS P E E+ +WV+ ++  G R+P++QDI EK+EAI+K+ TFVYS+ATVKQMLQEKK
Sbjct: 363  MVSDSGPTEEEYKQWVREVECGGGRLPSKQDILEKKEAIRKSNTFVYSAATVKQMLQEKK 422

Query: 356  SAASRPLNIAAEKERLRREIEVAESKRNKAEVERIQTRLQELEAMSKQAKEKDSRAVRLS 177
            SA+SRPLN+AAEK+RLRRE+E+A+SK ++AEVERI  R++ELEA S+QAK KD++A+RL+
Sbjct: 423  SASSRPLNVAAEKDRLRRELEIAQSKHDEAEVERINARIEELEA-SRQAKVKDAKAIRLA 481

Query: 176  EMNKKNRAENFRNASEVKPVNTSLKAGEAGYDPFSRRWTMSRNYYVSNAAAA 21
            EMN+KNR ENFRNASE+KPVNT LKAGEAGYDPFSRRWT SRNYYVS  A A
Sbjct: 482  EMNRKNRVENFRNASEMKPVNTGLKAGEAGYDPFSRRWTRSRNYYVSKPAEA 533


>ref|XP_008228301.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase-associated protein
            RTF1 homolog [Prunus mume]
          Length = 648

 Score =  546 bits (1406), Expect = e-152
 Identities = 297/522 (56%), Positives = 369/522 (70%), Gaps = 4/522 (0%)
 Frame = -1

Query: 1589 LENLLLEAAGRTGASGRNRHSRPPARRQRXXXXXXXXXXXXXXXXXXDPGYATRKPSGSQ 1410
            LENLLLEAAGRT            +RR+R                    GYA+RKPSG+Q
Sbjct: 4    LENLLLEAAGRTXXXX--------SRRRRGGSYSDGGSDSRGDDSDDGRGYASRKPSGTQ 55

Query: 1409 VPLKKRLDSTDKDDARGSLGDDGEYRXXXXXXXXXXXXXXXXD-LYKNDYDREQLAQMTE 1233
            VPLKKRLD T+ DD +GS  ++G+Y                   LYK++ DR +LA+M+E
Sbjct: 56   VPLKKRLDPTEMDDEQGSQ-EEGDYNDSGSDRGGDSNESDVGSDLYKDEDDRRKLAEMSE 114

Query: 1232 LEREMILSDRAQRKDDQRLTERVRAK-QSGKKNQVVKETPDTPSSRVRSSARFAEKAAAK 1056
            L+RE+ILSDRAQ+KDD+ L E+ R K   GK     KETP  PSSRVRSSAR A++AAAK
Sbjct: 115  LQRELILSDRAQKKDDKSLKEKFRPKWDKGKTTHSRKETPPLPSSRVRSSARSADRAAAK 174

Query: 1055 GDALNELRAKRLKQQDPEAHRKLIGATRGNSTARDSSPVRKKPVTTAXXXXXXXXXXXXX 876
             DALNELRAKRLKQQDPEAHRKL  A+RG+S +R  S + +K  T               
Sbjct: 175  DDALNELRAKRLKQQDPEAHRKLRDASRGSSGSRSFSHMTRKSFTAVGRSSSSQSDSDSR 234

Query: 875  XXXXXXXXXXXXXXXXXXXSNKEEITLEDIKEIIIRRSKLAKWFMEPFFEEVIVGCFVRV 696
                                  E +T +DIKEI IRRSKLAKW MEPFFEE+IVGCFVRV
Sbjct: 235  SHSEDEGSTGEDAMMDSDDERSEGLTFDDIKEITIRRSKLAKWLMEPFFEELIVGCFVRV 294

Query: 695  GIGRKDNKAYYRLCIVKNVDATEPNKQYRLENKSTHKYLSVTWGR--SEARWQMAVISDS 522
            GIGR  +   YRLC+V+NVDA++P+++Y+LENK+THKYL+V WG   S ARWQMA+ISDS
Sbjct: 295  GIGRSKSGPIYRLCMVRNVDASDPDRKYKLENKTTHKYLNVVWGNENSAARWQMAMISDS 354

Query: 521  LPLEVEFNEWVKAMKKDGIRMPTRQDIQEKQEAIQKAVTFVYSSATVKQMLQEKKSAASR 342
             P+E EF +WV+ +++ G R+P++QD+ EK+EAI+K  TFVYS+ATVKQM++EKKSA+SR
Sbjct: 355  APVEEEFKQWVREVERSGGRLPSKQDVLEKKEAIKKINTFVYSAATVKQMIEEKKSASSR 414

Query: 341  PLNIAAEKERLRREIEVAESKRNKAEVERIQTRLQELEAMSKQAKEKDSRAVRLSEMNKK 162
            PLNIA EK+RLRRE+EVA+SK + AEV+RI+TRLQ+LEA  +Q++ KDS+AVRL+EMN+K
Sbjct: 415  PLNIALEKDRLRRELEVAQSKHDDAEVDRIKTRLQQLEA-RRQSQGKDSKAVRLAEMNRK 473

Query: 161  NRAENFRNASEVKPVNTSLKAGEAGYDPFSRRWTMSRNYYVS 36
            NR ENF+NASE+KPV T LKAGEAGYDPFSRRWT SRNYYVS
Sbjct: 474  NRVENFKNASELKPVKTGLKAGEAGYDPFSRRWTRSRNYYVS 515


>ref|XP_004293522.1| PREDICTED: RNA polymerase-associated protein RTF1 [Fragaria vesca
            subsp. vesca]
          Length = 657

 Score =  531 bits (1369), Expect = e-148
 Identities = 287/523 (54%), Positives = 368/523 (70%), Gaps = 5/523 (0%)
 Frame = -1

Query: 1589 LENLLLEAAGRTGASGRNRHSRPPARRQRXXXXXXXXXXXXXXXXXXDPGYATRKPSGSQ 1410
            L++LLLEAAGRT +  ++RHS   ++R+R                    GYA+RKPSGSQ
Sbjct: 4    LDDLLLEAAGRTSSGRKSRHSHSSSKRRRDDSYSDGGSDSRGDDSDDGRGYASRKPSGSQ 63

Query: 1409 VPLKKRLDSTDKDDARGSLGDDGEYRXXXXXXXXXXXXXXXXD-LYKNDYDREQLAQMTE 1233
            VPLKKRLD ++  D   S  D+G+Y                   LYK++ DR +LA+M+E
Sbjct: 64   VPLKKRLDPSEVGDEHDSQ-DEGDYNDSGSDRGGESNESDVGSDLYKDENDRRKLAEMSE 122

Query: 1232 LEREMILSDRAQRKDDQRLTERVRAK-QSGKKNQVVKETPDTPSSRVRSSARFAEKAAAK 1056
            L+RE+ILSDRAQ+KDD+ L E+ R K   GK  Q  K TP  PSSRVRSSAR A++AAAK
Sbjct: 123  LQRELILSDRAQKKDDKSLKEKFRPKWDKGKATQSRKVTPPLPSSRVRSSARSADRAAAK 182

Query: 1055 GDALNELRAKRLKQQDPEAHRKLIGATRGNSTARDSSPVRKKPVTTAXXXXXXXXXXXXX 876
             DALNELRAKRLKQQDPEAHRKL   +RG+  +++ S   KK  +               
Sbjct: 183  DDALNELRAKRLKQQDPEAHRKLRDVSRGSVGSKNFSHTIKKSFSAVRRSSSSQSDSESR 242

Query: 875  XXXXXXXXXXXXXXXXXXXSNKEEITLEDIKEIIIRRSKLAKWFMEPFFEEVIVGCFVRV 696
                                  + +T EDIKEI IRRS+LAKW MEPFFEE+IVGC VRV
Sbjct: 243  SHSDDDGSSADDAIDSDDERGNQGLTFEDIKEITIRRSRLAKWLMEPFFEELIVGCCVRV 302

Query: 695  GIGR-KDNKAYYRLCIVKNVDATEPNKQYRLENKSTHKYLSVTWGR--SEARWQMAVISD 525
            GIG+ K  +  YRLC V NVD+++P++QY+LENK+THKYL+V WG   S ARWQMA++SD
Sbjct: 303  GIGKTKSGRPIYRLCSVCNVDSSDPDRQYKLENKTTHKYLNVVWGNENSAARWQMAMVSD 362

Query: 524  SLPLEVEFNEWVKAMKKDGIRMPTRQDIQEKQEAIQKAVTFVYSSATVKQMLQEKKSAAS 345
            SLPLE E+++WV+ ++K+G R+P+++D+ EK+EAI+K  TFVYS+ TVKQM+QEKKSA+S
Sbjct: 363  SLPLEEEYDQWVREVEKNGGRLPSKEDVLEKKEAIKKTNTFVYSAKTVKQMIQEKKSASS 422

Query: 344  RPLNIAAEKERLRREIEVAESKRNKAEVERIQTRLQELEAMSKQAKEKDSRAVRLSEMNK 165
            RPLNIA EK+RLRRE+E+A+SK + AEVERI+ RL++LEA  +Q++ KDS+AVRL+EMN+
Sbjct: 423  RPLNIALEKDRLRRELEIAQSKHDDAEVERIKARLEQLEA-RQQSQGKDSKAVRLAEMNR 481

Query: 164  KNRAENFRNASEVKPVNTSLKAGEAGYDPFSRRWTMSRNYYVS 36
            KNR +NF+NAS +KPV T LKAGEAGYDPFSRRWT SRNYYVS
Sbjct: 482  KNRVDNFKNASGLKPVKTGLKAGEAGYDPFSRRWTRSRNYYVS 524


>ref|XP_013457082.1| RNA polymerase-associated RTF1-like protein [Medicago truncatula]
            gi|657389397|gb|KEH31113.1| RNA polymerase-associated
            RTF1-like protein [Medicago truncatula]
          Length = 655

 Score =  529 bits (1362), Expect = e-147
 Identities = 293/539 (54%), Positives = 377/539 (69%), Gaps = 10/539 (1%)
 Frame = -1

Query: 1589 LENLLLEAAGRTGASGRNRHSRPPARRQRXXXXXXXXXXXXXXXXXXDPGYATRKPSGSQ 1410
            LENLLLEAAGRTGA+GRNRHS PP+RR+R                  +  YA+RKPSGSQ
Sbjct: 4    LENLLLEAAGRTGAAGRNRHSLPPSRRRRDGSYSDGGSDSRDDDSDDELNYASRKPSGSQ 63

Query: 1409 VPLKKRLDSTDKDDARGSLGDDGEYRXXXXXXXXXXXXXXXXDLYKNDYDREQLAQMTEL 1230
            VPLKKRLD  D+DD  GS  +  +                  DLYK++ DR +L++M+EL
Sbjct: 64   VPLKKRLDPADRDDDLGSQEEADDDGRSDREGDTSDESNIGDDLYKDEDDRRKLSEMSEL 123

Query: 1229 EREMILSDRAQRKDDQRLTERVRAK-QSGKKNQVVKETPDTPSSRVRSSARFAEKAAAKG 1053
            +REMILSDRA +KDD+ L  ++ +K + GK     K++P   SSR+R+SAR A+++A K 
Sbjct: 124  QREMILSDRASKKDDKSLLGKIASKREKGKAIMTGKQSPPLSSSRMRASARSADRSA-KN 182

Query: 1052 DALNELRAKRLKQQDPEAHRKLIGATRGNSTARDSSPVRKKPVTTAXXXXXXXXXXXXXX 873
            +ALNELRAKRLKQQDPEAHR+L  A+R +S  R+ SP ++K  T+A              
Sbjct: 183  EALNELRAKRLKQQDPEAHRRLREASR-SSGPRNFSPPKRKSFTSANLSSSSHSDSESRS 241

Query: 872  XXXXXXXXXXXXXXXXXXSN----KEEITLEDIKEIIIRRSKLAKWFMEPFFEEVIVGCF 705
                                     E ++ +DIKEI IRRSKLAKWFMEPFFEE+IVGCF
Sbjct: 242  HSDDEGSTGDGGIADSDDDRALSGSEGLSFQDIKEITIRRSKLAKWFMEPFFEELIVGCF 301

Query: 704  VRVGIGRKDNKAYYRLCIVKNVDATEPNKQYRLENKSTHKYLSVTWGR--SEARWQMAVI 531
            VRVGIGR      YRLC+VKNVD+++P++QY+LENK+T+KYL+V WG   S ARWQMA+I
Sbjct: 302  VRVGIGRSKTGPIYRLCMVKNVDSSDPDRQYKLENKTTYKYLNVVWGNESSAARWQMAMI 361

Query: 530  SDSLPLEVEFNEWVKAMKKDGIRMPTRQDIQEKQEAIQKAVTFVYSSATVKQMLQEKKSA 351
            SDS PLE E+ +WVK +++ G RMP++QD+ +K++AI K +TFVYS+ATVKQM+QEKKSA
Sbjct: 362  SDSPPLEEEYKQWVKEVERSGGRMPSKQDVLDKKQAINKIITFVYSAATVKQMIQEKKSA 421

Query: 350  ASRPLNIAAEKERLRREIEVAESKRNKAEVERIQTRLQELEAMSKQAKEKDSRAVRLSEM 171
            +SRPLNIAAEK+RLR ++E A+ K + AEVERI+ RL ELEA S+ AK KD++A++L+EM
Sbjct: 422  SSRPLNIAAEKDRLRSDLERAQGKNDDAEVERIKARLLELEA-SRHAKVKDAKALKLAEM 480

Query: 170  NKKNRAENFRNASEVKPVNTSLKAGEAGYDPFSRRWTMSRNYYV---SNAAAAATNGDV 3
            N+KNR ENF+NASE++P+ T LK G+AGYDPFSRRWT SRNYYV   S  AAA  N  V
Sbjct: 481  NRKNRVENFKNASELRPL-TGLKEGDAGYDPFSRRWTRSRNYYVATPSEKAAALNNNTV 538


>ref|XP_010547407.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase-associated protein
            RTF1 homolog [Tarenaya hassleriana]
          Length = 648

 Score =  526 bits (1354), Expect = e-146
 Identities = 281/524 (53%), Positives = 365/524 (69%), Gaps = 8/524 (1%)
 Frame = -1

Query: 1589 LENLLLEAAGRTGASGRNRHSRPPARRQRXXXXXXXXXXXXXXXXXXDPGYATRKPSGSQ 1410
            LE LLLEAAGRT A GRNR S PP+RR+R                    G+++RKPSGSQ
Sbjct: 4    LETLLLEAAGRTNAGGRNRQSHPPSRRRREGSYSDGGSDSKDDSDEDR-GFSSRKPSGSQ 62

Query: 1409 VPLKKRLDSTDKDD----ARGSLGDDGEYRXXXXXXXXXXXXXXXXDLYKNDYDREQLAQ 1242
            VPLKKRL+S+D++D      G  GD G  R                 LYKN+ DR++LA 
Sbjct: 63   VPLKKRLESSDREDRAARGEGDFGDGGSDREGDSSDESDFGDD----LYKNEEDRQKLAG 118

Query: 1241 MTELEREMILSDRAQRKDDQRLTERVRAKQSGKKNQVVKE--TPDTPSSRVRSSARFAEK 1068
            MTE +REMIL++RA +K D+  TE++R+K+   K  V K+  TP   S  +R+SAR A++
Sbjct: 119  MTEFQREMILAERADKKGDKNFTEKLRSKRENNKTPVSKKETTPLAASRGIRTSARSADR 178

Query: 1067 AAAKGDALNELRAKRLKQQDPEAHRKLIGATRGNSTARDSSPVRKKPVTTAXXXXXXXXX 888
            AAAK DALNELRAKR+KQQDP AH KL  A+ G S +RD S +++KP  ++         
Sbjct: 179  AAAKDDALNELRAKRMKQQDPGAHSKLRDASEGGSGSRDFSSIKRKPFASSNLSSSSQSD 238

Query: 887  XXXXXXXXXXXXXXXXXXXXXXXSNKEEITLEDIKEIIIRRSKLAKWFMEPFFEEVIVGC 708
                                    + +  T EDIKEI IRRSKLAKW MEPFFEE+IVGC
Sbjct: 239  GERSHSDEEGSTGDGGMLDSDDDMS-DVPTFEDIKEITIRRSKLAKWLMEPFFEELIVGC 297

Query: 707  FVRVGIGRKDNKAYYRLCIVKNVDATEPNKQYRLENKSTHKYLSVTWGR--SEARWQMAV 534
            FVRVGIGR  +   YRLC+VKNVD+T+P++ Y+LENK+THKYL+V WG   S ARWQMA+
Sbjct: 298  FVRVGIGRSKSGPIYRLCMVKNVDSTDPDRTYKLENKTTHKYLNVIWGNENSAARWQMAM 357

Query: 533  ISDSLPLEVEFNEWVKAMKKDGIRMPTRQDIQEKQEAIQKAVTFVYSSATVKQMLQEKKS 354
            +SD  PLE E+ +W++ +++   R+PT+QD+ EK+EAIQ+   FVYS+ TVKQMLQEKKS
Sbjct: 358  VSDGHPLEEEYRQWIREVERTNGRLPTKQDVSEKKEAIQRTNKFVYSAETVKQMLQEKKS 417

Query: 353  AASRPLNIAAEKERLRREIEVAESKRNKAEVERIQTRLQELEAMSKQAKEKDSRAVRLSE 174
            A+ RPLN+AAEK++LRRE++VA+SK ++A ++RI+ ++++LEA S+Q KE D +A+RL+E
Sbjct: 418  ASIRPLNVAAEKDKLRRELDVAQSKNDEAAIQRIKGKIKQLEA-SRQKKEVDKKALRLAE 476

Query: 173  MNKKNRAENFRNASEVKPVNTSLKAGEAGYDPFSRRWTMSRNYY 42
            MN+KNRAENF+NASE+KPVNTSLKAGEAGYDPFSRRWT S NYY
Sbjct: 477  MNRKNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSMNYY 520


>ref|XP_010418054.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Camelina
            sativa] gi|727507935|ref|XP_010430094.1| PREDICTED: RNA
            polymerase-associated protein RTF1 homolog [Camelina
            sativa]
          Length = 645

 Score =  520 bits (1338), Expect = e-144
 Identities = 287/538 (53%), Positives = 371/538 (68%), Gaps = 13/538 (2%)
 Frame = -1

Query: 1589 LENLLLEAAGRTGASGRNRHSRPPARRQRXXXXXXXXXXXXXXXXXXDPGYATRKPSGSQ 1410
            LENLLLEAAGRT ++GR+RHS PP+ R+R                  D G+A+RKPSGSQ
Sbjct: 4    LENLLLEAAGRTNSAGRSRHSHPPSSRRREGSYSDGSSDSRDDSDEEDRGFASRKPSGSQ 63

Query: 1409 VPLKKRLDSTDKDDARGSLGDDGEYRXXXXXXXXXXXXXXXXDLYKNDYDREQLAQMTEL 1230
            VPLKKRL++  +D A  + G  G+                  DLYKN+ DR++LA MTE 
Sbjct: 64   VPLKKRLEAEREDRAARNEGGYGD-GPSDHEGDSSEESDFGDDLYKNEEDRQKLAGMTEF 122

Query: 1229 EREMILSDRAQRKDDQRLTERVRAKQSGKKNQVVK-ETPDTPSSR-VRSSARFAEKAAAK 1056
            +REMIL++RA +K D+  TE++R+K+  +K  V K ET   P+SR VRSSAR A++AAAK
Sbjct: 123  QREMILAERADKKGDKNFTEKLRSKRENEKTPVSKKETQPLPASRGVRSSARSADRAAAK 182

Query: 1055 GDALNELRAKRLKQQDPEAHRKLIGATRGNSTARDSSPVRKKPVTTAXXXXXXXXXXXXX 876
             DALNELRAKR KQQDP A R L  A++G S +RD S +++KP+ ++             
Sbjct: 183  DDALNELRAKRKKQQDPAALRNLRDASKGGSGSRDFSSLKRKPLASSNLSNSSQSDSDSR 242

Query: 875  XXXXXXXXXXXXXXXXXXXSNKEEITLEDIKEIIIRRSKLAKWFMEPFFEEVIVGCFVRV 696
                                  +  T EDI++I IRRSKLAKW MEPFFEEVIVGCFVRV
Sbjct: 243  SQSDDEGSNAGMDSDDD---RSDMPTFEDIRDITIRRSKLAKWLMEPFFEEVIVGCFVRV 299

Query: 695  GIGRKDNKAYYRLCIVKNVDATEPNKQYRLENKSTHKYLSVTWGR--SEARWQMAVISDS 522
            GIGR  +   YRLC+V+NVDAT+P+K Y+LENKSTHKYL+V WG   S ARWQMA++SD 
Sbjct: 300  GIGRSKSGPIYRLCMVRNVDATDPDKTYKLENKSTHKYLNVIWGNETSAARWQMAMVSDG 359

Query: 521  LPLEVEFNEWVKAMKKDGIRMPTRQDIQEKQEAIQKAVTFVYSSATVKQMLQEKKSAASR 342
             PLE E+ +W++ +++   RMPT+QDI EK+EAIQ+  +FVYS+ TVKQMLQEKKSA+ R
Sbjct: 360  HPLEEEYRQWIREVERTNGRMPTKQDIAEKKEAIQRINSFVYSAETVKQMLQEKKSASIR 419

Query: 341  PLNIAAEKERLRREIEVAESKRNKAEVERIQTRLQELEAMSKQAKEKDSRAVRLSEMNKK 162
            P+N+AAEK+RLR+E+++AESK ++A VERI+T++++L+A S+  KE D +A++L+EMNKK
Sbjct: 420  PMNVAAEKDRLRKELDIAESKNDEAGVERIKTKIKQLDA-SRNKKEVDKKALKLAEMNKK 478

Query: 161  NRAENFRNASEVKPVNTSLKAGEAGYDPFSRRWTMSRNYY---------VSNAAAAAT 15
            NRAENF+NASEVK +  SLKAGEAGYDPFSRRWT S NYY           N AA AT
Sbjct: 479  NRAENFKNASEVKSITASLKAGEAGYDPFSRRWTRSSNYYNGKNKGKDGAENEAAVAT 536


>ref|XP_010473306.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Camelina
            sativa]
          Length = 641

 Score =  519 bits (1336), Expect = e-144
 Identities = 287/538 (53%), Positives = 371/538 (68%), Gaps = 13/538 (2%)
 Frame = -1

Query: 1589 LENLLLEAAGRTGASGRNRHSRPPARRQRXXXXXXXXXXXXXXXXXXDPGYATRKPSGSQ 1410
            LENLLLEAAGRT ++GR+RHS PP+ R+R                  D G+A+RKPSGSQ
Sbjct: 4    LENLLLEAAGRTNSAGRSRHSHPPSSRRREGSYSDGSSDSRDDSDEEDRGFASRKPSGSQ 63

Query: 1409 VPLKKRLDSTDKDDARGSLGDDGEYRXXXXXXXXXXXXXXXXDLYKNDYDREQLAQMTEL 1230
            VPLKKRL++  +D A  + G  G+                  DLYKN+ DR++LA MTE 
Sbjct: 64   VPLKKRLEAEREDRAARNEGGYGD-GPSDHEGDSSEESDFGDDLYKNEEDRQKLAGMTEF 122

Query: 1229 EREMILSDRAQRKDDQRLTERVRAKQSGKKNQVVK-ETPDTPSSR-VRSSARFAEKAAAK 1056
            +REMIL++RA +K D+  TE++R+K+  +K  V K ET   P+SR VRSSAR A++AAAK
Sbjct: 123  QREMILAERADKKGDKNFTEKLRSKRENEKTPVSKKETQPLPASRGVRSSARSADRAAAK 182

Query: 1055 GDALNELRAKRLKQQDPEAHRKLIGATRGNSTARDSSPVRKKPVTTAXXXXXXXXXXXXX 876
             DALNELRAKR KQQDP A R L  A++G S +RD S +++KP+ ++             
Sbjct: 183  DDALNELRAKRKKQQDPAALRNLRDASKGGSGSRDFSSLKRKPLASSNLSNSSQSDSDSR 242

Query: 875  XXXXXXXXXXXXXXXXXXXSNKEEITLEDIKEIIIRRSKLAKWFMEPFFEEVIVGCFVRV 696
                                  +  T EDI++I IRRSKLAKW MEPFFEEVIVGCFVRV
Sbjct: 243  SQSDDEGSNAGMDSDDD---RSDMPTFEDIRDITIRRSKLAKWLMEPFFEEVIVGCFVRV 299

Query: 695  GIGRKDNKAYYRLCIVKNVDATEPNKQYRLENKSTHKYLSVTWGR--SEARWQMAVISDS 522
            GIGR  +   YRLC+V+NVDAT+P+K Y+LENKSTHKYL+V WG   S ARWQMA+ISD 
Sbjct: 300  GIGRSKSGPIYRLCMVRNVDATDPDKTYKLENKSTHKYLNVIWGNETSAARWQMAMISDG 359

Query: 521  LPLEVEFNEWVKAMKKDGIRMPTRQDIQEKQEAIQKAVTFVYSSATVKQMLQEKKSAASR 342
             PLE E+ +W++ +++   RMPT+QDI EK+EAIQ+  +FVYS+ TVKQMLQEKKSA+ R
Sbjct: 360  HPLEEEYRQWIREVERTNGRMPTKQDIAEKKEAIQRINSFVYSAETVKQMLQEKKSASIR 419

Query: 341  PLNIAAEKERLRREIEVAESKRNKAEVERIQTRLQELEAMSKQAKEKDSRAVRLSEMNKK 162
            P+N+AAEK+RLR+E+E+A+SK ++A  ERI+T++++L+A S+  KE D++A++L+EMNKK
Sbjct: 420  PMNVAAEKDRLRKELEIAQSKNDEAGAERIKTKIKQLDA-SRNKKEVDTKALKLAEMNKK 478

Query: 161  NRAENFRNASEVKPVNTSLKAGEAGYDPFSRRWTMSRNYY---------VSNAAAAAT 15
            NRAENF+NASEVK +  SLKAGEAGYDPFSRRWT S NYY           N AA AT
Sbjct: 479  NRAENFKNASEVKSITASLKAGEAGYDPFSRRWTRSSNYYNGKNKGKDGAENEAAVAT 536


>ref|XP_002888111.1| At1g61040/T7P1_17 [Arabidopsis lyrata subsp. lyrata]
            gi|297333952|gb|EFH64370.1| At1g61040/T7P1_17
            [Arabidopsis lyrata subsp. lyrata]
          Length = 643

 Score =  512 bits (1319), Expect = e-142
 Identities = 289/547 (52%), Positives = 371/547 (67%), Gaps = 20/547 (3%)
 Frame = -1

Query: 1589 LENLLLEAAGRTGASGRNRHSRPPARRQRXXXXXXXXXXXXXXXXXXDPGYATRKPSGSQ 1410
            LENLLLEAAGRT ++GR+RH  PP+ R+R                    GYA+RKPSGSQ
Sbjct: 4    LENLLLEAAGRTNSAGRSRH--PPSSRRREGSYSDGSSDSRDDSDEDR-GYASRKPSGSQ 60

Query: 1409 VPLKKRLDSTDKDDA---RGSLGDDGEYRXXXXXXXXXXXXXXXXDLYKNDYDREQLAQM 1239
            VPLKKRL++  +D A    G  GD    R                 LYKN+ DR++LA M
Sbjct: 61   VPLKKRLEAEREDRAARVEGGYGDGPSDREGDSSEESDFGDD----LYKNEEDRQKLAGM 116

Query: 1238 TELEREMILSDRAQRKDDQRLTERVRAKQSGKKNQVVK-ETPDTPSSR-VRSSARFAEKA 1065
            TE +REMIL++RA +K D+  TE++R+K+  +K  V K ET   P+SR VRSSAR A++A
Sbjct: 117  TEFQREMILAERADKKGDKNFTEKLRSKRENEKTPVSKKETQPLPASRGVRSSARSADRA 176

Query: 1064 AAKGDALNELRAKRLKQQDPEAHRKLIGATRGNSTARDSSPVRKKPVTTAXXXXXXXXXX 885
            AAK DALNELRAKR+KQQDP A RKL  A++G S +RD S +++KP+ ++          
Sbjct: 177  AAKDDALNELRAKRMKQQDPAALRKLRDASKGGSGSRDFSSMKRKPLASSNLSSSSQSDS 236

Query: 884  XXXXXXXXXXXXXXXXXXXXXXSNKEEITLEDIKEIIIRRSKLAKWFMEPFFEEVIVGCF 705
                                     +  T ED+KEI IRRSKLAKW MEPFFEE+IVGCF
Sbjct: 237  DSRSQSDDEGSNAGMLDSDDD--RSDVPTFEDVKEITIRRSKLAKWLMEPFFEELIVGCF 294

Query: 704  VRVGIGRKDNKAYYRLCIVKNVDATEPNKQYRLENKSTHKYLSVTWGR--SEARWQMAVI 531
            VRVGIGR  +   YRLC VKNVDAT+P+K Y+LENK+THKYL+V WG   S ARWQMA+I
Sbjct: 295  VRVGIGRSKSGPIYRLCWVKNVDATDPDKTYKLENKTTHKYLNVVWGNETSAARWQMAMI 354

Query: 530  SDSLPLEVEFNEWVKAMKKDGIRMPTRQDIQEKQEAIQKAVTFVYSSATVKQMLQEKKSA 351
            SD  PLE E+ +W++ +++   RMPT+QDI EK+EAIQ+  +FVYS+ TVKQMLQEKKSA
Sbjct: 355  SDGHPLEEEYRQWIREVERTNGRMPTKQDISEKKEAIQRINSFVYSAETVKQMLQEKKSA 414

Query: 350  ASRPLNIAAEKERLRREIEVAESKRNKAEVERIQTRLQELEAMSKQAKEKDSRAVRLSEM 171
            + RP+N+AAEK+RLR+E+E+A+SK ++A VERI+T++++L+A S+  K  D +A++L+EM
Sbjct: 415  SVRPMNVAAEKDRLRKELEIAQSKNDEAGVERIKTKIKQLDA-SRNKKGVDKKALKLAEM 473

Query: 170  NKKNRAENFRNASEVKPVNTSLKAGEAGYDPFSRRWTMSRNYY-------------VSNA 30
            NKKNRAENF+NASEVK ++ SLKAGEAGYDPFSRRWT S NYY              + A
Sbjct: 474  NKKNRAENFKNASEVKSISASLKAGEAGYDPFSRRWTRSSNYYNGKNKGKDGEENETAVA 533

Query: 29   AAAATNG 9
            AA  TNG
Sbjct: 534  AAVETNG 540


>ref|XP_006392066.1| hypothetical protein EUTSA_v10023338mg [Eutrema salsugineum]
            gi|557088572|gb|ESQ29352.1| hypothetical protein
            EUTSA_v10023338mg [Eutrema salsugineum]
          Length = 644

 Score =  512 bits (1318), Expect = e-142
 Identities = 287/545 (52%), Positives = 369/545 (67%), Gaps = 18/545 (3%)
 Frame = -1

Query: 1589 LENLLLEAAGRTGASGRNRHSRPPARRQRXXXXXXXXXXXXXXXXXXDPGYATRKPSGSQ 1410
            L++LLLEAAGRT A GR+RHS PP+ R+R                    GYA+RKPSGSQ
Sbjct: 4    LDDLLLEAAGRTNAPGRSRHSHPPSSRRREGSYSDGGSDSRDDSDEER-GYASRKPSGSQ 62

Query: 1409 VPLKKRLDSTDKDDA---RGSLGDDGEYRXXXXXXXXXXXXXXXXDLYKNDYDREQLAQM 1239
            VPLKKRL++  +D A       GD    R                 LYKN+ DR++LA M
Sbjct: 63   VPLKKRLEAEREDRAARDEAGYGDGPSDREGDSSEESDFGDD----LYKNEEDRQKLAGM 118

Query: 1238 TELEREMILSDRAQRKDDQRLTERVRAKQSGKKNQVVK-ETPDTPSSR-VRSSARFAEKA 1065
            TE +REMIL++RA +K D+  TE++R+K+  +K  V K ET   P+SR VRSSAR A++A
Sbjct: 119  TEFQREMILAERADKKGDKNFTEKLRSKREKEKTPVSKKETQPLPASRGVRSSARSADRA 178

Query: 1064 AAKGDALNELRAKRLKQQDPEAHRKLIGATRGNSTARDSSPVRKKPVTTAXXXXXXXXXX 885
            AAK DALNELRAKR+KQQ+P + RKL  A++G S +RD S +++KP+ ++          
Sbjct: 179  AAKDDALNELRAKRMKQQEPASLRKLRDASKGGSGSRDFSSMKRKPLASSNLSNSSQSDS 238

Query: 884  XXXXXXXXXXXXXXXXXXXXXXSNKEEITLEDIKEIIIRRSKLAKWFMEPFFEEVIVGCF 705
                                     +  T EDIK+I IRRSKLAKW MEPFFEE+IVGCF
Sbjct: 239  DSRSQSDDEGSNGGMVDSDDD--RSDVPTFEDIKDITIRRSKLAKWLMEPFFEELIVGCF 296

Query: 704  VRVGIGRKDNKAYYRLCIVKNVDATEPNKQYRLENKSTHKYLSVTWGR--SEARWQMAVI 531
            VRVGIGR  N   YRLC+VKNVDAT+P+K Y+LENK+THKYL+  WG   S ARWQMA+I
Sbjct: 297  VRVGIGRSKNGPIYRLCMVKNVDATDPDKTYKLENKTTHKYLNCIWGHESSAARWQMAMI 356

Query: 530  SDSLPLEVEFNEWVKAMKKDGIRMPTRQDIQEKQEAIQKAVTFVYSSATVKQMLQEKKSA 351
            SD  PLE E+ +W++ +++   RMPT+QDI EK+EAI++  +FVYS+ TVKQMLQEKKSA
Sbjct: 357  SDGYPLEEEYRQWIREVERTNGRMPTKQDISEKKEAIKRINSFVYSAETVKQMLQEKKSA 416

Query: 350  ASRPLNIAAEKERLRREIEVAESKRNKAEVERIQTRLQELEAMSKQAKEKDSRAVRLSEM 171
            + RP+NIAAEK+RLR+E+EVA+ K ++A VERI+ ++++LEA S++ KE D +A++L+EM
Sbjct: 417  SVRPMNIAAEKDRLRKELEVAQIKNDEAGVERIKAKIKQLEA-SREKKEVDKKALKLAEM 475

Query: 170  NKKNRAENFRNASEVKPVNTSLKAGEAGYDPFSRRWTMSRNYY-----------VSNAAA 24
            NKKNRAENF+NASEVK +  SLKAGEAGYDPFSRRWT S NYY            + AAA
Sbjct: 476  NKKNRAENFKNASEVKSITASLKAGEAGYDPFSRRWTRSSNYYNGKRKEGGDTEATAAAA 535

Query: 23   AATNG 9
              TNG
Sbjct: 536  VETNG 540


>ref|NP_176299.1| Paf1C-like transcription factor [Arabidopsis thaliana]
            gi|75169645|sp|Q9C950.1|VIP5_ARATH RecName: Full=Protein
            RTF1 homolog; AltName: Full=Protein VERNALIZATION
            INDEPENDENCE 5 gi|12323334|gb|AAG51642.1|AC018908_8
            unknown protein; 78902-80833 [Arabidopsis thaliana]
            gi|332195649|gb|AEE33770.1| Paf1C-like transcription
            factor [Arabidopsis thaliana]
          Length = 643

 Score =  511 bits (1316), Expect = e-142
 Identities = 288/547 (52%), Positives = 369/547 (67%), Gaps = 20/547 (3%)
 Frame = -1

Query: 1589 LENLLLEAAGRTGASGRNRHSRPPARRQRXXXXXXXXXXXXXXXXXXDPGYATRKPSGSQ 1410
            LENLLLEAAGRT ++GR+RH  PP+ R+R                    GYA+RKPSGSQ
Sbjct: 4    LENLLLEAAGRTNSAGRSRH--PPSSRRREGSYSDGSSDSRDDSDEDR-GYASRKPSGSQ 60

Query: 1409 VPLKKRLDSTDKDDA---RGSLGDDGEYRXXXXXXXXXXXXXXXXDLYKNDYDREQLAQM 1239
            VPLKKRL++  +D A    G  GD    R                 LYKN+ DR++LA M
Sbjct: 61   VPLKKRLEAEREDRAARVEGGYGDGPSDREGDSSEESDFGDD----LYKNEEDRQKLAGM 116

Query: 1238 TELEREMILSDRAQRKDDQRLTERVRAKQSGKKNQVVK-ETPDTPSSR-VRSSARFAEKA 1065
            TE +REMILS+RA +K D+  TE++R+K+  +K  V K ET   P+SR VRSSAR A++A
Sbjct: 117  TEFQREMILSERADKKGDKNFTEKLRSKRESEKTPVSKKETQPLPASRGVRSSARSADRA 176

Query: 1064 AAKGDALNELRAKRLKQQDPEAHRKLIGATRGNSTARDSSPVRKKPVTTAXXXXXXXXXX 885
            AAK DALNELRAKR+KQQDP A RKL  A++G S +RD S  ++KP+ ++          
Sbjct: 177  AAKDDALNELRAKRMKQQDPAALRKLRDASKGGSGSRDFSSTKRKPLASSNLSSSSQSDS 236

Query: 884  XXXXXXXXXXXXXXXXXXXXXXSNKEEITLEDIKEIIIRRSKLAKWFMEPFFEEVIVGCF 705
                                     +  T ED+KE+ IRRSKLAKW MEPFFEE+IVGCF
Sbjct: 237  DSRSQSDDEGSNGGMLDSDDD--RSDVPTFEDVKEVTIRRSKLAKWLMEPFFEELIVGCF 294

Query: 704  VRVGIGRKDNKAYYRLCIVKNVDATEPNKQYRLENKSTHKYLSVTWGR--SEARWQMAVI 531
            VRVGIGR  +   YRLC VKNVDAT+P+K Y+LENK+THKYL+V WG   S ARWQMA+I
Sbjct: 295  VRVGIGRSKSGPIYRLCWVKNVDATDPDKTYKLENKTTHKYLNVVWGNETSAARWQMAMI 354

Query: 530  SDSLPLEVEFNEWVKAMKKDGIRMPTRQDIQEKQEAIQKAVTFVYSSATVKQMLQEKKSA 351
            SD  PLE E+ +W++ +++   RMPT+QDI EK+EAIQ+  +FVYS+ TVKQMLQEKKSA
Sbjct: 355  SDGHPLEEEYRQWIREVERTNGRMPTKQDISEKKEAIQRTNSFVYSAETVKQMLQEKKSA 414

Query: 350  ASRPLNIAAEKERLRREIEVAESKRNKAEVERIQTRLQELEAMSKQAKEKDSRAVRLSEM 171
            + RP+N+AAEK+RLR+E+E+A+SK ++A VERI++++++L+A S+  K  D +A++L+EM
Sbjct: 415  SVRPMNVAAEKDRLRKELEIAQSKNDEAGVERIKSKIKQLDA-SRNKKGVDKKALKLAEM 473

Query: 170  NKKNRAENFRNASEVKPVNTSLKAGEAGYDPFSRRWTMSRNYY-------------VSNA 30
            NKKNRAENF+NASEVK +  SLKAGEAGYDPFSRRWT S NYY              + A
Sbjct: 474  NKKNRAENFKNASEVKSITASLKAGEAGYDPFSRRWTRSSNYYNGKNKGKDGEENEAAVA 533

Query: 29   AAAATNG 9
            AA  TNG
Sbjct: 534  AAVETNG 540


>ref|XP_006300844.1| hypothetical protein CARUB_v10019938mg [Capsella rubella]
            gi|482569554|gb|EOA33742.1| hypothetical protein
            CARUB_v10019938mg [Capsella rubella]
          Length = 644

 Score =  509 bits (1312), Expect = e-141
 Identities = 283/544 (52%), Positives = 370/544 (68%), Gaps = 17/544 (3%)
 Frame = -1

Query: 1589 LENLLLEAAGRTGASGRNRHSRPPARRQRXXXXXXXXXXXXXXXXXXDPGYATRKPSGSQ 1410
            LENLLLEAAGRT  +G++RHS PP+ R+R                    G+A+RKPSGSQ
Sbjct: 4    LENLLLEAAGRTNPAGKSRHSHPPSSRRREGSYSDGSSDSRDDSDDDR-GFASRKPSGSQ 62

Query: 1409 VPLKKRLDSTDKDDARGSLGDDGEYRXXXXXXXXXXXXXXXXDLYKNDYDREQLAQMTEL 1230
            VPLKKRL++  +D A  +    G+                  DLYKN+ DR++LA MTE 
Sbjct: 63   VPLKKRLEAEREDRAARNESGYGD-GPSDREGDSSEESDFGDDLYKNEEDRQKLAGMTEF 121

Query: 1229 EREMILSDRAQRKDDQRLTERVRAKQSGKKNQVVK-ETPDTPSSR-VRSSARFAEKAAAK 1056
            +REMIL++RA +K D+  TE++R+K+  +K  V K ET   P+SR VRSSAR A++AAAK
Sbjct: 122  QREMILAERADKKGDKNFTEKLRSKRENEKTPVSKKETQPLPASRGVRSSARSADRAAAK 181

Query: 1055 GDALNELRAKRLKQQDPEAHRKLIGATRGNSTARDSSPVRKKPVTTAXXXXXXXXXXXXX 876
             DALNELRAKR+KQQDP A RKL  A++G S +RD S +++KP+ ++             
Sbjct: 182  DDALNELRAKRMKQQDPAALRKLRDASKGGSGSRDFSSLKRKPLASSNLSNSSQSDSDSR 241

Query: 875  XXXXXXXXXXXXXXXXXXXSNKEEITLEDIKEIIIRRSKLAKWFMEPFFEEVIVGCFVRV 696
                                  +  T EDIKEI IRRSKLAKW MEPFFEE+IVGCFVRV
Sbjct: 242  SQSDDEGSNAGLDSDDD---RSDMPTFEDIKEITIRRSKLAKWLMEPFFEELIVGCFVRV 298

Query: 695  GIGRKDNKAYYRLCIVKNVDATEPNKQYRLENKSTHKYLSVTWGR--SEARWQMAVISDS 522
            GIGR  +   YRLC+V+NVDAT+P+K Y+LENK+THKYL+V WG   S ARWQMA+ISD 
Sbjct: 299  GIGRSKSGPIYRLCMVRNVDATDPDKTYKLENKTTHKYLNVIWGNETSAARWQMAMISDG 358

Query: 521  LPLEVEFNEWVKAMKKDGIRMPTRQDIQEKQEAIQKAVTFVYSSATVKQMLQEKKSAASR 342
             PLE E+ +W++ +++   RMPT+QDI EK+EAI++  +F+YS+ TVKQMLQEKKSA+ R
Sbjct: 359  HPLEEEYRQWIREVERTNGRMPTKQDISEKKEAIKRINSFIYSAETVKQMLQEKKSASVR 418

Query: 341  PLNIAAEKERLRREIEVAESKRNKAEVERIQTRLQELEAMSKQAKEKDSRAVRLSEMNKK 162
            P+N+AAEK+RLR+E+E+A+SK ++A VERI+T++++L+A S+  K  D +A++L+EMNKK
Sbjct: 419  PMNVAAEKDRLRKELEIAQSKNDEAGVERIKTKIKQLDA-SRNKKGVDKKALKLAEMNKK 477

Query: 161  NRAENFRNASEVKPVNTSLKAGEAGYDPFSRRWTMSRNYY-------------VSNAAAA 21
            NRAENF+NASEVK +  SLK GEAGYDPFSRRWT S NYY              + AAA 
Sbjct: 478  NRAENFKNASEVKSITASLKVGEAGYDPFSRRWTRSSNYYNGKNKGKEGAENEAAVAAAV 537

Query: 20   ATNG 9
             TNG
Sbjct: 538  ETNG 541


>gb|AAM10312.1| At1g61040/T7P1_17 [Arabidopsis thaliana]
          Length = 643

 Score =  509 bits (1310), Expect = e-141
 Identities = 287/547 (52%), Positives = 368/547 (67%), Gaps = 20/547 (3%)
 Frame = -1

Query: 1589 LENLLLEAAGRTGASGRNRHSRPPARRQRXXXXXXXXXXXXXXXXXXDPGYATRKPSGSQ 1410
            LENLLLEAAGRT ++GR+ H  PP+ R+R                    GYA+RKPSGSQ
Sbjct: 4    LENLLLEAAGRTNSAGRSSH--PPSSRRREGSYSDGSSDSRDDSDEDR-GYASRKPSGSQ 60

Query: 1409 VPLKKRLDSTDKDDA---RGSLGDDGEYRXXXXXXXXXXXXXXXXDLYKNDYDREQLAQM 1239
            VPLKKRL++  +D A    G  GD    R                 LYKN+ DR++LA M
Sbjct: 61   VPLKKRLEAEREDRAARVEGGYGDGPSDREGDSSEESDFGDD----LYKNEEDRQKLAGM 116

Query: 1238 TELEREMILSDRAQRKDDQRLTERVRAKQSGKKNQVVK-ETPDTPSSR-VRSSARFAEKA 1065
            TE +REMILS+RA +K D+  TE++R+K+  +K  V K ET   P+SR VRSSAR A++A
Sbjct: 117  TEFQREMILSERADKKGDKNFTEKLRSKRESEKTPVSKKETQPLPASRGVRSSARSADRA 176

Query: 1064 AAKGDALNELRAKRLKQQDPEAHRKLIGATRGNSTARDSSPVRKKPVTTAXXXXXXXXXX 885
            AAK DALNELRAKR+KQQDP A RKL  A++G S +RD S  ++KP+ ++          
Sbjct: 177  AAKDDALNELRAKRMKQQDPAALRKLRDASKGGSGSRDFSSTKRKPLASSNLSSSSQSDS 236

Query: 884  XXXXXXXXXXXXXXXXXXXXXXSNKEEITLEDIKEIIIRRSKLAKWFMEPFFEEVIVGCF 705
                                     +  T ED+KE+ IRRSKLAKW MEPFFEE+IVGCF
Sbjct: 237  DSRSQSDDEGSNGGMLDSDDD--RSDVPTFEDVKEVTIRRSKLAKWLMEPFFEELIVGCF 294

Query: 704  VRVGIGRKDNKAYYRLCIVKNVDATEPNKQYRLENKSTHKYLSVTWGR--SEARWQMAVI 531
            VRVGIGR  +   YRLC VKNVDAT+P+K Y+LENK+THKYL+V WG   S ARWQMA+I
Sbjct: 295  VRVGIGRSKSGPIYRLCWVKNVDATDPDKTYKLENKTTHKYLNVVWGNETSAARWQMAMI 354

Query: 530  SDSLPLEVEFNEWVKAMKKDGIRMPTRQDIQEKQEAIQKAVTFVYSSATVKQMLQEKKSA 351
            SD  PLE E+ +W++ +++   RMPT+QDI EK+EAIQ+  +FVYS+ TVKQMLQEKKSA
Sbjct: 355  SDGHPLEEEYRQWIREVERTNGRMPTKQDISEKKEAIQRTNSFVYSAETVKQMLQEKKSA 414

Query: 350  ASRPLNIAAEKERLRREIEVAESKRNKAEVERIQTRLQELEAMSKQAKEKDSRAVRLSEM 171
            + RP+N+AAEK+RLR+E+E+A+SK ++A VERI++++++L+A S+  K  D +A++L+EM
Sbjct: 415  SVRPMNVAAEKDRLRKELEIAQSKNDEAGVERIKSKIKQLDA-SRNKKGVDKKALKLAEM 473

Query: 170  NKKNRAENFRNASEVKPVNTSLKAGEAGYDPFSRRWTMSRNYY-------------VSNA 30
            NKKNRAENF+NASEVK +  SLKAGEAGYDPFSRRWT S NYY              + A
Sbjct: 474  NKKNRAENFKNASEVKSITASLKAGEAGYDPFSRRWTRSSNYYNGKNKGKDGEENEAAVA 533

Query: 29   AAAATNG 9
            AA  TNG
Sbjct: 534  AAVETNG 540