BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Aconitum23_contig00005794
         (3700 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010273705.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1322   0.0  
ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1271   0.0  
gb|KDO62286.1| hypothetical protein CISIN_1g001795mg [Citrus sin...  1244   0.0  
gb|KDO62285.1| hypothetical protein CISIN_1g001795mg [Citrus sin...  1244   0.0  
ref|XP_006474044.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1244   0.0  
ref|XP_007013877.1| DNA/RNA polymerases superfamily protein isof...  1243   0.0  
ref|XP_011069583.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1242   0.0  
ref|XP_009366215.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1241   0.0  
ref|XP_006453566.1| hypothetical protein CICLE_v10007333mg [Citr...  1239   0.0  
ref|XP_007203225.1| hypothetical protein PRUPE_ppa000868mg [Prun...  1237   0.0  
ref|XP_011033373.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1236   0.0  
ref|XP_011018068.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1236   0.0  
ref|XP_002325119.1| DNA-directed RNA polymerase family protein [...  1235   0.0  
ref|XP_012445978.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1234   0.0  
ref|XP_008243031.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1234   0.0  
gb|EYU37150.1| hypothetical protein MIMGU_mgv1a000925mg [Erythra...  1231   0.0  
ref|XP_004287148.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1231   0.0  
ref|XP_012837864.1| PREDICTED: DNA-directed RNA polymerase 3B, c...  1230   0.0  
ref|XP_002308414.1| hypothetical protein POPTR_0006s19490g [Popu...  1230   0.0  
ref|XP_007013878.1| DNA/RNA polymerases superfamily protein isof...  1228   0.0  

>ref|XP_010273705.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic isoform X1
            [Nelumbo nucifera]
          Length = 956

 Score = 1322 bits (3421), Expect = 0.0
 Identities = 660/903 (73%), Positives = 736/903 (81%), Gaps = 14/903 (1%)
 Frame = -3

Query: 3497 STSLQT-----HTLSESVSLDNRVFTEDPPWMASFLSSNHTN---------HKLALHDME 3360
            S  LQT     H L    S+  RVF +DPPW++S LS+ +            +  L DME
Sbjct: 55   SMKLQTITNGVHRLLNGESI-GRVFYDDPPWISSVLSARNLKGLEEGFGDGERGRLRDME 113

Query: 3359 RKKHALLRRRQVKAETEAWERTAQEYREFEREMCQNKLAPCLPYVKSLFLGWFEPLKQAI 3180
            ++K+  LRRRQ+K ETEAWE+TA EYRE EREMC+ KLAP LPYVKSLFLGWFEPL++AI
Sbjct: 114  KRKYNALRRRQIKVETEAWEKTAAEYRELEREMCEKKLAPNLPYVKSLFLGWFEPLREAI 173

Query: 3179 XXXXXXXXXXXXXXXXXXXXXXXXADKMAVIVMHKMMGLLMIGQDDACVRVVQAAIHIGE 3000
                                    ADKMAVIVMHKMMGLLM GQ++  VRVVQAA+HIGE
Sbjct: 174  EKEQKLQESKKQKAAYAPYIGLLPADKMAVIVMHKMMGLLMTGQEEGYVRVVQAAVHIGE 233

Query: 2999 AIEQEVRIHNFLERTKKFRNRKKIEDDEHESVRKNQEILRXXXXXXXXXXXXXXXXXXXK 2820
            AIEQEVRIHNFL++TKK++  KKIE    + V K Q+ILR                   K
Sbjct: 234  AIEQEVRIHNFLKKTKKYQGGKKIEGQGDDKVTKEQDILRKRVNILVKKKKLIEVQKLVK 293

Query: 2819 SEDGTMSWGRDAQAKLGSRLIELLIETAFVQPPANQLPDDPPEIRPAFRHTFKTMVKEPG 2640
            +E+    WGRDAQAKLGSRLIELL ETA+VQPP NQL D P EIRPAFRHTF+T+ KE G
Sbjct: 294  NENEIRPWGRDAQAKLGSRLIELLTETAYVQPPINQLGDSPREIRPAFRHTFRTLSKETG 353

Query: 2639 RKGGNRYGVIDCDSLVRQGLDRTARHMVIPYVPMLIPPRKWKGYERGGHLFLPSYVMRTH 2460
            R+ G RYGVI+CD LV +GLDRTARHMVIPYVPMLIPP+KWKGY++GGHLFLPSYVMRTH
Sbjct: 354  RRVGKRYGVIECDPLVGRGLDRTARHMVIPYVPMLIPPKKWKGYDKGGHLFLPSYVMRTH 413

Query: 2459 GARQQQDAIKSVPIKQMQKVFEALDTLGQTKWRVNKRVLVVVEDFWKKGGNVAGLVNRED 2280
            GA++QQDAIK+VP KQMQKVFEALDTLG+TKWRVN++VL VVE  W +GGN+AGLV+RED
Sbjct: 414  GAKRQQDAIKNVPGKQMQKVFEALDTLGRTKWRVNRKVLGVVESIWARGGNMAGLVDRED 473

Query: 2279 VAVPEKPLSEDAMEIQKWKWSVRKVKKCNRERHAQRCDIELKLSVARRMKNEEGFYYPHN 2100
            + +PEKP SED +E+QKWKW++RK KK NRERHAQRCDIELKLSVAR++K+EEGFYYPHN
Sbjct: 474  IPIPEKPDSEDLIEMQKWKWNMRKTKKINRERHAQRCDIELKLSVARKIKDEEGFYYPHN 533

Query: 2099 LDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLQWLKIHLSNLYGGGVEKLSYD 1920
            LDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGK+GL+WLKIHL+NLY GGV+KLSYD
Sbjct: 534  LDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKAGLRWLKIHLANLYAGGVDKLSYD 593

Query: 1919 GRLTFVENHLNDILDSADKPVDGKRWWLNAEDPFQCLAACINLSEALKSSAPYTVLSHLP 1740
             RL FVENHL+DI DSADKP+DG RWWLNAEDPFQCLAACINLSEALKSS+P+T +SHLP
Sbjct: 594  DRLDFVENHLDDIFDSADKPIDGNRWWLNAEDPFQCLAACINLSEALKSSSPHTAISHLP 653

Query: 1739 IHQDGSCNGLQHYAALGRDSXXXXXXXXXXXERPADVYSEIAARVLDIMKRDCKKDPAID 1560
            IHQDGSCNGLQHYAALGR             E+PADVYSEIAARV  IMK D +KDP  D
Sbjct: 654  IHQDGSCNGLQHYAALGRYQLEAAAVNLVAGEKPADVYSEIAARVHSIMKMDAEKDPTTD 713

Query: 1559 PVAVLAKVLIGQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEERGEITDDRLLFGAACY 1380
            P A+LAKVLI QVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEE+G IT+DRLLF AACY
Sbjct: 714  PTALLAKVLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGHITNDRLLFSAACY 773

Query: 1379 AAKVTLTALGEMFQAARGIMGWLGECAKIIASENQPVRWTTPLGLPVVQPYRKSERHLIR 1200
            AAKVTLTAL EMFQAAR IMGWL +CAK+IASENQPVRWTTPLGLPVVQPY K +RHL+R
Sbjct: 774  AAKVTLTALEEMFQAARSIMGWLSDCAKVIASENQPVRWTTPLGLPVVQPYLKPQRHLVR 833

Query: 1199 TSLQVLALQREGDFVEVKRQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWT 1020
            TSLQVLALQREGD VEVKRQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWT
Sbjct: 834  TSLQVLALQREGDLVEVKRQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWT 893

Query: 1019 HACDVDEMNQILREKFIELYSVPILDKLLESFQTSXXXXXXXXXPDRGDFDLKHVLDSPY 840
            HACDVD MNQILREKF+ELY +PIL++LLESFQ S         PDRGDFDLK VL+SPY
Sbjct: 894  HACDVDRMNQILREKFVELYDMPILERLLESFQVSFPLLTFPPLPDRGDFDLKEVLESPY 953

Query: 839  FFN 831
            FFN
Sbjct: 954  FFN 956


>ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Vitis
            vinifera]
          Length = 979

 Score = 1271 bits (3290), Expect = 0.0
 Identities = 637/928 (68%), Positives = 738/928 (79%), Gaps = 12/928 (1%)
 Frame = -3

Query: 3578 AQFYHQWKHGIHISVKSQRCNRL-ISCHSTSLQTHTLSESVSLDN---RVFTEDPPWMAS 3411
            + F H +    H S    +C+ L +S  + S++T   S ++ +     R+F +DPPW++S
Sbjct: 55   SSFRHNFHSPSHSSNSEAQCHALPLSPTNNSIETLQDSSNIQVKESIPRIFVQDPPWISS 114

Query: 3410 FLSSNHT--------NHKLALHDMERKKHALLRRRQVKAETEAWERTAQEYREFEREMCQ 3255
            FL  +          N KL   + ER+ + LLRRRQVKAETEAWER  +EYRE EREMC+
Sbjct: 115  FLFHDWCERNRRTGQNVKLEFRETERRNYGLLRRRQVKAETEAWERMVEEYREIEREMCE 174

Query: 3254 NKLAPCLPYVKSLFLGWFEPLKQAIXXXXXXXXXXXXXXXXXXXXXXXXADKMAVIVMHK 3075
             KLAP LPYVK+LFLGWFEPL++AI                        ADKMAVIVMHK
Sbjct: 175  KKLAPNLPYVKALFLGWFEPLREAIDKEQRAQRTKKQKAAYAPHIELLPADKMAVIVMHK 234

Query: 3074 MMGLLMIGQDDACVRVVQAAIHIGEAIEQEVRIHNFLERTKKFRNRKKIEDDEHESVRKN 2895
            MMGL+M+G ++ CVRVVQAA+ IG AIEQEVRIH+FLE+TK F   K +   + E +R+ 
Sbjct: 235  MMGLVMMGHEEGCVRVVQAAVQIGMAIEQEVRIHSFLEKTKNFERHKTVGHSQ-EGLRE- 292

Query: 2894 QEILRXXXXXXXXXXXXXXXXXXXKSEDGTMSWGRDAQAKLGSRLIELLIETAFVQPPAN 2715
            +EILR                   K+E+ T  WGRD QAKLGSRLIELL ETA+VQ P N
Sbjct: 293  KEILRKRVKSFIRKKKIIEVQKLVKNEEIT-PWGRDTQAKLGSRLIELLTETAYVQTPVN 351

Query: 2714 QLPDDPPEIRPAFRHTFKTMVKEPGRKGGNRYGVIDCDSLVRQGLDRTARHMVIPYVPML 2535
            Q  D PP++RPAFRHTFKT+ KE G+K   +YGVI+CD LV  GLDRTA+HMVIPYVPML
Sbjct: 352  QSADCPPDVRPAFRHTFKTVTKESGQKDWRKYGVIECDPLVLIGLDRTAKHMVIPYVPML 411

Query: 2534 IPPRKWKGYERGGHLFLPSYVMRTHGARQQQDAIKSVPIKQMQKVFEALDTLGQTKWRVN 2355
            IPP+KWKGY++GG+LFLPSYVMRTHG+R+QQDA+KSVP +Q+QKVFEALDTLG TKWR+N
Sbjct: 412  IPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQDAVKSVPRRQLQKVFEALDTLGNTKWRIN 471

Query: 2354 KRVLVVVEDFWKKGGNVAGLVNREDVAVPEKPLSEDAMEIQKWKWSVRKVKKCNRERHAQ 2175
            +RVL VVE  W +GGN+ GLV+RE+V +PEKP +ED  EIQ WKW+ RK KK N+ERH+ 
Sbjct: 472  RRVLSVVESIWARGGNLGGLVDRENVPLPEKPSTEDLTEIQNWKWNARKAKKINQERHSL 531

Query: 2174 RCDIELKLSVARRMKNEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLG 1995
            RCD E+KLSVAR+MK+EEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLG
Sbjct: 532  RCDTEIKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLG 591

Query: 1994 KSGLQWLKIHLSNLYGGGVEKLSYDGRLTFVENHLNDILDSADKPVDGKRWWLNAEDPFQ 1815
            KSGL+WLKI L+NLY GGVEKLSYDGRL FV+NHL+D+ DSAD P++G RWWL AEDPFQ
Sbjct: 592  KSGLRWLKIQLANLYAGGVEKLSYDGRLAFVDNHLDDVFDSADNPLNGNRWWLTAEDPFQ 651

Query: 1814 CLAACINLSEALKSSAPYTVLSHLPIHQDGSCNGLQHYAALGRDSXXXXXXXXXXXERPA 1635
            CLAACINLSEAL+SS+P+TV+SHLPIHQDGSCNGLQHYAALGR+S           E+PA
Sbjct: 652  CLAACINLSEALRSSSPHTVISHLPIHQDGSCNGLQHYAALGRNSLEASAVNLVAGEKPA 711

Query: 1634 DVYSEIAARVLDIMKRDCKKDPAIDPVAVLAKVLIGQVDRKLVKQTVMTSVYGVTYVGAR 1455
            DVYSEIAARV +IMKRD  KDPA DP A+LAKVLIGQVDRKLVKQTVMTSVYGVTY+GAR
Sbjct: 712  DVYSEIAARVHEIMKRDSNKDPATDPKALLAKVLIGQVDRKLVKQTVMTSVYGVTYIGAR 771

Query: 1454 EQIKRRLEERGEITDDRLLFGAACYAAKVTLTALGEMFQAARGIMGWLGECAKIIASENQ 1275
            EQIKRRL E+G ITD+RLLF AACYAAKVTL ALGE+FQAAR IM WLGECAK+IASENQ
Sbjct: 772  EQIKRRLAEKGLITDERLLFTAACYAAKVTLAALGEIFQAARDIMAWLGECAKVIASENQ 831

Query: 1274 PVRWTTPLGLPVVQPYRKSERHLIRTSLQVLALQREGDFVEVKRQRTAFPPNFVHSLDGS 1095
            PV+WTTPLGLPV+QPY KSERHLIRTSLQVLALQREG  V +++QRTAFPPNFVHSLDGS
Sbjct: 832  PVQWTTPLGLPVIQPYCKSERHLIRTSLQVLALQREGSVVVIRKQRTAFPPNFVHSLDGS 891

Query: 1094 HMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQILREKFIELYSVPILDKLLESFQTS 915
            HMMMTAVACRDAGL FAGVHDSFWTHACDVD+MNQILREKF+ELYS+PIL+ LLESFQTS
Sbjct: 892  HMMMTAVACRDAGLCFAGVHDSFWTHACDVDKMNQILREKFVELYSMPILENLLESFQTS 951

Query: 914  XXXXXXXXXPDRGDFDLKHVLDSPYFFN 831
                     PDRG+FDL+ VL+SPYFFN
Sbjct: 952  HPTLTFPPLPDRGNFDLREVLESPYFFN 979


>gb|KDO62286.1| hypothetical protein CISIN_1g001795mg [Citrus sinensis]
            gi|641843387|gb|KDO62287.1| hypothetical protein
            CISIN_1g001795mg [Citrus sinensis]
          Length = 1012

 Score = 1244 bits (3218), Expect = 0.0
 Identities = 615/902 (68%), Positives = 723/902 (80%), Gaps = 2/902 (0%)
 Frame = -3

Query: 3530 SQRCNRLISCHSTSLQTHTLSESVSLDNRVFTEDPPWMAS-FLSSNHTNHKLALH-DMER 3357
            ++ C  L+   S +   H L   +    R+F +DPPW +S FL   +   KL  + +M++
Sbjct: 114  TETCADLVIPRSENSTNHQLM-CLEPRRRIFVQDPPWFSSIFLKGLYKRIKLQEYREMKK 172

Query: 3356 KKHALLRRRQVKAETEAWERTAQEYREFEREMCQNKLAPCLPYVKSLFLGWFEPLKQAIX 3177
            +K  LLRRRQVK ETEAWER   EY+E E +M + +LAP LP++K LFLGWF PL +AI 
Sbjct: 173  RKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIE 232

Query: 3176 XXXXXXXXXXXXXXXXXXXXXXXADKMAVIVMHKMMGLLMIGQDDACVRVVQAAIHIGEA 2997
                                   ADK+AVIVMHKMMGL+M G +D CV+VVQAA+HIG A
Sbjct: 233  REQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMA 292

Query: 2996 IEQEVRIHNFLERTKKFRNRKKIEDDEHESVRKNQEILRXXXXXXXXXXXXXXXXXXXKS 2817
            IEQE+RIH+FLE+TK ++ RKKI  D  E + K +E+LR                   K+
Sbjct: 293  IEQEIRIHSFLEKTKNYK-RKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKN 351

Query: 2816 EDGTMSWGRDAQAKLGSRLIELLIETAFVQPPANQLPDDPPEIRPAFRHTFKTMVKEPGR 2637
            E+ T  WGRD QAKLGSRL+ELLIETA+VQ P N     PP++RPAFRH FKT++K PG+
Sbjct: 352  EE-TKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQ 410

Query: 2636 KGGNRYGVIDCDSLVRQGLDRTARHMVIPYVPMLIPPRKWKGYERGGHLFLPSYVMRTHG 2457
            K   RYGV++CD LV +GLDR+A+HM+IPYVPML+PP+KWKGY +GG+LFLPSYVMRTHG
Sbjct: 411  KTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHG 470

Query: 2456 ARQQQDAIKSVPIKQMQKVFEALDTLGQTKWRVNKRVLVVVEDFWKKGGNVAGLVNREDV 2277
            +R+QQ+A+KSV    M+KVFEALDTLG TKWRVNK+VL V+E  W  GGN+AGLV+R DV
Sbjct: 471  SRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDV 530

Query: 2276 AVPEKPLSEDAMEIQKWKWSVRKVKKCNRERHAQRCDIELKLSVARRMKNEEGFYYPHNL 2097
             +PEKPLSED  E+QKWKWSVRK KK N+ERH+QRCD ELKLSVARRMK+EEGFYYPHNL
Sbjct: 531  LIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNL 590

Query: 2096 DFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLQWLKIHLSNLYGGGVEKLSYDG 1917
            DFRGRAYPMHPHLNHLSSD+CRGVLEFAEGRPLGKSGL+WLKIHL+NL+ GGVEKLS+DG
Sbjct: 591  DFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDG 650

Query: 1916 RLTFVENHLNDILDSADKPVDGKRWWLNAEDPFQCLAACINLSEALKSSAPYTVLSHLPI 1737
            RL FVENHL +I DSA+ P++G RWWL AEDPFQCLAACINLSEALKSS+P++V+SHLPI
Sbjct: 651  RLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPI 710

Query: 1736 HQDGSCNGLQHYAALGRDSXXXXXXXXXXXERPADVYSEIAARVLDIMKRDCKKDPAIDP 1557
            HQDGSCNGLQHYAALGR++           E+PADVYSEIA RV +IMKRD  KDP+  P
Sbjct: 711  HQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHP 770

Query: 1556 VAVLAKVLIGQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEERGEITDDRLLFGAACYA 1377
             A+LAK+LI QVDRKLVKQTVMTSVYGVT+VGAREQIKRRLEE+G ITDDR LF AACYA
Sbjct: 771  QALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYA 830

Query: 1376 AKVTLTALGEMFQAARGIMGWLGECAKIIASENQPVRWTTPLGLPVVQPYRKSERHLIRT 1197
            AKVTLTALGE+F+AAR IMGWLG+CAK+IASENQPVRWTTPLGLPVVQPY K+ERHLIRT
Sbjct: 831  AKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRT 890

Query: 1196 SLQVLALQREGDFVEVKRQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTH 1017
            SLQVLALQREG+ VE+++QRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTH
Sbjct: 891  SLQVLALQREGNLVEIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTH 950

Query: 1016 ACDVDEMNQILREKFIELYSVPILDKLLESFQTSXXXXXXXXXPDRGDFDLKHVLDSPYF 837
            ACDVDEMNQILR+KF+ELY++P+L+ LLESFQTS         P+RG+FDL+ VL+SPYF
Sbjct: 951  ACDVDEMNQILRKKFVELYNMPMLENLLESFQTSYPTLSFPPLPERGNFDLEEVLESPYF 1010

Query: 836  FN 831
            FN
Sbjct: 1011 FN 1012


>gb|KDO62285.1| hypothetical protein CISIN_1g001795mg [Citrus sinensis]
          Length = 1012

 Score = 1244 bits (3218), Expect = 0.0
 Identities = 615/902 (68%), Positives = 723/902 (80%), Gaps = 2/902 (0%)
 Frame = -3

Query: 3530 SQRCNRLISCHSTSLQTHTLSESVSLDNRVFTEDPPWMAS-FLSSNHTNHKLALH-DMER 3357
            ++ C  L+   S +   H L   +    R+F +DPPW +S FL   +   KL  + +M++
Sbjct: 114  TETCADLVIPRSENSTNHQLM-CLEPRRRIFVQDPPWFSSIFLKGLYKRIKLQEYREMKK 172

Query: 3356 KKHALLRRRQVKAETEAWERTAQEYREFEREMCQNKLAPCLPYVKSLFLGWFEPLKQAIX 3177
            +K  LLRRRQVK ETEAWER   EY+E E +M + +LAP LP++K LFLGWF PL +AI 
Sbjct: 173  RKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIE 232

Query: 3176 XXXXXXXXXXXXXXXXXXXXXXXADKMAVIVMHKMMGLLMIGQDDACVRVVQAAIHIGEA 2997
                                   ADK+AVIVMHKMMGL+M G +D CV+VVQAA+HIG A
Sbjct: 233  REQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMA 292

Query: 2996 IEQEVRIHNFLERTKKFRNRKKIEDDEHESVRKNQEILRXXXXXXXXXXXXXXXXXXXKS 2817
            IEQE+RIH+FLE+TK ++ RKKI  D  E + K +E+LR                   K+
Sbjct: 293  IEQEIRIHSFLEKTKNYK-RKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKN 351

Query: 2816 EDGTMSWGRDAQAKLGSRLIELLIETAFVQPPANQLPDDPPEIRPAFRHTFKTMVKEPGR 2637
            E+ T  WGRD QAKLGSRL+ELLIETA+VQ P N     PP++RPAFRH FKT++K PG+
Sbjct: 352  EE-TKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQ 410

Query: 2636 KGGNRYGVIDCDSLVRQGLDRTARHMVIPYVPMLIPPRKWKGYERGGHLFLPSYVMRTHG 2457
            K   RYGV++CD LV +GLDR+A+HM+IPYVPML+PP+KWKGY +GG+LFLPSYVMRTHG
Sbjct: 411  KTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHG 470

Query: 2456 ARQQQDAIKSVPIKQMQKVFEALDTLGQTKWRVNKRVLVVVEDFWKKGGNVAGLVNREDV 2277
            +R+QQ+A+KSV    M+KVFEALDTLG TKWRVNK+VL V+E  W  GGN+AGLV+R DV
Sbjct: 471  SRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDV 530

Query: 2276 AVPEKPLSEDAMEIQKWKWSVRKVKKCNRERHAQRCDIELKLSVARRMKNEEGFYYPHNL 2097
             +PEKPLSED  E+QKWKWSVRK KK N+ERH+QRCD ELKLSVARRMK+EEGFYYPHNL
Sbjct: 531  LIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNL 590

Query: 2096 DFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLQWLKIHLSNLYGGGVEKLSYDG 1917
            DFRGRAYPMHPHLNHLSSD+CRGVLEFAEGRPLGKSGL+WLKIHL+NL+ GGVEKLS+DG
Sbjct: 591  DFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDG 650

Query: 1916 RLTFVENHLNDILDSADKPVDGKRWWLNAEDPFQCLAACINLSEALKSSAPYTVLSHLPI 1737
            RL FVENHL +I DSA+ P++G RWWL AEDPFQCLAACINLSEALKSS+P++V+SHLPI
Sbjct: 651  RLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPI 710

Query: 1736 HQDGSCNGLQHYAALGRDSXXXXXXXXXXXERPADVYSEIAARVLDIMKRDCKKDPAIDP 1557
            HQDGSCNGLQHYAALGR++           E+PADVYSEIA RV +IMKRD  KDP+  P
Sbjct: 711  HQDGSCNGLQHYAALGRNTVEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHP 770

Query: 1556 VAVLAKVLIGQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEERGEITDDRLLFGAACYA 1377
             A+LAK+LI QVDRKLVKQTVMTSVYGVT+VGAREQIKRRLEE+G ITDDR LF AACYA
Sbjct: 771  QALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYA 830

Query: 1376 AKVTLTALGEMFQAARGIMGWLGECAKIIASENQPVRWTTPLGLPVVQPYRKSERHLIRT 1197
            AKVTLTALGE+F+AAR IMGWLG+CAK+IASENQPVRWTTPLGLPVVQPY K+ERHLIRT
Sbjct: 831  AKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRT 890

Query: 1196 SLQVLALQREGDFVEVKRQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTH 1017
            SLQVLALQREG+ VE+++QRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTH
Sbjct: 891  SLQVLALQREGNLVEIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTH 950

Query: 1016 ACDVDEMNQILREKFIELYSVPILDKLLESFQTSXXXXXXXXXPDRGDFDLKHVLDSPYF 837
            ACDVDEMNQILR+KF+ELY++P+L+ LLESFQTS         P+RG+FDL+ VL+SPYF
Sbjct: 951  ACDVDEMNQILRKKFVELYNMPMLENLLESFQTSYPTLSFPPLPERGNFDLEEVLESPYF 1010

Query: 836  FN 831
            FN
Sbjct: 1011 FN 1012


>ref|XP_006474044.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Citrus
            sinensis]
          Length = 1009

 Score = 1244 bits (3218), Expect = 0.0
 Identities = 620/923 (67%), Positives = 728/923 (78%), Gaps = 2/923 (0%)
 Frame = -3

Query: 3593 PAPPRAQFYHQWKHGIHISVKSQRCNRLISCHSTSLQTHTLSESVSLDNRVFTEDPPWMA 3414
            P   + Q +HQ          ++ C  L+   S +   H L   +    R+F +DPPW +
Sbjct: 96   PTCEQEQIFHQRVEN------TETCADLVIPRSENSTNHQLM-CLEPRRRIFVQDPPWFS 148

Query: 3413 S-FLSSNHTNHKLALH-DMERKKHALLRRRQVKAETEAWERTAQEYREFEREMCQNKLAP 3240
            S FL   +   KL  + +M+++K  LLRRRQVK ETEAWER   EY+E E +M + +LAP
Sbjct: 149  SIFLKGLYKRIKLQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAP 208

Query: 3239 CLPYVKSLFLGWFEPLKQAIXXXXXXXXXXXXXXXXXXXXXXXXADKMAVIVMHKMMGLL 3060
             LP++K LFLGWF PL++AI                        ADK+AVIVMHKMMGL+
Sbjct: 209  NLPHIKGLFLGWFGPLREAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLV 268

Query: 3059 MIGQDDACVRVVQAAIHIGEAIEQEVRIHNFLERTKKFRNRKKIEDDEHESVRKNQEILR 2880
            M G +D CV+VVQAA+HIG AIEQE+RIH+FLE+TK ++ RKKI  D  E + K +E+LR
Sbjct: 269  MAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYK-RKKIIADTEEVLSKEKELLR 327

Query: 2879 XXXXXXXXXXXXXXXXXXXKSEDGTMSWGRDAQAKLGSRLIELLIETAFVQPPANQLPDD 2700
                               K+E+ T  WGRD QAKLGSRL+ELLIETA+VQ P N     
Sbjct: 328  KRVNSLIKSKRVMEAQKLLKNEE-TKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYS 386

Query: 2699 PPEIRPAFRHTFKTMVKEPGRKGGNRYGVIDCDSLVRQGLDRTARHMVIPYVPMLIPPRK 2520
            PP++RPAFRH FKT++K PG+K   RYGV++CD LV  GLDR+A+HM+IPYVPML+PP+K
Sbjct: 387  PPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLAGLDRSAKHMLIPYVPMLVPPKK 446

Query: 2519 WKGYERGGHLFLPSYVMRTHGARQQQDAIKSVPIKQMQKVFEALDTLGQTKWRVNKRVLV 2340
            WKGY +GG+LFLPSYVMRTHG+R+QQ+A+KSV    M+KVFEALDTLG TKWRVNK+VL 
Sbjct: 447  WKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLS 506

Query: 2339 VVEDFWKKGGNVAGLVNREDVAVPEKPLSEDAMEIQKWKWSVRKVKKCNRERHAQRCDIE 2160
            V+E  W  GGN+AGLV+R DV +PEKPLSED  E+QKWKWSVRK KK N+ERH+QRCD E
Sbjct: 507  VLESIWVSGGNIAGLVDRNDVPIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTE 566

Query: 2159 LKLSVARRMKNEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLQ 1980
            LKLSVARRMK+EEGFYYPHNLDFRGRAYPMHPHLNHLSSD+CRGVLEFAEGRPLGKSGL+
Sbjct: 567  LKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLR 626

Query: 1979 WLKIHLSNLYGGGVEKLSYDGRLTFVENHLNDILDSADKPVDGKRWWLNAEDPFQCLAAC 1800
            WLKIHL+NL+ GGVEKLS+DGRL FVENHL +I DSA+ P++G RWWL AEDPFQCLAAC
Sbjct: 627  WLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAAC 686

Query: 1799 INLSEALKSSAPYTVLSHLPIHQDGSCNGLQHYAALGRDSXXXXXXXXXXXERPADVYSE 1620
            INLSEALKSS+P++V+SHLPIHQDGSCNGLQHYAALGR++           E+PADVYSE
Sbjct: 687  INLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSE 746

Query: 1619 IAARVLDIMKRDCKKDPAIDPVAVLAKVLIGQVDRKLVKQTVMTSVYGVTYVGAREQIKR 1440
            IA RV +IMKRD  KDP+  P A+LAK+LI QVDRKLVKQTVMTSVYGVT+VGAREQIKR
Sbjct: 747  IAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKR 806

Query: 1439 RLEERGEITDDRLLFGAACYAAKVTLTALGEMFQAARGIMGWLGECAKIIASENQPVRWT 1260
            RLEE+G ITDDR LF AACYAAKVTLTALGE+F+AAR IMGWLG+CAK+IASENQPVRWT
Sbjct: 807  RLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWT 866

Query: 1259 TPLGLPVVQPYRKSERHLIRTSLQVLALQREGDFVEVKRQRTAFPPNFVHSLDGSHMMMT 1080
            TPLGLPVVQPY K+ERHLIRTSLQVLALQREG  VE+++QRTAFPPNFVHSLDGSHMMMT
Sbjct: 867  TPLGLPVVQPYCKNERHLIRTSLQVLALQREGKSVEIRKQRTAFPPNFVHSLDGSHMMMT 926

Query: 1079 AVACRDAGLHFAGVHDSFWTHACDVDEMNQILREKFIELYSVPILDKLLESFQTSXXXXX 900
            AVACRDAGLHFAGVHDSFWTHACDVDEMNQILR+KF+ELY++PIL+ LLESFQTS     
Sbjct: 927  AVACRDAGLHFAGVHDSFWTHACDVDEMNQILRKKFVELYNMPILENLLESFQTSYPTLS 986

Query: 899  XXXXPDRGDFDLKHVLDSPYFFN 831
                P+RG+FDL+ VL+SPYFFN
Sbjct: 987  FPPLPERGNFDLEEVLESPYFFN 1009


>ref|XP_007013877.1| DNA/RNA polymerases superfamily protein isoform 1 [Theobroma cacao]
            gi|508784240|gb|EOY31496.1| DNA/RNA polymerases
            superfamily protein isoform 1 [Theobroma cacao]
          Length = 978

 Score = 1243 bits (3216), Expect = 0.0
 Identities = 612/879 (69%), Positives = 716/879 (81%), Gaps = 7/879 (0%)
 Frame = -3

Query: 3446 RVFTEDPPWMAS-FLSSNH--TNH--KLALHDMERKKHALLRRRQVKAETEAWERTAQEY 3282
            R+F +DPPW+++ FL   +  TN   K+   ++E++K+ LLRRRQVK ETEAWE+  +EY
Sbjct: 103  RLFIQDPPWISALFLKGLYKMTNQTVKIEHKEIEKRKYNLLRRRQVKEETEAWEKMVEEY 162

Query: 3281 REFEREMCQNKLAPCLPYVKSLFLGWFEPLKQAIXXXXXXXXXXXXXXXXXXXXXXXXA- 3105
            RE +REMC+ KLAP LPYVK LFLGWFEP+++AI                          
Sbjct: 163  RELQREMCEKKLAPNLPYVKGLFLGWFEPMREAIAREQKVQKGKSKKLRAAYAPHIELLP 222

Query: 3104 -DKMAVIVMHKMMGLLMIGQDDACVRVVQAAIHIGEAIEQEVRIHNFLERTKKFRNRKKI 2928
             DKMAVIVMHKMMGL+M  Q++  V+VVQAA+HIG AIEQEVRIHNFLE+TK ++ +K  
Sbjct: 223  ADKMAVIVMHKMMGLVMGAQENGFVQVVQAAVHIGVAIEQEVRIHNFLEKTKNYQRKKTT 282

Query: 2927 EDDEHESVRKNQEILRXXXXXXXXXXXXXXXXXXXKSEDGTMSWGRDAQAKLGSRLIELL 2748
              DE + + K +EIL+                   K+E+    WGRDAQAKLGSRL+ELL
Sbjct: 283  --DEVQGLSKEKEILKKRVNSLIRRRRLVEVQKLVKNEE-IKPWGRDAQAKLGSRLLELL 339

Query: 2747 IETAFVQPPANQLPDDPPEIRPAFRHTFKTMVKEPGRKGGNRYGVIDCDSLVRQGLDRTA 2568
             ETA+VQPP +Q  D PP+++PAFRH FKT+ K+PG+K   RYGVI+CD L+  GLDR+A
Sbjct: 340  TETAYVQPPIDQSGDSPPDVQPAFRHKFKTISKDPGKKMMKRYGVIECDPLILSGLDRSA 399

Query: 2567 RHMVIPYVPMLIPPRKWKGYERGGHLFLPSYVMRTHGARQQQDAIKSVPIKQMQKVFEAL 2388
            +HM+IPYVPML+PP+KWKGY++GG+LFLPSYVMRTHG+R+QQDA+K V +K+MQKVFEAL
Sbjct: 400  KHMLIPYVPMLVPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQDALKGVHVKKMQKVFEAL 459

Query: 2387 DTLGQTKWRVNKRVLVVVEDFWKKGGNVAGLVNREDVAVPEKPLSEDAMEIQKWKWSVRK 2208
            DTLG TKWRVNK+VL VVE  W  GGN+AGLV+R D+ +PEKP SED+ E Q+WKWSVRK
Sbjct: 460  DTLGSTKWRVNKKVLAVVESIWASGGNIAGLVDRNDIPIPEKPSSEDSTESQEWKWSVRK 519

Query: 2207 VKKCNRERHAQRCDIELKLSVARRMKNEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG 2028
              K NRERH+QRCD ELKLSVAR+M+NEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG
Sbjct: 520  ANKINRERHSQRCDTELKLSVARKMENEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG 579

Query: 2027 VLEFAEGRPLGKSGLQWLKIHLSNLYGGGVEKLSYDGRLTFVENHLNDILDSADKPVDGK 1848
            VLEFAEGRPLG+SGL WLKIHL+NL+ GGVEKLS+DGRL FV+NHL+DI DSA+ P++G 
Sbjct: 580  VLEFAEGRPLGRSGLHWLKIHLANLFAGGVEKLSHDGRLAFVDNHLDDIFDSAENPINGN 639

Query: 1847 RWWLNAEDPFQCLAACINLSEALKSSAPYTVLSHLPIHQDGSCNGLQHYAALGRDSXXXX 1668
            RWWL AEDPFQCLAACINLSE+LKSS+P++VLS+LPIHQDGSCNGLQHYAALGRDS    
Sbjct: 640  RWWLTAEDPFQCLAACINLSESLKSSSPHSVLSYLPIHQDGSCNGLQHYAALGRDSLEAA 699

Query: 1667 XXXXXXXERPADVYSEIAARVLDIMKRDCKKDPAIDPVAVLAKVLIGQVDRKLVKQTVMT 1488
                   E+PADVYSEIA RV +IMKRD  KDPA +P A LAK+LI QVDRKLVKQTVMT
Sbjct: 700  AVNLVAGEKPADVYSEIAVRVHNIMKRDSDKDPATNPNASLAKLLIDQVDRKLVKQTVMT 759

Query: 1487 SVYGVTYVGAREQIKRRLEERGEITDDRLLFGAACYAAKVTLTALGEMFQAARGIMGWLG 1308
            SVYGVT+VGAREQIKRRLEE+G ITDDR+LF AACY AKVTL ALGE+FQAAR IMGWLG
Sbjct: 760  SVYGVTFVGAREQIKRRLEEKGHITDDRVLFAAACYTAKVTLAALGELFQAARNIMGWLG 819

Query: 1307 ECAKIIASENQPVRWTTPLGLPVVQPYRKSERHLIRTSLQVLALQREGDFVEVKRQRTAF 1128
            +CAK+IASENQPV+WTTPLGLPVVQPY KSERHLIRTSLQVLALQREGD VEV++QRTAF
Sbjct: 820  DCAKVIASENQPVQWTTPLGLPVVQPYYKSERHLIRTSLQVLALQREGDSVEVRKQRTAF 879

Query: 1127 PPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQILREKFIELYSVPI 948
            PPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDV++MNQILREKF+ELYS+P+
Sbjct: 880  PPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVEKMNQILREKFVELYSMPV 939

Query: 947  LDKLLESFQTSXXXXXXXXXPDRGDFDLKHVLDSPYFFN 831
            L+ L ES QTS         P+RG+FDL+ VL SPYFFN
Sbjct: 940  LENLFESVQTSYPSLVFPPLPERGNFDLREVLKSPYFFN 978


>ref|XP_011069583.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic isoform X1
            [Sesamum indicum]
          Length = 952

 Score = 1242 bits (3214), Expect = 0.0
 Identities = 613/880 (69%), Positives = 714/880 (81%), Gaps = 8/880 (0%)
 Frame = -3

Query: 3446 RVFTEDPPWMAS-------FLSSNHTNHKLALHDMERKKHALLRRRQVKAETEAWERTAQ 3288
            R F +DPPW++S       F S N +  K+   + ER+K+ LLRRRQ+KAETEAWE   +
Sbjct: 76   RGFIQDPPWISSLYMKSLLFRSKNRSEVKIEFQETERRKYYLLRRRQIKAETEAWENMVE 135

Query: 3287 EYREFEREMCQNKLAPCLPYVKSLFLGWFEPLKQAIXXXXXXXXXXXXXXXXXXXXXXXX 3108
            EYRE EREMC+ KLAP LPYVK L LGWFEPL++AI                        
Sbjct: 136  EYRELEREMCEKKLAPNLPYVKKLILGWFEPLREAIEKEQNSQRSKKQKAAFAPFIDALP 195

Query: 3107 ADKMAVIVMHKMMGLLMIG-QDDACVRVVQAAIHIGEAIEQEVRIHNFLERTKKFRNRKK 2931
            ADKMAVIVMHK+M LLM+G ++D CVRVV+AA+ IG AIE EVRIHNFLE+TKK++ ++ 
Sbjct: 196  ADKMAVIVMHKIMSLLMMGGKEDRCVRVVEAAVQIGVAIEHEVRIHNFLEKTKKYQRKET 255

Query: 2930 IEDDEHESVRKNQEILRXXXXXXXXXXXXXXXXXXXKSEDGTMSWGRDAQAKLGSRLIEL 2751
            + + E +S +K   ILR                   ++E+ + SW RD QAKLG  LIEL
Sbjct: 256  VAETEEDS-KKEAAILRKRVKSLIRRNRVIEVQKLVRNEE-SKSWSRDTQAKLGCCLIEL 313

Query: 2750 LIETAFVQPPANQLPDDPPEIRPAFRHTFKTMVKEPGRKGGNRYGVIDCDSLVRQGLDRT 2571
            L ++A+VQPP NQ  D PP++RPAFRH FK   +E G+    +YGVI+CD LV  GLD+T
Sbjct: 314  LTQSAYVQPPVNQSADSPPDVRPAFRHFFKIAPRESGQNVVKKYGVIECDPLVLTGLDKT 373

Query: 2570 ARHMVIPYVPMLIPPRKWKGYERGGHLFLPSYVMRTHGARQQQDAIKSVPIKQMQKVFEA 2391
             +HM+IPYVPML+PP+KWKGY++GG+LFLPSY+MRTHG+R+QQ A+K+VP KQMQKV+EA
Sbjct: 374  VKHMIIPYVPMLVPPKKWKGYDKGGYLFLPSYLMRTHGSRKQQKAVKTVPPKQMQKVYEA 433

Query: 2390 LDTLGQTKWRVNKRVLVVVEDFWKKGGNVAGLVNREDVAVPEKPLSEDAMEIQKWKWSVR 2211
            LDTLG TKWRVNKR+L VVE  W  GGN+AGLVNREDV +PE  LS+DA E++KWKWSVR
Sbjct: 434  LDTLGNTKWRVNKRILSVVECIWAAGGNIAGLVNREDVPIPEL-LSDDAKEVKKWKWSVR 492

Query: 2210 KVKKCNRERHAQRCDIELKLSVARRMKNEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCR 2031
            KVKK N+ERH+QRCD ELKL+VAR+MK+EEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCR
Sbjct: 493  KVKKINQERHSQRCDTELKLNVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCR 552

Query: 2030 GVLEFAEGRPLGKSGLQWLKIHLSNLYGGGVEKLSYDGRLTFVENHLNDILDSADKPVDG 1851
            G+LEFAEGRPLGKSGL+WLKIHL+NLYGGGVEKLSYDGRL+FVEN++ +I DSAD  ++G
Sbjct: 553  GILEFAEGRPLGKSGLRWLKIHLANLYGGGVEKLSYDGRLSFVENNIAEIFDSADNSLNG 612

Query: 1850 KRWWLNAEDPFQCLAACINLSEALKSSAPYTVLSHLPIHQDGSCNGLQHYAALGRDSXXX 1671
             RWWL AEDPFQCLAACINL+EALKSS+P+TV+SHLPIHQDGSCNGLQHYAALGRDS   
Sbjct: 613  NRWWLKAEDPFQCLAACINLAEALKSSSPHTVISHLPIHQDGSCNGLQHYAALGRDSFEA 672

Query: 1670 XXXXXXXXERPADVYSEIAARVLDIMKRDCKKDPAIDPVAVLAKVLIGQVDRKLVKQTVM 1491
                    ++PADVYSEIA RV +IMKRD +KDPA DP A+LAK+LI QVDRKLVKQTVM
Sbjct: 673  AAVNLIAGDKPADVYSEIAERVHNIMKRDSEKDPATDPSALLAKLLISQVDRKLVKQTVM 732

Query: 1490 TSVYGVTYVGAREQIKRRLEERGEITDDRLLFGAACYAAKVTLTALGEMFQAARGIMGWL 1311
            TSVYGVTYVGAREQIKRRLEE+G ITDDRLLF AACYAAKVTL ALGE+FQAAR IMGWL
Sbjct: 733  TSVYGVTYVGAREQIKRRLEEKGLITDDRLLFSAACYAAKVTLAALGELFQAARAIMGWL 792

Query: 1310 GECAKIIASENQPVRWTTPLGLPVVQPYRKSERHLIRTSLQVLALQREGDFVEVKRQRTA 1131
            G+CAKIIASENQPV WTTPLGLPVVQPY K++RH+IRTSLQVLALQREGD VEV++QRTA
Sbjct: 793  GDCAKIIASENQPVCWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDSVEVRKQRTA 852

Query: 1130 FPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQILREKFIELYSVP 951
            FPPNFVHSLDGSHMMMTAVACRDAGL FAGVHDSFWTHACDVD MNQILREKF++LYS+P
Sbjct: 853  FPPNFVHSLDGSHMMMTAVACRDAGLRFAGVHDSFWTHACDVDRMNQILREKFVDLYSMP 912

Query: 950  ILDKLLESFQTSXXXXXXXXXPDRGDFDLKHVLDSPYFFN 831
            IL+ LLESFQTS         P+RGDFDL+ V++SPYFFN
Sbjct: 913  ILENLLESFQTSYPMLTFPPLPNRGDFDLEKVIESPYFFN 952


>ref|XP_009366215.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Pyrus x
            bretschneideri]
          Length = 972

 Score = 1241 bits (3210), Expect = 0.0
 Identities = 632/975 (64%), Positives = 738/975 (75%), Gaps = 46/975 (4%)
 Frame = -3

Query: 3617 LASTACFTPAPPRAQFYHQWKHGIHISVK---SQRCNRLISCHSTS-------------L 3486
            +ASTA F+P+P    +   W+    +S K   S   NRL+   S S             +
Sbjct: 1    MASTASFSPSPQAQTYSSTWRKPPKLSHKFLFSSASNRLVFKPSLSTPFPLSLQPPPEPV 60

Query: 3485 QTHTLSESVSLDN-------------------------RVFTEDPPWMAS-FLSSNH--T 3390
             +H + +SV  DN                         R+F +DPPW+A+ FL   +   
Sbjct: 61   LSHLVRDSVQ-DNLVENSMNLQLPIREFHLITPDESAPRIFIQDPPWIAALFLKGMYKKA 119

Query: 3389 NHKLALH--DMERKKHALLRRRQVKAETEAWERTAQEYREFEREMCQNKLAPCLPYVKSL 3216
            N +L L   +++R+K+ LLRRRQ+KAETEAWER  +EY++ ER M + KLAP LPYVK+L
Sbjct: 120  NQELKLESKEIDRRKYNLLRRRQIKAETEAWERMVEEYKDLERVMREKKLAPSLPYVKTL 179

Query: 3215 FLGWFEPLKQAIXXXXXXXXXXXXXXXXXXXXXXXXADKMAVIVMHKMMGLLMIGQDDAC 3036
            FLGWFEPL++AI                         DKMA+IVMHKMMGL+M+G  D C
Sbjct: 180  FLGWFEPLREAIAREQQVQQTKKHKAAFAPHIDLLPPDKMALIVMHKMMGLVMVGNQDGC 239

Query: 3035 VRVVQAAIHIGEAIEQEVRIHNFLERTKKFRNRKKIEDDEHESVRKNQEILRXXXXXXXX 2856
            V+VVQAA+HIG AIEQEVRIH+FLE+TK F+ +K    DE +S+ K +EILR        
Sbjct: 240  VQVVQAAVHIGMAIEQEVRIHSFLEKTKNFQRKKTAVADE-DSLIKEKEILRKRVNVLIK 298

Query: 2855 XXXXXXXXXXXKSEDGTMSWGRDAQAKLGSRLIELLIETAFVQPPANQLPDDPPEIRPAF 2676
                         E+    WGRD QAKLGSRLIELL ETA+VQPP NQL D PP++RPAF
Sbjct: 299  RKRLREVQKLLVKEE-FKPWGRDTQAKLGSRLIELLTETAYVQPPLNQLADGPPDVRPAF 357

Query: 2675 RHTFKTMVKEPGRKGGNRYGVIDCDSLVRQGLDRTARHMVIPYVPMLIPPRKWKGYERGG 2496
            RH FK   K PG+K    YGVI+CD LV  GLD+TA+HM+IPYVPML+PPRKWKGY++GG
Sbjct: 358  RHRFKAAAKTPGQKLVKNYGVIECDPLVLTGLDKTAKHMLIPYVPMLVPPRKWKGYDKGG 417

Query: 2495 HLFLPSYVMRTHGARQQQDAIKSVPIKQMQKVFEALDTLGQTKWRVNKRVLVVVEDFWKK 2316
            HLFLPSYVMRTHG+R+Q D ++++  KQMQKVFEALD LG TKWRVNK+VL VVE  W +
Sbjct: 418  HLFLPSYVMRTHGSRKQVDTMRNISGKQMQKVFEALDMLGSTKWRVNKKVLNVVESIWAR 477

Query: 2315 GGNVAGLVNREDVAVPEKPLSEDAMEIQKWKWSVRKVKKCNRERHAQRCDIELKLSVARR 2136
            GGN+AGLV+REDV VP+KP  E   EIQ+WKWSVRK KK N+ERH+ RCD ELKLSVAR+
Sbjct: 478  GGNIAGLVDREDVPVPDKPPLEGLTEIQEWKWSVRKAKKINQERHSLRCDTELKLSVARK 537

Query: 2135 MKNEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLQWLKIHLSN 1956
            MK+EEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGL+WLKIHL+N
Sbjct: 538  MKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLRWLKIHLAN 597

Query: 1955 LYGGGVEKLSYDGRLTFVENHLNDILDSADKPVDGKRWWLNAEDPFQCLAACINLSEALK 1776
            LY GGVEKLSY+ R  FV++H++DI DSA  PV+G RWWL AEDP QCLAACINLSEAL 
Sbjct: 598  LYAGGVEKLSYEERHAFVDHHIDDIFDSATNPVNGNRWWLTAEDPLQCLAACINLSEALN 657

Query: 1775 SSAPYTVLSHLPIHQDGSCNGLQHYAALGRDSXXXXXXXXXXXERPADVYSEIAARVLDI 1596
            S +P+TV+SHLPIHQDGSCNGLQHYAALGRDS           E+PADVYSEIAARV +I
Sbjct: 658  SPSPHTVISHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLVAGEKPADVYSEIAARVHEI 717

Query: 1595 MKRDCKKDPAIDPVAVLAKVLIGQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEERGEI 1416
            M+RD  KDP   P A+LA+VL+ Q+DRKLVKQTVMTSVYGVTYVGAREQIKRRLEE+G I
Sbjct: 718  MERDSNKDPTTSPNALLARVLVNQIDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGFI 777

Query: 1415 TDDRLLFGAACYAAKVTLTALGEMFQAARGIMGWLGECAKIIASENQPVRWTTPLGLPVV 1236
            TDDRLLF AACYAAKVTL ALGE+FQAARGIMGWLG+CAK+IASENQPVRWTTPLGLPVV
Sbjct: 778  TDDRLLFTAACYAAKVTLAALGEIFQAARGIMGWLGDCAKVIASENQPVRWTTPLGLPVV 837

Query: 1235 QPYRKSERHLIRTSLQVLALQREGDFVEVKRQRTAFPPNFVHSLDGSHMMMTAVACRDAG 1056
            QPY K+ERHLIRTSLQVLALQRE + ++V++QRTAFPPNFVHSLDGSHMMMTA+ACRDAG
Sbjct: 838  QPYCKNERHLIRTSLQVLALQRESNSIDVRKQRTAFPPNFVHSLDGSHMMMTALACRDAG 897

Query: 1055 LHFAGVHDSFWTHACDVDEMNQILREKFIELYSVPILDKLLESFQTSXXXXXXXXXPDRG 876
            L FAGVHDSFWTHACDVD+MN+ILREKFIELYS+PIL+ LLESFQ S         P+RG
Sbjct: 898  LRFAGVHDSFWTHACDVDQMNEILREKFIELYSMPILENLLESFQASYPALTFPPLPERG 957

Query: 875  DFDLKHVLDSPYFFN 831
            DFDL+ VL+SPYFFN
Sbjct: 958  DFDLQEVLESPYFFN 972


>ref|XP_006453566.1| hypothetical protein CICLE_v10007333mg [Citrus clementina]
            gi|557556792|gb|ESR66806.1| hypothetical protein
            CICLE_v10007333mg [Citrus clementina]
          Length = 1012

 Score = 1239 bits (3207), Expect = 0.0
 Identities = 609/874 (69%), Positives = 712/874 (81%), Gaps = 2/874 (0%)
 Frame = -3

Query: 3446 RVFTEDPPWMAS-FLSSNHTNHKLALH-DMERKKHALLRRRQVKAETEAWERTAQEYREF 3273
            R+F +DPPW +S FL   +   KL  + +M+++K  LLRRRQVK ETEAWER   EY+E 
Sbjct: 141  RIFVQDPPWFSSIFLKGLYKRIKLQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKEL 200

Query: 3272 EREMCQNKLAPCLPYVKSLFLGWFEPLKQAIXXXXXXXXXXXXXXXXXXXXXXXXADKMA 3093
            E +M + +LAP LP++K LFLGWF PL +AI                        ADKMA
Sbjct: 201  EAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPADKMA 260

Query: 3092 VIVMHKMMGLLMIGQDDACVRVVQAAIHIGEAIEQEVRIHNFLERTKKFRNRKKIEDDEH 2913
            VIVMHKMMGL+M G +D CV+VVQAA+HIG AIEQE+RIH+FLE+TK ++ RKKI  D  
Sbjct: 261  VIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYK-RKKIIADTE 319

Query: 2912 ESVRKNQEILRXXXXXXXXXXXXXXXXXXXKSEDGTMSWGRDAQAKLGSRLIELLIETAF 2733
            E + K +E+LR                   K+E+ T  WGRD QAKLGSRL+ELLIETA+
Sbjct: 320  EVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEE-TKPWGRDTQAKLGSRLVELLIETAY 378

Query: 2732 VQPPANQLPDDPPEIRPAFRHTFKTMVKEPGRKGGNRYGVIDCDSLVRQGLDRTARHMVI 2553
            VQ P N     PP++RPAFRH FKT++K PG+K   RYGV++CD LV +GLDR+A+HM+I
Sbjct: 379  VQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLI 438

Query: 2552 PYVPMLIPPRKWKGYERGGHLFLPSYVMRTHGARQQQDAIKSVPIKQMQKVFEALDTLGQ 2373
            PYVPML+PP+KWKGY +GG+LFLPSYVMRTHG+R+QQ+A+KSV    M+KVFEALDTLG 
Sbjct: 439  PYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGS 498

Query: 2372 TKWRVNKRVLVVVEDFWKKGGNVAGLVNREDVAVPEKPLSEDAMEIQKWKWSVRKVKKCN 2193
            TKWRVNK+VL V+E  W  GGN+AGLV+R DV +PEKPLSED  E+QKWKWSVRK KK N
Sbjct: 499  TKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKIN 558

Query: 2192 RERHAQRCDIELKLSVARRMKNEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFA 2013
            +ERH+QRCD ELKLSVARRMK+EEGFYYPHNLDFRGRAYPMHPHLNHLSSD+CRGVLEFA
Sbjct: 559  QERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFA 618

Query: 2012 EGRPLGKSGLQWLKIHLSNLYGGGVEKLSYDGRLTFVENHLNDILDSADKPVDGKRWWLN 1833
            EGRPLGKSGL+WLKIHL+NL+ GGVEKLS+DGRL FVENHL +I DSA+ P++G RWWL 
Sbjct: 619  EGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLT 678

Query: 1832 AEDPFQCLAACINLSEALKSSAPYTVLSHLPIHQDGSCNGLQHYAALGRDSXXXXXXXXX 1653
            AEDPFQCLAACINL+EALKSS+P++V+SHLPIHQDGSCNGLQHYAALGR++         
Sbjct: 679  AEDPFQCLAACINLAEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLV 738

Query: 1652 XXERPADVYSEIAARVLDIMKRDCKKDPAIDPVAVLAKVLIGQVDRKLVKQTVMTSVYGV 1473
              E+PADVYSEIA RV +IMKRD  KD +  P A+LAK+LI QVDRKLVKQTVMTSVYGV
Sbjct: 739  AGEKPADVYSEIAVRVHEIMKRDSNKDHSKHPQALLAKILIDQVDRKLVKQTVMTSVYGV 798

Query: 1472 TYVGAREQIKRRLEERGEITDDRLLFGAACYAAKVTLTALGEMFQAARGIMGWLGECAKI 1293
            T+VGAREQIKRRLEE+G ITDDR LF AACYAAKVTLTALGE+F+AAR IMGWLG+CAK+
Sbjct: 799  TFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKV 858

Query: 1292 IASENQPVRWTTPLGLPVVQPYRKSERHLIRTSLQVLALQREGDFVEVKRQRTAFPPNFV 1113
            IASENQPVRWTTPLGLPVVQPY K+ERHLIRTSLQVLALQREG+ VE+++QRTAFPPNFV
Sbjct: 859  IASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVEIRKQRTAFPPNFV 918

Query: 1112 HSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQILREKFIELYSVPILDKLL 933
            HSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQILR+KF+ELY++P+L+ LL
Sbjct: 919  HSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQILRKKFVELYNMPMLENLL 978

Query: 932  ESFQTSXXXXXXXXXPDRGDFDLKHVLDSPYFFN 831
            ESFQTS         P+RG+FDL+ VL+SPYFFN
Sbjct: 979  ESFQTSYPTLSFPSLPERGNFDLEEVLESPYFFN 1012


>ref|XP_007203225.1| hypothetical protein PRUPE_ppa000868mg [Prunus persica]
            gi|462398756|gb|EMJ04424.1| hypothetical protein
            PRUPE_ppa000868mg [Prunus persica]
          Length = 976

 Score = 1237 bits (3200), Expect = 0.0
 Identities = 609/877 (69%), Positives = 704/877 (80%), Gaps = 5/877 (0%)
 Frame = -3

Query: 3446 RVFTEDPPWMAS-FLSS--NHTNHKLALH--DMERKKHALLRRRQVKAETEAWERTAQEY 3282
            R+F +DPPW+AS FL       N +L L   ++ER+ + +LRRRQ+KAETEAWER   EY
Sbjct: 102  RIFIQDPPWIASLFLKGIYKRANQELKLESKEIERRNYNVLRRRQIKAETEAWERMVDEY 161

Query: 3281 REFEREMCQNKLAPCLPYVKSLFLGWFEPLKQAIXXXXXXXXXXXXXXXXXXXXXXXXAD 3102
            ++ E+ M + KLAP LPYVK+LFLGWFEPL++AI                        AD
Sbjct: 162  KDLEKVMREKKLAPNLPYVKALFLGWFEPLREAIAREQKTQQTKKHKAAFAPHIDLLPAD 221

Query: 3101 KMAVIVMHKMMGLLMIGQDDACVRVVQAAIHIGEAIEQEVRIHNFLERTKKFRNRKKIED 2922
            KMA+IVMHKMMGL+M+G  D CV+VVQAA+HIG AIEQEVRIH+FLE+TK  + +K    
Sbjct: 222  KMALIVMHKMMGLVMVGNQDGCVQVVQAAVHIGMAIEQEVRIHSFLEKTKNLQKKKTGVA 281

Query: 2921 DEHESVRKNQEILRXXXXXXXXXXXXXXXXXXXKSEDGTMSWGRDAQAKLGSRLIELLIE 2742
            DE + + K +EILR                     E+    WGRD QAKLGSRLIELL E
Sbjct: 282  DE-DGLSKEKEILRKRVNGLIRRKRLNEVQKLLIKEE-MKPWGRDKQAKLGSRLIELLTE 339

Query: 2741 TAFVQPPANQLPDDPPEIRPAFRHTFKTMVKEPGRKGGNRYGVIDCDSLVRQGLDRTARH 2562
            TA+VQPP +QL D PP++RPAFRH FK + K PG+K    YGVI+CD LV  GLD+TA+H
Sbjct: 340  TAYVQPPLSQLADSPPDVRPAFRHRFKAVAKSPGQKIVKNYGVIECDPLVLTGLDKTAKH 399

Query: 2561 MVIPYVPMLIPPRKWKGYERGGHLFLPSYVMRTHGARQQQDAIKSVPIKQMQKVFEALDT 2382
            M+IPYVPML+PP++WKGY++GGHLFLPSYVMRTHG+R+Q DA++++   QMQKVFEALD 
Sbjct: 400  MLIPYVPMLVPPKRWKGYDKGGHLFLPSYVMRTHGSRKQVDAMRNISRNQMQKVFEALDM 459

Query: 2381 LGQTKWRVNKRVLVVVEDFWKKGGNVAGLVNREDVAVPEKPLSEDAMEIQKWKWSVRKVK 2202
            LG TKWRVNK+VL VVE  W +GGN+AGLVNREDV VP+K  SED  EIQ+WKWSVRK K
Sbjct: 460  LGSTKWRVNKKVLSVVESIWARGGNIAGLVNREDVPVPDKSPSEDLKEIQEWKWSVRKAK 519

Query: 2201 KCNRERHAQRCDIELKLSVARRMKNEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVL 2022
            K N+ERH+QRCD ELKLSVAR+MK+EEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVL
Sbjct: 520  KINQERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVL 579

Query: 2021 EFAEGRPLGKSGLQWLKIHLSNLYGGGVEKLSYDGRLTFVENHLNDILDSADKPVDGKRW 1842
            EFAEGRPLGKSGL+WLKIHL+NLY GGVEKLSY+GRL FV+NH++DI DSA  PV+G RW
Sbjct: 580  EFAEGRPLGKSGLRWLKIHLANLYAGGVEKLSYEGRLAFVDNHIDDIFDSATNPVNGNRW 639

Query: 1841 WLNAEDPFQCLAACINLSEALKSSAPYTVLSHLPIHQDGSCNGLQHYAALGRDSXXXXXX 1662
            WL AEDP QCLAACINLSEAL S +P+TV+SHLPIHQDGSCNGLQHYAALGRDS      
Sbjct: 640  WLTAEDPLQCLAACINLSEALNSPSPHTVISHLPIHQDGSCNGLQHYAALGRDSLEAAAV 699

Query: 1661 XXXXXERPADVYSEIAARVLDIMKRDCKKDPAIDPVAVLAKVLIGQVDRKLVKQTVMTSV 1482
                 ++PADVYSEIAARV +IMKRD  KDP   P A+LA++L+ Q+DRKLVKQTVMTSV
Sbjct: 700  NLVDGDKPADVYSEIAARVHEIMKRDSNKDPTTSPNALLARILVNQIDRKLVKQTVMTSV 759

Query: 1481 YGVTYVGAREQIKRRLEERGEITDDRLLFGAACYAAKVTLTALGEMFQAARGIMGWLGEC 1302
            YGVTYVGAREQIKRRLEE+G ITDDRLLF AACYAAKVTL ALGE+FQAARGIM WLG+C
Sbjct: 760  YGVTYVGAREQIKRRLEEKGLITDDRLLFTAACYAAKVTLAALGEIFQAARGIMSWLGDC 819

Query: 1301 AKIIASENQPVRWTTPLGLPVVQPYRKSERHLIRTSLQVLALQREGDFVEVKRQRTAFPP 1122
            AK+IASENQPVRWTTPLGLPVVQPY KSERHLIRTSLQVLALQRE + V++++QRTAFPP
Sbjct: 820  AKVIASENQPVRWTTPLGLPVVQPYCKSERHLIRTSLQVLALQRESNSVDIRKQRTAFPP 879

Query: 1121 NFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQILREKFIELYSVPILD 942
            NFVHSLDGSHMMMTA+ACRDAGL FAGVHDSFWTH CDVD+MN+ILREKF+ELYS+PIL+
Sbjct: 880  NFVHSLDGSHMMMTALACRDAGLRFAGVHDSFWTHPCDVDQMNEILREKFVELYSMPILE 939

Query: 941  KLLESFQTSXXXXXXXXXPDRGDFDLKHVLDSPYFFN 831
             LLESFQ S         P+RGDFDL  VL+SPYFFN
Sbjct: 940  SLLESFQASYPALTFPPLPERGDFDLLQVLESPYFFN 976


>ref|XP_011033373.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Populus
            euphratica]
          Length = 982

 Score = 1236 bits (3198), Expect = 0.0
 Identities = 615/877 (70%), Positives = 706/877 (80%), Gaps = 5/877 (0%)
 Frame = -3

Query: 3446 RVFTEDPPWMAS-FLSSNHT----NHKLALHDMERKKHALLRRRQVKAETEAWERTAQEY 3282
            RVF  D PW+++ +    H       KL L D+E++K+ LLRRRQ++ ETEAWER A+EY
Sbjct: 108  RVFIRDSPWISALYWKGTHKIANKKVKLELKDIEKRKYNLLRRRQIREETEAWERMAEEY 167

Query: 3281 REFEREMCQNKLAPCLPYVKSLFLGWFEPLKQAIXXXXXXXXXXXXXXXXXXXXXXXXAD 3102
                +EMC+ KLAP LPYVKSLFLGWFEPLK+AI                        AD
Sbjct: 168  TGLVKEMCERKLAPNLPYVKSLFLGWFEPLKEAIEREQKLEKSKKQKSAFSPYIELLPAD 227

Query: 3101 KMAVIVMHKMMGLLMIGQDDACVRVVQAAIHIGEAIEQEVRIHNFLERTKKFRNRKKIED 2922
            KMAVIVMHKMMGL+M+G +D CVRVVQAA+ IG AIEQEVRIHNFLE+TK  + RKK   
Sbjct: 228  KMAVIVMHKMMGLVMVGHEDGCVRVVQAAVQIGIAIEQEVRIHNFLEKTKNHQ-RKKTMH 286

Query: 2921 DEHESVRKNQEILRXXXXXXXXXXXXXXXXXXXKSEDGTMSWGRDAQAKLGSRLIELLIE 2742
            D  ES+ K +E+LR                     +D T  W RD QAKLGSRLIELL E
Sbjct: 287  DVQESMDKEKEMLRKRVNSLIRRKRLMEVQNLVI-QDETKPWSRDKQAKLGSRLIELLTE 345

Query: 2741 TAFVQPPANQLPDDPPEIRPAFRHTFKTMVKEPGRKGGNRYGVIDCDSLVRQGLDRTARH 2562
            TA+VQPPA+Q    PP++RPAFRH FK++ K PG+K   +YGVI+CD L+  GLD TA+H
Sbjct: 346  TAYVQPPADQSEGIPPDVRPAFRHIFKSVTKNPGQKTVKKYGVIECDPLILTGLDGTAKH 405

Query: 2561 MVIPYVPMLIPPRKWKGYERGGHLFLPSYVMRTHGARQQQDAIKSVPIKQMQKVFEALDT 2382
            M+IPY PML+PP+KW+GY++GGHLFLPSY+MRTHG+RQQQDA++SVP KQMQKVFEALDT
Sbjct: 406  MLIPYFPMLVPPKKWRGYDKGGHLFLPSYIMRTHGSRQQQDAVRSVPGKQMQKVFEALDT 465

Query: 2381 LGQTKWRVNKRVLVVVEDFWKKGGNVAGLVNREDVAVPEKPLSEDAMEIQKWKWSVRKVK 2202
            LG TKWRVN +VL VVE  W  GGN AGLVNR D+ +PEKP S+D  EIQKWKWSVRK K
Sbjct: 466  LGNTKWRVNGKVLDVVERIWASGGNNAGLVNRGDIPIPEKPSSDDLTEIQKWKWSVRKAK 525

Query: 2201 KCNRERHAQRCDIELKLSVARRMKNEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVL 2022
            K N+ERH+QRCD ELKLSVAR++K+EEGFYYPHNLDFRGRAYPMHPHL HLSSDLCRGVL
Sbjct: 526  KINQERHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLTHLSSDLCRGVL 585

Query: 2021 EFAEGRPLGKSGLQWLKIHLSNLYGGGVEKLSYDGRLTFVENHLNDILDSADKPVDGKRW 1842
            EFAEGRPLGKSGL WLKIHL+NLY GGVEKLS+DGRL FVENHL++I DSA+ PV+GKRW
Sbjct: 586  EFAEGRPLGKSGLCWLKIHLANLYSGGVEKLSHDGRLAFVENHLSEIFDSAENPVNGKRW 645

Query: 1841 WLNAEDPFQCLAACINLSEALKSSAPYTVLSHLPIHQDGSCNGLQHYAALGRDSXXXXXX 1662
            WL AEDPFQCLAACINLSEALKS++P+TV+SHLPIHQDGSCNGLQHYAALG DS      
Sbjct: 646  WLTAEDPFQCLAACINLSEALKSTSPHTVISHLPIHQDGSCNGLQHYAALGGDSQEAAAV 705

Query: 1661 XXXXXERPADVYSEIAARVLDIMKRDCKKDPAIDPVAVLAKVLIGQVDRKLVKQTVMTSV 1482
                 E+P+DVYSEIAARV +I+++D  KDPA +P A+LAKVLI +VDRKLVKQTVMTSV
Sbjct: 706  NLVAAEKPSDVYSEIAARVHEIIRKDSNKDPATNPHALLAKVLIDEVDRKLVKQTVMTSV 765

Query: 1481 YGVTYVGAREQIKRRLEERGEITDDRLLFGAACYAAKVTLTALGEMFQAARGIMGWLGEC 1302
            YGVTYVGAREQIKRRLEE+G ITDDRLLF AACYAAKVTLTALGE+FQAAR IMGWLG+C
Sbjct: 766  YGVTYVGAREQIKRRLEEKGHITDDRLLFSAACYAAKVTLTALGELFQAARDIMGWLGDC 825

Query: 1301 AKIIASENQPVRWTTPLGLPVVQPYRKSERHLIRTSLQVLALQREGDFVEVKRQRTAFPP 1122
            AK+IASE+QPVRWTTPLGLPVVQPY K++RHLIRTSLQVLALQREG  V+V++QRTAFPP
Sbjct: 826  AKVIASEDQPVRWTTPLGLPVVQPYYKTQRHLIRTSLQVLALQREGSSVQVRKQRTAFPP 885

Query: 1121 NFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQILREKFIELYSVPILD 942
            NFVHSLDGSHMMMTAVACRDA L FAGVHDSFWTHA DVD MN+ILREKF+ELY++PIL+
Sbjct: 886  NFVHSLDGSHMMMTAVACRDADLRFAGVHDSFWTHARDVDLMNRILREKFVELYNMPILE 945

Query: 941  KLLESFQTSXXXXXXXXXPDRGDFDLKHVLDSPYFFN 831
             LLE FQTS         P+RG+FDL+ VL SPYFFN
Sbjct: 946  NLLEDFQTSYPTLKFPSLPERGNFDLQEVLRSPYFFN 982


>ref|XP_011018068.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Populus
            euphratica]
          Length = 983

 Score = 1236 bits (3198), Expect = 0.0
 Identities = 611/877 (69%), Positives = 701/877 (79%), Gaps = 5/877 (0%)
 Frame = -3

Query: 3446 RVFTEDPPWMASFLSSN-----HTNHKLALHDMERKKHALLRRRQVKAETEAWERTAQEY 3282
            RVF +DPPW+++          +   K+   D+E++K+ LLRRRQ++ ETEAWER A EY
Sbjct: 109  RVFIQDPPWISAHFWKGVYKIANKKVKVEFKDIEKRKYNLLRRRQIREETEAWERMADEY 168

Query: 3281 REFEREMCQNKLAPCLPYVKSLFLGWFEPLKQAIXXXXXXXXXXXXXXXXXXXXXXXXAD 3102
            R   REMC+ KLAP LPYVK L LGWFEPLK+AI                        AD
Sbjct: 169  RGLVREMCERKLAPNLPYVKGLLLGWFEPLKEAIEKEQKMEKSKKQKSAFSPNIELLPAD 228

Query: 3101 KMAVIVMHKMMGLLMIGQDDACVRVVQAAIHIGEAIEQEVRIHNFLERTKKFRNRKKIED 2922
            KMAVIVMHKMMGLLM+G +D CVRVVQAA+ IG AIEQEVRIHNFLE+TK  + RKK   
Sbjct: 229  KMAVIVMHKMMGLLMVGHEDGCVRVVQAAVQIGMAIEQEVRIHNFLEKTKNHQ-RKKTMH 287

Query: 2921 DEHESVRKNQEILRXXXXXXXXXXXXXXXXXXXKSEDGTMSWGRDAQAKLGSRLIELLIE 2742
            D  ES+ K +E+LR                     +D T  W R  QAKLGSRLIELL E
Sbjct: 288  DVQESMDKEKEMLRKRVNSLIRRKRLMEVQNLV-KQDETKPWSRGTQAKLGSRLIELLTE 346

Query: 2741 TAFVQPPANQLPDDPPEIRPAFRHTFKTMVKEPGRKGGNRYGVIDCDSLVRQGLDRTARH 2562
            TA+VQPP NQ  D PP++RPAFRH FKT+ K PG+K   +YGVI+CD L+  GLD TA+H
Sbjct: 347  TAYVQPPVNQSEDIPPDVRPAFRHIFKTLTKNPGQKIVKKYGVIECDPLILTGLDGTAKH 406

Query: 2561 MVIPYVPMLIPPRKWKGYERGGHLFLPSYVMRTHGARQQQDAIKSVPIKQMQKVFEALDT 2382
            M+IPY PML+PP+KWKGY++GGHLFLPSY+MRTHG+RQQQ A++SVP KQMQKVFEALDT
Sbjct: 407  MLIPYFPMLVPPKKWKGYDKGGHLFLPSYIMRTHGSRQQQVAVRSVPGKQMQKVFEALDT 466

Query: 2381 LGQTKWRVNKRVLVVVEDFWKKGGNVAGLVNREDVAVPEKPLSEDAMEIQKWKWSVRKVK 2202
            LG TKWRVN+R+L VVE  W  GGN+AGLV+RED+ +PEKP S+D  EIQKWKWSVRK K
Sbjct: 467  LGNTKWRVNRRLLDVVERIWTSGGNIAGLVDREDIPIPEKPSSDDLTEIQKWKWSVRKAK 526

Query: 2201 KCNRERHAQRCDIELKLSVARRMKNEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVL 2022
            K N+ERH+QRCD ELKLSVAR++K+EEGFYYPHNLDFRGRAYPMHPHL HLSSDLCRGVL
Sbjct: 527  KINQERHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLTHLSSDLCRGVL 586

Query: 2021 EFAEGRPLGKSGLQWLKIHLSNLYGGGVEKLSYDGRLTFVENHLNDILDSADKPVDGKRW 1842
            EF EGRPLGKSGL+WLKIHL+NLY GGVEKLS+DGRL FVENHL++I DSA  PV+GKRW
Sbjct: 587  EFEEGRPLGKSGLRWLKIHLANLYSGGVEKLSHDGRLAFVENHLSEIFDSAKNPVNGKRW 646

Query: 1841 WLNAEDPFQCLAACINLSEALKSSAPYTVLSHLPIHQDGSCNGLQHYAALGRDSXXXXXX 1662
            WL AEDPFQCLAACINLSEAL S++P+TV+SHLPIHQDGSCNGLQHYAALGRDS      
Sbjct: 647  WLKAEDPFQCLAACINLSEALNSASPHTVISHLPIHQDGSCNGLQHYAALGRDSLEAAAV 706

Query: 1661 XXXXXERPADVYSEIAARVLDIMKRDCKKDPAIDPVAVLAKVLIGQVDRKLVKQTVMTSV 1482
                 E+P+DVYSEIA RV +I++RD  KDPA +P A+LAK+L+ QVDRKLVKQTVMTSV
Sbjct: 707  NLVAAEKPSDVYSEIAVRVHEIIRRDSNKDPATNPHALLAKILVDQVDRKLVKQTVMTSV 766

Query: 1481 YGVTYVGAREQIKRRLEERGEITDDRLLFGAACYAAKVTLTALGEMFQAARGIMGWLGEC 1302
            YGVTYVGAREQIKRRLEE+G ITDDRLLF AACY AKVTLTALGE+FQAAR IM WLG+C
Sbjct: 767  YGVTYVGAREQIKRRLEEKGHITDDRLLFSAACYTAKVTLTALGELFQAARDIMSWLGDC 826

Query: 1301 AKIIASENQPVRWTTPLGLPVVQPYRKSERHLIRTSLQVLALQREGDFVEVKRQRTAFPP 1122
            AKIIASE+QPV+WTTPLGLPVVQPY K ERHLI+TSLQ+LALQREG  V+V++QRTAFPP
Sbjct: 827  AKIIASEDQPVQWTTPLGLPVVQPYYKRERHLIKTSLQILALQREGSSVQVRKQRTAFPP 886

Query: 1121 NFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQILREKFIELYSVPILD 942
            NFVHSLDGSHMMMTAVACRDAGL FAGVHDSFWTHA DVD MN+ILREKF+ELY++PIL+
Sbjct: 887  NFVHSLDGSHMMMTAVACRDAGLCFAGVHDSFWTHARDVDLMNRILREKFVELYNMPILE 946

Query: 941  KLLESFQTSXXXXXXXXXPDRGDFDLKHVLDSPYFFN 831
             LLE FQTS         P+RG+FDL+ VL SPYFFN
Sbjct: 947  NLLEDFQTSYPTLKFPPLPERGNFDLQKVLRSPYFFN 983


>ref|XP_002325119.1| DNA-directed RNA polymerase family protein [Populus trichocarpa]
            gi|222866553|gb|EEF03684.1| DNA-directed RNA polymerase
            family protein [Populus trichocarpa]
          Length = 882

 Score = 1235 bits (3196), Expect = 0.0
 Identities = 608/877 (69%), Positives = 703/877 (80%), Gaps = 5/877 (0%)
 Frame = -3

Query: 3446 RVFTEDPPWMASFLSSN-----HTNHKLALHDMERKKHALLRRRQVKAETEAWERTAQEY 3282
            +VF +DPPW+++          +   K+   D+E++K+ LLRRRQ++ ETEAWER A EY
Sbjct: 8    KVFIQDPPWISAHFWKGMYKLANKKVKVEFKDIEKRKYNLLRRRQIREETEAWERMADEY 67

Query: 3281 REFEREMCQNKLAPCLPYVKSLFLGWFEPLKQAIXXXXXXXXXXXXXXXXXXXXXXXXAD 3102
            R   REMC+ KLAP LPYVK L LGWFEPLK+AI                        AD
Sbjct: 68   RGLVREMCERKLAPNLPYVKGLLLGWFEPLKEAIEKEQKMEKSKKQKSAFSPNIELLPAD 127

Query: 3101 KMAVIVMHKMMGLLMIGQDDACVRVVQAAIHIGEAIEQEVRIHNFLERTKKFRNRKKIED 2922
            KMAVIVMHKMMGLLM+G +D CVRVVQAA+ IG AIEQEVRIHNFLE+TK ++ RKK   
Sbjct: 128  KMAVIVMHKMMGLLMVGHEDGCVRVVQAAVQIGMAIEQEVRIHNFLEKTKNYQ-RKKTMH 186

Query: 2921 DEHESVRKNQEILRXXXXXXXXXXXXXXXXXXXKSEDGTMSWGRDAQAKLGSRLIELLIE 2742
            +  E++ K +E+LR                     +D T  W R  QAKLGSRLIELL E
Sbjct: 187  EVQETMDKEKEVLRKRVNSLIRRKRLMEVQNLV-KQDETKPWSRGTQAKLGSRLIELLTE 245

Query: 2741 TAFVQPPANQLPDDPPEIRPAFRHTFKTMVKEPGRKGGNRYGVIDCDSLVRQGLDRTARH 2562
            TA+VQPP NQ  D PP++RPAFRH FKT+ K PG+K   +YGVI+CD L+  GLD TA+H
Sbjct: 246  TAYVQPPVNQSEDIPPDVRPAFRHIFKTLTKNPGQKIVKKYGVIECDPLILTGLDGTAKH 305

Query: 2561 MVIPYVPMLIPPRKWKGYERGGHLFLPSYVMRTHGARQQQDAIKSVPIKQMQKVFEALDT 2382
            M+IPY PML+PP+KWKGY++GGHLFLPSYVMRTHG+RQQQ A++SVP KQMQKVFEALDT
Sbjct: 306  MLIPYFPMLVPPKKWKGYDKGGHLFLPSYVMRTHGSRQQQVAVRSVPGKQMQKVFEALDT 365

Query: 2381 LGQTKWRVNKRVLVVVEDFWKKGGNVAGLVNREDVAVPEKPLSEDAMEIQKWKWSVRKVK 2202
            LG TKWRVN+R+L VVE  W  GGN+AGLV+RED+ +PEKP S+D  EIQKWKWSVRK K
Sbjct: 366  LGNTKWRVNRRLLDVVERIWTSGGNIAGLVDREDIPIPEKPSSDDLTEIQKWKWSVRKAK 425

Query: 2201 KCNRERHAQRCDIELKLSVARRMKNEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVL 2022
            K N+ERH+QRCD ELKLSVAR++K+EEGFYYPHNLDFRGRAYPMHPHL HLSSDLCRGVL
Sbjct: 426  KINQERHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLTHLSSDLCRGVL 485

Query: 2021 EFAEGRPLGKSGLQWLKIHLSNLYGGGVEKLSYDGRLTFVENHLNDILDSADKPVDGKRW 1842
            EF EGRPLGKSGL+WLKIHL+NLY GGVEKLS+DGRL FVENHL++I DSA  PV+GKRW
Sbjct: 486  EFEEGRPLGKSGLRWLKIHLANLYSGGVEKLSHDGRLAFVENHLSEIFDSAKNPVNGKRW 545

Query: 1841 WLNAEDPFQCLAACINLSEALKSSAPYTVLSHLPIHQDGSCNGLQHYAALGRDSXXXXXX 1662
            WL AEDPFQCLAACINLSEAL S++P+TV+SHLPIHQDGSCNGLQHYAALGRD+      
Sbjct: 546  WLKAEDPFQCLAACINLSEALNSASPHTVISHLPIHQDGSCNGLQHYAALGRDTLEAAAV 605

Query: 1661 XXXXXERPADVYSEIAARVLDIMKRDCKKDPAIDPVAVLAKVLIGQVDRKLVKQTVMTSV 1482
                 E+P+DVYSEIA RV +I++RD  KDPA +P A+LAK+L+ QVDRKLVKQTVMTSV
Sbjct: 606  NLVAAEKPSDVYSEIAVRVHEIIRRDSNKDPATNPHALLAKILVDQVDRKLVKQTVMTSV 665

Query: 1481 YGVTYVGAREQIKRRLEERGEITDDRLLFGAACYAAKVTLTALGEMFQAARGIMGWLGEC 1302
            YGVTYVGAREQIKRRLEE+G ITDDRLLF AACY AKVTLTALGE+FQAAR IM WLG+C
Sbjct: 666  YGVTYVGAREQIKRRLEEKGHITDDRLLFSAACYTAKVTLTALGELFQAARDIMSWLGDC 725

Query: 1301 AKIIASENQPVRWTTPLGLPVVQPYRKSERHLIRTSLQVLALQREGDFVEVKRQRTAFPP 1122
            AKIIASE+QPV+WTTPLGLPVVQPY K+ERHLI+TSLQ+LALQREG  V+V++QRTAFPP
Sbjct: 726  AKIIASEDQPVQWTTPLGLPVVQPYYKTERHLIKTSLQILALQREGSSVQVRKQRTAFPP 785

Query: 1121 NFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQILREKFIELYSVPILD 942
            NFVHSLDGSHMMMTAVACRDAGL FAGVHDSFWTHA DVD MN+ILREKF+ELY++PIL+
Sbjct: 786  NFVHSLDGSHMMMTAVACRDAGLCFAGVHDSFWTHATDVDLMNRILREKFVELYNMPILE 845

Query: 941  KLLESFQTSXXXXXXXXXPDRGDFDLKHVLDSPYFFN 831
             LLE FQTS         P+RG+FDL+ VL SPYFFN
Sbjct: 846  NLLEDFQTSYPTLQFPPLPERGNFDLQKVLRSPYFFN 882


>ref|XP_012445978.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Gossypium
            raimondii] gi|763786877|gb|KJB53873.1| hypothetical
            protein B456_009G009300 [Gossypium raimondii]
          Length = 972

 Score = 1234 bits (3192), Expect = 0.0
 Identities = 601/879 (68%), Positives = 713/879 (81%), Gaps = 7/879 (0%)
 Frame = -3

Query: 3446 RVFTEDPPWMASFL-----SSNHTNHKLALHDMERKKHALLRRRQVKAETEAWERTAQEY 3282
            R+F +DPPW+++          +   K+   ++E++K+ LLRRRQVK ETEAWE+  +EY
Sbjct: 97   RIFIQDPPWISALFWKGLYKMTNQTVKIEHKEIEKRKYNLLRRRQVKEETEAWEKMVEEY 156

Query: 3281 REFEREMCQNKLAPCLPYVKSLFLGWFEPLKQAIXXXXXXXXXXXXXXXXXXXXXXXXA- 3105
            RE EREMC+ KLAP LPYVK LFLGWFEPL++AI                          
Sbjct: 157  RELEREMCEKKLAPNLPYVKGLFLGWFEPLREAIAKEQKVQKGKNKKLRAAYAPHIELLP 216

Query: 3104 -DKMAVIVMHKMMGLLMIGQDDACVRVVQAAIHIGEAIEQEVRIHNFLERTKKFRNRKKI 2928
             DK+AVIVMHKMMGL+M  ++D  V+VVQAA+HIG AIEQEVRIH+FLE+TK ++ ++ +
Sbjct: 217  ADKLAVIVMHKMMGLVMGAEEDGYVQVVQAAVHIGVAIEQEVRIHSFLEKTKNYQRKQIV 276

Query: 2927 EDDEHESVRKNQEILRXXXXXXXXXXXXXXXXXXXKSEDGTMSWGRDAQAKLGSRLIELL 2748
              DE +   K +EILR                   K+E+    WGRDAQAKLGSRL+ELL
Sbjct: 277  --DEVQGASKEKEILRKRVNSLIRRRRLTEVQKLVKNEE-IKPWGRDAQAKLGSRLLELL 333

Query: 2747 IETAFVQPPANQLPDDPPEIRPAFRHTFKTMVKEPGRKGGNRYGVIDCDSLVRQGLDRTA 2568
             ETA+VQPP +Q  D P ++RPAFRH FKT+ + PG+K   RYGVI+CD L+R GLD++A
Sbjct: 334  TETAYVQPPIDQSGDSPLDVRPAFRHKFKTISRGPGQKIKKRYGVIECDPLIRSGLDKSA 393

Query: 2567 RHMVIPYVPMLIPPRKWKGYERGGHLFLPSYVMRTHGARQQQDAIKSVPIKQMQKVFEAL 2388
            +HM+IPYVPML+PP+KWKGY++GG+LFLPSYVMRTHG+R+QQ+A+K V +K M+KVFEAL
Sbjct: 394  KHMMIPYVPMLVPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQEALKGVNVKNMRKVFEAL 453

Query: 2387 DTLGQTKWRVNKRVLVVVEDFWKKGGNVAGLVNREDVAVPEKPLSEDAMEIQKWKWSVRK 2208
            DTLG TKWRVN +VL VVE  W  GGN+AGLV+R D+ +PEKP SED+ EIQ+WKWSVRK
Sbjct: 454  DTLGSTKWRVNNKVLAVVESIWASGGNIAGLVDRNDIPIPEKPYSEDSTEIQEWKWSVRK 513

Query: 2207 VKKCNRERHAQRCDIELKLSVARRMKNEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG 2028
              K NRERH+QRCD ELKLSVAR+M+NEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG
Sbjct: 514  ANKVNRERHSQRCDTELKLSVARKMENEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG 573

Query: 2027 VLEFAEGRPLGKSGLQWLKIHLSNLYGGGVEKLSYDGRLTFVENHLNDILDSADKPVDGK 1848
            VLEFAEGRPLG+SGL WLKIHL+NLY GGVEKLS+DGRL FV+NHL++I DSA+ P++G 
Sbjct: 574  VLEFAEGRPLGRSGLHWLKIHLANLYSGGVEKLSHDGRLAFVDNHLDEIFDSAENPINGN 633

Query: 1847 RWWLNAEDPFQCLAACINLSEALKSSAPYTVLSHLPIHQDGSCNGLQHYAALGRDSXXXX 1668
            RWWL AEDPFQCLAAC+NLSEALKS++P++++S+LPIHQDGSCNGLQHYAALGRD+    
Sbjct: 634  RWWLTAEDPFQCLAACMNLSEALKSTSPHSMISYLPIHQDGSCNGLQHYAALGRDNLEAA 693

Query: 1667 XXXXXXXERPADVYSEIAARVLDIMKRDCKKDPAIDPVAVLAKVLIGQVDRKLVKQTVMT 1488
                   E+PADVYSEIA RV +IMKRD  KDPA +P A+LAK+LI QVDRKLVKQTVMT
Sbjct: 694  AVNLVAGEKPADVYSEIAVRVHNIMKRDSNKDPATNPNALLAKLLIDQVDRKLVKQTVMT 753

Query: 1487 SVYGVTYVGAREQIKRRLEERGEITDDRLLFGAACYAAKVTLTALGEMFQAARGIMGWLG 1308
            SVYGVT+VGAREQIKRRLEE+G ITDDRLLF AACY AKVTL ALGE+FQAAR IMGWLG
Sbjct: 754  SVYGVTFVGAREQIKRRLEEKGHITDDRLLFSAACYTAKVTLAALGELFQAARNIMGWLG 813

Query: 1307 ECAKIIASENQPVRWTTPLGLPVVQPYRKSERHLIRTSLQVLALQREGDFVEVKRQRTAF 1128
            +CAK+IASENQPVRWTTPLGLPVVQPY KSERHLIRT+LQVLALQREG+ VEV++QRTAF
Sbjct: 814  DCAKVIASENQPVRWTTPLGLPVVQPYYKSERHLIRTTLQVLALQREGNSVEVRKQRTAF 873

Query: 1127 PPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQILREKFIELYSVPI 948
            PPNFVHSLDGSHMMMTAVACRDAGL+FAGVHDSFWTHACDV++MNQILREKF+ELYS+P+
Sbjct: 874  PPNFVHSLDGSHMMMTAVACRDAGLYFAGVHDSFWTHACDVEKMNQILREKFVELYSMPV 933

Query: 947  LDKLLESFQTSXXXXXXXXXPDRGDFDLKHVLDSPYFFN 831
            L+ LLESF+TS         P+RG+FDL+ VL SPYFFN
Sbjct: 934  LENLLESFETSYPTLVFPPLPERGNFDLREVLKSPYFFN 972


>ref|XP_008243031.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Prunus mume]
          Length = 976

 Score = 1234 bits (3192), Expect = 0.0
 Identities = 608/877 (69%), Positives = 703/877 (80%), Gaps = 5/877 (0%)
 Frame = -3

Query: 3446 RVFTEDPPWMAS-FLSS--NHTNHKLALH--DMERKKHALLRRRQVKAETEAWERTAQEY 3282
            R+F +DPPW+AS FL       N +L L   ++ER+ + LLRRRQ+KAETEAWER   EY
Sbjct: 102  RIFIQDPPWIASLFLKGIYKRANQELKLESKEIERRNYNLLRRRQIKAETEAWERMVDEY 161

Query: 3281 REFEREMCQNKLAPCLPYVKSLFLGWFEPLKQAIXXXXXXXXXXXXXXXXXXXXXXXXAD 3102
            ++ E+ M + KLAP LPYVK+LFLGWFEPL++AI                        AD
Sbjct: 162  KDLEKVMREKKLAPNLPYVKALFLGWFEPLREAIAREQKTQQTKKHKAAFAPHIDLLPAD 221

Query: 3101 KMAVIVMHKMMGLLMIGQDDACVRVVQAAIHIGEAIEQEVRIHNFLERTKKFRNRKKIED 2922
            KMA+IVMHKMMGL+M+G  D CV+VVQAA+HIG AIEQEVRIH+FLE+TK  + +K    
Sbjct: 222  KMALIVMHKMMGLVMVGNQDGCVQVVQAAVHIGMAIEQEVRIHSFLEKTKNLQKKKTGVA 281

Query: 2921 DEHESVRKNQEILRXXXXXXXXXXXXXXXXXXXKSEDGTMSWGRDAQAKLGSRLIELLIE 2742
            DE + + K +EILR                     E+    WGRD QAKLGSRLIELL E
Sbjct: 282  DE-DGLSKEKEILRKRVNGLIRRKRLNEVQKLLIKEE-MKPWGRDKQAKLGSRLIELLTE 339

Query: 2741 TAFVQPPANQLPDDPPEIRPAFRHTFKTMVKEPGRKGGNRYGVIDCDSLVRQGLDRTARH 2562
            TA+VQPP +QL + PP++RPAFRH FK + K PG+K    YGVI+CD LV  GLD+TA+H
Sbjct: 340  TAYVQPPLSQLAESPPDVRPAFRHRFKAVAKSPGQKIVKNYGVIECDPLVLTGLDKTAKH 399

Query: 2561 MVIPYVPMLIPPRKWKGYERGGHLFLPSYVMRTHGARQQQDAIKSVPIKQMQKVFEALDT 2382
            M+IPYVPML+PP++WKGY++GGHLFLPSYVMRTHG+R+Q DA++++   QMQKVFEALD 
Sbjct: 400  MLIPYVPMLVPPKRWKGYDKGGHLFLPSYVMRTHGSRKQVDAMRNISRNQMQKVFEALDM 459

Query: 2381 LGQTKWRVNKRVLVVVEDFWKKGGNVAGLVNREDVAVPEKPLSEDAMEIQKWKWSVRKVK 2202
            LG TKWRVNK+VL VVE  W +GGN+AGLVNREDV VP+K  SED  EIQ+WKWSVRK K
Sbjct: 460  LGSTKWRVNKKVLSVVESIWARGGNIAGLVNREDVPVPDKSPSEDLKEIQEWKWSVRKAK 519

Query: 2201 KCNRERHAQRCDIELKLSVARRMKNEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVL 2022
            K N+ERH+ RCD ELKLSVAR+MK+EEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVL
Sbjct: 520  KINQERHSLRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVL 579

Query: 2021 EFAEGRPLGKSGLQWLKIHLSNLYGGGVEKLSYDGRLTFVENHLNDILDSADKPVDGKRW 1842
            EFAEGRPLGKSGL+WLKIHL+NLY GGVEKLSY+GRL FV+NH++DI DSA  PV+G RW
Sbjct: 580  EFAEGRPLGKSGLRWLKIHLANLYAGGVEKLSYEGRLAFVDNHIDDIFDSATNPVNGNRW 639

Query: 1841 WLNAEDPFQCLAACINLSEALKSSAPYTVLSHLPIHQDGSCNGLQHYAALGRDSXXXXXX 1662
            WL AEDP QCLAACINLSEAL S +P+TV+SHLPIHQDGSCNGLQHYAALGRDS      
Sbjct: 640  WLTAEDPLQCLAACINLSEALNSPSPHTVISHLPIHQDGSCNGLQHYAALGRDSLEAAAV 699

Query: 1661 XXXXXERPADVYSEIAARVLDIMKRDCKKDPAIDPVAVLAKVLIGQVDRKLVKQTVMTSV 1482
                 ++PADVYSEIAARV +IMKRD  KDP   P A+LA++L+ Q+DRKLVKQTVMTSV
Sbjct: 700  NLVDGDKPADVYSEIAARVHEIMKRDSNKDPTTSPNALLARILVNQIDRKLVKQTVMTSV 759

Query: 1481 YGVTYVGAREQIKRRLEERGEITDDRLLFGAACYAAKVTLTALGEMFQAARGIMGWLGEC 1302
            YGVTYVGAREQIKRRLEE+G ITDDRLLF AACYAAKVTL ALGE+FQAARGIM WLG+C
Sbjct: 760  YGVTYVGAREQIKRRLEEKGLITDDRLLFTAACYAAKVTLAALGEIFQAARGIMSWLGDC 819

Query: 1301 AKIIASENQPVRWTTPLGLPVVQPYRKSERHLIRTSLQVLALQREGDFVEVKRQRTAFPP 1122
            AK+IASENQPVRWTTPLGLPVVQPY KSERHLIRTSLQVLALQRE + V++++QRTAFPP
Sbjct: 820  AKVIASENQPVRWTTPLGLPVVQPYCKSERHLIRTSLQVLALQRESNSVDIRKQRTAFPP 879

Query: 1121 NFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQILREKFIELYSVPILD 942
            NFVHSLDGSHMMMTA+ACRDAGL FAGVHDSFWTH CDVD+MN+ILREKF+ELYS+PIL+
Sbjct: 880  NFVHSLDGSHMMMTALACRDAGLRFAGVHDSFWTHPCDVDQMNEILREKFVELYSMPILE 939

Query: 941  KLLESFQTSXXXXXXXXXPDRGDFDLKHVLDSPYFFN 831
             LLESFQ S         P+RGDFDL  VL+SPYFFN
Sbjct: 940  SLLESFQASYPALTFPPLPERGDFDLLQVLESPYFFN 976


>gb|EYU37150.1| hypothetical protein MIMGU_mgv1a000925mg [Erythranthe guttata]
          Length = 941

 Score = 1231 bits (3186), Expect = 0.0
 Identities = 610/890 (68%), Positives = 706/890 (79%), Gaps = 8/890 (0%)
 Frame = -3

Query: 3476 TLSESVSLDNRVFTEDPPWMAS-------FLSSNHTNHKLALHDMERKKHALLRRRQVKA 3318
            TL ES    +RVF +DPPW++S       F S N    K+   +MER+K+ LLRRRQVKA
Sbjct: 57   TLQES---KDRVFIQDPPWISSLFMKNLLFRSRNRGGVKIEFQEMERRKYYLLRRRQVKA 113

Query: 3317 ETEAWERTAQEYREFEREMCQNKLAPCLPYVKSLFLGWFEPLKQAIXXXXXXXXXXXXXX 3138
            ETEAWE   +EYRE EREMC+ KLAP LPYVK L LGWFEPL++AI              
Sbjct: 114  ETEAWENKVEEYRELEREMCEKKLAPNLPYVKKLILGWFEPLREAIEKEQNTQRSKKNKA 173

Query: 3137 XXXXXXXXXXADKMAVIVMHKMMGLLMIG-QDDACVRVVQAAIHIGEAIEQEVRIHNFLE 2961
                      ADKMAVIVMHKMMGLLM+G ++D CVRVV+AA+ IG A+E EVRIH+FLE
Sbjct: 174  AFAPFIDALPADKMAVIVMHKMMGLLMMGGKEDRCVRVVEAAVQIGVAVENEVRIHSFLE 233

Query: 2960 RTKKFRNRKKIEDDEHESVRKNQEILRXXXXXXXXXXXXXXXXXXXKSEDGTMSWGRDAQ 2781
            + KK  N K+   DE +    N+ ++                       +   SWGRD Q
Sbjct: 234  KMKK--NEKREIGDESQVDSSNEAVIMRKRVKSLIKRNRVIEVHKLVRSEEFKSWGRDIQ 291

Query: 2780 AKLGSRLIELLIETAFVQPPANQLPDDPPEIRPAFRHTFKTMVKEPGRKGGNRYGVIDCD 2601
            AKLG  LIELL ++A+VQPP NQ  D PP++RPAFRH FK   + PG+    RYGVI+CD
Sbjct: 292  AKLGCCLIELLTQSAYVQPPVNQSADSPPDVRPAFRHIFKIATRLPGQTIVKRYGVIECD 351

Query: 2600 SLVRQGLDRTARHMVIPYVPMLIPPRKWKGYERGGHLFLPSYVMRTHGARQQQDAIKSVP 2421
             LV  GLD+T +HM+IPYVPML+PP+KWKGY+RGG+LFLPSY+MRTHG+R QQDA+K+V 
Sbjct: 352  PLVLAGLDKTVKHMIIPYVPMLVPPKKWKGYDRGGYLFLPSYLMRTHGSRHQQDAVKTVT 411

Query: 2420 IKQMQKVFEALDTLGQTKWRVNKRVLVVVEDFWKKGGNVAGLVNREDVAVPEKPLSEDAM 2241
             KQMQKV+EALDTLG TKWRVNKR+L VVE+ W  GGN+AGLVNRED+ +PE  LSED  
Sbjct: 412  SKQMQKVYEALDTLGNTKWRVNKRILTVVENIWAAGGNIAGLVNREDIPIPELLLSEDMK 471

Query: 2240 EIQKWKWSVRKVKKCNRERHAQRCDIELKLSVARRMKNEEGFYYPHNLDFRGRAYPMHPH 2061
            E +KWKWSVRKVKK N+ERH+QRCD ELKLSVAR+MK+EEGFYYPHNLDFRGRAYPMHPH
Sbjct: 472  EAKKWKWSVRKVKKINQERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPH 531

Query: 2060 LNHLSSDLCRGVLEFAEGRPLGKSGLQWLKIHLSNLYGGGVEKLSYDGRLTFVENHLNDI 1881
            LNHLSSDLCRGVLEFAEGRPLGKSGL+WLKIH++NLYGGGVEKLSYD R+ FVEN++++I
Sbjct: 532  LNHLSSDLCRGVLEFAEGRPLGKSGLRWLKIHVANLYGGGVEKLSYDDRVAFVENNISEI 591

Query: 1880 LDSADKPVDGKRWWLNAEDPFQCLAACINLSEALKSSAPYTVLSHLPIHQDGSCNGLQHY 1701
             DSAD  ++G RWWL AEDPFQCLAACINL EALKS +P+TV+SHLPIHQDGSCNGLQHY
Sbjct: 592  FDSADNSLNGNRWWLKAEDPFQCLAACINLVEALKSPSPHTVISHLPIHQDGSCNGLQHY 651

Query: 1700 AALGRDSXXXXXXXXXXXERPADVYSEIAARVLDIMKRDCKKDPAIDPVAVLAKVLIGQV 1521
            AALGRDS           ++P+DVYSEIA RV +IMKRD +KDP  D  A++AKVLIGQV
Sbjct: 652  AALGRDSFEAAAVNLVAGDKPSDVYSEIAERVHNIMKRDSEKDPETDRHALIAKVLIGQV 711

Query: 1520 DRKLVKQTVMTSVYGVTYVGAREQIKRRLEERGEITDDRLLFGAACYAAKVTLTALGEMF 1341
            DRKLVKQTVMTSVYGVTYVGAREQIKRRLEE+G ITDD+LLF AACYAAKVTL ALGE+F
Sbjct: 712  DRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLITDDKLLFSAACYAAKVTLAALGELF 771

Query: 1340 QAARGIMGWLGECAKIIASENQPVRWTTPLGLPVVQPYRKSERHLIRTSLQVLALQREGD 1161
            QAAR IM WLG+CAKIIASEN+PVRWTTPLGLPVVQPY KS+RH+IRTSLQVLALQREGD
Sbjct: 772  QAARAIMAWLGDCAKIIASENEPVRWTTPLGLPVVQPYFKSQRHVIRTSLQVLALQREGD 831

Query: 1160 FVEVKRQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQILR 981
             VEV++QRTAFPPNFVHSLDGSHMMMTA+ACRDAGL FAGVHDSFWTHACDVD MNQILR
Sbjct: 832  SVEVRKQRTAFPPNFVHSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDRMNQILR 891

Query: 980  EKFIELYSVPILDKLLESFQTSXXXXXXXXXPDRGDFDLKHVLDSPYFFN 831
            +KF++LYS+PIL+ LLESF+TS         P+RGDF L+ V++SPYFFN
Sbjct: 892  QKFVDLYSMPILENLLESFETSYPTLKFPPLPNRGDFLLEQVIESPYFFN 941


>ref|XP_004287148.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Fragaria
            vesca subsp. vesca]
          Length = 973

 Score = 1231 bits (3184), Expect = 0.0
 Identities = 610/908 (67%), Positives = 713/908 (78%), Gaps = 22/908 (2%)
 Frame = -3

Query: 3488 LQTHTLSESV------SLDN-----------RVFTEDPPWMASFLSSN-----HTNHKLA 3375
            +Q H L++SV      +L+N           R+F +DPPW+AS          +   K+ 
Sbjct: 68   IQFHPLNDSVQDNLVENLENSIKFQVPISEPRIFIQDPPWIASLFLKGMFKKVNKELKVE 127

Query: 3374 LHDMERKKHALLRRRQVKAETEAWERTAQEYREFEREMCQNKLAPCLPYVKSLFLGWFEP 3195
              +++R+K+ LLRRRQ+KAETEAWE+  ++Y++ ER M + KLAP LPYVK+LFLGWFEP
Sbjct: 128  SKEIDRRKYNLLRRRQIKAETEAWEKMVEDYKDLERVMREKKLAPSLPYVKALFLGWFEP 187

Query: 3194 LKQAIXXXXXXXXXXXXXXXXXXXXXXXXADKMAVIVMHKMMGLLMIGQDDACVRVVQAA 3015
            L++AI                        ADKMA+IVMHK+MGL+M+G  D CV+VVQAA
Sbjct: 188  LREAIAKEQKAQQTKKHKQAFAPHIDLLPADKMALIVMHKLMGLVMMGNQDGCVQVVQAA 247

Query: 3014 IHIGEAIEQEVRIHNFLERTKKFRNRKKIEDDEHESVRKNQEILRXXXXXXXXXXXXXXX 2835
            +HIG AIEQEVRIH+FLE++K  + +K    DE + + K +EILR               
Sbjct: 248  VHIGMAIEQEVRIHSFLEKSKSLQRKKTSVADE-DGLSKEKEILRKRVNGLIRRKRLVEV 306

Query: 2834 XXXXKSEDGTMSWGRDAQAKLGSRLIELLIETAFVQPPANQLPDDPPEIRPAFRHTFKTM 2655
                K ED    WGRD QAKLGSRLIELL ETA VQPP +QL D PP++RPAFRH  K  
Sbjct: 307  QKLLKKED-MKPWGRDTQAKLGSRLIELLTETAHVQPPLDQLADGPPDVRPAFRHRLKAA 365

Query: 2654 VKEPGRKGGNRYGVIDCDSLVRQGLDRTARHMVIPYVPMLIPPRKWKGYERGGHLFLPSY 2475
             K PG+K    YGVI+CD LV  GLD+TA+HM+IPYVPML+PP++WKGY++GGHLFLPSY
Sbjct: 366  AKSPGQKLVKNYGVIECDPLVLAGLDKTAKHMLIPYVPMLVPPKRWKGYDKGGHLFLPSY 425

Query: 2474 VMRTHGARQQQDAIKSVPIKQMQKVFEALDTLGQTKWRVNKRVLVVVEDFWKKGGNVAGL 2295
            VMRTHG+R+Q D ++++  +QMQKVFEALD LG TKWR+NK+VL VVE  W +GGN+AGL
Sbjct: 426  VMRTHGSRKQVDTMRNISGRQMQKVFEALDMLGSTKWRINKKVLNVVESIWARGGNIAGL 485

Query: 2294 VNREDVAVPEKPLSEDAMEIQKWKWSVRKVKKCNRERHAQRCDIELKLSVARRMKNEEGF 2115
            V+REDV VPEKP SED  EIQ+W+WS RK KK N+ERH+QRCD ELKLSVARRMK+E+GF
Sbjct: 486  VDREDVPVPEKPPSEDPTEIQEWRWSARKAKKLNQERHSQRCDTELKLSVARRMKDEDGF 545

Query: 2114 YYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLQWLKIHLSNLYGGGVE 1935
            YYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGL+WLKIHL+NLY GGVE
Sbjct: 546  YYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYSGGVE 605

Query: 1934 KLSYDGRLTFVENHLNDILDSADKPVDGKRWWLNAEDPFQCLAACINLSEALKSSAPYTV 1755
            KLSYDGR++FV+NH++DI DSA  PV+G RWWL AEDP QCLAACINLSEAL S +P+TV
Sbjct: 606  KLSYDGRISFVDNHIDDIFDSATNPVNGNRWWLTAEDPLQCLAACINLSEALNSPSPHTV 665

Query: 1754 LSHLPIHQDGSCNGLQHYAALGRDSXXXXXXXXXXXERPADVYSEIAARVLDIMKRDCKK 1575
            +SHLPIHQDGSCNGLQHYAALGRD+           E+PADVYSEIA RV DIMKRD  K
Sbjct: 666  ISHLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAGEKPADVYSEIAVRVHDIMKRDSNK 725

Query: 1574 DPAIDPVAVLAKVLIGQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEERGEITDDRLLF 1395
            DP  +P A+LAKVL+ Q+DRKLVKQTVMTSVYGVTYVGAREQIKRRLEE+G ITDDRLLF
Sbjct: 726  DPTTNPNALLAKVLVNQIDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLITDDRLLF 785

Query: 1394 GAACYAAKVTLTALGEMFQAARGIMGWLGECAKIIASENQPVRWTTPLGLPVVQPYRKSE 1215
             AACYAAKVTL ALGE+FQAARGIM WLG+CAK+IASENQPVRWTTPLGLPVVQPY KSE
Sbjct: 786  TAACYAAKVTLAALGEIFQAARGIMSWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKSE 845

Query: 1214 RHLIRTSLQVLALQREGDFVEVKRQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVH 1035
            RHLIRTSLQVLALQRE + V+V++QRTAFPPNFVHSLDGSHMMMTA+ACRDAG+ FAGVH
Sbjct: 846  RHLIRTSLQVLALQRESNLVDVRKQRTAFPPNFVHSLDGSHMMMTALACRDAGIRFAGVH 905

Query: 1034 DSFWTHACDVDEMNQILREKFIELYSVPILDKLLESFQTSXXXXXXXXXPDRGDFDLKHV 855
            DSFWTHACDVD+MNQILRE F+ELYS PIL+ LLESFQ +         P+RGDFDL+ V
Sbjct: 906  DSFWTHACDVDQMNQILRENFVELYSKPILENLLESFQAAYPELTFPPLPERGDFDLQEV 965

Query: 854  LDSPYFFN 831
            L SPYFFN
Sbjct: 966  LKSPYFFN 973


>ref|XP_012837864.1| PREDICTED: DNA-directed RNA polymerase 3B, chloroplastic [Erythranthe
            guttatus]
          Length = 953

 Score = 1230 bits (3183), Expect = 0.0
 Identities = 606/881 (68%), Positives = 702/881 (79%), Gaps = 8/881 (0%)
 Frame = -3

Query: 3449 NRVFTEDPPWMAS-------FLSSNHTNHKLALHDMERKKHALLRRRQVKAETEAWERTA 3291
            +RVF +DPPW++S       F S N    K+   +MER+K+ LLRRRQVKAETEAWE   
Sbjct: 75   DRVFIQDPPWISSLFMKNLLFRSRNRGGVKIEFQEMERRKYYLLRRRQVKAETEAWENKV 134

Query: 3290 QEYREFEREMCQNKLAPCLPYVKSLFLGWFEPLKQAIXXXXXXXXXXXXXXXXXXXXXXX 3111
            +EYRE EREMC+ KLAP LPYVK L LGWFEPL++AI                       
Sbjct: 135  EEYRELEREMCEKKLAPNLPYVKKLILGWFEPLREAIEKEQNTQRSKKNKAAFAPFIDAL 194

Query: 3110 XADKMAVIVMHKMMGLLMIG-QDDACVRVVQAAIHIGEAIEQEVRIHNFLERTKKFRNRK 2934
             ADKMAVIVMHKMMGLLM+G ++D CVRVV+AA+ IG A+E EVRIH+FLE+ KK  N K
Sbjct: 195  PADKMAVIVMHKMMGLLMMGGKEDRCVRVVEAAVQIGVAVENEVRIHSFLEKMKK--NEK 252

Query: 2933 KIEDDEHESVRKNQEILRXXXXXXXXXXXXXXXXXXXKSEDGTMSWGRDAQAKLGSRLIE 2754
            +   DE +    N+ ++                       +   SWGRD QAKLG  LIE
Sbjct: 253  REIGDESQVDSSNEAVIMRKRVKSLIKRNRVIEVHKLVRSEEFKSWGRDIQAKLGCCLIE 312

Query: 2753 LLIETAFVQPPANQLPDDPPEIRPAFRHTFKTMVKEPGRKGGNRYGVIDCDSLVRQGLDR 2574
            LL ++A+VQPP NQ  D PP++RPAFRH FK   + PG+    RYGVI+CD LV  GLD+
Sbjct: 313  LLTQSAYVQPPVNQSADSPPDVRPAFRHIFKIATRLPGQTIVKRYGVIECDPLVLAGLDK 372

Query: 2573 TARHMVIPYVPMLIPPRKWKGYERGGHLFLPSYVMRTHGARQQQDAIKSVPIKQMQKVFE 2394
            T +HM+IPYVPML+PP+KWKGY+RGG+LFLPSY+MRTHG+R QQDA+K+V  KQMQKV+E
Sbjct: 373  TVKHMIIPYVPMLVPPKKWKGYDRGGYLFLPSYLMRTHGSRHQQDAVKTVTSKQMQKVYE 432

Query: 2393 ALDTLGQTKWRVNKRVLVVVEDFWKKGGNVAGLVNREDVAVPEKPLSEDAMEIQKWKWSV 2214
            ALDTLG TKWRVNKR+L VVE+ W  GGN+AGLVNRED+ +PE  LSED  E +KWKWSV
Sbjct: 433  ALDTLGNTKWRVNKRILTVVENIWAAGGNIAGLVNREDIPIPELLLSEDMKEAKKWKWSV 492

Query: 2213 RKVKKCNRERHAQRCDIELKLSVARRMKNEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLC 2034
            RKVKK N+ERH+QRCD ELKLSVAR+MK+EEGFYYPHNLDFRGRAYPMHPHLNHLSSDLC
Sbjct: 493  RKVKKINQERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLC 552

Query: 2033 RGVLEFAEGRPLGKSGLQWLKIHLSNLYGGGVEKLSYDGRLTFVENHLNDILDSADKPVD 1854
            RGVLEFAEGRPLGKSGL+WLKIH++NLYGGGVEKLSYD R+ FVEN++++I DSAD  ++
Sbjct: 553  RGVLEFAEGRPLGKSGLRWLKIHVANLYGGGVEKLSYDDRVAFVENNISEIFDSADNSLN 612

Query: 1853 GKRWWLNAEDPFQCLAACINLSEALKSSAPYTVLSHLPIHQDGSCNGLQHYAALGRDSXX 1674
            G RWWL AEDPFQCLAACINL EALKS +P+TV+SHLPIHQDGSCNGLQHYAALGRDS  
Sbjct: 613  GNRWWLKAEDPFQCLAACINLVEALKSPSPHTVISHLPIHQDGSCNGLQHYAALGRDSFE 672

Query: 1673 XXXXXXXXXERPADVYSEIAARVLDIMKRDCKKDPAIDPVAVLAKVLIGQVDRKLVKQTV 1494
                     ++P+DVYSEIA RV +IMKRD +KDP  D  A++AKVLIGQVDRKLVKQTV
Sbjct: 673  AAAVNLVAGDKPSDVYSEIAERVHNIMKRDSEKDPETDRHALIAKVLIGQVDRKLVKQTV 732

Query: 1493 MTSVYGVTYVGAREQIKRRLEERGEITDDRLLFGAACYAAKVTLTALGEMFQAARGIMGW 1314
            MTSVYGVTYVGAREQIKRRLEE+G ITDD+LLF AACYAAKVTL ALGE+FQAAR IM W
Sbjct: 733  MTSVYGVTYVGAREQIKRRLEEKGLITDDKLLFSAACYAAKVTLAALGELFQAARAIMAW 792

Query: 1313 LGECAKIIASENQPVRWTTPLGLPVVQPYRKSERHLIRTSLQVLALQREGDFVEVKRQRT 1134
            LG+CAKIIASEN+PVRWTTPLGLPVVQPY KS+RH+IRTSLQVLALQREGD VEV++QRT
Sbjct: 793  LGDCAKIIASENEPVRWTTPLGLPVVQPYFKSQRHVIRTSLQVLALQREGDSVEVRKQRT 852

Query: 1133 AFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQILREKFIELYSV 954
            AFPPNFVHSLDGSHMMMTA+ACRDAGL FAGVHDSFWTHACDVD MNQILR+KF++LYS+
Sbjct: 853  AFPPNFVHSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDRMNQILRQKFVDLYSM 912

Query: 953  PILDKLLESFQTSXXXXXXXXXPDRGDFDLKHVLDSPYFFN 831
            PIL+ LLESF+TS         P+RGDF L+ V++SPYFFN
Sbjct: 913  PILENLLESFETSYPTLKFPPLPNRGDFLLEQVIESPYFFN 953


>ref|XP_002308414.1| hypothetical protein POPTR_0006s19490g [Populus trichocarpa]
            gi|222854390|gb|EEE91937.1| hypothetical protein
            POPTR_0006s19490g [Populus trichocarpa]
          Length = 982

 Score = 1230 bits (3183), Expect = 0.0
 Identities = 612/877 (69%), Positives = 703/877 (80%), Gaps = 5/877 (0%)
 Frame = -3

Query: 3446 RVFTEDPPWMAS-FLSSNHT----NHKLALHDMERKKHALLRRRQVKAETEAWERTAQEY 3282
            RVF  D PW+++ +    H       KL L D+E++K+ LLRRRQ++ ETEAWER A+EY
Sbjct: 108  RVFIRDSPWISALYWKGTHKIANKKVKLELKDIEKRKYNLLRRRQIREETEAWERMAEEY 167

Query: 3281 REFEREMCQNKLAPCLPYVKSLFLGWFEPLKQAIXXXXXXXXXXXXXXXXXXXXXXXXAD 3102
                +EMC+ KLAP LPYVKSLFLGWFEPLK+AI                        AD
Sbjct: 168  TGLVKEMCERKLAPNLPYVKSLFLGWFEPLKEAIEREQKLEKSKKQKSAFSPNIELLPAD 227

Query: 3101 KMAVIVMHKMMGLLMIGQDDACVRVVQAAIHIGEAIEQEVRIHNFLERTKKFRNRKKIED 2922
            KMAVIVMHKMMGL+M+G +D CVRVVQAA+ IG AIEQEVRIHNFLE+TK  + RKK   
Sbjct: 228  KMAVIVMHKMMGLVMVGHEDGCVRVVQAAVQIGIAIEQEVRIHNFLEKTKNHQ-RKKTMH 286

Query: 2921 DEHESVRKNQEILRXXXXXXXXXXXXXXXXXXXKSEDGTMSWGRDAQAKLGSRLIELLIE 2742
            D  ES+ K +E+LR                     +D T  W RD QAKLGSRLIELL E
Sbjct: 287  DVQESMDKEKEMLRKRVNSLIRRKRLMEVQNLVI-QDETKPWNRDKQAKLGSRLIELLTE 345

Query: 2741 TAFVQPPANQLPDDPPEIRPAFRHTFKTMVKEPGRKGGNRYGVIDCDSLVRQGLDRTARH 2562
            TA+VQPP +Q    PP++RPAFRH FK++ K PG+K   +YGVI+CD L+  GLD TA+H
Sbjct: 346  TAYVQPPVDQSEGIPPDVRPAFRHIFKSVTKNPGQKTVKKYGVIECDPLILTGLDGTAKH 405

Query: 2561 MVIPYVPMLIPPRKWKGYERGGHLFLPSYVMRTHGARQQQDAIKSVPIKQMQKVFEALDT 2382
            M+IPY PML+PP+KW+GY++GGHLFLPSY+MRTHG+RQQQDA++SVP KQMQKVFEALDT
Sbjct: 406  MLIPYFPMLVPPKKWRGYDKGGHLFLPSYIMRTHGSRQQQDAVRSVPGKQMQKVFEALDT 465

Query: 2381 LGQTKWRVNKRVLVVVEDFWKKGGNVAGLVNREDVAVPEKPLSEDAMEIQKWKWSVRKVK 2202
            LG TKWRVN +VL VVE  W  GGN AGLVNR D+ +PEK  S+D  EIQKWKWSVRK K
Sbjct: 466  LGNTKWRVNGKVLDVVERIWASGGNNAGLVNRGDIPIPEKLSSDDLTEIQKWKWSVRKAK 525

Query: 2201 KCNRERHAQRCDIELKLSVARRMKNEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVL 2022
            K N+ERH+QRCD ELKLSVAR++K+EEGFYYPHNLDFRGRAYPMHPHL HLSSDLCRGVL
Sbjct: 526  KINQERHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLTHLSSDLCRGVL 585

Query: 2021 EFAEGRPLGKSGLQWLKIHLSNLYGGGVEKLSYDGRLTFVENHLNDILDSADKPVDGKRW 1842
            EFAEGRPLGKSGL WLKIHL+NLY GGVEKLS+DGRL FVENHL++I DSA+ PV+GKRW
Sbjct: 586  EFAEGRPLGKSGLCWLKIHLANLYSGGVEKLSHDGRLAFVENHLSEIFDSAENPVNGKRW 645

Query: 1841 WLNAEDPFQCLAACINLSEALKSSAPYTVLSHLPIHQDGSCNGLQHYAALGRDSXXXXXX 1662
            WL AEDPFQCLAACINLSEALKS++P+TV+SHLPIHQDGSCNGLQHYAALGRDS      
Sbjct: 646  WLTAEDPFQCLAACINLSEALKSASPHTVISHLPIHQDGSCNGLQHYAALGRDSQEAAAV 705

Query: 1661 XXXXXERPADVYSEIAARVLDIMKRDCKKDPAIDPVAVLAKVLIGQVDRKLVKQTVMTSV 1482
                 E+P+DVYSEIA RV +I++RD  KDPA +P A+LAKVLI +VDRKLVKQTVMTSV
Sbjct: 706  NLVAAEKPSDVYSEIATRVHEIIRRDSNKDPATNPHALLAKVLIDEVDRKLVKQTVMTSV 765

Query: 1481 YGVTYVGAREQIKRRLEERGEITDDRLLFGAACYAAKVTLTALGEMFQAARGIMGWLGEC 1302
            YGVTYVGAREQIKRRLEE+G ITDDR+LF AACYAAKVTLTALGE+FQAAR IMGWLG+C
Sbjct: 766  YGVTYVGAREQIKRRLEEKGHITDDRVLFSAACYAAKVTLTALGELFQAARDIMGWLGDC 825

Query: 1301 AKIIASENQPVRWTTPLGLPVVQPYRKSERHLIRTSLQVLALQREGDFVEVKRQRTAFPP 1122
            AK+IASE+QPVRWTTPLGLPVVQPY K++RHLIRTSLQVLALQREG  V+V++QRTAFPP
Sbjct: 826  AKVIASEDQPVRWTTPLGLPVVQPYYKTQRHLIRTSLQVLALQREGSSVQVRKQRTAFPP 885

Query: 1121 NFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQILREKFIELYSVPILD 942
            NFVHSLDGSHMMMTAVACRDA L FAGVHDSFWTHA D D MN+ILREKF+ELY++PIL+
Sbjct: 886  NFVHSLDGSHMMMTAVACRDADLRFAGVHDSFWTHARDADLMNRILREKFVELYNMPILE 945

Query: 941  KLLESFQTSXXXXXXXXXPDRGDFDLKHVLDSPYFFN 831
             LLE FQTS         P+RG+FDL+ VL SPYFFN
Sbjct: 946  NLLEDFQTSYPTLKFPSLPERGNFDLQEVLRSPYFFN 982


>ref|XP_007013878.1| DNA/RNA polymerases superfamily protein isoform 2 [Theobroma cacao]
            gi|508784241|gb|EOY31497.1| DNA/RNA polymerases
            superfamily protein isoform 2 [Theobroma cacao]
          Length = 857

 Score = 1228 bits (3176), Expect = 0.0
 Identities = 602/854 (70%), Positives = 700/854 (81%), Gaps = 3/854 (0%)
 Frame = -3

Query: 3383 KLALHDMERKKHALLRRRQVKAETEAWERTAQEYREFEREMCQNKLAPCLPYVKSLFLGW 3204
            K+   ++E++K+ LLRRRQVK ETEAWE+  +EYRE +REMC+ KLAP LPYVK LFLGW
Sbjct: 7    KIEHKEIEKRKYNLLRRRQVKEETEAWEKMVEEYRELQREMCEKKLAPNLPYVKGLFLGW 66

Query: 3203 FEPLKQAIXXXXXXXXXXXXXXXXXXXXXXXXA--DKMAVIVMHKMMGLLMIGQDDACVR 3030
            FEP+++AI                           DKMAVIVMHKMMGL+M  Q++  V+
Sbjct: 67   FEPMREAIAREQKVQKGKSKKLRAAYAPHIELLPADKMAVIVMHKMMGLVMGAQENGFVQ 126

Query: 3029 VVQAAIHIGEAIEQEVRIHNFLERTKKFRNRKKIEDDEHESVRKNQEILRXXXXXXXXXX 2850
            VVQAA+HIG AIEQEVRIHNFLE+TK ++ +K    DE + + K +EIL+          
Sbjct: 127  VVQAAVHIGVAIEQEVRIHNFLEKTKNYQRKKTT--DEVQGLSKEKEILKKRVNSLIRRR 184

Query: 2849 XXXXXXXXXKSEDGTMSWGRDAQAKLGSRLIELLIETAFVQPPANQLPDDPPEIRPAFRH 2670
                     K+E+    WGRDAQAKLGSRL+ELL ETA+VQPP +Q  D PP+++PAFRH
Sbjct: 185  RLVEVQKLVKNEE-IKPWGRDAQAKLGSRLLELLTETAYVQPPIDQSGDSPPDVQPAFRH 243

Query: 2669 TFKTMVKEPGRKGGNRYGVIDCDSLVRQGLDRTARHMVIPYVPMLIPPRKWKGYERGGHL 2490
             FKT+ K+PG+K   RYGVI+CD L+  GLDR+A+HM+IPYVPML+PP+KWKGY++GG+L
Sbjct: 244  KFKTISKDPGKKMMKRYGVIECDPLILSGLDRSAKHMLIPYVPMLVPPKKWKGYDKGGYL 303

Query: 2489 FLPSYVMRTHGARQQQDAIKSVPIKQMQKVFEALDTLGQTKWRVNKRVLVVVEDFWKKGG 2310
            FLPSYVMRTHG+R+QQDA+K V +K+MQKVFEALDTLG TKWRVNK+VL VVE  W  GG
Sbjct: 304  FLPSYVMRTHGSRKQQDALKGVHVKKMQKVFEALDTLGSTKWRVNKKVLAVVESIWASGG 363

Query: 2309 NVAGLVNREDVAVPEKPLSEDAMEIQKWKWSVRKVKKCNRERHAQRCDIELKLSVARRMK 2130
            N+AGLV+R D+ +PEKP SED+ E Q+WKWSVRK  K NRERH+QRCD ELKLSVAR+M+
Sbjct: 364  NIAGLVDRNDIPIPEKPSSEDSTESQEWKWSVRKANKINRERHSQRCDTELKLSVARKME 423

Query: 2129 NEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLQWLKIHLSNLY 1950
            NEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLG+SGL WLKIHL+NL+
Sbjct: 424  NEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGRSGLHWLKIHLANLF 483

Query: 1949 GGGVEKLSYDGRLTFVENHLNDILDSADKPVDGKRWWLNAEDPFQCLAACINLSEALKSS 1770
             GGVEKLS+DGRL FV+NHL+DI DSA+ P++G RWWL AEDPFQCLAACINLSE+LKSS
Sbjct: 484  AGGVEKLSHDGRLAFVDNHLDDIFDSAENPINGNRWWLTAEDPFQCLAACINLSESLKSS 543

Query: 1769 APYTVLSHLPIHQDGSCNGLQHYAALGRDSXXXXXXXXXXXERPADVYSEIAARVLDIMK 1590
            +P++VLS+LPIHQDGSCNGLQHYAALGRDS           E+PADVYSEIA RV +IMK
Sbjct: 544  SPHSVLSYLPIHQDGSCNGLQHYAALGRDSLEAAAVNLVAGEKPADVYSEIAVRVHNIMK 603

Query: 1589 RDCKKDPAIDPVAVLAKVLIGQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEERGEITD 1410
            RD  KDPA +P A LAK+LI QVDRKLVKQTVMTSVYGVT+VGAREQIKRRLEE+G ITD
Sbjct: 604  RDSDKDPATNPNASLAKLLIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITD 663

Query: 1409 DRLLFGAACYAAKVTLTALGEMFQAARGIMGWLGECAKIIASENQPVRWTTPLGLPVVQP 1230
            DR+LF AACY AKVTL ALGE+FQAAR IMGWLG+CAK+IASENQPV+WTTPLGLPVVQP
Sbjct: 664  DRVLFAAACYTAKVTLAALGELFQAARNIMGWLGDCAKVIASENQPVQWTTPLGLPVVQP 723

Query: 1229 YRKSERHLIRTSLQVLALQREGD-FVEVKRQRTAFPPNFVHSLDGSHMMMTAVACRDAGL 1053
            Y KSERHLIRTSLQVLALQREGD  VEV++QRTAFPPNFVHSLDGSHMMMTAVACRDAGL
Sbjct: 724  YYKSERHLIRTSLQVLALQREGDSVVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGL 783

Query: 1052 HFAGVHDSFWTHACDVDEMNQILREKFIELYSVPILDKLLESFQTSXXXXXXXXXPDRGD 873
            HFAGVHDSFWTHACDV++MNQILREKF+ELYS+P+L+ L ES QTS         P+RG+
Sbjct: 784  HFAGVHDSFWTHACDVEKMNQILREKFVELYSMPVLENLFESVQTSYPSLVFPPLPERGN 843

Query: 872  FDLKHVLDSPYFFN 831
            FDL+ VL SPYFFN
Sbjct: 844  FDLREVLKSPYFFN 857