BLASTX nr result
ID: Aconitum23_contig00000308
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Aconitum23_contig00000308
(9498 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ADO34171.1| polyprotein [Lily mottle virus] 3236 0.0
gb|AEN25480.2| polyprotein [Lily mottle virus] 3223 0.0
dbj|BAJ10467.1| polyprotein [Lily mottle virus] 3214 0.0
emb|CAJ15516.1| polyprotein [Lily mottle virus] 3213 0.0
ref|NP_945133.1| polyprotein [Lily mottle virus] gi|38707331|emb... 3204 0.0
gb|ADC95428.1| polyprotein [Lily mottle virus] 3194 0.0
dbj|BAJ08151.1| polyprotein [Turnip mosaic virus] 2973 0.0
dbj|BAJ08152.1| polyprotein [Turnip mosaic virus] 2969 0.0
dbj|BAC79393.1| polyprotein [Turnip mosaic virus] 2959 0.0
dbj|BAQ56283.1| polyprotein [Turnip mosaic virus] 2959 0.0
dbj|BAM99214.1| polyprotein [Turnip mosaic virus] 2959 0.0
dbj|BAF31167.1| polyprotein [Turnip mosaic virus] 2959 0.0
gb|AJT58567.1| polyprotein [Turnip mosaic virus] 2958 0.0
dbj|BAQ56288.1| polyprotein [Turnip mosaic virus] 2958 0.0
dbj|BAM99251.1| polyprotein [Turnip mosaic virus] 2958 0.0
dbj|BAM99238.1| polyprotein [Turnip mosaic virus] 2958 0.0
dbj|BAQ56309.1| polyprotein [Turnip mosaic virus] 2957 0.0
dbj|BAM99241.1| polyprotein [Turnip mosaic virus] 2957 0.0
dbj|BAQ56296.1| polyprotein [Turnip mosaic virus] 2957 0.0
dbj|BAQ56293.1| polyprotein [Turnip mosaic virus] 2957 0.0
>gb|ADO34171.1| polyprotein [Lily mottle virus]
Length = 3096
Score = 3236 bits (8391), Expect = 0.0
Identities = 1634/3110 (52%), Positives = 2160/3110 (69%), Gaps = 41/3110 (1%)
Frame = -2
Query: 9398 MASFMIG--TFKFTETASKSYKAQQMSDGDVLVKE-------------------YENNIA 9282
MASFM+G T +S+ + ++ VLV + YE +A
Sbjct: 1 MASFMVGSITVNTASVLKESFAQKVLTTPPVLVAQPVQRSFDAARMCARKAIADYEEKVA 60
Query: 9281 KAFAKLDACAPNGDKYLGATVKRVKNTQYFTLEEKP-QARAVARLDLLERETTHKWLTQW 9105
KAF+ L+A +G RVK + TL +P R ARL ER+ + ++
Sbjct: 61 KAFSALEARCAARVSRMGTI--RVKVMRSGTLRAQPLPKREQARLRKAERKARLEH-EEF 117
Query: 9104 EAGAQSVEAIVEPSAPRAQTVSEYRRPLAIDDKP--SLAKRTKRVVH---TPIRYSVENI 8940
G+ +V A + A AQ + P++ P S +KR ++ T + ++
Sbjct: 118 LKGSPTVIAHIS-IAGGAQPSQDMVEPMSTRKAPWHSASKRARKATPRSPTLNETGLASL 176
Query: 8939 IRAIANQNKNCKLDLEIISTKKATRARHTMWRNRLYVKAQTKHELGVRHKRDILVCEWGR 8760
+RAIA +EI+ K+ +AR+ Y++ + H G+R +RD+ + +
Sbjct: 177 MRAIAKIGAKNSTKVEIVD-KRRVQARYIKRDAGSYLQVRVAHHEGLRRRRDLKLSAFAD 235
Query: 8759 QVLRLLVSKTAGNRAHDANMFTQGSSGIIIMSHCLSGNVSASRGNLFIVRGRDGEKLYDS 8580
Q L LVS T G + H G SGI++++ L G S S +F+VRG KLY++
Sbjct: 236 QCLTQLVSTTHGTKYHHVTQLKAGDSGIVLLARRLFGWHSGSCSQIFVVRGNHEGKLYEA 295
Query: 8579 QSVVTSHVASRMRHYSA-GERFWKGYGRGFNSHTPS-VGHQCRSDLDVEECGYVAAMATQ 8406
+ VT + +M HYS G++FW G+ F P + H C S+ +V ECG VAA+ Q
Sbjct: 296 RRKVTLTMTHKMVHYSGPGDKFWAGFNSQFLRIKPKEIPHTCTSNFNVFECGQVAALMCQ 355
Query: 8405 VLFPCGHITCQQCADNFVSCSKNDLKEEYGTRIQGLIDEVQNKHPKFAHVVKFLSLFNDY 8226
L+PCG ITCQQCA ++ +K +L E+ + +++ H +FAHV L++ D
Sbjct: 356 ALYPCGRITCQQCASEYLELTKVELGEKLSDGLYRTSSQIRENHQEFAHVAHILTVIADL 415
Query: 8225 LRFSNENIRQFSEAKRIIGDRKEAPFQQLAALNDLLIKVGECTSEEAALGTANLLELVRF 8046
L N N+ F++ ++IG++ ++PF L LN +LIK + +S E + + EL RF
Sbjct: 416 LSLKNNNMEAFTDVHKLIGEQTQSPFTHLNRLNSILIKGSDMSSNELHECSDCIRELARF 475
Query: 8045 QKNRTDNISGTSLTHFRNKVSSKIHVNLDLMCDNQLDDDGNFKWRQRGFHAKRMFDNFYE 7866
QKNRTDNI ++ FRNK SSK + NLDLMCDNQLD +GNF+W QRG+HAKR N++E
Sbjct: 476 QKNRTDNIKKLDVSVFRNKASSKSYFNLDLMCDNQLDKNGNFEWGQRGYHAKRFLSNYFE 535
Query: 7865 VVNPSKGYDSFIVRTNPNGVRKTAIGNLVISTNMATFREQMRGEPVEPQALSLACTSKLK 7686
VVN Y +R +PNG+R+ AIG ++STN FR+ M G+ + ++ AC S+
Sbjct: 536 VVNTQNAYREHTLRKHPNGMRELAIGKFIVSTNFEVFRKSMEGKRIPQMPVTEACLSQRG 595
Query: 7685 GSYVYPCCCVTTDTGKPIESEMLAPTKDHLVIGNTGDSKFVTVPKILEDGMYVAKEGYCY 7506
++Y CCCVT + G P+ES PTK+ LV+GNTGD KFV +P ++ MY+A+EGYCY
Sbjct: 596 ERFIYQCCCVTNEDGTPLESTFKMPTKNTLVLGNTGDEKFVDMPTDTDEKMYIAREGYCY 655
Query: 7505 VNIFVAMLINVSDVQAKDYTRRVRDYAIPTLGKWPTLINLATVCHFLTILYPDIKSAELP 7326
+NIF AMLINV + QAK +T+ VRD +P LG WPT+I++AT CH LT+ +PD SAELP
Sbjct: 656 INIFFAMLINVRESQAKAFTKMVRDRLVPELGTWPTMIDVATACHTLTVFFPDTLSAELP 715
Query: 7325 RILVDHKTCTMHVVDSFGSLSTGYHILKANTVGQLIKFANDELESDMKLYAVGGLHGXXX 7146
RILVDH T TMHV+DS+GS+STGYH LKANTV QL+ FA+D L+S+MK Y VGG
Sbjct: 716 RILVDHNTKTMHVIDSYGSVSTGYHQLKANTVSQLVLFASDTLKSEMKHYQVGG-----R 770
Query: 7145 XXXXXXXXVIMLARGIYRPKELKSILEHDPTLLVYSLLSPCVLIAMYKNRTFELAVSEWL 6966
V +L + IYRPK +++++E +P L+ ++ SP VLIA++ + + E A++ W+
Sbjct: 771 KFTVEYEAVKLLIKAIYRPKLMRTLMEDEPYLICLAMCSPGVLIALFNSGSLETAINYWI 830
Query: 6965 QKDTEVASLCNQLEVVARKISVSKVLAVQQQLIAEQASQMIRSVERSQAHSPSRHFVRLL 6786
+ + A + L V+A K+SV++ L Q L+++ A+ +++ ++R+ A S V
Sbjct: 831 ARHKDTAQIFALLTVLATKVSVARTLTEQLALLSDDATDVLKIMDRTFATQHSVSLVHTF 890
Query: 6785 LARIIENQQMDKELIASGFTQLRLDGDLMREKKFLEALAHSWRDLSWSERCTSIWRSRKH 6606
L ++ E + D L+ SGF L + EK +L L SWRDLS E+C+ + S +
Sbjct: 891 LMQLEEKRHTDVSLVGSGFANLCATTHELMEKNYLAELDASWRDLSLLEKCSQMRWSFRS 950
Query: 6605 SQSGTGPSKSATSDDLNVTWRERFNSLRGGVAETIRDGRSKIGATIKRKSNELVGKVTCK 6426
Q + + S DLN + +L +R +K ++++ +G+ C
Sbjct: 951 PQQFSNELHPSASTDLNGRYNTSVRALSTRYMNNLRKSVCTKYHNMKIRTHQFIGRQVCN 1010
Query: 6425 LLLTSRLLCPDIFRMVNVLTVMYLLLQIFTGVRGHIQAHQQLKIEKQRLEDDLNFDMVMR 6246
+ S PD+ R V++L + ++L I + + + +LK + ++ ++ ++
Sbjct: 1011 SITGSSRFFPDLARWVHILAIFSIMLNIIRTINIYTSEYIRLKNCELSQIEEKRWNKLLH 1070
Query: 6245 LYNIFYERYPTNAPSLYEFEQYLQKTNQSAYQYYMKVCGPDADD-EKVEFQAKGACEIEL 6069
+++ E+ P+L EF ++L++ + Y + + + +D E+V+FQAK E L
Sbjct: 1071 TFDMM-EKLDGQKPTLIEFTKHLKQWDPELYSEFHSILQDEEEDTEEVQFQAKPDGERNL 1129
Query: 6068 ERTVAFVALIMMMFDAERSDCVYKVLSKLRGLMAPIGTESVAFQSIDTVKEILGETKMAI 5889
ER +A +AL MM+FDA+RSDCVYKVL+KL+GL+ + E V FQSID +++IL E +M I
Sbjct: 1130 ERIMAIIALTMMVFDADRSDCVYKVLNKLKGLLNTVHQEPVKFQSIDDIQDILEEREMVI 1189
Query: 5888 DIEIDTENHQMNRLKGTTFSDWWQNQISQGRTIPHYRTEGHFMEFTRANAQTVANSIAHS 5709
D EI ++H +N+L G TF WW NQ+ +PHYRTEG FMEFTRANA VAN IAH
Sbjct: 1190 DFEISADDHNINKLAGATFEQWWSNQMECNNVLPHYRTEGFFMEFTRANAAHVANEIAHG 1249
Query: 5708 EHNDLLIMGAVGSGKSTGLPFYLSKKGKVLIIEPTKPLAENVHKQLQGNPFMTQATLKMR 5529
H DLLI GAVGSGKSTGLPFYLSK+G+VL++EPT+PLA NVHKQL G+PF+ ATLKMR
Sbjct: 1250 PHKDLLIRGAVGSGKSTGLPFYLSKRGRVLMLEPTRPLASNVHKQLAGDPFLVSATLKMR 1309
Query: 5528 GCNVFGSAPIHVQTSGYALHYFAHNVAQLAEFKFIIFDECHVHDSAAMAFRCLLSEYDYG 5349
G FGSAPI V TSGYA HY+A+N QL +F+FIIFDECHV+DS+AMAFR LL+EY Y
Sbjct: 1310 GETTFGSAPITVMTSGYAFHYYANNPNQLRDFEFIIFDECHVNDSSAMAFRSLLAEYTYD 1369
Query: 5348 GKILKVSATPPGREAVFSTQHAVQVKMEENLTFQQFVQMQGTGANGDVIQSGDNILVYVS 5169
G+I+KVSATPPGRE F+TQH V++ E LTFQQFV +QGTGA GDV GDNILVYV+
Sbjct: 1370 GRIIKVSATPPGREVEFTTQHPVEIIPIERLTFQQFVAVQGTGAVGDVTTKGDNILVYVA 1429
Query: 5168 SYNEVDSLSKLLLDAKHKVTKVDGRTMKMGQVEIPTSGTRDKKHFIVATNIIENGVTLDI 4989
SY+EVD+LSK L++ HKVTKVDGRTMK+G VEI TSG++ KKHF+VATNIIENGVTLDI
Sbjct: 1430 SYSEVDNLSKGLVEKGHKVTKVDGRTMKVGGVEIITSGSQAKKHFVVATNIIENGVTLDI 1489
Query: 4988 DVVVDFGMKVVPELDSDNRLIRYTKVSISYGERIQRLGRVGRNKEGTALRIGATEKGLSA 4809
DVVVDFG+KVV E+D D+RL RY K SISYGERIQRLGRVGRNK G A+R+G TEKGL A
Sbjct: 1490 DVVVDFGLKVVAEVDIDSRLTRYIKKSISYGERIQRLGRVGRNKPGVAVRVGTTEKGLQA 1549
Query: 4808 VPNIVATEAAFYSFAYGLPVMTNGVAVGVVANCTVPQARTVLHFELPIFYMLHLVRFDGS 4629
+P ATEAAF FAYGLPVMTN V+ ++ NCTV QART++ FE+ FYM H VRFDG+
Sbjct: 1550 IPVTTATEAAFLCFAYGLPVMTNNVSTNILTNCTVLQARTMMLFEINPFYMCHFVRFDGT 1609
Query: 4628 MHPALHACLKGFKLRDSEIILNKMAIPNSGVKQWLTAGEYSRIGARNSVDEFTRIPFFSK 4449
MHP +H L +KLRDSEIILNK+AIPN G+ QW TA EYS G + ++ + R+PF S
Sbjct: 1610 MHPEVHKILTPYKLRDSEIILNKVAIPNKGLMQWPTAKEYSYQGFKMNIPDTVRLPFHSL 1669
Query: 4448 DVPDKIHEQVWEAVVTFKRDAGFGKIQSASACKVAYTLQTDAASITRTVCIIEELIKNEV 4269
D+P+++HE++W+ V T K DAGFG+I +ASACK+AYTL+TD ASI RT+ I+++LI+NE+
Sbjct: 1670 DIPERLHERMWQIVETHKGDAGFGRITTASACKIAYTLRTDVASIQRTIHILDKLIENEL 1729
Query: 4268 KKQEYFQTASGIDCGSG-FSLVSLTNAIRSRHMSNHTAENIAILEAAKGQLEEFRNLGID 4092
KKQEYF+ + C S FSL ++TNAIR+RH+ +HT EN+++L+AAK Q+ EF+N+ D
Sbjct: 1730 KKQEYFRNITSASCSSSSFSLTTITNAIRARHIKDHTVENVSVLQAAKAQILEFKNVTFD 1789
Query: 4091 -PTTRTVTDFGALECVQFQSADGISKQLGLKGKWNKPLITKDILVAGFTMFGGMWMIYNY 3915
+T++GALECVQFQ+ + +++ L LKG WNK L+T D+++ G +FG +WM+ +Y
Sbjct: 1790 LDHVNRMTEYGALECVQFQTLESMAQHLQLKGHWNKSLLTHDVVICGAVLFGCVWMVGSY 1849
Query: 3914 LK-------RAITTNVEFQASGKRQNQKRRFQIARNNKHAFEVNPDETDVEHYFGEAYGK 3756
K + NV+FQA KRQ Q+ RF+ AR+NKHA+EV+ D+ D++ YFG AY K
Sbjct: 1850 FKERCSGVVKRYNENVKFQAKNKRQRQRLRFREARDNKHAYEVHGDDADIQTYFGSAYTK 1909
Query: 3755 KAQGKGRTRGMGAKSRRFYNMYGFDPAEYTFARYVDPLTGYTLDESALTEVKLVQEHFGK 3576
K + KG TRGMG K+R+F NMY FDP EY+FARYVDPLTGYTLDE LT++ LVQ+HFG+
Sbjct: 1910 KGKTKGVTRGMGIKTRKFVNMYNFDPTEYSFARYVDPLTGYTLDEQTLTDIALVQDHFGR 1969
Query: 3575 IRHELRMREELEPEAIDYHKKIEVYFVKDLAKQVLKIDMDPHNPFEIGRNTESIAGYPER 3396
IR +L + E E + + ++EVYFVK+LA Q+LKIDM PHNP + E++AG+PER
Sbjct: 1970 IRRKLMEDDVFEKETLAQNARLEVYFVKNLASQILKIDMTPHNPLRVCDVIETVAGFPER 2029
Query: 3395 KGELRQMGKPTLMSPTLLPAQREYEFDEPVVFESKATFYGMRDYNPISSSVCLLANESDG 3216
ELRQ GKP +++ LP + Y E V FE+K+TF+G+RDYNPI++ VC L + SDG
Sbjct: 2030 DMELRQSGKPVMVTAAELPKENPYPEGEIVEFENKSTFHGLRDYNPIATCVCRLEHNSDG 2089
Query: 3215 YEREIHGIGYGSMIITNQHLFQHNNGTLSVQSHRGKFFIPNTTQLKMYPFPGRDLLIIQM 3036
+ ++GIGYGS IITNQHLF NNGT++++SH G + I N+TQL+++P GRD++IIQ+
Sbjct: 2090 HTSSLYGIGYGSYIITNQHLFIRNNGTINIESHHGTYHIRNSTQLQLFPIEGRDIVIIQL 2149
Query: 3035 PKDFPPFPQKLKFRSPVSGDRVCMIGSNFQDKYXXXXXXXXXXXSQKDESVFYRHWISTK 2856
PKDFPPF ++LKFR P + D+VC++G+NFQ+K ++KD+S F+RHWISTK
Sbjct: 2150 PKDFPPFARRLKFRHPTTTDKVCLVGTNFQEKTTTSTVSEASLITRKDDSHFFRHWISTK 2209
Query: 2855 TGHCGLPMVSVKDGYILGIHSLTSKDDASGFLISFPQDMEKNYLQNAEQVQWTKKWRLNV 2676
G CGLP VS KDG +LG+HSLTS + S F I+FP D EKNYL+ A ++ W K W+LNV
Sbjct: 2210 DGQCGLPAVSTKDGCVLGLHSLTSLVNDSNFFIAFPDDFEKNYLERANELNWVKHWKLNV 2269
Query: 2675 DLIDWGTLNLTTNKPDNLFRLSKDLLGLMAEPVEFQAHENRWLYERLGGNLHAVARTTNQ 2496
D I WG L++ +KP N+F+LSKD+ L EPV Q+ E++WL++RL GNL A+ART NQ
Sbjct: 2270 DKICWGALSIEKDKPSNMFKLSKDIQRLDMEPVGLQSREDKWLFDRLNGNLKAMARTRNQ 2329
Query: 2495 LVTKHVVKGKCLLFATYLETNDEAKQFFQPLMGAYQKSRLNKEAYIKDLFKYNSPTTIGV 2316
LVTKHVVKGKCLLF TYL EAK++F P+MGAYQKSRLNKEAYIKDLFKY+SP +G
Sbjct: 2330 LVTKHVVKGKCLLFETYLNVTPEAKEYFTPMMGAYQKSRLNKEAYIKDLFKYSSPIVVGD 2389
Query: 2315 LEPDKFERAEALVMRLFERVGFSECEYVTCPDAIFSALNMKAAVGALYHGKKKDYFDSFS 2136
++ FE A V +LFE GF C YVT IFSALNM AAVGA+Y GKK+DYF F+
Sbjct: 2390 VDCAAFEAACDSVTQLFEGAGFGRCNYVTDEQEIFSALNMNAAVGAMYSGKKRDYFKDFT 2449
Query: 2135 EADKAQILKDSCYRLYAGKMGVWNGSLKAELRPLEKVQANKTRSFTAAPIDTLLGGKVCV 1956
+ DK IL+DSC RLY GKMGVWNGSLKAELR EKV NKTR+FTAAP+DTLLGGK CV
Sbjct: 2450 DLDKESILRDSCLRLYQGKMGVWNGSLKAELRAKEKVDLNKTRTFTAAPVDTLLGGKTCV 2509
Query: 1955 DDFNNQFYSLNLKAPWSVGMTKFYGGWNELMTSLPDGWIYCDADGSQFDSSLTPYLINAV 1776
DDFNN+FYSLN+ PWSVGMTKFY GW+E++ LP+GW+YCDADGSQFDSSL+PYLINAV
Sbjct: 2510 DDFNNRFYSLNIACPWSVGMTKFYKGWDEMLRKLPEGWVYCDADGSQFDSSLSPYLINAV 2569
Query: 1775 LNLRLHFMEEWDIGEKMLENLYTEIVYTPIATPDGTVIKKYKGNNSGQPSTVVDNTIMVI 1596
LNLRLHFMEEWD+G +ML+NLYTEI+YTPIATPDGT+IKK+KGNNSGQPSTVVDNTIMVI
Sbjct: 2570 LNLRLHFMEEWDVGAQMLQNLYTEIIYTPIATPDGTIIKKFKGNNSGQPSTVVDNTIMVI 2629
Query: 1595 LAMYYSGEVYNPTLSLDDYCKFFVNGDDLLIAVHPNHVDFLQDLQNSFQHLGLKYTFTSR 1416
LA++YS + T LD++CK+FVNGDDLL+AV P L N+FQ LGL Y F+SR
Sbjct: 2630 LAIHYSYKYLKITKPLDEFCKYFVNGDDLLLAVAPEFEYLLDHFANTFQQLGLNYDFSSR 2689
Query: 1415 YHTREELWFMSHKAIKVDGVYIPKLEEERIVSILEWDRAVLPEHRLEAICASMIEAWGYP 1236
REELWFMSH+ I DG+YIPKLE ERIVSILEWDRAV P HRLEAICASMIEAWGYP
Sbjct: 2690 TKNREELWFMSHRGIMTDGLYIPKLEPERIVSILEWDRAVEPVHRLEAICASMIEAWGYP 2749
Query: 1235 SLLHQIRKFYYWVLEQAPYSVLSSEGKAPYISEVALKHLYLNQ-IEKSELERYMDGLDW- 1062
LLH+IRKFYYWVLEQAPYS L+ GKAPY+SEVAL+ LY + + ELERY+ L+
Sbjct: 2750 QLLHEIRKFYYWVLEQAPYSELAQLGKAPYLSEVALRALYTGEATSQDELERYLAALNLE 2809
Query: 1061 SSTQGIEEVEFQANDTYDAGKKTDKPEDVEKNHEKENKELTPPPNQEAGPSKGRDKDVDV 882
G E V FQANDT +AG + E ++ P Q++ + RD+DVD
Sbjct: 2810 GECGGAEIVAFQANDTLNAGASSSTQTSRPTRPETAAVDVAP---QQSPEPRVRDRDVDA 2866
Query: 881 GTKGTFQVPRLKSIGSKMTLPRVGGRVIVNLEHLLTYEPEQVDLSNTRATRSQFDSWYNG 702
GT GTFQ+PRLK++ +K+++P++ GR IVNL HL+ Y PEQ D+SNTR+T+ QF++WYN
Sbjct: 2867 GTVGTFQIPRLKALATKISIPKIRGRTIVNLGHLVNYNPEQTDISNTRSTQKQFETWYNA 2926
Query: 701 IKGAYDLNDSSMGVVLNGLMVWCIENGTSPNIHGHWTMMDGDEQVEYPLRPVVEMAQPTL 522
+K Y LND SM + +NGLMVWCIENGTSPNI+G W MMDGD+QVE+PLRP++E A+PTL
Sbjct: 2927 VKDEYGLNDESMALAMNGLMVWCIENGTSPNINGAWLMMDGDQQVEFPLRPIIEHAKPTL 2986
Query: 521 RQIMSHFSALAEAYIEKRNATKPYMPRYGLLRNLRDLSLARYAFDFYEVTARTPVRAREA 342
RQIM+HFS LAEAYIEK+NA KPYMPRYGL RNL D +LAR+AFDFYEVT+RTP RA+EA
Sbjct: 2987 RQIMAHFSHLAEAYIEKQNAEKPYMPRYGLQRNLTDFTLARFAFDFYEVTSRTPARAKEA 3046
Query: 341 HMQMKAAALRNSDNKMFGLDGNSGDKEEDTERHTANDVNRNMHHLMGVRM 192
H QMK AALR +K+FGLDG ++EDTERHTA+DVN+NMH L+G+ M
Sbjct: 3047 HFQMKTAALRGKQSKLFGLDGKVTTQDEDTERHTADDVNKNMHSLLGISM 3096
>gb|AEN25480.2| polyprotein [Lily mottle virus]
Length = 3096
Score = 3223 bits (8357), Expect = 0.0
Identities = 1632/3114 (52%), Positives = 2171/3114 (69%), Gaps = 45/3114 (1%)
Frame = -2
Query: 9398 MASFMIGTFKFTETAS--KSYKAQQMSDGDVLVKE-------------------YENNIA 9282
MASFM+G+ TA+ +S+ + +S VL+ + Y+ +A
Sbjct: 1 MASFMVGSILVDTTATLKESFAQKLLSTPQVLIAQPVRRSFDAARMCARKAMVDYDEKVA 60
Query: 9281 KAFAKLDACAPNGDKYLGATVKRVKNTQYFTLEEKP-QARAVARLDLLERETT--HKWLT 9111
KAF+ L+A + + +G RVK TQ TL +P R ARL ER+ H+
Sbjct: 61 KAFSDLEARSAARVERMGTI--RVKVTQSGTLRAQPLPKREQARLKRDERKKRLEHEEFL 118
Query: 9110 QWEAGAQSVEAIVEPSAPRAQTVSEYRRPLAIDDKPSLAKRTKRVVHTPIRYSVE---NI 8940
+ + +I + P T E P+ S KR ++ + + E ++
Sbjct: 119 KGSPTVVAHISIAGGALPSQNTGEE--TPVKRPQWHSNNKRVRKPIPRSPTLNAEGLASL 176
Query: 8939 IRAIANQNKNCKLDLEIISTKKATRARHTMWRNRLYVKAQTKHELGVRHKRDILVCEWGR 8760
+RA+ +EI+ KK + AR Y++ + H G+R KRD+ + +
Sbjct: 177 MRAMGKIGARNSTKIEIVDKKKVS-ARFVTRDAGSYLQVRVAHHDGLRRKRDLKLSAFAD 235
Query: 8759 QVLRLLVSKTAGNRAHDANMFTQGSSGIIIMSHCLSGNVSASRGNLFIVRGRDGEKLYDS 8580
Q L+ L SKT G+ H A G SG+++ + L G S S +FIVRG KLY++
Sbjct: 236 QCLQHLSSKTHGSTYHHATQLKAGDSGLVLSARRLFGWHSGSCSQIFIVRGNHEGKLYEA 295
Query: 8579 QSVVTSHVASRMRHYSA-GERFWKGYGRGFNSHTP-SVGHQCRSDLDVEECGYVAAMATQ 8406
+ VT +A +M HYS G++FW G+ F P S+ H C S+ V ECG V+A+ Q
Sbjct: 296 RRKVTLMMAHKMIHYSGPGDKFWAGFNSQFLRIKPKSLQHTCTSNFSVFECGQVSALMCQ 355
Query: 8405 VLFPCGHITCQQCADNFVSCSKNDLKEEYGTRIQGLIDEVQNKHPKFAHVVKFLSLFNDY 8226
L+PCG ITCQQCA ++ +K +L E + +++ H +FAHV L++ D
Sbjct: 356 ALYPCGRITCQQCASEYLELTKVELGERLSEGLYRTSAQIREDHQEFAHVAHILTVIADL 415
Query: 8225 LRFSNENIRQFSEAKRIIGDRKEAPFQQLAALNDLLIKVGECTSEEAALGTANLLELVRF 8046
L N N+ F+E ++IG++ ++PF + LN +LIK + +S E + + EL RF
Sbjct: 416 LSLKNNNMEAFTEVHKLIGEQTQSPFTHINRLNSILIKGSDMSSNELHECSDCVRELARF 475
Query: 8045 QKNRTDNISGTSLTHFRNKVSSKIHVNLDLMCDNQLDDDGNFKWRQRGFHAKRMFDNFYE 7866
QKNRTDNI ++ FRNK SSK + NLDLMCDNQLD +GNF+W QRG+HAKR N++E
Sbjct: 476 QKNRTDNIKRLDISVFRNKASSKSYFNLDLMCDNQLDKNGNFEWGQRGYHAKRFLSNYFE 535
Query: 7865 VVNPSKGYDSFIVRTNPNGVRKTAIGNLVISTNMATFREQMRGEPVEPQALSLACTSKLK 7686
VVN Y +R +P G R+ AIG ++STN FR+ M G+ + ++ AC S+
Sbjct: 536 VVNTQNAYREHTLRKHPRGTRELAIGKFIVSTNFEVFRKSMEGKRIPHMPVTEACLSQRG 595
Query: 7685 GSYVYPCCCVTTDTGKPIESEMLAPTKDHLVIGNTGDSKFVTVPKILEDGMYVAKEGYCY 7506
++Y CCC+T + G P+ES PTK+ LV+GNTGD KFV +P ++ MY+A+EGYCY
Sbjct: 596 ERFIYQCCCITHEDGTPLESTFKMPTKNTLVLGNTGDEKFVDMPTDADEKMYIAREGYCY 655
Query: 7505 VNIFVAMLINVSDVQAKDYTRRVRDYAIPTLGKWPTLINLATVCHFLTILYPDIKSAELP 7326
+NIF AMLINV + QAK +T+ VRD +P LG WPT+I++AT CH LT+ +PD SAELP
Sbjct: 656 INIFFAMLINVRESQAKAFTKMVRDRLVPELGTWPTMIDVATACHTLTVFFPDTLSAELP 715
Query: 7325 RILVDHKTCTMHVVDSFGSLSTGYHILKANTVGQLIKFANDELESDMKLYAVGGLHGXXX 7146
RILVDH T TMHV+DS+GS+STGYH LKANTV QL+ FA+D L+S+MK Y VGG
Sbjct: 716 RILVDHNTKTMHVIDSYGSVSTGYHQLKANTVSQLVLFASDTLKSEMKHYQVGG-----Q 770
Query: 7145 XXXXXXXXVIMLARGIYRPKELKSILEHDPTLLVYSLLSPCVLIAMYKNRTFELAVSEWL 6966
V +L + IYRPK ++++LE +P L+ ++ SP VLIA++ + + ELA++ W+
Sbjct: 771 KFTVEYEAVKLLIKAIYRPKLMRTLLEDEPYLICLAMCSPGVLIALFNSGSLELAINYWI 830
Query: 6965 QKDTEVASLCNQLEVVARKISVSKVLAVQQQLIAEQASQMIRSVERSQAHSPSRHFVRLL 6786
+ + A + L V+A K+SV++ L Q L+++ A+ +++ ++R+ A S V
Sbjct: 831 ARHKDTAQIFALLTVLATKVSVARTLTEQLALLSDHATDVLKIMDRTFATQHSVSLVHTF 890
Query: 6785 LARIIENQQMDKELIASGFTQLRLDGDLMREKKFLEALAHSWRDLSWSERCTSIWRSRKH 6606
L ++ E + D L+ SGF L + EK +L L SW LS E+C+ S +
Sbjct: 891 LMQLEEKRHTDVSLVGSGFANLCASTHELMEKNYLAELDASWHALSLWEKCSQTRWSFQP 950
Query: 6605 SQSGTGPSKSATSDDLNVTWRERFN-SLRGGVAETIRDGRSKIGA---TIKRKSNELVGK 6438
+ + + S DLN R+N S++ +R+ + ++ +K K+++ +G+
Sbjct: 951 PKQFSHDLHPSASTDLN----GRYNTSVQALFTRNLRNLKKRVCTKYHNMKIKTHQFIGR 1006
Query: 6437 VTCKLLLTSRLLCPDIFRMVNVLTVMYLLLQIFTGVRGHIQAHQQLKIEKQRLEDDLNFD 6258
C + S PD+ R V++L + ++L I + + + +LK + ++ ++
Sbjct: 1007 QVCNSITGSSRFFPDLARWVHILAIFGVMLNIVRTINLYTSEYIRLKNNELSQIEERRWN 1066
Query: 6257 MVMRLYNIFYERYPTNAPSLYEFEQYLQKTNQSAYQYYMKVCGPDADD-EKVEFQAKGAC 6081
++ +++ E+ P+L EF ++L++ + Y + + D +D E+V+FQAK
Sbjct: 1067 KLLHTFDML-EKTEGQKPTLIEFTKHLKQWDPELYAEFHSILQDDVEDSEEVQFQAKPDG 1125
Query: 6080 EIELERTVAFVALIMMMFDAERSDCVYKVLSKLRGLMAPIGTESVAFQSIDTVKEILGET 5901
E LER +A +AL MM+FDA+RSDCVYKVL+KL+GL+ + E V FQSID +++IL E
Sbjct: 1126 ERNLERIMAIIALTMMVFDADRSDCVYKVLNKLKGLLNTVHQEPVKFQSIDDIQDILEER 1185
Query: 5900 KMAIDIEIDTENHQMNRLKGTTFSDWWQNQISQGRTIPHYRTEGHFMEFTRANAQTVANS 5721
+M ID EI ++H +N+L G TF WW NQ+ +PHYRTEG FMEFTRANA VAN
Sbjct: 1186 EMVIDFEISADDHNINKLAGATFEQWWSNQMECNNVLPHYRTEGFFMEFTRANAAHVANE 1245
Query: 5720 IAHSEHNDLLIMGAVGSGKSTGLPFYLSKKGKVLIIEPTKPLAENVHKQLQGNPFMTQAT 5541
IAH H DLL+ GAVGSGKSTGLPFYLSK+G+VL++EPT+PLA NVHKQL G+PF+ AT
Sbjct: 1246 IAHGPHKDLLVRGAVGSGKSTGLPFYLSKRGRVLMLEPTRPLASNVHKQLAGDPFLVSAT 1305
Query: 5540 LKMRGCNVFGSAPIHVQTSGYALHYFAHNVAQLAEFKFIIFDECHVHDSAAMAFRCLLSE 5361
LKMRG FGSAPI V TSGYA HY+A+N QL +F+F+IFDECHV+DS+AMAFR LL+E
Sbjct: 1306 LKMRGETTFGSAPITVMTSGYAFHYYANNPNQLRDFEFVIFDECHVNDSSAMAFRSLLAE 1365
Query: 5360 YDYGGKILKVSATPPGREAVFSTQHAVQVKMEENLTFQQFVQMQGTGANGDVIQSGDNIL 5181
Y+Y G+I+KVSATPPGRE F+TQH V++ E LTFQQFV +QGTGA GDV GDNIL
Sbjct: 1366 YNYDGRIIKVSATPPGREVEFATQHPVEIIPIERLTFQQFVAVQGTGAVGDVTTKGDNIL 1425
Query: 5180 VYVSSYNEVDSLSKLLLDAKHKVTKVDGRTMKMGQVEIPTSGTRDKKHFIVATNIIENGV 5001
VYV+SY+EVD+LSK L++ HKVTKVDGRTMK+G VEI TSG++ KKHF+VATNIIENGV
Sbjct: 1426 VYVASYSEVDNLSKGLVEKGHKVTKVDGRTMKVGGVEIITSGSQAKKHFVVATNIIENGV 1485
Query: 5000 TLDIDVVVDFGMKVVPELDSDNRLIRYTKVSISYGERIQRLGRVGRNKEGTALRIGATEK 4821
TLDIDVVVDFG+KV E+D D+RL RY K SISYGERIQRLGRVGRNK G A+RIGATEK
Sbjct: 1486 TLDIDVVVDFGLKVSAEVDIDSRLTRYVKKSISYGERIQRLGRVGRNKSGVAVRIGATEK 1545
Query: 4820 GLSAVPNIVATEAAFYSFAYGLPVMTNGVAVGVVANCTVPQARTVLHFELPIFYMLHLVR 4641
GL A+P ATEAAF FAYGLPVMTN V+ ++ NCTV QART++ FE+ FYM H VR
Sbjct: 1546 GLQAIPVTTATEAAFLCFAYGLPVMTNNVSTNILTNCTVLQARTMMLFEINPFYMCHFVR 1605
Query: 4640 FDGSMHPALHACLKGFKLRDSEIILNKMAIPNSGVKQWLTAGEYSRIGARNSVDEFTRIP 4461
FDG+MHP +H L +KLRDSEIILNK+AIPN G+ QW TA EY+ G + ++ + R+P
Sbjct: 1606 FDGTMHPEVHKILTPYKLRDSEIILNKVAIPNKGLMQWPTAKEYAYQGFKMNIPDTVRLP 1665
Query: 4460 FFSKDVPDKIHEQVWEAVVTFKRDAGFGKIQSASACKVAYTLQTDAASITRTVCIIEELI 4281
F + D+P+++HE++W+ + K DAGFG+I +ASACK+AYTL+TD ASI RTV I+++LI
Sbjct: 1666 FHALDIPERLHERMWQIIEAHKGDAGFGRITTASACKIAYTLRTDVASIQRTVHILDKLI 1725
Query: 4280 KNEVKKQEYFQTASGIDCGSG-FSLVSLTNAIRSRHMSNHTAENIAILEAAKGQLEEFRN 4104
+NE+KKQEYF+ + C S FSL ++TNAIR+RH+ +HT EN+++L+AAK Q+ EF+N
Sbjct: 1726 ENELKKQEYFRNITSASCSSSNFSLTTITNAIRARHIKDHTVENVSVLQAAKAQILEFKN 1785
Query: 4103 LGID-PTTRTVTDFGALECVQFQSADGISKQLGLKGKWNKPLITKDILVAGFTMFGGMWM 3927
+ D +T++GALECVQFQ+ + +++ L LKG WNK L+T D+++ G +FG +WM
Sbjct: 1786 VTFDLDHVNRMTEYGALECVQFQTLESMAQHLQLKGHWNKSLLTHDVVICGAVLFGCVWM 1845
Query: 3926 IYNYLK-------RAITTNVEFQASGKRQNQKRRFQIARNNKHAFEVNPDETDVEHYFGE 3768
+ +Y K + +V+FQA KRQ Q+ RF+ AR+NKHA+EV+ D+ D++ YFG
Sbjct: 1846 VGSYFKERCSGVVKRYNESVKFQAKNKRQRQRLRFREARDNKHAYEVHGDDADIQTYFGA 1905
Query: 3767 AYGKKAQGKGRTRGMGAKSRRFYNMYGFDPAEYTFARYVDPLTGYTLDESALTEVKLVQE 3588
AY KK + G TRGMG K+R+F NMY FDP EY+FARYVDPLTGYTLDE ++T++ LVQ+
Sbjct: 1906 AYTKKGKSTGVTRGMGIKTRKFVNMYNFDPTEYSFARYVDPLTGYTLDEQSITDITLVQD 1965
Query: 3587 HFGKIRHELRMREELEPEAIDYHKKIEVYFVKDLAKQVLKIDMDPHNPFEIGRNTESIAG 3408
HFG+IR L E+E EAI + ++EVYFVK+LA ++LKIDM PHNP + E++AG
Sbjct: 1966 HFGRIRRRLMEDGEIEKEAIASNARLEVYFVKNLASKILKIDMTPHNPLRVCGIKETVAG 2025
Query: 3407 YPERKGELRQMGKPTLMSPTLLPAQREYEFDEPVVFESKATFYGMRDYNPISSSVCLLAN 3228
+PER ELRQ G+P +++ LP + Y E V FE+++TF+G+RDYNPI++ VC L +
Sbjct: 2026 FPERDMELRQAGQPVMVTAAELPKENPYPEGEIVEFENRSTFHGLRDYNPIATCVCRLEH 2085
Query: 3227 ESDGYEREIHGIGYGSMIITNQHLFQHNNGTLSVQSHRGKFFIPNTTQLKMYPFPGRDLL 3048
SDG+ ++GIGYGS IITNQHLF NNGT++++SH G + I N+TQL++YP GRD++
Sbjct: 2086 NSDGHTSSLYGIGYGSYIITNQHLFIRNNGTINIESHHGTYHIRNSTQLQLYPVEGRDIV 2145
Query: 3047 IIQMPKDFPPFPQKLKFRSPVSGDRVCMIGSNFQDKYXXXXXXXXXXXSQKDESVFYRHW 2868
IIQ+PKDFPPF ++LKFR PV+ D+VC++G+NFQ+K ++KD+S F+RHW
Sbjct: 2146 IIQLPKDFPPFARRLKFRHPVTTDKVCLVGTNFQEKTTTSTVSEASLITRKDDSHFFRHW 2205
Query: 2867 ISTKTGHCGLPMVSVKDGYILGIHSLTSKDDASGFLISFPQDMEKNYLQNAEQVQWTKKW 2688
ISTK G CGLP VS KDG +LG+HSLTS + S F I+FP D EKNYL+ A ++ W K W
Sbjct: 2206 ISTKDGQCGLPAVSTKDGCVLGLHSLTSLVNDSNFFIAFPDDFEKNYLERANELNWVKHW 2265
Query: 2687 RLNVDLIDWGTLNLTTNKPDNLFRLSKDLLGLMAEPVEFQAHENRWLYERLGGNLHAVAR 2508
+LNVD I WG L+L +KP N+F+LSKD+ L EPV Q+ E++WL++RL GNL A+A+
Sbjct: 2266 KLNVDKICWGALSLERDKPSNMFKLSKDIQRLDTEPVGLQSREDKWLFDRLNGNLKAMAQ 2325
Query: 2507 TTNQLVTKHVVKGKCLLFATYLETNDEAKQFFQPLMGAYQKSRLNKEAYIKDLFKYNSPT 2328
T NQLVTKHVVKGKCLLF TYL N EAK++F P+MGAYQKSRLNKEAYIKDLFKY+SP
Sbjct: 2326 TRNQLVTKHVVKGKCLLFETYLNVNPEAKEYFTPMMGAYQKSRLNKEAYIKDLFKYSSPI 2385
Query: 2327 TIGVLEPDKFERAEALVMRLFERVGFSECEYVTCPDAIFSALNMKAAVGALYHGKKKDYF 2148
+G ++ FE A A V LFE GF +C YVT IFSALN+ AAVGA+Y GKK+DYF
Sbjct: 2386 VVGDVDCAAFEAACASVTHLFEEAGFGKCNYVTDEQEIFSALNLNAAVGAMYSGKKRDYF 2445
Query: 2147 DSFSEADKAQILKDSCYRLYAGKMGVWNGSLKAELRPLEKVQANKTRSFTAAPIDTLLGG 1968
++++DK IL+DSC RLY GKMGVWNGSLKAELR EKV NKTR+FTAAP+DTLLGG
Sbjct: 2446 KDYTDSDKEAILRDSCLRLYQGKMGVWNGSLKAELRAKEKVDLNKTRTFTAAPVDTLLGG 2505
Query: 1967 KVCVDDFNNQFYSLNLKAPWSVGMTKFYGGWNELMTSLPDGWIYCDADGSQFDSSLTPYL 1788
KVCVDDFNN+FYSLN+ PWSVGMTKFY GW+E++ LP+GW+YCDADGSQFDSSL+PYL
Sbjct: 2506 KVCVDDFNNRFYSLNIACPWSVGMTKFYRGWDEMLRKLPEGWVYCDADGSQFDSSLSPYL 2565
Query: 1787 INAVLNLRLHFMEEWDIGEKMLENLYTEIVYTPIATPDGTVIKKYKGNNSGQPSTVVDNT 1608
INAVLNLRLHFMEEWD+G +ML+NLYTEI+YTPIATPDGT+IKK+KGNNSGQPSTVVDNT
Sbjct: 2566 INAVLNLRLHFMEEWDVGTQMLQNLYTEIIYTPIATPDGTIIKKFKGNNSGQPSTVVDNT 2625
Query: 1607 IMVILAMYYSGEVYNPTLSLDDYCKFFVNGDDLLIAVHPNHVDFLQDLQNSFQHLGLKYT 1428
IMVILA++YS + T LD++CK+FVNGDDLL+AV P L L N+FQ LGL Y
Sbjct: 2626 IMVILAIHYSYKNLKITKPLDEFCKYFVNGDDLLLAVAPEFEYVLDHLANTFQQLGLNYD 2685
Query: 1427 FTSRYHTREELWFMSHKAIKVDGVYIPKLEEERIVSILEWDRAVLPEHRLEAICASMIEA 1248
F+SR REELWFMSH+ I DG+YIPKLE ERIVSILEWDRAV P HRLEAICASMIEA
Sbjct: 2686 FSSRTKNREELWFMSHRGIMTDGLYIPKLEPERIVSILEWDRAVEPVHRLEAICASMIEA 2745
Query: 1247 WGYPSLLHQIRKFYYWVLEQAPYSVLSSEGKAPYISEVALKHLYL-NQIEKSELERYMDG 1071
WGYP LLH+IRKFYYWVLEQAPYS L+ GKAPY+SEVAL+ LY + + ELERY+
Sbjct: 2746 WGYPQLLHEIRKFYYWVLEQAPYSELAQLGKAPYLSEVALRALYTGGEASQDELERYLAA 2805
Query: 1070 LDWSSTQ-GIEEVEFQANDTYDAGKKTDKPEDVEKNHEKENKELTPPPNQEAGPSKGRDK 894
LD + Q E V FQAN+T +AG + E ++ P Q++ ++ RD+
Sbjct: 2806 LDLNVEQCNTEIVAFQANETLNAGASSSTQTSRSTRPEAAAIDVAP---QQSSEARVRDR 2862
Query: 893 DVDVGTKGTFQVPRLKSIGSKMTLPRVGGRVIVNLEHLLTYEPEQVDLSNTRATRSQFDS 714
DVD GT GT+Q+PRLK++ +K+ +P+V GR+IVN HL+ Y P+Q D+SNTR+T+ QF++
Sbjct: 2863 DVDAGTVGTYQIPRLKALATKINVPKVKGRIIVNTGHLVNYNPDQADISNTRSTQKQFET 2922
Query: 713 WYNGIKGAYDLNDSSMGVVLNGLMVWCIENGTSPNIHGHWTMMDGDEQVEYPLRPVVEMA 534
WY+ +KG Y LND SM + +NGLMVWCIENGTSPNI+G W MMDGD+QVE+PLRP++E A
Sbjct: 2923 WYDAVKGEYGLNDESMALAMNGLMVWCIENGTSPNINGVWLMMDGDQQVEFPLRPILEHA 2982
Query: 533 QPTLRQIMSHFSALAEAYIEKRNATKPYMPRYGLLRNLRDLSLARYAFDFYEVTARTPVR 354
+PTLRQIM+HFS LAEAYIEK+N KPYMPRYGL RNL D +LAR+AFDFYEVT+RTP R
Sbjct: 2983 KPTLRQIMAHFSNLAEAYIEKQNLEKPYMPRYGLQRNLTDFNLARFAFDFYEVTSRTPAR 3042
Query: 353 AREAHMQMKAAALRNSDNKMFGLDGNSGDKEEDTERHTANDVNRNMHHLMGVRM 192
A+EAH QMK AALR +K+FGLDG ++EDTERHTA+DVN+NMH L+GV M
Sbjct: 3043 AKEAHFQMKTAALRGKQSKLFGLDGKVNTQDEDTERHTADDVNKNMHSLLGVSM 3096
>dbj|BAJ10467.1| polyprotein [Lily mottle virus]
Length = 3095
Score = 3214 bits (8332), Expect = 0.0
Identities = 1612/3079 (52%), Positives = 2142/3079 (69%), Gaps = 22/3079 (0%)
Frame = -2
Query: 9362 ETASKSYKAQQMSDGDVLVKEYENNIAKAFAKLDACAPNGDKYLGATVKRVKNTQYFTLE 9183
+ +S+ A +M + + + E +AKAF+ L+A +G R+K T+ TL
Sbjct: 35 QPVQRSFGAARMCAREAIADD-EEKVAKAFSALEARCAARVSRMGTI--RMKVTRSGTLR 91
Query: 9182 EKP-QARAVARLDLLERETTHKWLTQWEAGAQSVEAI-----VEPSAPRAQTVSEYRRPL 9021
+P R ARL ER+ + ++ I +PS + +S + P
Sbjct: 92 AQPLPKREQARLRKAERKARLDREEFLKGSPTVIDHISIAGGAQPSQDMVEPMSTRKAPW 151
Query: 9020 AIDDKPSLAKRTKRVVHTPI--RYSVENIIRAIANQNKNCKLDLEIISTKKATRARHTMW 8847
+ K K K + +P + +++RAIA + +EI+ +K +AR+
Sbjct: 152 HSESK----KVRKAIPRSPTLNETGLASLMRAIAKIGAKNSIRIEIVDERKV-QARYIKR 206
Query: 8846 RNRLYVKAQTKHELGVRHKRDILVCEWGRQVLRLLVSKTAGNRAHDANMFTQGSSGIIIM 8667
Y++ + H G+R +RD+ + + Q L L S T G + H G SGI+++
Sbjct: 207 DAGSYLQVRVAHHEGLRRRRDLKLSAFADQCLTQLASTTHGTKYHHVTQLKAGDSGIVLL 266
Query: 8666 SHCLSGNVSASRGNLFIVRGRDGEKLYDSQSVVTSHVASRMRHYSA-GERFWKGYGRGFN 8490
+ L G S S +F+VRG KLY+++ VT + +M HYS G++FW G+ F
Sbjct: 267 ARRLFGWHSGSCSQIFVVRGNHEGKLYEARRKVTLTMTHKMIHYSGPGDKFWAGFNSQFL 326
Query: 8489 SHTPS-VGHQCRSDLDVEECGYVAAMATQVLFPCGHITCQQCADNFVSCSKNDLKEEYGT 8313
P + H C S+ +V ECG VAA+ Q L+PCG ITCQQCA ++ +K +L E+
Sbjct: 327 RIKPKEIPHTCTSNFNVFECGQVAALMCQALYPCGRITCQQCASEYLELTKVELGEKLSD 386
Query: 8312 RIQGLIDEVQNKHPKFAHVVKFLSLFNDYLRFSNENIRQFSEAKRIIGDRKEAPFQQLAA 8133
+ +++ H +FAHV L++ D L N N+ F+E ++IG++ ++PF L
Sbjct: 387 GLYRTSSQIRENHREFAHVAHILNVIADLLSLKNNNMEAFTEVHKLIGEQTQSPFTHLNR 446
Query: 8132 LNDLLIKVGECTSEEAALGTANLLELVRFQKNRTDNISGTSLTHFRNKVSSKIHVNLDLM 7953
LN +LIK + +S E + + EL RFQKNRTDNI ++ FRNK SSK + NLDLM
Sbjct: 447 LNSMLIKGSDLSSNELYECSDCIRELARFQKNRTDNIKKLDVSVFRNKASSKSYFNLDLM 506
Query: 7952 CDNQLDDDGNFKWRQRGFHAKRMFDNFYEVVNPSKGYDSFIVRTNPNGVRKTAIGNLVIS 7773
CDNQLD +GNF+W QRG+HAKR N++EVVN Y +R +PNG R+ AIG ++S
Sbjct: 507 CDNQLDKNGNFEWGQRGYHAKRFLSNYFEVVNTQNAYREHTLRKHPNGTRELAIGKFIVS 566
Query: 7772 TNMATFREQMRGEPVEPQALSLACTSKLKGSYVYPCCCVTTDTGKPIESEMLAPTKDHLV 7593
TN FR+ M G+ + ++ AC S+ ++Y CCCVT + G P+ES PTK+ LV
Sbjct: 567 TNFEVFRKSMEGKRIPQMPVTEACLSQRGERFIYQCCCVTNEDGTPLESTFKMPTKNTLV 626
Query: 7592 IGNTGDSKFVTVPKILEDGMYVAKEGYCYVNIFVAMLINVSDVQAKDYTRRVRDYAIPTL 7413
+GNTGD KFV +P ++ MY+A+EGYCY+NIF AMLINV + QAK +T+ VRD +P L
Sbjct: 627 LGNTGDEKFVDMPTDTDEKMYIAREGYCYINIFFAMLINVRESQAKAFTKMVRDRLVPEL 686
Query: 7412 GKWPTLINLATVCHFLTILYPDIKSAELPRILVDHKTCTMHVVDSFGSLSTGYHILKANT 7233
G WPT+I++AT CH LT+ +PD SAELPRILVDH T TMHV+DS+GS+STGYH LKANT
Sbjct: 687 GTWPTMIDVATACHTLTVFFPDTLSAELPRILVDHNTKTMHVIDSYGSVSTGYHQLKANT 746
Query: 7232 VGQLIKFANDELESDMKLYAVGGLHGXXXXXXXXXXXVIMLARGIYRPKELKSILEHDPT 7053
V QL+ FA+D L+S+MK Y VGG V +L + IYRPK +++++E +P
Sbjct: 747 VSQLVLFASDTLKSEMKHYQVGG-----KKFTVEYEAVKLLIKAIYRPKLMRTLMEDEPY 801
Query: 7052 LLVYSLLSPCVLIAMYKNRTFELAVSEWLQKDTEVASLCNQLEVVARKISVSKVLAVQQQ 6873
L+ ++ SP VLIA++ + + E A++ W+ + + A + L V+A K+SV++ L Q
Sbjct: 802 LICLAMCSPGVLIALFNSGSLETAINYWIARHKDTAQIFALLTVLATKVSVARTLTEQLA 861
Query: 6872 LIAEQASQMIRSVERSQAHSPSRHFVRLLLARIIENQQMDKELIASGFTQLRLDGDLMRE 6693
++++ A+ M++ ++R+ A S V L ++ E + D L+ SGF L + E
Sbjct: 862 ILSDHATDMLKIMDRTFATQHSVSLVHTFLMQLEEKRHTDVSLVGSGFANLSATTHELME 921
Query: 6692 KKFLEALAHSWRDLSWSERCTSIWRSRKHSQSGTGPSKSATSDDLNVTWRERFNSLRGGV 6513
K +L L SWRDLS E+C+ + S + Q + + S DLN + +L
Sbjct: 922 KNYLAELDASWRDLSLLEKCSQMRWSFRSPQQFSNELHPSASTDLNGRYNTSVRALSTRY 981
Query: 6512 AETIRDGRSKIGATIKRKSNELVGKVTCKLLLTSRLLCPDIFRMVNVLTVMYLLLQIFTG 6333
+R +K ++++ +G+ C ++ S PD+ + V++L + +LL I
Sbjct: 982 MNNLRKSVCTKYHNMKIRTHQFIGRQVCNSIMGSSRFFPDLAQCVHILAIFSILLNIIRT 1041
Query: 6332 VRGHIQAHQQLKIEKQRLEDDLNFDMVMRLYNIFYERYPTNAPSLYEFEQYLQKTNQSAY 6153
+ + + +LK + ++ ++ ++ +++ E+ P+L EF ++L++ + Y
Sbjct: 1042 INIYTSEYIRLKNCELSQIEEKRWNKLLHTFDMM-EKIDGQKPTLIEFTKHLKQWDPELY 1100
Query: 6152 QYYMKVCGPDADD-EKVEFQAKGACEIELERTVAFVALIMMMFDAERSDCVYKVLSKLRG 5976
+ + + +D E+V+FQAK E LER +A +AL MM+FDA+RSDCVYKVL+KL+G
Sbjct: 1101 SEFHSILQDEEEDTEEVQFQAKPDGERNLERIMAIIALTMMVFDADRSDCVYKVLNKLKG 1160
Query: 5975 LMAPIGTESVAFQSIDTVKEILGETKMAIDIEIDTENHQMNRLKGTTFSDWWQNQISQGR 5796
L+ + E V FQSID +++ L E +M ID EI ++H +N+L G TF WW NQ+
Sbjct: 1161 LLNTVHQEPVKFQSIDDIQDYLEEREMVIDFEISADDHNINKLAGATFEQWWSNQMECNN 1220
Query: 5795 TIPHYRTEGHFMEFTRANAQTVANSIAHSEHNDLLIMGAVGSGKSTGLPFYLSKKGKVLI 5616
+PHYRTEG FMEFTRANA VAN IAH H DLLI GAVGSGKSTGLPFYLSK+G+VL+
Sbjct: 1221 VLPHYRTEGFFMEFTRANAAHVANEIAHGPHKDLLIRGAVGSGKSTGLPFYLSKRGRVLM 1280
Query: 5615 IEPTKPLAENVHKQLQGNPFMTQATLKMRGCNVFGSAPIHVQTSGYALHYFAHNVAQLAE 5436
+EPT+PLA NVHKQL G+PF+ ATLKMRG FGSAPI V TSGYA HY+A+N QL +
Sbjct: 1281 LEPTRPLASNVHKQLAGDPFLVSATLKMRGETTFGSAPITVMTSGYAFHYYANNPNQLRD 1340
Query: 5435 FKFIIFDECHVHDSAAMAFRCLLSEYDYGGKILKVSATPPGREAVFSTQHAVQVKMEENL 5256
F+FIIFDECHV+DS+AMAFR LL+EY Y G+I+KVSATPPGRE F+TQH V++ E L
Sbjct: 1341 FEFIIFDECHVNDSSAMAFRSLLAEYTYDGRIIKVSATPPGREVEFTTQHPVEIIPIERL 1400
Query: 5255 TFQQFVQMQGTGANGDVIQSGDNILVYVSSYNEVDSLSKLLLDAKHKVTKVDGRTMKMGQ 5076
TFQQFV +QGTGA GDV GDNILVYV+SY+EVD+LSK L++ HKVTKVDGRTMK+G
Sbjct: 1401 TFQQFVAVQGTGAVGDVTTKGDNILVYVASYSEVDNLSKGLVEKGHKVTKVDGRTMKVGG 1460
Query: 5075 VEIPTSGTRDKKHFIVATNIIENGVTLDIDVVVDFGMKVVPELDSDNRLIRYTKVSISYG 4896
VEI TSG++ KKHF+VATNIIENGVTLDIDVVVDFG+KVV E+D D+RL RY K SISYG
Sbjct: 1461 VEIITSGSQAKKHFVVATNIIENGVTLDIDVVVDFGLKVVAEVDIDSRLTRYVKKSISYG 1520
Query: 4895 ERIQRLGRVGRNKEGTALRIGATEKGLSAVPNIVATEAAFYSFAYGLPVMTNGVAVGVVA 4716
ERIQRLGRVGRNK G A+R+G TEKGL A+P ATEAAF FAYGLPVMTN V+ ++
Sbjct: 1521 ERIQRLGRVGRNKPGVAVRVGTTEKGLQAIPVTTATEAAFLCFAYGLPVMTNNVSTNILT 1580
Query: 4715 NCTVPQARTVLHFELPIFYMLHLVRFDGSMHPALHACLKGFKLRDSEIILNKMAIPNSGV 4536
NCTV QART++ FE+ FYM H VRFDG+MHP +H L +KLRDSEIILNK+AIPN G+
Sbjct: 1581 NCTVLQARTMMLFEINPFYMCHFVRFDGTMHPEVHRILTPYKLRDSEIILNKVAIPNKGL 1640
Query: 4535 KQWLTAGEYSRIGARNSVDEFTRIPFFSKDVPDKIHEQVWEAVVTFKRDAGFGKIQSASA 4356
QW TA EY+ G + ++ + R+PF S D+P+++HE++W+ V T K DAGFG+I +ASA
Sbjct: 1641 MQWPTAKEYAYQGFKMNIPDTVRLPFHSLDIPERLHERMWQIVETHKGDAGFGRITTASA 1700
Query: 4355 CKVAYTLQTDAASITRTVCIIEELIKNEVKKQEYFQTASGIDCGSG-FSLVSLTNAIRSR 4179
CK+AYTL+TDAASI RT+ I+++LI+NE+KKQEYF+ + C S FSL ++TNAIR+R
Sbjct: 1701 CKIAYTLKTDAASIQRTIHILDKLIENELKKQEYFRNITSASCSSSSFSLTTITNAIRAR 1760
Query: 4178 HMSNHTAENIAILEAAKGQLEEFRNLGID-PTTRTVTDFGALECVQFQSADGISKQLGLK 4002
H+ +HT EN+++L+AAK Q+ EF+N+ D +T++GALECVQFQ+ + +++ L LK
Sbjct: 1761 HIKDHTVENVSVLQAAKSQILEFKNVTFDLDHVNRMTEYGALECVQFQTLESMTQHLQLK 1820
Query: 4001 GKWNKPLITKDILVAGFTMFGGMWMIYNYLK-------RAITTNVEFQASGKRQNQKRRF 3843
G WNK L+T D+++ G + G + M+ +Y K + NV+FQA KRQ Q+ RF
Sbjct: 1821 GHWNKSLLTHDVVICGAVLIGCVLMVGSYFKERCSGVVKRYNENVKFQAKNKRQRQRLRF 1880
Query: 3842 QIARNNKHAFEVNPDETDVEHYFGEAYGKKAQGKGRTRGMGAKSRRFYNMYGFDPAEYTF 3663
+ AR+NKHA+EV+ D+ D++ YFG AY KK + KG TRGMG K+R+F NMY FDP EY+F
Sbjct: 1881 REARDNKHAYEVHGDDADIQTYFGSAYTKKGKTKGVTRGMGIKTRKFVNMYNFDPTEYSF 1940
Query: 3662 ARYVDPLTGYTLDESALTEVKLVQEHFGKIRHELRMREELEPEAIDYHKKIEVYFVKDLA 3483
ARYVDPLTGYTLDE LT++ LVQ+HFG+IR +L ELE E++ + ++EVYFVK+LA
Sbjct: 1941 ARYVDPLTGYTLDEQTLTDIALVQDHFGRIRRKLMEDGELEKESLAQNARLEVYFVKNLA 2000
Query: 3482 KQVLKIDMDPHNPFEIGRNTESIAGYPERKGELRQMGKPTLMSPTLLPAQREYEFDEPVV 3303
Q+LKIDM PHNP + E++AG+PER ELRQ GK +++ LP + Y E V
Sbjct: 2001 SQILKIDMTPHNPLRVCDRIETVAGFPERDMELRQSGKSVMVTAAELPKENPYPEGEIVE 2060
Query: 3302 FESKATFYGMRDYNPISSSVCLLANESDGYEREIHGIGYGSMIITNQHLFQHNNGTLSVQ 3123
FE+K+TF+G+RDYNPI++ VC L + SDG+ ++GIGYGS IITNQHLF NNGT++++
Sbjct: 2061 FENKSTFHGLRDYNPIATCVCRLEHNSDGHTSSLYGIGYGSYIITNQHLFIRNNGTINIE 2120
Query: 3122 SHRGKFFIPNTTQLKMYPFPGRDLLIIQMPKDFPPFPQKLKFRSPVSGDRVCMIGSNFQD 2943
SH G + I N+TQL++YP GRD++IIQ+PKDFPPF ++LKFR P + D+VC++G+NFQ+
Sbjct: 2121 SHHGTYHIRNSTQLQLYPIEGRDIVIIQLPKDFPPFARRLKFRHPTTTDKVCLVGTNFQE 2180
Query: 2942 KYXXXXXXXXXXXSQKDESVFYRHWISTKTGHCGLPMVSVKDGYILGIHSLTSKDDASGF 2763
K ++KD+S F+RHWISTK G CGLP VS KDG +LG+HSLTS + S F
Sbjct: 2181 KTTTSTVSEASLITRKDDSHFFRHWISTKDGQCGLPAVSTKDGCVLGLHSLTSLVNDSNF 2240
Query: 2762 LISFPQDMEKNYLQNAEQVQWTKKWRLNVDLIDWGTLNLTTNKPDNLFRLSKDLLGLMAE 2583
I+FP D EKNYL+ A ++ W K W+LNVD I WG L+L +KP N+F+LSKD+ L E
Sbjct: 2241 FIAFPDDFEKNYLERANELNWVKHWKLNVDKICWGALSLEKDKPSNMFKLSKDIQRLDME 2300
Query: 2582 PVEFQAHENRWLYERLGGNLHAVARTTNQLVTKHVVKGKCLLFATYLETNDEAKQFFQPL 2403
PV Q+ E++WL++RL GNL A+ART NQLVTKHVVKGKCLLF TYL +AK++F P+
Sbjct: 2301 PVGLQSREDKWLFDRLNGNLKAMARTRNQLVTKHVVKGKCLLFETYLNVTPKAKEYFTPM 2360
Query: 2402 MGAYQKSRLNKEAYIKDLFKYNSPTTIGVLEPDKFERAEALVMRLFERVGFSECEYVTCP 2223
MGAYQKSRLNKEAYIKDLFKY+SP +G ++ FE A V +LFE GF C YVT
Sbjct: 2361 MGAYQKSRLNKEAYIKDLFKYSSPIVVGDVDCAAFEAACDSVTQLFEGAGFGRCNYVTDE 2420
Query: 2222 DAIFSALNMKAAVGALYHGKKKDYFDSFSEADKAQILKDSCYRLYAGKMGVWNGSLKAEL 2043
IFSALNM AAVGA+Y GKK+DYF F++ DK IL+DSC RLY GKMGVWNGSLKAEL
Sbjct: 2421 QEIFSALNMNAAVGAMYSGKKRDYFKDFTDLDKESILRDSCLRLYQGKMGVWNGSLKAEL 2480
Query: 2042 RPLEKVQANKTRSFTAAPIDTLLGGKVCVDDFNNQFYSLNLKAPWSVGMTKFYGGWNELM 1863
R EKV NKTR+FTAAP+DTLLGGK CVDDFNN+FYSLN+ PWSVGMTKFY GW+E++
Sbjct: 2481 RAKEKVDLNKTRTFTAAPVDTLLGGKTCVDDFNNRFYSLNIACPWSVGMTKFYKGWDEML 2540
Query: 1862 TSLPDGWIYCDADGSQFDSSLTPYLINAVLNLRLHFMEEWDIGEKMLENLYTEIVYTPIA 1683
LP+GW+YCDADGSQFDSSL+PYLINAVLNLRLHFMEEWD+G +ML+NLYTEI+YTPIA
Sbjct: 2541 RKLPEGWVYCDADGSQFDSSLSPYLINAVLNLRLHFMEEWDVGAQMLQNLYTEIIYTPIA 2600
Query: 1682 TPDGTVIKKYKGNNSGQPSTVVDNTIMVILAMYYSGEVYNPTLSLDDYCKFFVNGDDLLI 1503
TPDGT+IKK+KGNNSGQPSTVVDNTIMVILA++YS + T LD++CK+FVNGDDLL+
Sbjct: 2601 TPDGTIIKKFKGNNSGQPSTVVDNTIMVILAIHYSYKYLKITKPLDEFCKYFVNGDDLLL 2660
Query: 1502 AVHPNHVDFLQDLQNSFQHLGLKYTFTSRYHTREELWFMSHKAIKVDGVYIPKLEEERIV 1323
AV P L N+FQ LGL Y F+SR REELWFMSH+ I DG+YIPKLE ERIV
Sbjct: 2661 AVAPEFEYLLDHFANTFQQLGLNYDFSSRTKNREELWFMSHRGIMTDGLYIPKLEPERIV 2720
Query: 1322 SILEWDRAVLPEHRLEAICASMIEAWGYPSLLHQIRKFYYWVLEQAPYSVLSSEGKAPYI 1143
SILEWDRAV P HRLEAICASMIEAWGYP LLH+IRKFYYWVLEQAPYS L+ GKAPY+
Sbjct: 2721 SILEWDRAVEPVHRLEAICASMIEAWGYPQLLHEIRKFYYWVLEQAPYSELAQLGKAPYL 2780
Query: 1142 SEVALKHLYLNQ-IEKSELERYMDGLDW-SSTQGIEEVEFQANDTYDAGKKTDKPEDVEK 969
SE AL+ LY + + ELERY+ L+ G E V FQAN+T + G + +
Sbjct: 2781 SEAALRALYTGEATSQDELERYLAALNLEGECGGAEIVAFQANETLNTGASS----STQA 2836
Query: 968 NHEKENKELTPPPNQEAGPSKGRDKDVDVGTKGTFQVPRLKSIGSKMTLPRVGGRVIVNL 789
+ + Q++ ++ RD+DVD GT GT+Q+PRLK++ +K+ +P+V GR+IVN
Sbjct: 2837 SRSTRPEAAIDVAPQQSSEARVRDRDVDAGTVGTYQIPRLKALATKINVPKVKGRMIVNT 2896
Query: 788 EHLLTYEPEQVDLSNTRATRSQFDSWYNGIKGAYDLNDSSMGVVLNGLMVWCIENGTSPN 609
HL+ Y P+Q D+SNTR+T+ QF++WYN +K Y LND SM + +NGLMVWCIENGTSPN
Sbjct: 2897 GHLVNYNPDQTDISNTRSTQKQFEAWYNAVKDEYGLNDESMALAMNGLMVWCIENGTSPN 2956
Query: 608 IHGHWTMMDGDEQVEYPLRPVVEMAQPTLRQIMSHFSALAEAYIEKRNATKPYMPRYGLL 429
++G W MMDGD+QVE+PLRP++E A+PTLRQIM+HFS LAEAYIEK+N KPYMPRYGL
Sbjct: 2957 VNGVWLMMDGDQQVEFPLRPILEHAKPTLRQIMAHFSNLAEAYIEKQNLEKPYMPRYGLQ 3016
Query: 428 RNLRDLSLARYAFDFYEVTARTPVRAREAHMQMKAAALRNSDNKMFGLDGNSGDKEEDTE 249
RNL D +LAR+AFDFYEVT+RTP RA+EAH QMK AALR +K+FGLDG ++EDTE
Sbjct: 3017 RNLTDFNLARFAFDFYEVTSRTPARAKEAHFQMKTAALRGKQSKLFGLDGKVNTQDEDTE 3076
Query: 248 RHTANDVNRNMHHLMGVRM 192
RHTA+DVN+NMH L+G+ M
Sbjct: 3077 RHTADDVNKNMHSLLGISM 3095
>emb|CAJ15516.1| polyprotein [Lily mottle virus]
Length = 3096
Score = 3213 bits (8331), Expect = 0.0
Identities = 1615/3079 (52%), Positives = 2140/3079 (69%), Gaps = 22/3079 (0%)
Frame = -2
Query: 9362 ETASKSYKAQQMSDGDVLVKEYENNIAKAFAKLDACAPNGDKYLGATVKRVKNTQYFTLE 9183
+ +S+ A +M + + + E +AKAF+ L+A +G RVK T+ TL
Sbjct: 35 QPVQRSFGAARMCAREAIADD-EEKVAKAFSALEARCAARVSRMGTI--RVKVTRSGTLR 91
Query: 9182 EKP-QARAVARLDLLERETTHKWLTQWEAGAQSVEAI-----VEPSAPRAQTVSEYRRPL 9021
+P R ARL ER+ + ++ I +PS + +S + P
Sbjct: 92 AQPLPKREQARLRKAERKARLDREEFLKGSPTVIDHISIAGGAQPSQDMVEPMSTRKAPW 151
Query: 9020 AIDDKPSLAKRTKRVVHTPI--RYSVENIIRAIANQNKNCKLDLEIISTKKATRARHTMW 8847
+ K K K + +P + +++RAIA + +EI+ +K +AR+
Sbjct: 152 HSESK----KARKAIPRSPTLNETGLASLMRAIAKIGAKNSIRIEIVDERKV-QARYIKR 206
Query: 8846 RNRLYVKAQTKHELGVRHKRDILVCEWGRQVLRLLVSKTAGNRAHDANMFTQGSSGIIIM 8667
Y++ + H G+R +RD+ + + Q L L S T G + H G SGI+++
Sbjct: 207 DAGSYLQVRVAHHEGLRRRRDLKLSAFADQCLTQLASTTHGTKYHHVTQLKAGDSGIVLL 266
Query: 8666 SHCLSGNVSASRGNLFIVRGRDGEKLYDSQSVVTSHVASRMRHYSA-GERFWKGYGRGFN 8490
+ L G S S +F+VRG KLY+++ VT + +M HYS G++FW G+ F
Sbjct: 267 ARRLFGWHSGSCSQIFVVRGNHEGKLYEARRKVTLTMTHKMIHYSRPGDKFWAGFNSQFL 326
Query: 8489 SHTPS-VGHQCRSDLDVEECGYVAAMATQVLFPCGHITCQQCADNFVSCSKNDLKEEYGT 8313
P + H C S+ +V ECG VAA+ Q L+PCG ITCQQCA ++ +K +L E+
Sbjct: 327 RIKPKEIPHTCTSNFNVFECGQVAALMCQALYPCGRITCQQCASEYLELTKVELGEKLSD 386
Query: 8312 RIQGLIDEVQNKHPKFAHVVKFLSLFNDYLRFSNENIRQFSEAKRIIGDRKEAPFQQLAA 8133
+ +++ H +FAHV L++ D L N N+ F+E ++IG+R ++PF L
Sbjct: 387 GLYRTSSQIRENHREFAHVAHILNVIADLLSLKNNNMEAFTEVHKLIGERTQSPFTHLNR 446
Query: 8132 LNDLLIKVGECTSEEAALGTANLLELVRFQKNRTDNISGTSLTHFRNKVSSKIHVNLDLM 7953
LN +LIK + +S E + + EL RFQKNRTDNI ++ FRNK SSK + NLDLM
Sbjct: 447 LNSILIKGSDLSSNELYECSDCIRELARFQKNRTDNIKKLDVSVFRNKASSKSYFNLDLM 506
Query: 7952 CDNQLDDDGNFKWRQRGFHAKRMFDNFYEVVNPSKGYDSFIVRTNPNGVRKTAIGNLVIS 7773
CDNQLD +GNF+W QRG+HAKR N++EVVN Y +R +PNG R+ AIG ++S
Sbjct: 507 CDNQLDKNGNFEWGQRGYHAKRFLSNYFEVVNTQNAYREHTLRKHPNGTRELAIGKFIVS 566
Query: 7772 TNMATFREQMRGEPVEPQALSLACTSKLKGSYVYPCCCVTTDTGKPIESEMLAPTKDHLV 7593
TN FR+ M G+ + ++ AC S+ ++Y CCCVT + G P+ES PTK+ LV
Sbjct: 567 TNFEVFRKSMEGKRIPQMPVTEACLSQRGERFIYQCCCVTNEDGTPLESTFKMPTKNTLV 626
Query: 7592 IGNTGDSKFVTVPKILEDGMYVAKEGYCYVNIFVAMLINVSDVQAKDYTRRVRDYAIPTL 7413
+GNTGD KFV +P ++ MY+A+EGYCY+NIF AMLINV + QAK +T+ VRD +P L
Sbjct: 627 LGNTGDEKFVDMPTDTDEKMYIAREGYCYINIFFAMLINVRESQAKAFTKMVRDRLVPEL 686
Query: 7412 GKWPTLINLATVCHFLTILYPDIKSAELPRILVDHKTCTMHVVDSFGSLSTGYHILKANT 7233
G WPT+I++AT CH LT+ +PD SAELPRILVDH T TMHV+DS+GS+STGYH LKANT
Sbjct: 687 GTWPTMIDVATACHTLTVFFPDTLSAELPRILVDHNTKTMHVIDSYGSVSTGYHQLKANT 746
Query: 7232 VGQLIKFANDELESDMKLYAVGGLHGXXXXXXXXXXXVIMLARGIYRPKELKSILEHDPT 7053
V QL+ FA+D L+S+MK Y VGG V +L + IYRPK +++++E +P
Sbjct: 747 VSQLVLFASDTLKSEMKHYQVGG-----RKFTVEYEAVKLLIKAIYRPKLMRTLMEDEPY 801
Query: 7052 LLVYSLLSPCVLIAMYKNRTFELAVSEWLQKDTEVASLCNQLEVVARKISVSKVLAVQQQ 6873
L+ ++ SP VLIA++ + + E A++ W+ + + A + L V+A K+SV++ L Q
Sbjct: 802 LICLAMCSPGVLIALFNSGSLETAINYWIARHKDTAQIFALLTVLATKVSVARTLTEQLA 861
Query: 6872 LIAEQASQMIRSVERSQAHSPSRHFVRLLLARIIENQQMDKELIASGFTQLRLDGDLMRE 6693
++++ A+ +++ ++R+ A S V L ++ E + D L+ SGF L + E
Sbjct: 862 ILSDHATDVLKIMDRTFATQHSVSLVHTFLMQLEEKRHTDVSLVGSGFANLSATTHELME 921
Query: 6692 KKFLEALAHSWRDLSWSERCTSIWRSRKHSQSGTGPSKSATSDDLNVTWRERFNSLRGGV 6513
K +L L SW+DLS E+C+ + S + Q + + S DLN + +L
Sbjct: 922 KNYLAELDASWQDLSLLEKCSQMRWSFRSPQQFSNELHPSASTDLNGRYNTSVRALSTRY 981
Query: 6512 AETIRDGRSKIGATIKRKSNELVGKVTCKLLLTSRLLCPDIFRMVNVLTVMYLLLQIFTG 6333
+R +K ++++ +G+ C ++ S PD+ + V++L + +LL I
Sbjct: 982 MNNLRKSVCTKYHNMKIRTHQFIGRQVCNSIMGSSRFFPDLAQCVHILAIFSILLNIIRT 1041
Query: 6332 VRGHIQAHQQLKIEKQRLEDDLNFDMVMRLYNIFYERYPTNAPSLYEFEQYLQKTNQSAY 6153
+ + + +LK + ++ ++ ++ +++ E+ P+L EF ++L++ + Y
Sbjct: 1042 INIYTSEYIRLKNCELSQIEEKRWNKLLHTFDMM-EKIDGQKPTLIEFTKHLKQWDPELY 1100
Query: 6152 QYYMKVCGPDADD-EKVEFQAKGACEIELERTVAFVALIMMMFDAERSDCVYKVLSKLRG 5976
+ + + +D E+V+FQAK E LER +A +AL MM+FDA+RSDCVYKVL+KL+G
Sbjct: 1101 SEFHSILQDEEEDTEEVQFQAKPDGERNLERIMAIIALTMMVFDADRSDCVYKVLNKLKG 1160
Query: 5975 LMAPIGTESVAFQSIDTVKEILGETKMAIDIEIDTENHQMNRLKGTTFSDWWQNQISQGR 5796
L+ + E V FQSID +++ L E +M ID EI ++H +N+L G TF WW NQ+
Sbjct: 1161 LLNTVHQEPVKFQSIDDIQDYLEEREMVIDFEISADDHNINKLAGATFEQWWSNQMECNN 1220
Query: 5795 TIPHYRTEGHFMEFTRANAQTVANSIAHSEHNDLLIMGAVGSGKSTGLPFYLSKKGKVLI 5616
+PHYRTEG FMEFTRANA VAN IAH H DLLI GAVGSGKSTGLPFYLSK+G+VL+
Sbjct: 1221 VLPHYRTEGFFMEFTRANAAHVANEIAHGPHKDLLIRGAVGSGKSTGLPFYLSKRGRVLM 1280
Query: 5615 IEPTKPLAENVHKQLQGNPFMTQATLKMRGCNVFGSAPIHVQTSGYALHYFAHNVAQLAE 5436
+EPT+PLA NVHKQL G+PF+ ATLKMRG FGSAPI V TSGYA HY+A+N QL +
Sbjct: 1281 LEPTRPLASNVHKQLAGDPFLVSATLKMRGETTFGSAPITVMTSGYAFHYYANNPNQLRD 1340
Query: 5435 FKFIIFDECHVHDSAAMAFRCLLSEYDYGGKILKVSATPPGREAVFSTQHAVQVKMEENL 5256
F+FIIFDECHV+DS+AMAFR LL+EY Y G+I+KVSATPPGRE F+TQH V++ E L
Sbjct: 1341 FEFIIFDECHVNDSSAMAFRSLLAEYTYDGRIIKVSATPPGREVEFATQHPVEIIPIERL 1400
Query: 5255 TFQQFVQMQGTGANGDVIQSGDNILVYVSSYNEVDSLSKLLLDAKHKVTKVDGRTMKMGQ 5076
TFQQFV +QGTGA GDV GDNILVYV+SY+EVD+LSK L++ HKVTKVDGRTMK+G
Sbjct: 1401 TFQQFVAVQGTGAVGDVTTKGDNILVYVASYSEVDNLSKGLVEKGHKVTKVDGRTMKVGG 1460
Query: 5075 VEIPTSGTRDKKHFIVATNIIENGVTLDIDVVVDFGMKVVPELDSDNRLIRYTKVSISYG 4896
VEI TSG++ KKHF+VATNIIENGVTLDIDVVVDFG+KVV E+D D+RL RY K SISYG
Sbjct: 1461 VEIITSGSQAKKHFVVATNIIENGVTLDIDVVVDFGLKVVAEVDIDSRLTRYVKKSISYG 1520
Query: 4895 ERIQRLGRVGRNKEGTALRIGATEKGLSAVPNIVATEAAFYSFAYGLPVMTNGVAVGVVA 4716
ERIQRLGRVGRNK G A+R+G TEKGL A+P ATEAAF FAYGLPVMTN V+ ++
Sbjct: 1521 ERIQRLGRVGRNKPGAAVRVGTTEKGLQAIPVTTATEAAFLCFAYGLPVMTNNVSTNILT 1580
Query: 4715 NCTVPQARTVLHFELPIFYMLHLVRFDGSMHPALHACLKGFKLRDSEIILNKMAIPNSGV 4536
NCTV QART++ FE+ FYM H VRFDG+MHP +H L +KLRDSEIILNK+AIPN G+
Sbjct: 1581 NCTVLQARTMMLFEINPFYMCHFVRFDGTMHPEVHRILTPYKLRDSEIILNKVAIPNKGL 1640
Query: 4535 KQWLTAGEYSRIGARNSVDEFTRIPFFSKDVPDKIHEQVWEAVVTFKRDAGFGKIQSASA 4356
QW TA EY+ G + ++ + R+PF S D+P+++HE++W+ V T K DAGFG+I +ASA
Sbjct: 1641 MQWPTAKEYAYQGFKMNIPDTVRLPFHSLDIPERLHERMWQIVETHKGDAGFGRITTASA 1700
Query: 4355 CKVAYTLQTDAASITRTVCIIEELIKNEVKKQEYFQTASGIDCGSG-FSLVSLTNAIRSR 4179
CK+AYTL+TDAASI RT+ I+++LI+NE+KKQEYF+ + C S FSL ++TNAIR+R
Sbjct: 1701 CKIAYTLKTDAASIQRTIHILDKLIENELKKQEYFRNITSASCSSSSFSLTTITNAIRAR 1760
Query: 4178 HMSNHTAENIAILEAAKGQLEEFRNLGID-PTTRTVTDFGALECVQFQSADGISKQLGLK 4002
H+ +HT EN+++L+AAK Q+ EF+N+ D +T++GALECVQFQ+ + ++ L LK
Sbjct: 1761 HIKDHTVENVSVLQAAKAQILEFKNVTFDLDHVNRMTEYGALECVQFQTLESMTHHLQLK 1820
Query: 4001 GKWNKPLITKDILVAGFTMFGGMWMIYNYLK-------RAITTNVEFQASGKRQNQKRRF 3843
G WNK L+T D+++ G + G + M+ +Y K + NV+FQA KRQ Q+ RF
Sbjct: 1821 GHWNKSLLTHDVVICGAVLIGCVLMVGSYFKERCSGVVKRYNENVKFQAKNKRQRQRLRF 1880
Query: 3842 QIARNNKHAFEVNPDETDVEHYFGEAYGKKAQGKGRTRGMGAKSRRFYNMYGFDPAEYTF 3663
+ AR+NKHA+EV+ D+ D++ YFG AY KK + KG TRGMG K+R+F NMY FDP EY+F
Sbjct: 1881 REARDNKHAYEVHGDDADIQTYFGSAYTKKGKTKGVTRGMGIKTRKFVNMYNFDPTEYSF 1940
Query: 3662 ARYVDPLTGYTLDESALTEVKLVQEHFGKIRHELRMREELEPEAIDYHKKIEVYFVKDLA 3483
ARYVDPLTGYTLDE LT++ LVQ+HFG+IR +L ELE E++ + ++EVYFVK+LA
Sbjct: 1941 ARYVDPLTGYTLDEQTLTDIALVQDHFGRIRRKLMEDGELEKESLAQNARLEVYFVKNLA 2000
Query: 3482 KQVLKIDMDPHNPFEIGRNTESIAGYPERKGELRQMGKPTLMSPTLLPAQREYEFDEPVV 3303
Q+LKIDM PHNP + E++AG+PER LRQ GK +++ LP + Y E V
Sbjct: 2001 SQILKIDMTPHNPLRVCDRIETVAGFPERDMGLRQSGKSVMVTAAELPKENPYPGGEIVE 2060
Query: 3302 FESKATFYGMRDYNPISSSVCLLANESDGYEREIHGIGYGSMIITNQHLFQHNNGTLSVQ 3123
FE+K+TF+G+RDYNPI++ VC L + SDG+ ++GIGYGS IITNQHLF NNGT++++
Sbjct: 2061 FENKSTFHGLRDYNPIATCVCRLEHNSDGHTSSLYGIGYGSYIITNQHLFIRNNGTINIE 2120
Query: 3122 SHRGKFFIPNTTQLKMYPFPGRDLLIIQMPKDFPPFPQKLKFRSPVSGDRVCMIGSNFQD 2943
SH G + I N+TQL++YP GRD++IIQ+PKDFPPF ++LKFR P + D+VC++G+NFQ+
Sbjct: 2121 SHHGTYHIRNSTQLQLYPIEGRDIVIIQLPKDFPPFARRLKFRHPTTTDKVCLVGTNFQE 2180
Query: 2942 KYXXXXXXXXXXXSQKDESVFYRHWISTKTGHCGLPMVSVKDGYILGIHSLTSKDDASGF 2763
K ++KD+S F+RHWISTK G CGLP VS KDG +LG+HSLTS + S F
Sbjct: 2181 KTTTSTVSEASLITRKDDSHFFRHWISTKDGQCGLPAVSTKDGCVLGLHSLTSLVNDSNF 2240
Query: 2762 LISFPQDMEKNYLQNAEQVQWTKKWRLNVDLIDWGTLNLTTNKPDNLFRLSKDLLGLMAE 2583
I+FP D EKNYL+ A ++ W K W+LNVD I WG L+L +KP N+F+LSKD+ L E
Sbjct: 2241 FIAFPDDFEKNYLERANELNWVKHWKLNVDKICWGALSLEKDKPSNMFKLSKDIQRLDME 2300
Query: 2582 PVEFQAHENRWLYERLGGNLHAVARTTNQLVTKHVVKGKCLLFATYLETNDEAKQFFQPL 2403
PV Q+ E++WL++RL GNL A+ART NQLVTKHVVKGKCLLF TYL +AK++F P+
Sbjct: 2301 PVGLQSREDKWLFDRLNGNLKAMARTRNQLVTKHVVKGKCLLFETYLNVTPKAKEYFTPM 2360
Query: 2402 MGAYQKSRLNKEAYIKDLFKYNSPTTIGVLEPDKFERAEALVMRLFERVGFSECEYVTCP 2223
MGAYQKSRLNKEAYIKDLFKY+SP +G ++ FE A V +LFE GF C YVT
Sbjct: 2361 MGAYQKSRLNKEAYIKDLFKYSSPIVVGDVDCAAFEAACDSVTQLFEGAGFGRCNYVTDE 2420
Query: 2222 DAIFSALNMKAAVGALYHGKKKDYFDSFSEADKAQILKDSCYRLYAGKMGVWNGSLKAEL 2043
IFSALNM AAVGA+Y GKK+DYF F++ DK IL+DSC RLY GKMGVWNGSLKAEL
Sbjct: 2421 QEIFSALNMNAAVGAMYSGKKRDYFKDFTDLDKESILRDSCLRLYQGKMGVWNGSLKAEL 2480
Query: 2042 RPLEKVQANKTRSFTAAPIDTLLGGKVCVDDFNNQFYSLNLKAPWSVGMTKFYGGWNELM 1863
R EKV NKTR+FTAAP+DTLLG K CVDDFNN+FYSLN+ PWSVGMTKFY GW+E++
Sbjct: 2481 RAKEKVDLNKTRTFTAAPVDTLLGEKTCVDDFNNRFYSLNIACPWSVGMTKFYKGWDEML 2540
Query: 1862 TSLPDGWIYCDADGSQFDSSLTPYLINAVLNLRLHFMEEWDIGEKMLENLYTEIVYTPIA 1683
LP+GW+YCDADGSQFDSSL+PYLINAVLNLRLHFMEEWD+G +ML+NLYTEI+YTPIA
Sbjct: 2541 RKLPEGWVYCDADGSQFDSSLSPYLINAVLNLRLHFMEEWDVGAQMLQNLYTEIIYTPIA 2600
Query: 1682 TPDGTVIKKYKGNNSGQPSTVVDNTIMVILAMYYSGEVYNPTLSLDDYCKFFVNGDDLLI 1503
TPDGT+IKK+KGNNSGQPSTVVDNTIMVILA++YS + T LD++CK+FVNGDD+L+
Sbjct: 2601 TPDGTIIKKFKGNNSGQPSTVVDNTIMVILAIHYSYKYLKITKPLDEFCKYFVNGDDILL 2660
Query: 1502 AVHPNHVDFLQDLQNSFQHLGLKYTFTSRYHTREELWFMSHKAIKVDGVYIPKLEEERIV 1323
AV P L N+FQ LGL Y F+SR REELWFMSH+ I DG+YIPKLE ERIV
Sbjct: 2661 AVAPEFEYLLDHFANTFQQLGLNYDFSSRTKNREELWFMSHRGIMTDGLYIPKLEPERIV 2720
Query: 1322 SILEWDRAVLPEHRLEAICASMIEAWGYPSLLHQIRKFYYWVLEQAPYSVLSSEGKAPYI 1143
SILEWDRAV P HR EAICASMIEAWGYP LLH+IRKFYYWVLEQAPYS L+ GKAPY+
Sbjct: 2721 SILEWDRAVEPVHRPEAICASMIEAWGYPQLLHEIRKFYYWVLEQAPYSELAQLGKAPYL 2780
Query: 1142 SEVALKHLYLNQ-IEKSELERYMDGLDW-SSTQGIEEVEFQANDTYDAGKKTDKPEDVEK 969
SE AL+ L+ + + ELERY+ LD G E V FQAN+T +AG +
Sbjct: 2781 SEAALRALFTGEATSQDELERYLAALDLEGECGGAEIVAFQANETLNAGASSSTQTSRPA 2840
Query: 968 NHEKENKELTPPPNQEAGPSKGRDKDVDVGTKGTFQVPRLKSIGSKMTLPRVGGRVIVNL 789
E ++ P Q++ + RD+DVD GT GTFQ+PRLK++ +K+++P++ GR IVNL
Sbjct: 2841 RPETAAVDVAP---QQSPEPRVRDRDVDAGTVGTFQIPRLKALATKISIPKIRGRTIVNL 2897
Query: 788 EHLLTYEPEQVDLSNTRATRSQFDSWYNGIKGAYDLNDSSMGVVLNGLMVWCIENGTSPN 609
HL Y PEQ D+SNTR+T+ QF++WYN +K Y LND SM + +NGLMVWCIENGTSPN
Sbjct: 2898 GHLANYNPEQTDISNTRSTQKQFETWYNAVKDEYGLNDESMALTMNGLMVWCIENGTSPN 2957
Query: 608 IHGHWTMMDGDEQVEYPLRPVVEMAQPTLRQIMSHFSALAEAYIEKRNATKPYMPRYGLL 429
I+G W MMDGD+QVE+PLRP++E A+PTLRQIM+HFS LAEAYIEK+NA KPYMPRYGL
Sbjct: 2958 INGAWLMMDGDQQVEFPLRPIIEHAKPTLRQIMAHFSHLAEAYIEKQNAEKPYMPRYGLQ 3017
Query: 428 RNLRDLSLARYAFDFYEVTARTPVRAREAHMQMKAAALRNSDNKMFGLDGNSGDKEEDTE 249
RNL D +LAR+AFDFYEVT+RTP RA+EAH QMK AALR +K+FGLDG ++EDTE
Sbjct: 3018 RNLTDFTLARFAFDFYEVTSRTPARAKEAHFQMKTAALRGKQSKLFGLDGKVTTQDEDTE 3077
Query: 248 RHTANDVNRNMHHLMGVRM 192
RHTA+DVN+NMH L+G+ M
Sbjct: 3078 RHTADDVNKNMHPLLGISM 3096
>ref|NP_945133.1| polyprotein [Lily mottle virus] gi|38707331|emb|CAD92110.1|
polyprotein [Lily mottle virus]
Length = 3095
Score = 3204 bits (8306), Expect = 0.0
Identities = 1616/3078 (52%), Positives = 2148/3078 (69%), Gaps = 21/3078 (0%)
Frame = -2
Query: 9362 ETASKSYKAQQMSDGDVLVKEYENNIAKAFAKLDACAPNGDKYLGATVKRVKNTQYFTLE 9183
+ +S+ A +M + + E +AKAF+ L+A +G RVK T+ T
Sbjct: 35 QPVQRSFGAARMCARKAIADD-EEKVAKAFSALEARCAARVSRMGTI--RVKVTRSGTSR 91
Query: 9182 EKP-QARAVARLDLLERETTHKWLTQWEAGAQSVEAIVEPS-APRAQTVSEYRRPLAIDD 9009
+P R ARL ER+ L + E S I S A AQ + P++
Sbjct: 92 AQPLPKREQARLRKAERKAR---LDREEFLKGSPTVIDHISIAGGAQPSQDMVEPMSTRK 148
Query: 9008 KP--SLAKRTKRVV-HTPI--RYSVENIIRAIANQNKNCKLDLEIISTKKATRARHTMWR 8844
P S++K+ ++V+ H+P + +++RAIA + +EI+ ++ +AR+
Sbjct: 149 APWHSVSKKARKVIPHSPTLNETGLASLMRAIAKIGAKNSMKVEIVDERRV-QARYIKRD 207
Query: 8843 NRLYVKAQTKHELGVRHKRDILVCEWGRQVLRLLVSKTAGNRAHDANMFTQGSSGIIIMS 8664
Y++ + H G+R +RD+ + + Q L L S T G + H G SGI++++
Sbjct: 208 AGSYLQVRVAHHEGLRRRRDLKLSAFADQCLTQLASTTHGTKYHHVTQIKAGDSGIVLLA 267
Query: 8663 HCLSGNVSASRGNLFIVRGRDGEKLYDSQSVVTSHVASRMRHYSA-GERFWKGYGRGFNS 8487
LSG S S +F+VRG KLY+++ VT + RM HYS G++FW G+ F
Sbjct: 268 RRLSGWHSGSCSQIFVVRGNHEGKLYEARRKVTLTMTHRMIHYSGPGDKFWAGFNSQFLR 327
Query: 8486 HTPS-VGHQCRSDLDVEECGYVAAMATQVLFPCGHITCQQCADNFVSCSKNDLKEEYGTR 8310
P + H C S+ +V ECG VAA+ Q L+PCG ITCQQCA ++ +K +L E+
Sbjct: 328 IKPKEIPHTCTSNFNVFECGQVAALMCQALYPCGRITCQQCASEYLELTKVELGEKLSDG 387
Query: 8309 IQGLIDEVQNKHPKFAHVVKFLSLFNDYLRFSNENIRQFSEAKRIIGDRKEAPFQQLAAL 8130
+ +++ H +FAHV L++ D L N N+ F+E ++IG++ ++PF L L
Sbjct: 388 LYRTSSQIRENHQEFAHVAHILNVIADLLSLKNNNMEAFTEVHKLIGEQTQSPFTHLNRL 447
Query: 8129 NDLLIKVGECTSEEAALGTANLLELVRFQKNRTDNISGTSLTHFRNKVSSKIHVNLDLMC 7950
N +LIK + +S E + + EL RFQKNRTDNI ++ FRNK SSK + NLDLMC
Sbjct: 448 NSILIKGSDMSSNELYECSDCIRELARFQKNRTDNIKKLDVSVFRNKASSKSYFNLDLMC 507
Query: 7949 DNQLDDDGNFKWRQRGFHAKRMFDNFYEVVNPSKGYDSFIVRTNPNGVRKTAIGNLVIST 7770
DNQLD +GNF+W QRG+HAKR N++EVVN Y +R +PNG R+ AIG ++ST
Sbjct: 508 DNQLDKNGNFEWGQRGYHAKRFLSNYFEVVNTQNAYREHTLRKHPNGTRELAIGKFIVST 567
Query: 7769 NMATFREQMRGEPVEPQALSLACTSKLKGSYVYPCCCVTTDTGKPIESEMLAPTKDHLVI 7590
N FR+ M G+ + ++ AC S+ ++ CCCVT + G P+ES PTK+ LV+
Sbjct: 568 NFEVFRKSMEGKRIPQMPVTEACLSQRGERFICQCCCVTNEDGTPLESTFKMPTKNTLVL 627
Query: 7589 GNTGDSKFVTVPKILEDGMYVAKEGYCYVNIFVAMLINVSDVQAKDYTRRVRDYAIPTLG 7410
GNTGD KFV +P ++ MY+A+EGYCY+NIF AMLINV + QAK +T+ VRD +P LG
Sbjct: 628 GNTGDEKFVDMPTDTDEKMYIAREGYCYINIFFAMLINVRESQAKAFTKMVRDRLVPELG 687
Query: 7409 KWPTLINLATVCHFLTILYPDIKSAELPRILVDHKTCTMHVVDSFGSLSTGYHILKANTV 7230
WPT+I++AT CH LT+ +PD SAELPRILVDH T TMHV+DS+GS+STGYH LKANTV
Sbjct: 688 TWPTMIDVATACHTLTVFFPDTLSAELPRILVDHNTKTMHVIDSYGSVSTGYHQLKANTV 747
Query: 7229 GQLIKFANDELESDMKLYAVGGLHGXXXXXXXXXXXVIMLARGIYRPKELKSILEHDPTL 7050
QL+ FA+D L+S+MK Y VGG V +L + IYRPK + +++E +P L
Sbjct: 748 SQLVLFASDTLKSEMKHYQVGG-----KKFTVEYEAVKLLIKAIYRPKLMWTLMEDEPYL 802
Query: 7049 LVYSLLSPCVLIAMYKNRTFELAVSEWLQKDTEVASLCNQLEVVARKISVSKVLAVQQQL 6870
+ ++ SP VLIA++ + + E A++ W+ + + A + L V+A K+SV+ L Q L
Sbjct: 803 ICLAMCSPGVLIALFNSGSLETAINYWVARHKDTAQIFALLTVLATKVSVAHTLTEQLAL 862
Query: 6869 IAEQASQMIRSVERSQAHSPSRHFVRLLLARIIENQQMDKELIASGFTQLRLDGDLMREK 6690
+++ A+ ++R ++R+ A S V L ++ E + D L+ SGF+ L + EK
Sbjct: 863 LSDHATDVLRIMDRTFATQHSVSLVHTFLMQLEEKRHTDVSLVGSGFSNLCATTHELMEK 922
Query: 6689 KFLEALAHSWRDLSWSERCTSIWRSRKHSQSGTGPSKSATSDDLNVTWRERFNSLRGGVA 6510
+L L SWRDLS E+C+ + S + Q + + S DLN + +L
Sbjct: 923 NYLAELDASWRDLSLLEKCSQMRWSFQSPQQFSNELHPSASTDLNGRYNTSVRALSTRYM 982
Query: 6509 ETIRDGRSKIGATIKRKSNELVGKVTCKLLLTSRLLCPDIFRMVNVLTVMYLLLQIFTGV 6330
+R +K ++++ +G+ C ++ PD+ R V++L + ++L I +
Sbjct: 983 NNLRKSVCTKYHNMKIRTHQFIGRQVCNSIMGPSGFFPDLARCVHILAIFSIMLNIIRTI 1042
Query: 6329 RGHIQAHQQLKIEKQRLEDDLNFDMVMRLYNIFYERYPTNAPSLYEFEQYLQKTNQSAYQ 6150
+ + +LK + ++ ++ ++ +++ E+ P+L EF ++L++ + Y
Sbjct: 1043 NIYTSEYIRLKNCELSQIEEKRWNKLLHTFDMM-EKIDGQKPTLIEFTKHLKQWDPELYS 1101
Query: 6149 YYMKVCGPDADD-EKVEFQAKGACEIELERTVAFVALIMMMFDAERSDCVYKVLSKLRGL 5973
+ + + +D E+V+FQAK E LER +A +AL MM+FDA+RSDCVYKVL+KL+GL
Sbjct: 1102 EFHSILQDEEEDTEEVQFQAKPDGERNLERIMAIIALTMMVFDADRSDCVYKVLNKLKGL 1161
Query: 5972 MAPIGTESVAFQSIDTVKEILGETKMAIDIEIDTENHQMNRLKGTTFSDWWQNQISQGRT 5793
+ + E V FQSID ++++L E +M ID EI ++H +N+L G TF WW NQ+
Sbjct: 1162 LNTVHQEPVKFQSIDDIQDLLEEREMVIDFEISADDHNINKLAGATFEQWWSNQMECNNV 1221
Query: 5792 IPHYRTEGHFMEFTRANAQTVANSIAHSEHNDLLIMGAVGSGKSTGLPFYLSKKGKVLII 5613
+PHYRTEG FMEFTRANA VAN IAH H DLLI GAVGSGKSTGLPFYLSK+G+VL++
Sbjct: 1222 LPHYRTEGFFMEFTRANAAHVANEIAHGPHKDLLIRGAVGSGKSTGLPFYLSKRGRVLML 1281
Query: 5612 EPTKPLAENVHKQLQGNPFMTQATLKMRGCNVFGSAPIHVQTSGYALHYFAHNVAQLAEF 5433
EPT+PLA NVHKQL G+PF+ ATLKMRG FGSAPI V TSGYA HY+A+N QL +F
Sbjct: 1282 EPTRPLASNVHKQLAGDPFLVSATLKMRGETTFGSAPITVMTSGYAFHYYANNPNQLRDF 1341
Query: 5432 KFIIFDECHVHDSAAMAFRCLLSEYDYGGKILKVSATPPGREAVFSTQHAVQVKMEENLT 5253
+FIIFDECHV+DS+AMAFR LL+EY Y G+I+KVSATPPGRE F+TQH V++ E LT
Sbjct: 1342 EFIIFDECHVNDSSAMAFRSLLAEYTYDGRIIKVSATPPGREVEFTTQHPVEIIPIERLT 1401
Query: 5252 FQQFVQMQGTGANGDVIQSGDNILVYVSSYNEVDSLSKLLLDAKHKVTKVDGRTMKMGQV 5073
FQQFV +QGTGA GDV GDNILVYV+SY+EVD+LSK L++ HKVTKVDGRTMK+G V
Sbjct: 1402 FQQFVAVQGTGAVGDVTTKGDNILVYVASYSEVDNLSKGLVEKGHKVTKVDGRTMKVGGV 1461
Query: 5072 EIPTSGTRDKKHFIVATNIIENGVTLDIDVVVDFGMKVVPELDSDNRLIRYTKVSISYGE 4893
EI TSG++ KKHF+VATNIIENGVTLDIDVVVDFG+KVV E+D D+RL RY K SISYGE
Sbjct: 1462 EIITSGSQAKKHFVVATNIIENGVTLDIDVVVDFGLKVVAEVDIDSRLTRYIKKSISYGE 1521
Query: 4892 RIQRLGRVGRNKEGTALRIGATEKGLSAVPNIVATEAAFYSFAYGLPVMTNGVAVGVVAN 4713
IQRLGRVGRNK G A+R+G TEKGL A+P ATEAAF FAYGLPVMTN V+ ++ N
Sbjct: 1522 LIQRLGRVGRNKPGVAVRVGTTEKGLQAIPVTTATEAAFLCFAYGLPVMTNNVSTNILTN 1581
Query: 4712 CTVPQARTVLHFELPIFYMLHLVRFDGSMHPALHACLKGFKLRDSEIILNKMAIPNSGVK 4533
CTV QART++ FE+ FYM H VRFDG+MHP +H L +KLRDSEIILNK+AIPN +
Sbjct: 1582 CTVLQARTMMLFEINPFYMCHFVRFDGTMHPEVHRILTPYKLRDSEIILNKVAIPNKCLM 1641
Query: 4532 QWLTAGEYSRIGARNSVDEFTRIPFFSKDVPDKIHEQVWEAVVTFKRDAGFGKIQSASAC 4353
QW TA EY+ G R ++ + R+PF S D+P+++HE++W+ V T K DAGFG+I +ASAC
Sbjct: 1642 QWPTAKEYAYQGFRMNIPDTVRLPFHSMDIPERLHERMWQIVETHKGDAGFGRITTASAC 1701
Query: 4352 KVAYTLQTDAASITRTVCIIEELIKNEVKKQEYFQTASGIDCGSG-FSLVSLTNAIRSRH 4176
K+AYTL+TD ASI RT+ I+++LI+NE+KKQEYF+ + C S FSL ++TNAIR+RH
Sbjct: 1702 KIAYTLRTDVASIQRTIHILDKLIENELKKQEYFRNITSASCSSSSFSLTTITNAIRARH 1761
Query: 4175 MSNHTAENIAILEAAKGQLEEFRNLGID-PTTRTVTDFGALECVQFQSADGISKQLGLKG 3999
+ +HT EN+++L+AAK Q+ EF+N+ D +T++GALECVQFQ+ + +++ L LKG
Sbjct: 1762 IKDHTVENVSVLQAAKAQILEFKNVTFDLDHVNRMTEYGALECVQFQTLESMAQHLQLKG 1821
Query: 3998 KWNKPLITKDILVAGFTMFGGMWMIYNYLK-------RAITTNVEFQASGKRQNQKRRFQ 3840
WNK L+T D+++ G + G + M+ +Y K + NV+FQA KRQ Q+ RF+
Sbjct: 1822 HWNKSLLTHDVVICGAVLLGCVLMVGSYFKERCSGVVKRYNENVKFQAKNKRQRQRLRFR 1881
Query: 3839 IARNNKHAFEVNPDETDVEHYFGEAYGKKAQGKGRTRGMGAKSRRFYNMYGFDPAEYTFA 3660
AR+NKHA+EV+ D+ D++ YFG AY KK + KG TRGMG K+R+F NMY FDP EY+FA
Sbjct: 1882 EARDNKHAYEVHGDDADIQTYFGSAYTKKGKTKGVTRGMGIKTRKFVNMYNFDPTEYSFA 1941
Query: 3659 RYVDPLTGYTLDESALTEVKLVQEHFGKIRHELRMREELEPEAIDYHKKIEVYFVKDLAK 3480
RYVDPLTGYTLDE +LT++ LVQ+HFG+IR +L ELE E++ + ++EVYFVK+LA
Sbjct: 1942 RYVDPLTGYTLDEQSLTDIALVQDHFGRIRRKLMEDGELEKESLAKNARLEVYFVKNLAS 2001
Query: 3479 QVLKIDMDPHNPFEIGRNTESIAGYPERKGELRQMGKPTLMSPTLLPAQREYEFDEPVVF 3300
Q+LKIDM PHNP + + E++AG+PER ELRQ GK +++ LP + Y E V F
Sbjct: 2002 QILKIDMTPHNPLRVCDHIETVAGFPERDMELRQSGKSVMVTAAELPKENPYPEGEIVEF 2061
Query: 3299 ESKATFYGMRDYNPISSSVCLLANESDGYEREIHGIGYGSMIITNQHLFQHNNGTLSVQS 3120
E+K+TF+G+RDYNPI++ VC L + SDG+ ++GIGYGS IITNQHLF NNGT++++S
Sbjct: 2062 ENKSTFHGLRDYNPIATCVCRLEHNSDGHTSSLYGIGYGSYIITNQHLFIRNNGTINIES 2121
Query: 3119 HRGKFFIPNTTQLKMYPFPGRDLLIIQMPKDFPPFPQKLKFRSPVSGDRVCMIGSNFQDK 2940
H G + I N+TQL++YP GRD++IIQ+PKDFPPF ++LKFR P + D+VC++G+NFQ+K
Sbjct: 2122 HHGTYHIRNSTQLQLYPIEGRDIVIIQLPKDFPPFARRLKFRHPTTTDKVCLVGTNFQEK 2181
Query: 2939 YXXXXXXXXXXXSQKDESVFYRHWISTKTGHCGLPMVSVKDGYILGIHSLTSKDDASGFL 2760
++KD+S F+RHWIS K G CGLP VS KDG +LG+HSLTS + S F
Sbjct: 2182 TTTSTVSEASLITRKDDSHFFRHWISAKDGQCGLPAVSTKDGCVLGLHSLTSLVNDSNFF 2241
Query: 2759 ISFPQDMEKNYLQNAEQVQWTKKWRLNVDLIDWGTLNLTTNKPDNLFRLSKDLLGLMAEP 2580
I+FP D EKNYL+ A ++ W K W+LNVD I WG L+L +KP N+F+LSKD+ L EP
Sbjct: 2242 IAFPDDFEKNYLERANELNWVKHWKLNVDKICWGALSLEKDKPSNMFKLSKDIQRLDMEP 2301
Query: 2579 VEFQAHENRWLYERLGGNLHAVARTTNQLVTKHVVKGKCLLFATYLETNDEAKQFFQPLM 2400
V Q+ E++WL++RL GNL A+ART NQLVTKHVVKGKCLLF TYL +AK++F P+M
Sbjct: 2302 VGLQSREDKWLFDRLNGNLKAMARTRNQLVTKHVVKGKCLLFETYLNVTPKAKEYFTPMM 2361
Query: 2399 GAYQKSRLNKEAYIKDLFKYNSPTTIGVLEPDKFERAEALVMRLFERVGFSECEYVTCPD 2220
GAYQKSRLNKEAYIKDLFKY+SP +G ++ FE A V +LFE GF C YVT
Sbjct: 2362 GAYQKSRLNKEAYIKDLFKYSSPIVVGDVDCAAFEAACDSVTQLFEGAGFGRCNYVTDEQ 2421
Query: 2219 AIFSALNMKAAVGALYHGKKKDYFDSFSEADKAQILKDSCYRLYAGKMGVWNGSLKAELR 2040
IFSALNM AAVGA+Y GKK+DYF F++ DK IL+DSC RLY GKMGVWNGSLKAELR
Sbjct: 2422 EIFSALNMNAAVGAMYSGKKRDYFKDFTDLDKESILRDSCLRLYQGKMGVWNGSLKAELR 2481
Query: 2039 PLEKVQANKTRSFTAAPIDTLLGGKVCVDDFNNQFYSLNLKAPWSVGMTKFYGGWNELMT 1860
EKV NKTR+FTAAP+DTLLGGK CVDDFNN+FYSLN+ PWSVGMTKFY GW+E++
Sbjct: 2482 AKEKVDLNKTRTFTAAPVDTLLGGKTCVDDFNNRFYSLNIACPWSVGMTKFYKGWDEMLR 2541
Query: 1859 SLPDGWIYCDADGSQFDSSLTPYLINAVLNLRLHFMEEWDIGEKMLENLYTEIVYTPIAT 1680
LP+GW+YCDADGSQFDSSL+PYLINAVLNLRLHFMEEWD+G +ML+NLYTEI+YTPIAT
Sbjct: 2542 KLPEGWVYCDADGSQFDSSLSPYLINAVLNLRLHFMEEWDVGAQMLQNLYTEIIYTPIAT 2601
Query: 1679 PDGTVIKKYKGNNSGQPSTVVDNTIMVILAMYYSGEVYNPTLSLDDYCKFFVNGDDLLIA 1500
PDGT+IKK+KGNNSGQPSTVVDNTIMVILA++YS + T LD++CK+FVNGDDLL+A
Sbjct: 2602 PDGTIIKKFKGNNSGQPSTVVDNTIMVILAIHYSYKYLKITKPLDEFCKYFVNGDDLLLA 2661
Query: 1499 VHPNHVDFLQDLQNSFQHLGLKYTFTSRYHTREELWFMSHKAIKVDGVYIPKLEEERIVS 1320
V P L N+FQ LGL Y F+SR REELWFMSH+ I DG+YIPKLE ERIVS
Sbjct: 2662 VAPEFEYLLDHFANTFQQLGLNYDFSSRTKNREELWFMSHRGIMTDGLYIPKLEPERIVS 2721
Query: 1319 ILEWDRAVLPEHRLEAICASMIEAWGYPSLLHQIRKFYYWVLEQAPYSVLSSEGKAPYIS 1140
ILEWDRAV P HRLEAICASMIEAWGYP LLH+IRKFYYWVLEQAPYS L+ GKAPY+S
Sbjct: 2722 ILEWDRAVEPVHRLEAICASMIEAWGYPQLLHEIRKFYYWVLEQAPYSELAQLGKAPYLS 2781
Query: 1139 EVALKHLYLNQ-IEKSELERYMDGLDW-SSTQGIEEVEFQANDTYDAGKKTDKPEDVEKN 966
E AL+ LY + + ELERY+ ++ G E V FQAN+T +AG + +
Sbjct: 2782 EAALRALYTGEATSQDELERYLAAVNLEGGCGGAEIVAFQANETLNAG-ASSSTQASRST 2840
Query: 965 HEKENKELTPPPNQEAGPSKGRDKDVDVGTKGTFQVPRLKSIGSKMTLPRVGGRVIVNLE 786
+ + ++ P Q++ ++ RD+DVD GT GT+Q+PRLK++ +K+ +P+V GR+IVN
Sbjct: 2841 RPEASIDVAP---QQSSEARVRDRDVDAGTVGTYQIPRLKALATKINVPKVKGRMIVNTG 2897
Query: 785 HLLTYEPEQVDLSNTRATRSQFDSWYNGIKGAYDLNDSSMGVVLNGLMVWCIENGTSPNI 606
HL+ Y P+Q D+SNTR+T+ QF++WYN +K Y LND SM + +NGLMVWCIENGTSPN+
Sbjct: 2898 HLVNYNPDQTDISNTRSTQKQFEAWYNAVKDEYGLNDESMALAMNGLMVWCIENGTSPNV 2957
Query: 605 HGHWTMMDGDEQVEYPLRPVVEMAQPTLRQIMSHFSALAEAYIEKRNATKPYMPRYGLLR 426
+G W MMDGD+QVE+PLRP++E A+PTLRQIM+HFS LAEAYIEK+N KPYMPRYGL R
Sbjct: 2958 NGVWLMMDGDQQVEFPLRPILEHAKPTLRQIMAHFSNLAEAYIEKQNLEKPYMPRYGLQR 3017
Query: 425 NLRDLSLARYAFDFYEVTARTPVRAREAHMQMKAAALRNSDNKMFGLDGNSGDKEEDTER 246
NL D +LAR+AFDFYEVT+RTP RA+EAH QMK AALR +K+FGLDG ++EDTER
Sbjct: 3018 NLTDFNLARFAFDFYEVTSRTPARAKEAHFQMKTAALRGKQSKLFGLDGKVNTQDEDTER 3077
Query: 245 HTANDVNRNMHHLMGVRM 192
HTA+DVN+NMH L+G+ M
Sbjct: 3078 HTADDVNKNMHSLLGISM 3095
>gb|ADC95428.1| polyprotein [Lily mottle virus]
Length = 3095
Score = 3194 bits (8281), Expect = 0.0
Identities = 1609/3086 (52%), Positives = 2139/3086 (69%), Gaps = 29/3086 (0%)
Frame = -2
Query: 9362 ETASKSYKAQQMSDGDVLVKEYENNIAKAFAKLDACAPNGDKYLGATVKRVKNTQYFTLE 9183
+ +S+ A +M + + + E +AKAF+ L+A +G R+K T+ TL
Sbjct: 35 QPVQRSFGAARMCAREAIADD-EEKVAKAFSALEARCAARVSRMGTI--RMKVTRSGTLR 91
Query: 9182 EKP-QARAVARLDLLERETTHKWLTQWEAGAQSVEAI-----VEPSAPRAQTVSEYRRPL 9021
+P R ARL ER+ + ++ I +PS + +S + P
Sbjct: 92 AQPLPKREQARLRKAERKARLDREEFLKGSPTVIDHISIAGGAQPSQDMVEPMSTRKAPW 151
Query: 9020 AIDDKPSLAKRTKRVVHTPI--RYSVENIIRAIANQNKNCKLDLEIISTKKATRARHTMW 8847
+ K K K + +P + +++RAIA + +EI+ +K +AR+
Sbjct: 152 HSESK----KARKAIPRSPTLNETGLASLMRAIAKIGAKNSIKIEIVDERKV-QARYIKR 206
Query: 8846 RNRLYVKAQTKHELGVRHKRDILVCEWGRQVLRLLVSKTAGNRAHDANMFTQGSSGIIIM 8667
Y++ + H G+R +RD+ + + Q L L S T G + H G SGI+++
Sbjct: 207 DAGSYLQVRVAHHEGLRRRRDLKLSAFADQCLTQLASTTHGTKYHHVTQLKAGDSGIVLL 266
Query: 8666 SHCLSGNVSASRGNLFIVRGRDGEKLYDSQSVVTSHVASRMRHYSA-GERFWKGYGRGFN 8490
+ L G S S +F+VRG KLY+++ VT + +M HYS G++FW G+ F
Sbjct: 267 ARRLFGWHSGSCSQIFVVRGNHEGKLYEARRKVTLTMTHKMIHYSGPGDKFWAGFNSQFL 326
Query: 8489 SHTPS-VGHQCRSDLDVEECGYVAAMATQVLFPCGHITCQQCADNFVSCSKNDLKEEYGT 8313
P + H C S+ +V ECG VAA+ Q L+PCG ITCQQCA ++ +K +L E+
Sbjct: 327 RIKPKEIPHTCTSNFNVFECGQVAALMCQALYPCGRITCQQCASEYLELTKVELGEKLSD 386
Query: 8312 RIQGLIDEVQNKHPKFAHVVKFLSLFNDYLRFSNENIRQFSEAKRIIGDRKEAPFQQLAA 8133
+ +++ H +FAHV L++ D L N N+ F+E ++IG++ ++PF L
Sbjct: 387 GLYRTSSQIRENHREFAHVAHILNVIADLLSLKNNNMEAFTEVHKLIGEQTQSPFTHLNR 446
Query: 8132 LNDLLIKVGECTSEEAALGTANLLELVRFQKNRTDNISGTSLTHFRNKVSSKIHVNLDLM 7953
LN +LIK + +S E + + EL RFQKNRTDNI ++ FRNK SSK + NLDLM
Sbjct: 447 LNSILIKGSDMSSNELYECSDCIRELARFQKNRTDNIKKLDVSVFRNKASSKSYFNLDLM 506
Query: 7952 CDNQLDDDGNFKWRQRGFHAKRMFDNFYEVVNPSKGYDSFIVRTNPNGVRKTAIGNLVIS 7773
CDNQLD +GNF+W QRG+HAKR N++EVVN Y +R +PNG R+ AIG ++S
Sbjct: 507 CDNQLDKNGNFEWGQRGYHAKRFLSNYFEVVNTQNAYREHTLRKHPNGTRELAIGKFIVS 566
Query: 7772 TNMATFREQMRGEPVEPQALSLACTSKLKGSYVYPCCCVTTDTGKPIESEMLAPTKDHLV 7593
TN FR+ M G+ + ++ AC S+ ++Y CCCVT + G P+ES PTK+ LV
Sbjct: 567 TNFEVFRKSMEGKRIPQMPVTEACLSQRGERFIYQCCCVTNEDGTPLESTFKMPTKNTLV 626
Query: 7592 IGNTGDSKFVTVPKILEDGMYVAKEGYCYVNIFVAMLINVSDVQAKDYTRRVRDYAIPTL 7413
+GNTGD KFV +P ++ MY+A+EGYCY+NIF AMLINV + QAK +T+ VRD +P L
Sbjct: 627 LGNTGDEKFVDMPTDTDEKMYIAREGYCYINIFFAMLINVRESQAKAFTKMVRDRLVPEL 686
Query: 7412 GKWPTLINLATVCHFLTILYPDIKSAELPRILVDHKTCTMHVVDSFGSLSTGYHILKANT 7233
G WPT+I++AT CH LT+ +PD SAELPRILVDH T TMHV+DS+GS+STGYH LKANT
Sbjct: 687 GTWPTMIDVATACHTLTVFFPDTLSAELPRILVDHNTKTMHVIDSYGSVSTGYHQLKANT 746
Query: 7232 VGQLIKFANDELESDMKLYAVGGLHGXXXXXXXXXXXVIMLARGIYRPKELKSILEHDPT 7053
V QL+ FA+D L+S+MK Y VGG V +L + IYRPK +++++E +P
Sbjct: 747 VSQLVLFASDTLKSEMKHYQVGG-----KKFTVEYEAVKLLIKAIYRPKLMRTLMEDEPY 801
Query: 7052 LLVYSLLSPCVLIAMYKNRTFELAVSEWLQKDTEVASLCNQLEVVARKISVSKVLAVQQQ 6873
L+ ++ SP VLIA++ + + E A++ W+ + + A + L V+A K+SV++ L Q
Sbjct: 802 LICLAMCSPGVLIALFNSGSLETAINYWIARHKDTAQIFALLTVLATKVSVARTLTEQLA 861
Query: 6872 LIAEQASQMIRSVERSQAHSPSRHFVRLLLARIIENQQMDKELIASGFTQLRLDGDLMRE 6693
++++ A+ +++ ++R+ A S V L ++ E + D L+ SGF L + E
Sbjct: 862 ILSDHATDVLKIMDRTFATQHSVSLVHTFLMQLEEKRHTDVSLVGSGFANLSATTHELME 921
Query: 6692 KKFLEALAHSWRDLSWSERCTSIWRSRKHSQSGTGPSKSATSDDLNVTWRERFNSLRGGV 6513
K +L L SWRDLS E+C+ + S + Q + + S DLN + +L
Sbjct: 922 KNYLAELDASWRDLSLLEKCSQMRWSFRSPQQFSNELHPSASTDLNGRYNTSVRALSTRY 981
Query: 6512 AETIRDGRSKIGATIKRKSNELVGKVTCKLLLTSRLLCPDIFRMVNVLTVMYLLLQIFTG 6333
+R +K ++++ +G+ C ++ S PD+ + V++L + ++L I
Sbjct: 982 MNNLRKSVCTKYHNMKIRTHQFIGRQVCNSIMGSSRFFPDLAQCVHILAIFSIVLNIIRT 1041
Query: 6332 VRGHIQAHQQLK------IEKQRLEDDLN-FDMVMRLYNIFYERYPTNAPSLYEFEQYLQ 6174
+ + +LK IE++R L+ FDM+ E+ P+L EF ++L+
Sbjct: 1042 INIYTSECIRLKNCGLSQIEEKRWNKLLHTFDMM--------EKIDGQKPTLIEFTKHLK 1093
Query: 6173 KTNQSAYQYYMKVCGPDADD-EKVEFQAKGACEIELERTVAFVALIMMMFDAERSDCVYK 5997
+ + Y + + + +D E+ +FQAK E LER +A +AL MM+FDA+RSDCVYK
Sbjct: 1094 QWDPELYSEFHSILQDEEEDTEEAQFQAKPDGERNLERIMAIIALTMMVFDADRSDCVYK 1153
Query: 5996 VLSKLRGLMAPIGTESVAFQSIDTVKEILGETKMAIDIEIDTENHQMNRLKGTTFSDWWQ 5817
VL+KL+GL+ + E V FQSID +++ L E +M ID EI ++H +N+L G TF WW
Sbjct: 1154 VLNKLKGLLNTVHQEPVKFQSIDDIQDYLEEREMVIDFEISADDHNINKLAGATFEQWWS 1213
Query: 5816 NQISQGRTIPHYRTEGHFMEFTRANAQTVANSIAHSEHNDLLIMGAVGSGKSTGLPFYLS 5637
NQ+ +PHYRTEG FMEFTRANA VAN IAH H DLLI GAVGSGKSTGLPFYLS
Sbjct: 1214 NQMECNNVLPHYRTEGFFMEFTRANAAHVANEIAHGPHKDLLIRGAVGSGKSTGLPFYLS 1273
Query: 5636 KKGKVLIIEPTKPLAENVHKQLQGNPFMTQATLKMRGCNVFGSAPIHVQTSGYALHYFAH 5457
K+G+VL++EPT+PLA NVHKQL G+PF+ ATLKMRG FGSAPI V TSGYA HY+A+
Sbjct: 1274 KRGRVLMLEPTRPLASNVHKQLAGDPFLVSATLKMRGEATFGSAPITVMTSGYAFHYYAN 1333
Query: 5456 NVAQLAEFKFIIFDECHVHDSAAMAFRCLLSEYDYGGKILKVSATPPGREAVFSTQHAVQ 5277
N QL +F+FIIFDECHV+ S+AMAFR LL+EY Y G+I+KVSATPPGRE F+TQH V+
Sbjct: 1334 NPNQLRDFEFIIFDECHVNGSSAMAFRSLLAEYTYDGRIIKVSATPPGREVEFTTQHPVE 1393
Query: 5276 VKMEENLTFQQFVQMQGTGANGDVIQSGDNILVYVSSYNEVDSLSKLLLDAKHKVTKVDG 5097
+ E LTFQQFV +QGTGA GDV GDNILVYV+SY+EVD+LSK L++ HKVTKVDG
Sbjct: 1394 IVPIERLTFQQFVAVQGTGAVGDVTTKGDNILVYVASYSEVDNLSKGLVEKGHKVTKVDG 1453
Query: 5096 RTMKMGQVEIPTSGTRDKKHFIVATNIIENGVTLDIDVVVDFGMKVVPELDSDNRLIRYT 4917
RTMK+G VEI TSG++ KKHF+VATNIIENGVTLDIDVVVDFG+KVV E+D D+RL RY
Sbjct: 1454 RTMKVGGVEIITSGSQAKKHFVVATNIIENGVTLDIDVVVDFGLKVVAEVDIDSRLTRYV 1513
Query: 4916 KVSISYGERIQRLGRVGRNKEGTALRIGATEKGLSAVPNIVATEAAFYSFAYGLPVMTNG 4737
K SISYGERIQRLGRVGRNK G A+R+G TEKGL A+P ATEAAF FAYGLPVMTN
Sbjct: 1514 KKSISYGERIQRLGRVGRNKPGVAVRVGTTEKGLQAIPVTTATEAAFLCFAYGLPVMTNN 1573
Query: 4736 VAVGVVANCTVPQARTVLHFELPIFYMLHLVRFDGSMHPALHACLKGFKLRDSEIILNKM 4557
V+ ++ NCTV QART++ FE+ FYM H VRFDG+MHP +H L +KLRDSEIILNK+
Sbjct: 1574 VSTNILTNCTVLQARTMMLFEINPFYMCHFVRFDGTMHPEVHRILTPYKLRDSEIILNKV 1633
Query: 4556 AIPNSGVKQWLTAGEYSRIGARNSVDEFTRIPFFSKDVPDKIHEQVWEAVVTFKRDAGFG 4377
AIPN G+ QW TA EY+ G + ++ + R+PF S D+P+++HE++W+ V T K DAGFG
Sbjct: 1634 AIPNKGLMQWPTAKEYAYQGFKMNIPDTVRLPFHSLDIPERLHERMWQIVETHKGDAGFG 1693
Query: 4376 KIQSASACKVAYTLQTDAASITRTVCIIEELIKNEVKKQEYFQTASGIDCGSG-FSLVSL 4200
+I +ASACK+AYTL+TDAASI RT+ I+++LI+NE+K+QEYF+ + C S FSL ++
Sbjct: 1694 RITTASACKIAYTLKTDAASIQRTIHILDKLIENELKRQEYFRNITSASCSSSSFSLTTI 1753
Query: 4199 TNAIRSRHMSNHTAENIAILEAAKGQLEEFRNLGID-PTTRTVTDFGALECVQFQSADGI 4023
TNAIR+RH+ +HT EN+++L+AAK Q+ EF+N+ D +T++GALECVQFQ+ + +
Sbjct: 1754 TNAIRARHIKDHTVENVSVLQAAKAQILEFKNVTFDLDHVYRMTEYGALECVQFQTLESV 1813
Query: 4022 SKQLGLKGKWNKPLITKDILVAGFTMFGGMWMIYNYLK-------RAITTNVEFQASGKR 3864
++ L LKG WNK L+T D+++ G + G + M+ +Y K + NV+FQA KR
Sbjct: 1814 TQHLQLKGHWNKSLLTHDVVICGAVLIGCVLMVGSYFKERCSGVVKRYNENVKFQAKNKR 1873
Query: 3863 QNQKRRFQIARNNKHAFEVNPDETDVEHYFGEAYGKKAQGKGRTRGMGAKSRRFYNMYGF 3684
Q Q+ RF+ AR+NKHA+EV+ D+ D++ YFG AY KK + KG TRGMG K+R+F NMY F
Sbjct: 1874 QRQRLRFREARDNKHAYEVHGDDADIQTYFGSAYTKKGKTKGVTRGMGIKTRKFVNMYNF 1933
Query: 3683 DPAEYTFARYVDPLTGYTLDESALTEVKLVQEHFGKIRHELRMREELEPEAIDYHKKIEV 3504
DP EY+FARYVDPLTGYT DE LT++ LVQ+HFG+IR +L ELE E++ + ++EV
Sbjct: 1934 DPTEYSFARYVDPLTGYTPDEQTLTDIALVQDHFGRIRRKLMEDGELEKESLAQNARLEV 1993
Query: 3503 YFVKDLAKQVLKIDMDPHNPFEIGRNTESIAGYPERKGELRQMGKPTLMSPTLLPAQREY 3324
YFVK+LA Q+LKIDM PHNP + E++AG+PER ELRQ GK +++ LP + +
Sbjct: 1994 YFVKNLASQILKIDMTPHNPLRVCDRIETVAGFPERDMELRQSGKSVMVTAAELPKENPH 2053
Query: 3323 EFDEPVVFESKATFYGMRDYNPISSSVCLLANESDGYEREIHGIGYGSMIITNQHLFQHN 3144
E V FE+K+TF+G+RDYNPI++ VC L + SDG+ ++GIGYGS IITNQHLF N
Sbjct: 2054 PGGEIVEFENKSTFHGLRDYNPIATCVCRLEHNSDGHTSSLYGIGYGSYIITNQHLFIRN 2113
Query: 3143 NGTLSVQSHRGKFFIPNTTQLKMYPFPGRDLLIIQMPKDFPPFPQKLKFRSPVSGDRVCM 2964
NGT++++SH + I N+TQL++YP GRD++IIQ+PKDFPPF ++LKFR P + D+VC+
Sbjct: 2114 NGTINIESHHRTYHIRNSTQLQLYPIEGRDIVIIQLPKDFPPFARRLKFRHPTTTDKVCL 2173
Query: 2963 IGSNFQDKYXXXXXXXXXXXSQKDESVFYRHWISTKTGHCGLPMVSVKDGYILGIHSLTS 2784
+G+NFQ+K ++KD+S F+RHWISTK G CGLP VS KDG +LG+HSLTS
Sbjct: 2174 VGTNFQEKTTTSTVSEASLITRKDDSHFFRHWISTKDGQCGLPAVSTKDGCVLGLHSLTS 2233
Query: 2783 KDDASGFLISFPQDMEKNYLQNAEQVQWTKKWRLNVDLIDWGTLNLTTNKPDNLFRLSKD 2604
+ S F I+FP + EKNYL+ A ++ W K W+LNVD I WG L+L +KP N+F+LSKD
Sbjct: 2234 LVNDSNFFIAFPDNFEKNYLERANELNWVKHWKLNVDKICWGALSLEKDKPSNMFKLSKD 2293
Query: 2603 LLGLMAEPVEFQAHENRWLYERLGGNLHAVARTTNQLVTKHVVKGKCLLFATYLETNDEA 2424
+ L EPV Q+ E++WL++RL GNL A+ART NQLVTKHVVKGKCLLF TYL +A
Sbjct: 2294 IHRLDMEPVGLQSREDKWLFDRLNGNLKAMARTRNQLVTKHVVKGKCLLFETYLNVTPKA 2353
Query: 2423 KQFFQPLMGAYQKSRLNKEAYIKDLFKYNSPTTIGVLEPDKFERAEALVMRLFERVGFSE 2244
K++F P+MGAYQKSRLNKEAYIKDLFKY+SP +G ++ FE A V +LFE GF
Sbjct: 2354 KEYFTPMMGAYQKSRLNKEAYIKDLFKYSSPIVVGDVDCAAFEAACDSVTQLFEGAGFGR 2413
Query: 2243 CEYVTCPDAIFSALNMKAAVGALYHGKKKDYFDSFSEADKAQILKDSCYRLYAGKMGVWN 2064
C YVT IFSALNM AAVGA+Y GKK+DYF F++ DK IL+DSC RLY GKMGVWN
Sbjct: 2414 CNYVTDEQEIFSALNMNAAVGAMYSGKKRDYFKDFTDLDKESILRDSCLRLYQGKMGVWN 2473
Query: 2063 GSLKAELRPLEKVQANKTRSFTAAPIDTLLGGKVCVDDFNNQFYSLNLKAPWSVGMTKFY 1884
GSLKAELR EKV NKTR+FTAAP+DTLLGGK CVDDFNN+FYSLN+ PWSVGMTKFY
Sbjct: 2474 GSLKAELRAKEKVDLNKTRTFTAAPVDTLLGGKTCVDDFNNRFYSLNIACPWSVGMTKFY 2533
Query: 1883 GGWNELMTSLPDGWIYCDADGSQFDSSLTPYLINAVLNLRLHFMEEWDIGEKMLENLYTE 1704
GW+E++ LP+GW+YCDADGSQFDSSL+PYLINAVLNLRLHFMEEWD+G +ML+NLYTE
Sbjct: 2534 KGWDEMLRKLPEGWVYCDADGSQFDSSLSPYLINAVLNLRLHFMEEWDVGAQMLQNLYTE 2593
Query: 1703 IVYTPIATPDGTVIKKYKGNNSGQPSTVVDNTIMVILAMYYSGEVYNPTLSLDDYCKFFV 1524
I+YTPIATPDGT+IKK+KGNNSGQPSTVVDNTIMVILA++YS + T LD++CK+FV
Sbjct: 2594 IIYTPIATPDGTIIKKFKGNNSGQPSTVVDNTIMVILAIHYSYKYLKITKPLDEFCKYFV 2653
Query: 1523 NGDDLLIAVHPNHVDFLQDLQNSFQHLGLKYTFTSRYHTREELWFMSHKAIKVDGVYIPK 1344
NGDDLL+AV P L N+FQ LGL Y F+SR REELWFMSH+ I DG+YIPK
Sbjct: 2654 NGDDLLLAVAPEFEYLLDHFANTFQQLGLNYDFSSRTKNREELWFMSHRGIMTDGLYIPK 2713
Query: 1343 LEEERIVSILEWDRAVLPEHRLEAICASMIEAWGYPSLLHQIRKFYYWVLEQAPYSVLSS 1164
LE ERIVSILEWDRAV P HRLEAICASMIEAWGYP LLH+IRKFYYWVLEQAPYS L+
Sbjct: 2714 LEPERIVSILEWDRAVEPVHRLEAICASMIEAWGYPQLLHEIRKFYYWVLEQAPYSELAQ 2773
Query: 1163 EGKAPYISEVALKHLYLNQ-IEKSELERYMDGLDW-SSTQGIEEVEFQANDTYDAGKKTD 990
GKAPY+SE AL+ LY + + ELERY+ L+ G E V FQAN+T +AG +
Sbjct: 2774 LGKAPYLSEAALRALYTGEATSQDELERYLAALNLEGECGGAEIVAFQANETLNAGASS- 2832
Query: 989 KPEDVEKNHEKENKELTPPPNQEAGPSKGRDKDVDVGTKGTFQVPRLKSIGSKMTLPRVG 810
+ + + Q++ ++ RD+DVD GT GT+Q+PRLK++ +K+ +P+V
Sbjct: 2833 ---STQASRSTRPEAAIDMAPQQSSEARVRDRDVDAGTVGTYQIPRLKALATKINVPKVK 2889
Query: 809 GRVIVNLEHLLTYEPEQVDLSNTRATRSQFDSWYNGIKGAYDLNDSSMGVVLNGLMVWCI 630
GR+IVN HL+ Y P+Q D+SNTR+T+ QF++WYN +K Y LND SM + +NGLMVWCI
Sbjct: 2890 GRMIVNTGHLVNYNPDQTDISNTRSTQKQFEAWYNAVKDEYGLNDESMALAMNGLMVWCI 2949
Query: 629 ENGTSPNIHGHWTMMDGDEQVEYPLRPVVEMAQPTLRQIMSHFSALAEAYIEKRNATKPY 450
ENGTSPN++G W MMDGD+QVE+P+RP++E A+PTLRQIM+HFS LAEAYIEK+N +PY
Sbjct: 2950 ENGTSPNVNGVWLMMDGDQQVEFPIRPILEHAKPTLRQIMAHFSNLAEAYIEKQNLERPY 3009
Query: 449 MPRYGLLRNLRDLSLARYAFDFYEVTARTPVRAREAHMQMKAAALRNSDNKMFGLDGNSG 270
MPRYGL RNL D +LAR+AFDFYEVT+RTP RA+EAH QMK AALR +K+FGLDG
Sbjct: 3010 MPRYGLQRNLTDFNLARFAFDFYEVTSRTPARAKEAHFQMKTAALRGKQSKLFGLDGKVN 3069
Query: 269 DKEEDTERHTANDVNRNMHHLMGVRM 192
++EDTERHTA+DVN+NMH L+G+ M
Sbjct: 3070 TQDEDTERHTADDVNKNMHSLLGISM 3095
>dbj|BAJ08151.1| polyprotein [Turnip mosaic virus]
Length = 3164
Score = 2973 bits (7708), Expect = 0.0
Identities = 1532/3011 (50%), Positives = 2031/3011 (67%), Gaps = 39/3011 (1%)
Frame = -2
Query: 9110 QWEAGAQSVEAIVEPSAPRAQTVS-EYRRPLAIDDKPSLAKRTKRVVHTPIRYSVENIIR 8934
+W++ + PSA + + +RPL PS+ K+T V + +IR
Sbjct: 173 EWDSTVSKISIGGGPSANAMEAEAVRIKRPL--HKTPSMKKKTVHKVCRMNGQGTDMLIR 230
Query: 8933 AIANQNKNCKLDLEIISTKKATRARHTMWRNRLYVKAQTKHELGVRHKRDILVCEWGRQV 8754
++ K +E +K+ + + + Q H LG R +RD+ +
Sbjct: 231 SLIKIFKAKNASIEYTG-RKSIKIDFVKKERVKFARVQVAHLLGKRAQRDLSTGVEENRF 289
Query: 8753 LRLLVSKTAGNRAHDANMFTQGSSGIIIMSHCLSGNVSASRGNLFIVRGRDGEKLYDSQS 8574
+ +L + G RA + + G SGIII L+ S S F+VRG KLYD++
Sbjct: 290 IDILSEYSGGKRAINPGVVCAGWSGIIISGGALTQKQSRSPSKAFVVRGEHEGKLYDARI 349
Query: 8573 VVTSHVASRMRHYSA-GERFWKGYGRGFNSH-TPSVGHQCRSDLDVEECGYVAAMATQVL 8400
VT ++ ++ H+SA G FWKG+ R F ++ + + H C + LDV ECG VAA+ +
Sbjct: 350 KVTKMMSHKIVHFSAAGANFWKGFDRCFLAYRSDNREHTCYTGLDVTECGEVAALMCLAM 409
Query: 8399 FPCGHITCQQCADNFVSCSKNDLKEEYGTRIQGLIDEVQNKHPKFAHVVKFLSLFNDYLR 8220
FPCG ITC C + R+ L + +++ +P+F H V+ L + L
Sbjct: 410 FPCGKITCPDCVTDSELSQGQASGPSMKNRLLQLREVIKSSYPRFKHAVQILDRYEQSLN 469
Query: 8219 FSNENIRQFSEAKRIIGDRKEAPFQQLAALNDLLIKVGECTSEEAALGTANLLELVRFQK 8040
+NEN + F+E + + ++A F LN +LIK TSEE A T LLE+ R+ K
Sbjct: 470 SANENYQDFAEIQSLTDGMEKAAFPHANKLNAILIKGATATSEEFAQATKYLLEITRYMK 529
Query: 8039 NRTDNISGTSLTHFRNKVSSKIHVNLDLMCDNQLDDDGNFKWRQRGFHAKRMFDNFYEVV 7860
NRT+NI SL FRNK+S K H+N LMCDNQLD +GNF W +RG+HAKR F N++E++
Sbjct: 530 NRTENIEKGSLKSFRNKISQKAHINPTLMCDNQLDRNGNFIWGERGYHAKRFFSNYFEII 589
Query: 7859 NPSKGYDSFIVRTNPNGVRKTAIGNLVISTNMATFREQMRGEPVEPQALSLACTSKLKGS 7680
+P KGY + R PNG RK AIG L++ TN REQMRGEPVEP +++ C SK +G
Sbjct: 590 DPKKGYTQYETRIVPNGARKLAIGKLIVPTNFEVLREQMRGEPVEPHPITVECVSKSQGD 649
Query: 7679 YVYPCCCVTTDTGKPIESEMLAPTKDHLVIGNTGDSKFVTVPKILEDGMYVAKEGYCYVN 7500
+VY CCCVTT++G P+ SE+ PTK HLVIGN+GD K+V +P+I E+ MY+AKEGYCY+N
Sbjct: 650 FVYACCCVTTESGDPVLSEIKMPTKHHLVIGNSGDPKYVDLPEIEENKMYIAKEGYCYIN 709
Query: 7499 IFVAMLINVSDVQAKDYTRRVRDYAIPTLGKWPTLINLATVCHFLTILYPDIKSAELPRI 7320
IF+AML+NV + QAK++T+ VRD + LGKWPTL+++AT C+FL + YPD+ +AELPR+
Sbjct: 710 IFLAMLVNVKESQAKEFTKVVRDKLVGELGKWPTLLDVATACYFLKVFYPDVANAELPRM 769
Query: 7319 LVDHKTCTMHVVDSFGSLSTGYHILKANTVGQLIKFANDELESDMKLYAVGG-----LHG 7155
LVDHKT +HVVDS+GSLSTGYHILK NTV QLIKF LES +K Y VGG +HG
Sbjct: 770 LVDHKTKIIHVVDSYGSLSTGYHILKTNTVEQLIKFTRHNLESSLKHYRVGGTKWEDVHG 829
Query: 7154 XXXXXXXXXXXVIMLARGIYRPKELKSILEHDPTLLVYSLLSPCVLIAMYKNRTFELAVS 6975
L +G+YRPK+LK + +P L +Y+LLSP V++A Y + + E ++
Sbjct: 830 AKNIDDPQWCIK-RLVKGVYRPKQLKEDMLANPFLPLYALLSPGVILAFYNSGSLEYLMN 888
Query: 6974 EWLQKDTEVASLCNQLEVVARKISVSKVLAVQQQLIAEQASQMIRS-VERSQAHSPSRHF 6798
+++ D+ VA L L+ +A+K+SVS+ + Q Q+I +++ + +++ +
Sbjct: 889 HYIRVDSNVAVLLVVLKSLAKKVSVSQSVLAQLQIIERSLPELVEARANIAESDGAAAQA 948
Query: 6797 VRLLLARIIENQQMDKELIASGFTQLRLDGDLMREKKFLEALAHSWRDLSWSERCTSIWR 6618
L +I + + EL+ G+T LR + EK +L+ L +W +LSW ERC +
Sbjct: 949 CNRFLGMLIHRSEPNNELLDGGYTTLRDHSIAILEKSYLQILDEAWSELSWLERCAVRYY 1008
Query: 6617 SRKHSQSGTGPSKSATSDDLNVTWRERFNSLRGGVAETIRDGRSKIGATIKRKSNELVGK 6438
S K + + DL + E S + ++ S + + + + + K
Sbjct: 1009 SSKQAIFSQRDLPMQSGVDLGGRYSESVVSSYEWSKQRMKKLYSSMCSKTRNSMSCVSRK 1068
Query: 6437 VTCKLLLTSRLLCPDIFRMVNVLTVMYLLLQIFTGVRGHIQAHQQLKI-----EKQRLED 6273
V+ + T L PDIFR +NVL + LLL I + + A ++LK+ E++++E
Sbjct: 1069 VSSSICRTINYLVPDIFRFINVLICISLLLTIASETNRIVTAQRKLKLDVVEAERKKIEW 1128
Query: 6272 DLNFDMVMRLYNIFYERYPTNAPSLYEFEQYLQKTNQSAYQYYMKVCGPDADDEKVEFQA 6093
+L F ++ P+ EF +Y+ +Y + +++ V QA
Sbjct: 1129 ELAF------HHSILTHSANQHPTFDEFVEYINAKAPHLSEYI------EPEEKAVVHQA 1176
Query: 6092 KGACEIELERTVAFVALIMMMFDAERSDCVYKVLSKLRGLMAPIGTESVAFQSIDTVKEI 5913
K E ELER +AF+AL++MMFDAERSDCV K+L+KL+GL++ + +V Q+++ +++
Sbjct: 1177 KRQSEQELERIIAFIALVLMMFDAERSDCVTKILNKLKGLVSTV-EPTVYHQALNDIEDD 1235
Query: 5912 LGETKMAIDIEIDTENHQMNRLKGT-TFSDWWQNQISQGRTIPHYRTEGHFMEFTRANAQ 5736
L E + +D E++ + + +L TF+ WW +Q+S+G TIPHYRTEG FM FTRA A
Sbjct: 1236 LSERNLFVDFELNNDGELIQQLPAEKTFASWWNHQLSRGYTIPHYRTEGKFMTFTRATAT 1295
Query: 5735 TVANSIAHSEHNDLLIMGAVGSGKSTGLPFYLSKKGKVLIIEPTKPLAENVHKQLQGNPF 5556
+A IAH D+L+MGAVGSGKSTGLP++LS+KG VL++EPT+PLAENVHKQL PF
Sbjct: 1296 EIAGRIAHESDKDILLMGAVGSGKSTGLPYHLSRKGNVLLLEPTRPLAENVHKQLSQAPF 1355
Query: 5555 MTQATLKMRGCNVFGSAPIHVQTSGYALHYFAHNVAQLAEFKFIIFDECHVHDSAAMAFR 5376
TL+MRG FGSAPI V TSG+AL+YFA+N A++ EF FIIFDECHVHD++AMA R
Sbjct: 1356 HQNTTLRMRGLTAFGSAPISVMTSGFALNYFANNRARIEEFDFIIFDECHVHDASAMAMR 1415
Query: 5375 CLLSEYDYGGKILKVSATPPGREAVFSTQHAVQVKMEENLTFQQFVQMQGTGANGDVIQS 5196
CLL + DY GKI+KVSATPPGRE FSTQ+ V + E+ L+FQ FV QG+G+N DVI
Sbjct: 1416 CLLHDCDYSGKIIKVSATPPGREVEFSTQYPVTISTEDTLSFQNFVNAQGSGSNCDVISK 1475
Query: 5195 GDNILVYVSSYNEVDSLSKLLLDAKHKVTKVDGRTMKMGQVEIPTSGTRDKKHFIVATNI 5016
GDNILVYV+SYNEVD+LSKLL + KVTKVDGRTMK+G +EI TSGT KKHFIVATNI
Sbjct: 1476 GDNILVYVASYNEVDTLSKLLAEKDFKVTKVDGRTMKVGNIEITTSGTPSKKHFIVATNI 1535
Query: 5015 IENGVTLDIDVVVDFGMKVVPELDSDNRLIRYTKVSISYGERIQRLGRVGRNKEGTALRI 4836
IENGVTLDIDVV DFG KV+P LD+DNR++ TK SI+YGERIQRLGRVGR+K G ALRI
Sbjct: 1536 IENGVTLDIDVVADFGTKVLPYLDTDNRMLSTTKTSINYGERIQRLGRVGRHKPGHALRI 1595
Query: 4835 GATEKGLSAVPNIVATEAAFYSFAYGLPVMTNGVAVGVVANCTVPQARTVLHFELPIFYM 4656
G TEKGLS VP+ +ATEAA F YGLPV+TN V+ ++ N TV QART+ FE+ FY
Sbjct: 1596 GHTEKGLSEVPSCIATEAALKCFTYGLPVITNNVSTSILGNVTVKQARTMSVFEITPFYT 1655
Query: 4655 LHLVRFDGSMHPALHACLKGFKLRDSEIILNKMAIPNSGVKQWLTAGEYSRIGARNSVDE 4476
+VR+DGSMHP +H LK FKLRDSEI+LNK+AIPN GV WLTA EY+R+GA
Sbjct: 1656 SQVVRYDGSMHPQVHELLKRFKLRDSEIVLNKLAIPNRGVNAWLTASEYARLGANVEDRR 1715
Query: 4475 FTRIPFFSKDVPDKIHEQVWEAVVTFKRDAGFGKIQSASACKVAYTLQTDAASITRTVCI 4296
RIPF +D+P+K+H ++W+ +V FK DAGFG++ SASA KVAYTLQTD SI RTV I
Sbjct: 1716 DVRIPFMCRDIPEKLHLEMWDVIVKFKGDAGFGRLSSASASKVAYTLQTDVNSIQRTVTI 1775
Query: 4295 IEELIKNEVKKQEYFQT-ASGIDCGSGFSLVSLTNAIRSRHMSNHTAENIAILEAAKGQL 4119
I+ LI E +KQEYF+T S S FSL S+TNAI+SR M +HT ENI+ILE AK QL
Sbjct: 1776 IDTLIAEERRKQEYFKTVTSNCVSSSSFSLQSITNAIKSRMMKDHTCENISILEGAKSQL 1835
Query: 4118 EEFRNLGIDPTTRTVTD---------FGALECVQFQSADGISKQLGLKGKWNKPLITKDI 3966
EFRNL D + T TD +GALE V QS + +SK L LKGKWNK LIT+D+
Sbjct: 1836 LEFRNLNADHSFTTKTDGISRHFMSEYGALEAVHHQSTNDMSKFLKLKGKWNKTLITRDV 1895
Query: 3965 LVAGFTMFGGMWMIYNYLKRAITTNVEFQASGKRQNQKRRFQIARNNKHAFEVNPDETDV 3786
LV + GG+WMI L+ +T V +A GKRQ QK +F+ AR+NK EV D+ +
Sbjct: 1896 LVICGVLGGGIWMILQRLQSGVTEPVIHEAKGKRQRQKLKFRNARDNKMGREVYGDDDTI 1955
Query: 3785 EHYFGEAYGKKAQGKGRTRGMGAKSRRFYNMYGFDPAEYTFARYVDPLTGYTLDESALTE 3606
EH+FG+AY KK + KGRTRG+G K+R+F NMYGFDP +++ R+VDPLTG TLDES T+
Sbjct: 1956 EHFFGDAYTKKGKSKGRTRGLGHKNRKFVNMYGFDPEDFSAVRFVDPLTGATLDESPFTD 2015
Query: 3605 VKLVQEHFGKIRHELRMREELEPEAIDYHKKIEVYFVKDLAKQVLKIDMDPHNPFEIGRN 3426
+ L+Q+HFG IR++L +ELEP+AI YHK I+ Y+ + + LK+D+ PH P ++
Sbjct: 2016 ITLIQKHFGDIRNDLLEEDELEPQAIQYHKTIQAYYTNNKTGKALKVDLTPHIPLKVCDL 2075
Query: 3425 TESIAGYPERKGELRQMGKPTLMSPTLLP-AQREYEFDEPVVFESKATFYGMRDYNPISS 3249
+IAG+PER+ ELRQ GK +S +P A E PV ES + F G+RDYNPIS+
Sbjct: 2076 HATIAGFPEREFELRQTGKAQPISIDEVPKANTEL---VPVDHESSSMFRGLRDYNPISN 2132
Query: 3248 SVCLLANESDGYEREIHGIGYGSMIITNQHLFQHNNGTLSVQSHRGKFFIPNTTQLKMYP 3069
++C L N SDG ++G+G+G +I+TN+HLF+ NNG L ++S G+F I NTTQL + P
Sbjct: 2133 NICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNGELLIKSRHGEFVIRNTTQLHLLP 2192
Query: 3068 FPGRDLLIIQMPKDFPPFPQKLKFRSPVSGDRVCMIGSNFQDKYXXXXXXXXXXXSQKDE 2889
P RDLL+I++PKD PPFPQKL FR P G+R+CM+GSNFQ K +
Sbjct: 2193 IPDRDLLLIRLPKDIPPFPQKLGFRQPEKGERICMVGSNFQTKSITSVVSETSTVMPVEN 2252
Query: 2888 SVFYRHWISTKTGHCGLPMVSVKDGYILGIHSLTSKDDASGFLISFPQDMEKNYLQNAEQ 2709
S F++HWISTK G CG PMVS KDG ILG+HSL + ++ + +FP D + YL E
Sbjct: 2253 SQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYFAAFPDDFAEKYLYTIET 2312
Query: 2708 VQWTKKWRLNVDLIDWGTLNLTTNKPDNLFRLSKDLLGLMAEPVEFQAHENRWLYERLGG 2529
+W K W+ N I WG+LN+ +P LF++SK + L + V Q +NRW+YE+L G
Sbjct: 2313 HEWVKHWKYNTSGISWGSLNIQAAQPAGLFKVSKLISDLDSTAVYAQTQQNRWMYEQLTG 2372
Query: 2528 NLHAVARTTNQLVTKHVVKGKCLLFATYLETNDEAKQFFQPLMGAYQKSRLNKEAYIKDL 2349
NL A+A +QLVTKH VKGKC +F YL+ +DEA+++FQP++G YQKSRLN+EAY KDL
Sbjct: 2373 NLKAIAHCPSQLVTKHTVKGKCQMFDLYLKLHDEAREYFQPMLGQYQKSRLNREAYAKDL 2432
Query: 2348 FKYNSPTTIGVLEPDKFERAEALVMRLFERVGFSECEYVTCPDAIFSALNMKAAVGALYH 2169
KY +P G ++ D FE+ +V+ GF C YVT IF ALNMK+AVGALY
Sbjct: 2433 LKYATPIEAGNIDCDLFEKTVEIVISDLWGYGFETCNYVTDETDIFEALNMKSAVGALYK 2492
Query: 2168 GKKKDYFDSFSEADKAQILKDSCYRLYAGKMGVWNGSLKAELRPLEKVQANKTRSFTAAP 1989
GKKKDYF F+ K +ILK SC RL+ GKMGVWNGSLKAELRPLEKV+ANKTR+FTAAP
Sbjct: 2493 GKKKDYFAEFTPEMKEEILKQSCERLFLGKMGVWNGSLKAELRPLEKVEANKTRTFTAAP 2552
Query: 1988 IDTLLGGKVCVDDFNNQFYSLNLKAPWSVGMTKFYGGWNELMTSLPDGWIYCDADGSQFD 1809
+DTLLGGKVCVDDFNNQFY NL APWSVGMTKFY GWN L+ SLPD WIYCDADGSQFD
Sbjct: 2553 LDTLLGGKVCVDDFNNQFYDHNLSAPWSVGMTKFYCGWNRLLESLPDNWIYCDADGSQFD 2612
Query: 1808 SSLTPYLINAVLNLRLHFMEEWDIGEKMLENLYTEIVYTPIATPDGTVIKKYKGNNSGQP 1629
SSL+PYLINAVLN+RL FMEEWD+GE ML NLYTEIVYTPI+TPDGT++KK+KGNNSGQP
Sbjct: 2613 SSLSPYLINAVLNIRLEFMEEWDVGEVMLRNLYTEIVYTPISTPDGTLVKKFKGNNSGQP 2672
Query: 1628 STVVDNTIMVILAMYYSGEVYN-PTLSLDDYCKFFVNGDDLLIAVHPNHVDFLQDLQNSF 1452
STVVDNT+MVILA+ YS + P+ D +FFVNGDDLL++VHP + L + ++F
Sbjct: 2673 STVVDNTLMVILAVNYSLKKSGIPSELRDSIVRFFVNGDDLLLSVHPKYEYILDTMADNF 2732
Query: 1451 QHLGLKYTFTSRYHTREELWFMSHKAIKVDGVYIPKLEEERIVSILEWDRAVLPEHRLEA 1272
+ LGLKYTF SR + +LWFMSH+ K +G++IPKLE ERIVSILEWDR+ P HRLEA
Sbjct: 2733 RELGLKYTFDSRTKEKSDLWFMSHQGHKREGIWIPKLEPERIVSILEWDRSKEPCHRLEA 2792
Query: 1271 ICASMIEAWGYPSLLHQIRKFYYWVLEQAPYSVLSSEGKAPYISEVALKHLYLN-QIEKS 1095
ICA+MIE+WGY L H+IRKFY WV+EQAP++ L+ EGKAPYI+E AL+ LYL+ + +
Sbjct: 2793 ICAAMIESWGYDKLTHEIRKFYAWVIEQAPFNSLAQEGKAPYIAETALRKLYLDKEPSQE 2852
Query: 1094 ELERYMDGLDWSSTQGIEE-VEFQANDTYDAG---------KKTDKPEDVEKNHEKENKE 945
+L +Y++ + G E V QA +T DAG K+ + E EK EK+ K+
Sbjct: 2853 DLTQYLEAIFEDYEDGTEVCVYHQAGETLDAGLTEEQKQAEKERKEREKAEKEREKQ-KQ 2911
Query: 944 LTPPPNQEAGPSKG-RDKDVDVGTKGTFQVPRLKSIGSKMTLPRVGGRVIVNLEHLLTYE 768
L + + +G RDK+V+ GT GTF VPRLKS+ SKM +P+ ++ +NL+HL+ Y
Sbjct: 2912 LALKKGKNSSQEEGERDKEVNAGTSGTFSVPRLKSLASKMRVPKYEKKLALNLDHLILYT 2971
Query: 767 PEQVDLSNTRATRSQFDSWYNGIKGAYDLNDSSMGVVLNGLMVWCIENGTSPNIHGHWTM 588
PEQ DLSNTR+T+ QF++W+ G+ Y+L + M ++LNGLMVWCIENGTSPNI+G W M
Sbjct: 2972 PEQTDLSNTRSTQKQFNTWFEGVMADYELTEDKMQIILNGLMVWCIENGTSPNINGMWVM 3031
Query: 587 MDGDEQVEYPLRPVVEMAQPTLRQIMSHFSALAEAYIEKRNATKPYMPRYGLLRNLRDLS 408
MDGD+QVE+P++P+++ A+PT RQIM+HFS +AEAYIEKRN +PYMPRYGL RNL D+S
Sbjct: 3032 MDGDDQVEFPIKPLIDHAKPTFRQIMAHFSDVAEAYIEKRNQDRPYMPRYGLQRNLTDMS 3091
Query: 407 LARYAFDFYEVTARTPVRAREAHMQMKAAALRNSDNKMFGLDGNSGDKEEDTERHTANDV 228
LARYAFDFYE+T+RTP+RAREAH+QMKAAALR ++N +FGLDGN G E+TERHT DV
Sbjct: 3092 LARYAFDFYEMTSRTPIRAREAHIQMKAAALRGANNNLFGLDGNVGTTVENTERHTTEDV 3151
Query: 227 NRNMHHLMGVR 195
NRNMH+L+GV+
Sbjct: 3152 NRNMHNLLGVK 3162
>dbj|BAJ08152.1| polyprotein [Turnip mosaic virus]
Length = 3164
Score = 2969 bits (7696), Expect = 0.0
Identities = 1532/3022 (50%), Positives = 2035/3022 (67%), Gaps = 41/3022 (1%)
Frame = -2
Query: 9137 RETTHKWLTQWEAGAQSVEAIVEPSAPRAQTVS-EYRRPLAIDDKPSLAKRTKRVVHTPI 8961
R + + +W++ + PSA + + +RPL PS+ K+T V
Sbjct: 164 RNSQQPIVLEWDSTVSKISIGGGPSANTIEAEAVRTKRPL--HKTPSIKKKTVHKVCRMN 221
Query: 8960 RYSVENIIRAIANQNKNCKLDLEIISTKKATRARHTMWRNRLYVKAQTKHELGVRHKRDI 8781
+ +IR++ K +E +K+ + + + Q H LG R +RD+
Sbjct: 222 GQGTDMLIRSLIKIFKAKNASIEYTG-RKSIKIDFVKKERVKFARVQVAHLLGKRAQRDL 280
Query: 8780 LVCEWGRQVLRLLVSKTAGNRAHDANMFTQGSSGIIIMSHCLSGNVSASRGNLFIVRGRD 8601
+ + +L + G R + + G SGIII L+ S S F+VRG
Sbjct: 281 STGVEENRFIDILSEYSGGKRTINPGVVCAGWSGIIISGGALTQRQSRSPSKAFVVRGEH 340
Query: 8600 GEKLYDSQSVVTSHVASRMRHYSA-GERFWKGYGRGFNSH-TPSVGHQCRSDLDVEECGY 8427
KLYD++ VT ++ ++ H+SA G FWKG+ R F ++ + + H C + LDV ECG
Sbjct: 341 EGKLYDARIKVTKMMSHKIVHFSAAGANFWKGFDRCFLAYRSDNREHTCYTGLDVTECGE 400
Query: 8426 VAAMATQVLFPCGHITCQQCADNFVSCSKNDLKEEYGTRIQGLIDEVQNKHPKFAHVVKF 8247
VAA+ +FPCG ITC C + + R+ L + +++ +P+F H V+
Sbjct: 401 VAALMCLAMFPCGKITCPDCVTDSELSQGQASEPSMKNRLSQLREVIKSSYPRFKHAVQI 460
Query: 8246 LSLFNDYLRFSNENIRQFSEAKRIIGDRKEAPFQQLAALNDLLIKVGECTSEEAALGTAN 8067
L + L +NEN + F+E + + ++A F LN +LIK TSEE A T
Sbjct: 461 LDRYEQSLNSANENYQDFAEIQSLTDGMEKAAFPHANKLNAILIKGATATSEEFAQATKY 520
Query: 8066 LLELVRFQKNRTDNISGTSLTHFRNKVSSKIHVNLDLMCDNQLDDDGNFKWRQRGFHAKR 7887
LLE+ R+ KNRT+NI SL FRNK+S K H+N LMCDNQLD +GNF W +RG+HAKR
Sbjct: 521 LLEITRYMKNRTENIEKGSLKSFRNKISQKAHINPTLMCDNQLDRNGNFIWGERGYHAKR 580
Query: 7886 MFDNFYEVVNPSKGYDSFIVRTNPNGVRKTAIGNLVISTNMATFREQMRGEPVEPQALSL 7707
F N++E+++P KGY + R PNG RK AIG L++ TN REQMRGEPVEP +++
Sbjct: 581 FFSNYFEIIDPKKGYTQYETRIVPNGSRKLAIGKLIVPTNFEVLREQMRGEPVEPHPITV 640
Query: 7706 ACTSKLKGSYVYPCCCVTTDTGKPIESEMLAPTKDHLVIGNTGDSKFVTVPKILEDGMYV 7527
C SK +G +V+ CCCVTT++G P+ SE+ PTK HLVIGN+GD K+V +P+I E+ MY+
Sbjct: 641 ECVSKSQGDFVHACCCVTTESGDPVLSEIKMPTKHHLVIGNSGDPKYVDLPEIEENKMYI 700
Query: 7526 AKEGYCYVNIFVAMLINVSDVQAKDYTRRVRDYAIPTLGKWPTLINLATVCHFLTILYPD 7347
AKEGYCY+NIF+AML+NV + QAK++T+ VRD + LGKWPTL+++AT C+FL + YPD
Sbjct: 701 AKEGYCYINIFLAMLVNVKESQAKEFTKVVRDKLVGELGKWPTLLDVATACYFLKVFYPD 760
Query: 7346 IKSAELPRILVDHKTCTMHVVDSFGSLSTGYHILKANTVGQLIKFANDELESDMKLYAVG 7167
+ +AELPR+LVDH+T +HVVDS+GSLSTGYHILK NTV QLIKF LES +K Y VG
Sbjct: 761 VANAELPRMLVDHRTKIIHVVDSYGSLSTGYHILKTNTVEQLIKFTRHNLESSLKHYRVG 820
Query: 7166 G-----LHGXXXXXXXXXXXVIMLARGIYRPKELKSILEHDPTLLVYSLLSPCVLIAMYK 7002
G +HG L +G+YRPK+LK + +P L +Y+LLSP V++A Y
Sbjct: 821 GTEWEDVHGAKNIDDPQWCIK-RLVKGVYRPKQLKEDMLANPFLPLYALLSPGVILAFYN 879
Query: 7001 NRTFELAVSEWLQKDTEVASLCNQLEVVARKISVSKVLAVQQQLIAEQASQMIRSVERSQ 6822
+ + E ++ +++ D+ VA L L+ +A+K+SVS+ + Q Q+I +++ + R+
Sbjct: 880 SGSLEYLMNHYIRVDSNVAVLLVVLKSLAKKVSVSQSVLAQLQIIERSLPELVEA--RAN 937
Query: 6821 AHSPSRHFVRL---LLARIIENQQMDKELIASGFTQLRLDGDLMREKKFLEALAHSWRDL 6651
P R + L +I + + EL+ G+T LR + EK +L+ L +W +L
Sbjct: 938 IAEPDRAAAQACNRFLGMLIHMSEPNNELLDGGYTTLRDHSIAILEKSYLQILDEAWSEL 997
Query: 6650 SWSERCTSIWRSRKHSQSGTGPSKSATSDDLNVTWRERFNSLRGGVAETIRDGRSKIGAT 6471
SW ERC + S K + + DL + E S + ++ S + +
Sbjct: 998 SWLERCAVRYYSSKQAIFSQRDLPMQSGVDLGGRYSESVVSSYEWSKQRMKKLYSSMCSK 1057
Query: 6470 IKRKSNELVGKVTCKLLLTSRLLCPDIFRMVNVLTVMYLLLQIFTGVRGHIQAHQQLKI- 6294
+ + + KV+ + T L PDIFR +NVL + LLL I + + A ++LK+
Sbjct: 1058 TRNSMSCVSRKVSSSICRTINYLVPDIFRFINVLICISLLLTIASETNRIVTAQRKLKLD 1117
Query: 6293 ----EKQRLEDDLNFDMVMRLYNIFYERYPTNAPSLYEFEQYLQKTNQSAYQYYMKVCGP 6126
E++++E +L F ++ P+L EF +Y+ +Y
Sbjct: 1118 VVEAERKKIEWELAF------HHSILTHSANQHPTLDEFVEYINAKAPHLSEYI------ 1165
Query: 6125 DADDEKVEFQAKGACEIELERTVAFVALIMMMFDAERSDCVYKVLSKLRGLMAPIGTESV 5946
+ +++ V QAK E ELER +AF+AL++MMFDAERSDCV K+L+KL+GL++ + +V
Sbjct: 1166 EPEEKAVVHQAKRQSEQELERIIAFIALVLMMFDAERSDCVTKILNKLKGLVSTV-EPTV 1224
Query: 5945 AFQSIDTVKEILGETKMAIDIEIDTENHQMNRLKGT-TFSDWWQNQISQGRTIPHYRTEG 5769
Q+++ +++ L E + +D E++ + + +L TF+ WW +Q+S+G TIPHYRTEG
Sbjct: 1225 YHQALNDIEDDLSERNLFVDFELNNDGELIQQLPAEKTFASWWNHQLSRGYTIPHYRTEG 1284
Query: 5768 HFMEFTRANAQTVANSIAHSEHNDLLIMGAVGSGKSTGLPFYLSKKGKVLIIEPTKPLAE 5589
FM FTRA A +A IAH D+L+MGAVGSGKSTGLP++LS+KG VL++EPT+PLAE
Sbjct: 1285 KFMTFTRATATEIAGRIAHESDKDILLMGAVGSGKSTGLPYHLSRKGNVLLLEPTRPLAE 1344
Query: 5588 NVHKQLQGNPFMTQATLKMRGCNVFGSAPIHVQTSGYALHYFAHNVAQLAEFKFIIFDEC 5409
NVHKQL PF TL+MRG FGSAPI V TSG+AL+YFA+N A++ EF F+IFDEC
Sbjct: 1345 NVHKQLSQAPFHQNTTLRMRGLTAFGSAPISVMTSGFALNYFANNRARIEEFDFVIFDEC 1404
Query: 5408 HVHDSAAMAFRCLLSEYDYGGKILKVSATPPGREAVFSTQHAVQVKMEENLTFQQFVQMQ 5229
HVHD++AMA RCLL + DY GKI+KVSATPPGRE FSTQ+ V + E+ L+FQ FV Q
Sbjct: 1405 HVHDASAMAMRCLLHDCDYSGKIIKVSATPPGREVEFSTQYPVTISTEDTLSFQNFVNAQ 1464
Query: 5228 GTGANGDVIQSGDNILVYVSSYNEVDSLSKLLLDAKHKVTKVDGRTMKMGQVEIPTSGTR 5049
G+G+N DVI GDNILVYV+SYNEVD+LSKLL + KVTKVDGRTMK+G +EI TSGT
Sbjct: 1465 GSGSNCDVISKGDNILVYVASYNEVDTLSKLLAEKDFKVTKVDGRTMKVGNIEITTSGTP 1524
Query: 5048 DKKHFIVATNIIENGVTLDIDVVVDFGMKVVPELDSDNRLIRYTKVSISYGERIQRLGRV 4869
KKHFIVATNIIENGVTLDIDVV DFG KV+P LD+DNR++ TK SI+YGERIQRLGRV
Sbjct: 1525 SKKHFIVATNIIENGVTLDIDVVADFGTKVLPYLDTDNRMLSTTKTSINYGERIQRLGRV 1584
Query: 4868 GRNKEGTALRIGATEKGLSAVPNIVATEAAFYSFAYGLPVMTNGVAVGVVANCTVPQART 4689
GR+K G ALRIG TEKGLS VP+ +ATEAA F YGLPV+TN V+ ++ N TV QART
Sbjct: 1585 GRHKPGHALRIGHTEKGLSEVPSCIATEAALKCFTYGLPVITNNVSTSILGNVTVKQART 1644
Query: 4688 VLHFELPIFYMLHLVRFDGSMHPALHACLKGFKLRDSEIILNKMAIPNSGVKQWLTAGEY 4509
+ FE+ FY +VR+DGSMHP +H LK FKLRDSEI+LNK+AIPN GV WLTA EY
Sbjct: 1645 MSVFEITPFYTSQVVRYDGSMHPQVHELLKRFKLRDSEIVLNKLAIPNRGVNAWLTASEY 1704
Query: 4508 SRIGARNSVDEFTRIPFFSKDVPDKIHEQVWEAVVTFKRDAGFGKIQSASACKVAYTLQT 4329
+R+GA RIPF +D+P+K+H ++W+ +V FK DAGFG++ SASA KVAYTLQT
Sbjct: 1705 ARLGANVEDRRDVRIPFMCRDIPEKLHLEMWDVIVKFKSDAGFGRLSSASASKVAYTLQT 1764
Query: 4328 DAASITRTVCIIEELIKNEVKKQEYFQT-ASGIDCGSGFSLVSLTNAIRSRHMSNHTAEN 4152
D SI RTV II+ LI E +KQEYF+T S S FSL S+TNAI+SR M +HT EN
Sbjct: 1765 DVNSIQRTVTIIDTLIAEERRKQEYFKTVTSNCVSSSSFSLQSITNAIKSRMMKDHTCEN 1824
Query: 4151 IAILEAAKGQLEEFRNLGIDPTTRTVTD---------FGALECVQFQSADGISKQLGLKG 3999
I+ LE AK QL EFRNL D + T TD +GALE V Q+ + +SK L LKG
Sbjct: 1825 ISTLEGAKSQLLEFRNLNADHSFTTKTDGISRHFMSEYGALEAVHHQNTNDMSKFLKLKG 1884
Query: 3998 KWNKPLITKDILVAGFTMFGGMWMIYNYLKRAITTNVEFQASGKRQNQKRRFQIARNNKH 3819
KWNK LIT+D+LV + GG+WMI L+ +T V +A GKRQ QK +F+ AR+NK
Sbjct: 1885 KWNKTLITRDVLVICGVLGGGIWMILQRLQSGVTEPVVHEAKGKRQRQKLKFRNARDNKM 1944
Query: 3818 AFEVNPDETDVEHYFGEAYGKKAQGKGRTRGMGAKSRRFYNMYGFDPAEYTFARYVDPLT 3639
EV D+ +EH+FG+AY KK + KGRTRG+G K+R+F NMYGFDP +++ R+VDPLT
Sbjct: 1945 GREVYGDDDTIEHFFGDAYTKKGKSKGRTRGLGHKNRKFVNMYGFDPEDFSAVRFVDPLT 2004
Query: 3638 GYTLDESALTEVKLVQEHFGKIRHELRMREELEPEAIDYHKKIEVYFVKDLAKQVLKIDM 3459
G TLDES T++ LVQ+HFG IR +L +ELEP+A+ +HK I+ Y+ + + LK+D+
Sbjct: 2005 GATLDESPFTDITLVQKHFGDIRTDLLKEDELEPQALQHHKTIQAYYTNNKTGKALKVDL 2064
Query: 3458 DPHNPFEIGRNTESIAGYPERKGELRQMGKPTLMSPTLLP-AQREYEFDEPVVFESKATF 3282
PH P ++ +IAG+PER+ ELRQ GK +S +P A E PV ES + F
Sbjct: 2065 TPHIPLKVCDLHATIAGFPEREFELRQTGKAQPISINEVPKANTEL---VPVGHESNSMF 2121
Query: 3281 YGMRDYNPISSSVCLLANESDGYEREIHGIGYGSMIITNQHLFQHNNGTLSVQSHRGKFF 3102
G+RDYNPIS+++C L N SDG ++G+G+G +I+TN+HLF+ NNG L ++S G+F
Sbjct: 2122 RGLRDYNPISNNICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNGELLIKSRHGEFV 2181
Query: 3101 IPNTTQLKMYPFPGRDLLIIQMPKDFPPFPQKLKFRSPVSGDRVCMIGSNFQDKYXXXXX 2922
I NTTQL + P P RDLL+I++PKD PPFPQKL FR P G+R+CM+GSNFQ K
Sbjct: 2182 IRNTTQLHLLPIPDRDLLLIRLPKDIPPFPQKLGFRQPEKGERICMVGSNFQTKSITSVV 2241
Query: 2921 XXXXXXSQKDESVFYRHWISTKTGHCGLPMVSVKDGYILGIHSLTSKDDASGFLISFPQD 2742
+ S F++HWISTK G CG PMVS KDG ILG+HSL + ++ + +FP D
Sbjct: 2242 SETSTIMPVENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYFAAFPDD 2301
Query: 2741 MEKNYLQNAEQVQWTKKWRLNVDLIDWGTLNLTTNKPDNLFRLSKDLLGLMAEPVEFQAH 2562
+ YL E +W K W+ N I WG+LN+ +P LF++SK + L + V Q
Sbjct: 2302 FAEKYLYTIETHEWVKHWKYNTSGISWGSLNIQAAQPAGLFKVSKLISDLDSTAVYAQTQ 2361
Query: 2561 ENRWLYERLGGNLHAVARTTNQLVTKHVVKGKCLLFATYLETNDEAKQFFQPLMGAYQKS 2382
+NRW+YE+L GNL AVA +QLVTKH VKGKC +F YL+ +DEA+++FQP++G YQKS
Sbjct: 2362 QNRWMYEQLTGNLKAVAHCPSQLVTKHTVKGKCQMFDLYLKLHDEAREYFQPMLGQYQKS 2421
Query: 2381 RLNKEAYIKDLFKYNSPTTIGVLEPDKFERAEALVMRLFERVGFSECEYVTCPDAIFSAL 2202
RLN+EAY KDL KY +P G ++ D FE+ +V+ GF C YVT IF AL
Sbjct: 2422 RLNREAYAKDLLKYATPIEAGNIDCDLFEKTVEIVISDLWGYGFETCNYVTDETDIFEAL 2481
Query: 2201 NMKAAVGALYHGKKKDYFDSFSEADKAQILKDSCYRLYAGKMGVWNGSLKAELRPLEKVQ 2022
NMK+AVGALY GKKKDYF F+ K +ILK SC RL+ GKMGVWNGSLKAELRPLEKV+
Sbjct: 2482 NMKSAVGALYKGKKKDYFAEFTPEMKEEILKQSCERLFLGKMGVWNGSLKAELRPLEKVE 2541
Query: 2021 ANKTRSFTAAPIDTLLGGKVCVDDFNNQFYSLNLKAPWSVGMTKFYGGWNELMTSLPDGW 1842
ANKTR+FTAAP+DTLLGGKVCVDDFNNQFY NL APWSVGMTKFY GWN L+ SLPD W
Sbjct: 2542 ANKTRTFTAAPLDTLLGGKVCVDDFNNQFYDHNLSAPWSVGMTKFYCGWNRLLDSLPDNW 2601
Query: 1841 IYCDADGSQFDSSLTPYLINAVLNLRLHFMEEWDIGEKMLENLYTEIVYTPIATPDGTVI 1662
IYCDADGSQFDSSL+PYLINAVLN+RL FMEEWD+GE ML NLYTEIVYTPI+TPDGT++
Sbjct: 2602 IYCDADGSQFDSSLSPYLINAVLNIRLEFMEEWDVGEVMLRNLYTEIVYTPISTPDGTLV 2661
Query: 1661 KKYKGNNSGQPSTVVDNTIMVILAMYYSGEVYN-PTLSLDDYCKFFVNGDDLLIAVHPNH 1485
KK+KGNNSGQPSTVVDNT+MVILA+ YS + P+ D +FFVNGDDLL++VHP +
Sbjct: 2662 KKFKGNNSGQPSTVVDNTLMVILAVNYSLKKSGIPSELRDSIVRFFVNGDDLLLSVHPKY 2721
Query: 1484 VDFLQDLQNSFQHLGLKYTFTSRYHTREELWFMSHKAIKVDGVYIPKLEEERIVSILEWD 1305
L + ++F+ LGLKYTF SR + +LWFMSH+ K +G++IPKLE ERIVSILEWD
Sbjct: 2722 EYILDTMADNFRELGLKYTFDSRTKEKSDLWFMSHQGHKREGIWIPKLEPERIVSILEWD 2781
Query: 1304 RAVLPEHRLEAICASMIEAWGYPSLLHQIRKFYYWVLEQAPYSVLSSEGKAPYISEVALK 1125
R+ P HRLEAICA+MIE+WGY L H+IRKFY WV+EQAP++ L+ EGKAPYI+E AL+
Sbjct: 2782 RSKEPCHRLEAICAAMIESWGYDKLTHEIRKFYAWVIEQAPFNSLAQEGKAPYIAETALR 2841
Query: 1124 HLYLN-QIEKSELERYMDGLDWSSTQGIEE-VEFQANDTYDAG---------KKTDKPED 978
LYL+ + + +L +Y++ + GIE V QA +T DAG K+ + E
Sbjct: 2842 KLYLDKEPSQEDLTQYLEAIFEDYEDGIEVCVYHQAGETLDAGLTEEQKQAEKEKKEKEK 2901
Query: 977 VEKNHEKENKELTPPPNQEAGPSKG-RDKDVDVGTKGTFQVPRLKSIGSKMTLPRVGGRV 801
EK EK+ K+L + + +G RDK+V+ GT GTF VPRLKS+ SKM +P+ ++
Sbjct: 2902 AEKEREKQ-KQLALKKGKNSSQEEGERDKEVNAGTSGTFSVPRLKSLASKMRVPKYEKKL 2960
Query: 800 IVNLEHLLTYEPEQVDLSNTRATRSQFDSWYNGIKGAYDLNDSSMGVVLNGLMVWCIENG 621
+NL+HL+ Y PEQ DLSNTR+T+ QF++W+ G+ Y+L + M ++LNGLMVWCIENG
Sbjct: 2961 ALNLDHLILYTPEQTDLSNTRSTQKQFNTWFEGVMADYELTEDKMQIILNGLMVWCIENG 3020
Query: 620 TSPNIHGHWTMMDGDEQVEYPLRPVVEMAQPTLRQIMSHFSALAEAYIEKRNATKPYMPR 441
TSPNI+G W MMDGD+QVE+P++P+++ A+PT RQIM+HFS +AEAYIEKRN +PYMPR
Sbjct: 3021 TSPNINGMWVMMDGDDQVEFPIKPLIDHAKPTFRQIMAHFSDVAEAYIEKRNQDRPYMPR 3080
Query: 440 YGLLRNLRDLSLARYAFDFYEVTARTPVRAREAHMQMKAAALRNSDNKMFGLDGNSGDKE 261
YGL RNL D+SLARYAFDFYE+T+RTP+RAREAH+QMKAAALR ++N +FGLDGN G
Sbjct: 3081 YGLQRNLTDMSLARYAFDFYEMTSRTPIRAREAHIQMKAAALRGANNNLFGLDGNVGTTV 3140
Query: 260 EDTERHTANDVNRNMHHLMGVR 195
E+TERHT DVNRNMH+L+GV+
Sbjct: 3141 ENTERHTTEDVNRNMHNLLGVK 3162
>dbj|BAC79393.1| polyprotein [Turnip mosaic virus]
Length = 3164
Score = 2959 bits (7670), Expect = 0.0
Identities = 1515/2972 (50%), Positives = 2016/2972 (67%), Gaps = 42/2972 (1%)
Frame = -2
Query: 8984 KRVVHTPIRYS---VENIIRAIANQNKNCKLDLEIISTKKATRARHTMWRNRLYVKAQTK 8814
K++VH R + ++ ++R++ K ++E I +K+ + T + + Q
Sbjct: 211 KKMVHKTCRMNSQGIDMLMRSLIKIFKAKNANIEYIG-RKSIKIDFTKREQTKFARVQVA 269
Query: 8813 HELGVRHKRDILVCEWGRQVLRLLVSKTAGNRAHDANMFTQGSSGIIIMSHCLSGNVSAS 8634
H LG R +RD+L + + +L + + R + + G SGI+I L S S
Sbjct: 270 HLLGKRAQRDLLTGSEENRFIDILSNYSGSKRVINPGIVCAGWSGIVIRDGALIQRQSRS 329
Query: 8633 RGNLFIVRGRDGEKLYDSQSVVTSHVASRMRHYSA-GERFWKGYGRGFNSH-TPSVGHQC 8460
F++RG KLYD++ +T ++ ++ H+SA G FWKG+ R F ++ + + H C
Sbjct: 330 PSKAFVIRGEHEGKLYDARIKITKTMSHKIVHFSAAGNNFWKGFDRCFLAYRSNNREHTC 389
Query: 8459 RSDLDVEECGYVAAMATQVLFPCGHITCQQCADNFVSCSKNDLKEEYGTRIQGLIDEVQN 8280
S LDV ECG VAA+ +FPCG ITC C + + R+ L + +++
Sbjct: 390 YSGLDVTECGEVAALMCLAMFPCGKITCPDCVTDSELSQGQASEPSMKNRLAQLREIIKS 449
Query: 8279 KHPKFAHVVKFLSLFNDYLRFSNENIRQFSEAKRIIGDRKEAPFQQLAALNDLLIKVGEC 8100
+P+F H V+ L + L +NEN + F+E + + ++A F LN +LIK
Sbjct: 450 SYPRFKHAVQILDRYEQSLSGANENYQDFAEIQSLTDGMEKAAFPHANKLNAILIKGATA 509
Query: 8099 TSEEAALGTANLLELVRFQKNRTDNISGTSLTHFRNKVSSKIHVNLDLMCDNQLDDDGNF 7920
T EE T +LLE+ R+ KNRT+NI SL FRNK+S K H+N LMCDNQLD +GNF
Sbjct: 510 TGEEYEQATKHLLEITRYMKNRTENIEKGSLKSFRNKISQKAHINPTLMCDNQLDKNGNF 569
Query: 7919 KWRQRGFHAKRMFDNFYEVVNPSKGYDSFIVRTNPNGVRKTAIGNLVISTNMATFREQMR 7740
W +RG+HAKR F N++E+++P KGY + R PNG RK AIG L++ TN REQM+
Sbjct: 570 IWGERGYHAKRFFSNYFEIIDPKKGYTQYETRLVPNGSRKLAIGKLIVPTNFEVLREQMK 629
Query: 7739 GEPVEPQALSLACTSKLKGSYVYPCCCVTTDTGKPIESEMLAPTKDHLVIGNTGDSKFVT 7560
GEPVEP +++ C SK +G +V+ CCCVTT++G P+ SE+ PTK HLVIGN+GD K+V
Sbjct: 630 GEPVEPHPITVECVSKSQGDFVHACCCVTTESGDPVLSEIKMPTKHHLVIGNSGDPKYVD 689
Query: 7559 VPKILEDGMYVAKEGYCYVNIFVAMLINVSDVQAKDYTRRVRDYAIPTLGKWPTLINLAT 7380
+P+I E+ MY+AKEGYCY+NIF+AML+NV + QAK++T+ VRD + LGKWPTL+++AT
Sbjct: 690 LPEIEENKMYIAKEGYCYINIFLAMLVNVKESQAKEFTKVVRDKLVGELGKWPTLLDVAT 749
Query: 7379 VCHFLTILYPDIKSAELPRILVDHKTCTMHVVDSFGSLSTGYHILKANTVGQLIKFANDE 7200
C+FL + YPD+ +AELPR+LVDHKT +HVVDS+GSLSTGYHILK NTV QLIKF
Sbjct: 750 ACYFLKVFYPDVANAELPRMLVDHKTKIIHVVDSYGSLSTGYHILKTNTVEQLIKFTRQN 809
Query: 7199 LESDMKLYAVGGL-----HGXXXXXXXXXXXVIMLARGIYRPKELKSILEHDPTLLVYSL 7035
LES +K Y VGG HG ++ G+YRPK+LK + +P L +Y+L
Sbjct: 810 LESSLKHYRVGGTKWEDAHGSSNIDNPQWCIKRLIL-GVYRPKQLKEDMMANPFLPLYAL 868
Query: 7034 LSPCVLIAMYKNRTFELAVSEWLQKDTEVASLCNQLEVVARKISVSKVLAVQQQLIAEQA 6855
LSP V++A Y + + E ++ +++ D+ +A L L+ +A+K+SVS+ + Q Q+I
Sbjct: 869 LSPGVILAFYNSGSLEYLMNHYIKADSNIAVLLVVLKSLAKKVSVSQSVLAQLQVIERSL 928
Query: 6854 SQMIRSVERSQAHSP---SRHFVRLLLARIIENQQMDKELIASGFTQLRLDGDLMREKKF 6684
+++ + R+ P + L +I + + EL + G+T LR + EK +
Sbjct: 929 PELVEA--RANITGPDCAASQACNRFLGMLIHMSEPNNELASGGYTILRDHSITILEKSY 986
Query: 6683 LEALAHSWRDLSWSERCTSIWRSRKHSQSGTGPSKSATSDDLNVTWRERFNSLRGGVAET 6504
L+ L +W +LSWSERC + S K + + DL + E S
Sbjct: 987 LQILDEAWSELSWSERCAIKYYSSKQAIFSQKDLPMQSGVDLGGRYSESVISSYEWSRRR 1046
Query: 6503 IRDGRSKIGATIKRKSNELVGKVTCKLLLTSRLLCPDIFRMVNVLTVMYLLLQIFTGVRG 6324
++ S + + + + GK++ + T L PD+FR +NVL + LL+ I +
Sbjct: 1047 MKKLYSSMCNKTRNSVSWVSGKISSSICGTINYLVPDVFRFINVLVCISLLITIASEANR 1106
Query: 6323 HIQAHQQLKI-----EKQRLEDDLNFDMVMRLYNIFYERYPTNAPSLYEFEQYLQKTNQS 6159
+ A ++ K+ E++++E +L F ++ P+L EF Y+ +
Sbjct: 1107 IVTAQRKFKLDVAETERKKIEWELAF------HHSILTHSANQHPTLDEFVAYINEKAPH 1160
Query: 6158 AYQYYMKVCGPDADDEKVEFQAKGACEIELERTVAFVALIMMMFDAERSDCVYKVLSKLR 5979
+Y + D++ V QAK E ELER +AF+AL++MMFDAERSDCV K+L+KL+
Sbjct: 1161 LSEYI------ELDEKAVVHQAKRQSEQELERIIAFIALVLMMFDAERSDCVTKILNKLK 1214
Query: 5978 GLMAPIGTESVAFQSIDTVKEILGETKMAIDIEIDTENHQMNRLKGT-TFSDWWQNQISQ 5802
GL++ + +V Q+++ +++ L E + +D E+D + + +L TF+ WW +QIS+
Sbjct: 1215 GLVSTV-EPTVYHQALNDIEDDLSERNLFVDFELDNDGETIQQLPTEKTFASWWNHQISR 1273
Query: 5801 GRTIPHYRTEGHFMEFTRANAQTVANSIAHSEHNDLLIMGAVGSGKSTGLPFYLSKKGKV 5622
G TIPHYRTEG FM FTRA A VA IAH D+L+MGAVGSGKSTGLP +LS+KG V
Sbjct: 1274 GFTIPHYRTEGKFMTFTRATATEVAGKIAHESDKDILLMGAVGSGKSTGLPHHLSRKGNV 1333
Query: 5621 LIIEPTKPLAENVHKQLQGNPFMTQATLKMRGCNVFGSAPIHVQTSGYALHYFAHNVAQL 5442
L++EPT+PLAENVHKQL PF TL+MRG VFGSAPI + TSG+AL+YFA+N A++
Sbjct: 1334 LLLEPTRPLAENVHKQLSQAPFHQSTTLRMRGLTVFGSAPISIMTSGFALNYFANNRARI 1393
Query: 5441 AEFKFIIFDECHVHDSAAMAFRCLLSEYDYGGKILKVSATPPGREAVFSTQHAVQVKMEE 5262
EF F+IFDECHVHD+ AMA RCLL E DY GKI+KVSATPPGRE FSTQ+ V + E+
Sbjct: 1394 EEFDFVIFDECHVHDANAMAMRCLLHECDYSGKIIKVSATPPGREVEFSTQYPVTISTED 1453
Query: 5261 NLTFQQFVQMQGTGANGDVIQSGDNILVYVSSYNEVDSLSKLLLDAKHKVTKVDGRTMKM 5082
L+FQ FV QG+G+N DVI GDNILVYV+SYNEVD+LSKLL + KVTKVDGRTMK+
Sbjct: 1454 TLSFQNFVNAQGSGSNCDVISKGDNILVYVASYNEVDTLSKLLAERDFKVTKVDGRTMKV 1513
Query: 5081 GQVEIPTSGTRDKKHFIVATNIIENGVTLDIDVVVDFGMKVVPELDSDNRLIRYTKVSIS 4902
G +EI TSGT KKHFIVATNIIENGVTLDIDVV DFG KV+P LD+DNR++ TK SI+
Sbjct: 1514 GNIEITTSGTPSKKHFIVATNIIENGVTLDIDVVADFGTKVLPYLDTDNRMLSTTKTSIN 1573
Query: 4901 YGERIQRLGRVGRNKEGTALRIGATEKGLSAVPNIVATEAAFYSFAYGLPVMTNGVAVGV 4722
YGERIQRLGRVGR+K G ALRIG TEKGLS VP+ +ATEAA F YGLPV+TN V+ +
Sbjct: 1574 YGERIQRLGRVGRHKPGHALRIGHTEKGLSEVPSCIATEAALKCFTYGLPVITNNVSTSI 1633
Query: 4721 VANCTVPQARTVLHFELPIFYMLHLVRFDGSMHPALHACLKGFKLRDSEIILNKMAIPNS 4542
+ N TV QART+ FE+ FY +VR+DGSMHP +HA LK FKLRDSEI+LN++A+PN
Sbjct: 1634 LGNVTVKQARTMSVFEITPFYTSQVVRYDGSMHPQVHALLKRFKLRDSEIMLNRLAVPNR 1693
Query: 4541 GVKQWLTAGEYSRIGARNSVDEFTRIPFFSKDVPDKIHEQVWEAVVTFKRDAGFGKIQSA 4362
GV WLTA EY+R+GA RIPF +D+P+K+H ++W+ +V FK DAGFG++ SA
Sbjct: 1694 GVNAWLTASEYARLGANVEDRRDVRIPFMCRDIPEKLHLEMWDVIVKFKGDAGFGRLSSA 1753
Query: 4361 SACKVAYTLQTDAASITRTVCIIEELIKNEVKKQEYFQT-ASGIDCGSGFSLVSLTNAIR 4185
SA KVAYTLQTD SI RT+ II+ LI E +KQEYF+T S S FSL S+TNAI+
Sbjct: 1754 SASKVAYTLQTDINSIQRTITIIDTLIAEERRKQEYFKTVTSNCVSSSSFSLQSITNAIK 1813
Query: 4184 SRHMSNHTAENIAILEAAKGQLEEFRNLGIDPTTRT---------VTDFGALECVQFQSA 4032
SR M +HT ENI+ILE A+ QL EFRNL D + T ++++GALE V QS
Sbjct: 1814 SRMMKDHTCENISILEGARSQLLEFRNLNADHSFTTKDDGISRNFMSEYGALEAVHHQST 1873
Query: 4031 DGISKQLGLKGKWNKPLITKDILVAGFTMFGGMWMIYNYLKRAITTNVEFQASGKRQNQK 3852
+ +SK L LKGKWNK LIT+D+LV + GG+WMI LK IT V +A GKRQ QK
Sbjct: 1874 NEMSKFLKLKGKWNKTLITRDVLVICGVLGGGIWMIIQRLKSGITEPVVHEAKGKRQRQK 1933
Query: 3851 RRFQIARNNKHAFEVNPDETDVEHYFGEAYGKKAQGKGRTRGMGAKSRRFYNMYGFDPAE 3672
+F+ AR+NK EV D+ +EH+FG+AY KK + KGRTRG+G K+R+F NMYGFDP +
Sbjct: 1934 LKFRNARDNKMGREVYGDDNTIEHFFGDAYTKKGKNKGRTRGLGHKNRKFINMYGFDPED 1993
Query: 3671 YTFARYVDPLTGYTLDESALTEVKLVQEHFGKIRHELRMREELEPEAIDYHKKIEVYFVK 3492
++ R+VDPLTG TLDE+ T++ LVQ+HFG IR L +ELEPEA+ +HK I+ Y+
Sbjct: 1994 FSAVRFVDPLTGATLDENPFTDITLVQKHFGDIRTNLLEEDELEPEALQFHKTIQAYYTN 2053
Query: 3491 DLAKQVLKIDMDPHNPFEIGRNTESIAGYPERKGELRQMGKPTLMSPTLLP-AQREYEFD 3315
+ + LK+D+ PH P ++ +IAG+PER+ ELRQ GK ++ +P A E
Sbjct: 2054 NKTGKALKVDLTPHIPLKVCDLHATIAGFPEREFELRQTGKAQPINIDEVPKANTEL--- 2110
Query: 3314 EPVVFESKATFYGMRDYNPISSSVCLLANESDGYEREIHGIGYGSMIITNQHLFQHNNGT 3135
PV ES + F G+RDYNPIS+++C L N SDG ++G+G+G +I+TN+HLF+ NNG
Sbjct: 2111 VPVDHESSSMFRGLRDYNPISNNICHLTNISDGASNSLYGVGFGPLILTNRHLFERNNGE 2170
Query: 3134 LSVQSHRGKFFIPNTTQLKMYPFPGRDLLIIQMPKDFPPFPQKLKFRSPVSGDRVCMIGS 2955
L ++S G+F I NTTQL + P P RDLL+I++PKD PPFPQKL FR P G+R+CM+GS
Sbjct: 2171 LLIKSRHGEFVIRNTTQLHLLPIPDRDLLLIRLPKDIPPFPQKLGFRQPEKGERICMVGS 2230
Query: 2954 NFQDKYXXXXXXXXXXXSQKDESVFYRHWISTKTGHCGLPMVSVKDGYILGIHSLTSKDD 2775
NFQ K + S F++HWISTK G CG PMVS KDG ILG+HSL + +
Sbjct: 2231 NFQAKSITSVVSETSTVMPVENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQN 2290
Query: 2774 ASGFLISFPQDMEKNYLQNAEQVQWTKKWRLNVDLIDWGTLNLTTNKPDNLFRLSKDLLG 2595
+ + +FP D + YL E +W K W+ N I WG+LN+ +P LF++SK +
Sbjct: 2291 SINYFAAFPDDFAEKYLYTIEAHEWVKHWKYNTSGISWGSLNIQAAQPAGLFKVSKLISD 2350
Query: 2594 LMAEPVEFQAHENRWLYERLGGNLHAVARTTNQLVTKHVVKGKCLLFATYLETNDEAKQF 2415
L + V Q +NRW+YE+L GNL AVA +QLVTKH VKGKC +F YL+ +DEA+++
Sbjct: 2351 LNSTAVYAQTQQNRWMYEQLNGNLKAVAHCPSQLVTKHTVKGKCQMFDLYLKLHDEAREY 2410
Query: 2414 FQPLMGAYQKSRLNKEAYIKDLFKYNSPTTIGVLEPDKFERAEALVMRLFERVGFSECEY 2235
FQP++G YQKSRLN+EAY KDL KY +P G ++ FE +V+ GF C Y
Sbjct: 2411 FQPMLGQYQKSRLNREAYAKDLLKYATPIEAGNIDCTLFENTVEVVISDLRSYGFETCNY 2470
Query: 2234 VTCPDAIFSALNMKAAVGALYHGKKKDYFDSFSEADKAQILKDSCYRLYAGKMGVWNGSL 2055
VT IF ALNMK+AVGALY GKKKDYF F+ K +ILK SC RL+ GKMGVWNGSL
Sbjct: 2471 VTDESDIFEALNMKSAVGALYKGKKKDYFTGFTPEMKEEILKQSCERLFLGKMGVWNGSL 2530
Query: 2054 KAELRPLEKVQANKTRSFTAAPIDTLLGGKVCVDDFNNQFYSLNLKAPWSVGMTKFYGGW 1875
KAELRPLEKV+ANKTR+FTAAP+DTLLGGKVCVDDFNNQFY NL+APWSVGMTKFY GW
Sbjct: 2531 KAELRPLEKVEANKTRTFTAAPLDTLLGGKVCVDDFNNQFYDHNLRAPWSVGMTKFYCGW 2590
Query: 1874 NELMTSLPDGWIYCDADGSQFDSSLTPYLINAVLNLRLHFMEEWDIGEKMLENLYTEIVY 1695
N L+ SLP+ WIYCDADGSQFDSSL+PYLINAVLN+RL FMEEW+IGE ML NLYTEIVY
Sbjct: 2591 NRLLESLPNDWIYCDADGSQFDSSLSPYLINAVLNIRLEFMEEWNIGEVMLRNLYTEIVY 2650
Query: 1694 TPIATPDGTVIKKYKGNNSGQPSTVVDNTIMVILAMYYSGEVYN-PTLSLDDYCKFFVNG 1518
TPI+TPDGT++KK+KGNNSGQPSTVVDNT+MVILA+ YS + P+ D KFFVNG
Sbjct: 2651 TPISTPDGTLVKKFKGNNSGQPSTVVDNTLMVILAVNYSLKKSGIPSELRDGIIKFFVNG 2710
Query: 1517 DDLLIAVHPNHVDFLQDLQNSFQHLGLKYTFTSRYHTREELWFMSHKAIKVDGVYIPKLE 1338
DDLL++VHP + L + ++F+ LGLKYTF SR + +LWFMSH+ K +G++IPKLE
Sbjct: 2711 DDLLLSVHPKYEYVLDTMADNFRELGLKYTFDSRTKEKGDLWFMSHQGHKREGIWIPKLE 2770
Query: 1337 EERIVSILEWDRAVLPEHRLEAICASMIEAWGYPSLLHQIRKFYYWVLEQAPYSVLSSEG 1158
ERIVSILEWDR+ P HRLEAICA+MIE+WGY L H+IRKFY WV+EQAP+S L+ EG
Sbjct: 2771 PERIVSILEWDRSKEPCHRLEAICAAMIESWGYDRLTHEIRKFYAWVIEQAPFSSLAQEG 2830
Query: 1157 KAPYISEVALKHLYLN-QIEKSELERYMDGLDWSSTQGIEE-VEFQANDTYDAGKKTDKP 984
KAPYI+E AL+ LYL+ + + +L +Y++ + G E V QAN+T DAG ++
Sbjct: 2831 KAPYIAETALRKLYLDKEPSQEDLTQYLEAIFEDYEDGAEVCVYHQANETLDAGATEEQK 2890
Query: 983 EDVEKNHEKENKELTPPPNQEAGPSKG---------RDKDVDVGTKGTFQVPRLKSIGSK 831
+ + EKE E ++ +KG RDK+V+ GT GTF VPRLKS+ SK
Sbjct: 2891 QAERERKEKEKAEKEREKQKQLALNKGKEPAQGDGKRDKEVNAGTSGTFSVPRLKSLASK 2950
Query: 830 MTLPRVGGRVIVNLEHLLTYEPEQVDLSNTRATRSQFDSWYNGIKGAYDLNDSSMGVVLN 651
M +P+ ++ +NL+HL+ Y PEQ DLSNTR+T+ QF++W+ G+ Y+L + M ++LN
Sbjct: 2951 MRVPKYEKKLALNLDHLILYTPEQTDLSNTRSTQKQFNTWFEGVMADYELTEDKMQIILN 3010
Query: 650 GLMVWCIENGTSPNIHGHWTMMDGDEQVEYPLRPVVEMAQPTLRQIMSHFSALAEAYIEK 471
GLMVWCIENGTSPNI+G W MMDGD+QVE+P++P+++ A+PT RQIM+HFS +AEAYIEK
Sbjct: 3011 GLMVWCIENGTSPNINGMWVMMDGDDQVEFPIKPLIDHAKPTFRQIMAHFSDVAEAYIEK 3070
Query: 470 RNATKPYMPRYGLLRNLRDLSLARYAFDFYEVTARTPVRAREAHMQMKAAALRNSDNKMF 291
RN +PYMPRYGL RNL D+SLARYAFDFYE+T+RTP+RAREAH+QMKAAALR ++N +F
Sbjct: 3071 RNQDRPYMPRYGLQRNLTDMSLARYAFDFYEMTSRTPIRAREAHIQMKAAALRGANNNLF 3130
Query: 290 GLDGNSGDKEEDTERHTANDVNRNMHHLMGVR 195
GLDGN G E+TERHT +DVNRNMH+L+GV+
Sbjct: 3131 GLDGNVGTTVENTERHTTDDVNRNMHNLLGVK 3162
>dbj|BAQ56283.1| polyprotein [Turnip mosaic virus]
Length = 3164
Score = 2959 bits (7670), Expect = 0.0
Identities = 1518/3006 (50%), Positives = 2026/3006 (67%), Gaps = 34/3006 (1%)
Frame = -2
Query: 9110 QWEA--GAQSVEAIVEPSAPRAQTVSEYRRPLAIDDKPSLAKRTKRVVHTPIRYSVENII 8937
+WE S+ + SA A+ E R + PS+ KRT ++ +
Sbjct: 173 KWEPKLSGSSIGGGLSASAIEAE---EVRTKWLLHKTPSMKKRTVHRACKMNDQGIDMLT 229
Query: 8936 RAIANQNKNCKLDLEIISTKKATRARHTMWRNRLYVKAQTKHELGVRHKRDILVCEWGRQ 8757
R++ K ++E I KK+ + + + Q H LG R +RD+
Sbjct: 230 RSLIKIFKTKSANIEYIG-KKSIKVDFIRKERTKFARIQVAHLLGKRAQRDLSTGMEENH 288
Query: 8756 VLRLLVSKTAGNRAHDANMFTQGSSGIIIMSHCLSGNVSASRGNLFIVRGRDGEKLYDSQ 8577
+ +L + + + G SGI++ + L+ S S F++RG K+YD++
Sbjct: 289 FIDILSEYSGNKTTINPGVVCAGWSGIVVRNGILTQKRSRSPSEAFVIRGEHEGKMYDAR 348
Query: 8576 SVVTSHVASRMRHYSA-GERFWKGYGRGFNSH-TPSVGHQCRSDLDVEECGYVAAMATQV 8403
VT ++ ++ H+SA G FWKG+ R F ++ + + H C S LDV ECG VAA+
Sbjct: 349 IKVTRTMSHKIVHFSAAGANFWKGFDRCFLAYRSDNREHTCYSGLDVTECGEVAALMCLA 408
Query: 8402 LFPCGHITCQQCADNFVSCSKNDLKEEYGTRIQGLIDEVQNKHPKFAHVVKFLSLFNDYL 8223
+FPCG ITC C + R+ L D +++ +P+F H V+ L + L
Sbjct: 409 MFPCGKITCPDCVTDSELSQGQASGPSMKHRLTQLRDVIKSSYPRFKHAVQILDRYEQSL 468
Query: 8222 RFSNENIRQFSEAKRIIGDRKEAPFQQLAALNDLLIKVGECTSEEAALGTANLLELVRFQ 8043
+NEN + F+E + I ++A F + LN +LIK T EE + T +LLE+ R+
Sbjct: 469 SSTNENYQDFAEIQSISDGVEKAAFPHVNKLNAILIKGATATGEEFSQATKHLLEIARYL 528
Query: 8042 KNRTDNISGTSLTHFRNKVSSKIHVNLDLMCDNQLDDDGNFKWRQRGFHAKRMFDNFYEV 7863
KNRT+NI SL FRNK+S K H+N LMCDNQLD +GNF W +RG+HAKR F N++E+
Sbjct: 529 KNRTENIEKGSLKSFRNKISQKAHINPTLMCDNQLDRNGNFIWGERGYHAKRFFSNYFEI 588
Query: 7862 VNPSKGYDSFIVRTNPNGVRKTAIGNLVISTNMATFREQMRGEPVEPQALSLACTSKLKG 7683
++P KGY + R PNG RK AIG L++ TN REQM+GEPVEP +++ C SKL+G
Sbjct: 589 IDPKKGYTQYETRAVPNGSRKLAIGKLIVPTNFEVLREQMKGEPVEPYPVTVECVSKLQG 648
Query: 7682 SYVYPCCCVTTDTGKPIESEMLAPTKDHLVIGNTGDSKFVTVPKILEDGMYVAKEGYCYV 7503
+V+ CCCVTT++G P+ SE+ PTK HLVIGN+GD K++ +P+I E+ MY+AKEGYCY+
Sbjct: 649 DFVHACCCVTTESGDPVLSEIKMPTKHHLVIGNSGDPKYIDLPEIEENKMYIAKEGYCYI 708
Query: 7502 NIFVAMLINVSDVQAKDYTRRVRDYAIPTLGKWPTLINLATVCHFLTILYPDIKSAELPR 7323
NIF+AML+NV + QAK++T+ VRD + LGKWPTL+++AT C+FL + YPD+ +AELPR
Sbjct: 709 NIFLAMLVNVKESQAKEFTKVVRDKLVGELGKWPTLLDVATACYFLKVFYPDVANAELPR 768
Query: 7322 ILVDHKTCTMHVVDSFGSLSTGYHILKANTVGQLIKFANDELESDMKLYAVGGL-----H 7158
+LVDHKT +HVVDS+GSLSTGYH+LK NTV QLIKF LES +K Y VGG H
Sbjct: 769 MLVDHKTKIIHVVDSYGSLSTGYHVLKTNTVEQLIKFTRCNLESSLKHYRVGGTEWEDTH 828
Query: 7157 GXXXXXXXXXXXVIMLARGIYRPKELKSILEHDPTLLVYSLLSPCVLIAMYKNRTFELAV 6978
G L +G+YRPK+LK + +P L +Y+LLSP V++A Y + + E +
Sbjct: 829 GASNIDNPQWCIK-RLIKGVYRPKQLKEDMLANPFLPLYALLSPGVILAFYNSGSLEYLM 887
Query: 6977 SEWLQKDTEVASLCNQLEVVARKISVSKVLAVQQQLIAEQASQMIRS-VERSQAHSPSRH 6801
+ +++ D+ VA L L+ +ARK+S S+ + Q Q+I +++ + + + +
Sbjct: 888 NHYIRADSSVAVLLVVLQSLARKVSASQSVLAQLQIIERSLPELVEARANITGSDGAASQ 947
Query: 6800 FVRLLLARIIENQQMDKELIASGFTQLRLDGDLMREKKFLEALAHSWRDLSWSERCTSIW 6621
L +I + + EL G+T LR + EK +L+ L +W +LSWSERC +
Sbjct: 948 ACNKFLGMLIHMSEPNNELANGGYTVLRDHSITILEKSYLQILDEAWSELSWSERCAVKY 1007
Query: 6620 RSRKHSQSGTGPSKSATSDDLNVTWRERFNSLRGGVAETIRDGRSKIGATIKRKSNELVG 6441
S K + + DL + E S + +R S + + ++ + G
Sbjct: 1008 YSSKQAIFSQKDLPVQSGVDLGGRYSESVISSYEWSKQRVRRLYSSMCNKTRNSASWVGG 1067
Query: 6440 KVTCKLLLTSRLLCPDIFRMVNVLTVMYLLLQIFTGVRGHIQAHQQLKIEKQRLEDDLNF 6261
KV+ + T L PD+FR +NVL + LL+ I + + A ++LK++ + E
Sbjct: 1068 KVSSSVCRTINYLVPDVFRFINVLICISLLITIASEANRIVTAQRKLKLDVEETERR-KM 1126
Query: 6260 DMVMRLYNIFYERYPTNAPSLYEFEQYLQKTNQSAYQYYMKVCGPDADDEKVEFQAKGAC 6081
+ + ++ + P++ EF Y+ ++ + +++ V QAK
Sbjct: 1127 EWELAFHHAILTQSADQHPTIDEFRAYIADKAPHLSEHI------EPEEKAVVHQAKRQS 1180
Query: 6080 EIELERTVAFVALIMMMFDAERSDCVYKVLSKLRGLMAPIGTESVAFQSIDTVKEILGET 5901
E ELER +AFVAL++MMFDAERSDCV K+L+KL+GL+A + +V Q+++ +++ L E
Sbjct: 1181 EQELERIIAFVALVLMMFDAERSDCVTKILNKLKGLVATV-EPTVYHQTLNDIEDDLSER 1239
Query: 5900 KMAIDIEIDTENHQMNRLKGT-TFSDWWQNQISQGRTIPHYRTEGHFMEFTRANAQTVAN 5724
+ +D E+ ++ + +L TF+ WW +Q+S+G TIPHYRTEG FM FTRA A VA
Sbjct: 1240 NLFVDFELSSDGDMLQQLPAEKTFASWWSHQLSRGFTIPHYRTEGKFMTFTRATATEVAG 1299
Query: 5723 SIAHSEHNDLLIMGAVGSGKSTGLPFYLSKKGKVLIIEPTKPLAENVHKQLQGNPFMTQA 5544
IAH D+L+MGAVGSGKSTGLP++LS+KG VL++EPT+PLAENVHKQL PF
Sbjct: 1300 KIAHESDKDILLMGAVGSGKSTGLPYHLSRKGNVLLLEPTRPLAENVHKQLSQAPFHQNT 1359
Query: 5543 TLKMRGCNVFGSAPIHVQTSGYALHYFAHNVAQLAEFKFIIFDECHVHDSAAMAFRCLLS 5364
TL+MRG FGSAPI V TSG+AL+YFA+N ++ EF F+IFDECHVHD+ AMA RCLL
Sbjct: 1360 TLRMRGLTAFGSAPISVMTSGFALNYFANNRMRIEEFDFVIFDECHVHDANAMAMRCLLH 1419
Query: 5363 EYDYGGKILKVSATPPGREAVFSTQHAVQVKMEENLTFQQFVQMQGTGANGDVIQSGDNI 5184
E DY GKI+KVSATPPGRE FSTQ+ V + E+ L+FQ FV QG+G+N DVI GDNI
Sbjct: 1420 ECDYSGKIIKVSATPPGREVEFSTQYPVSISTEDTLSFQDFVNAQGSGSNCDVISKGDNI 1479
Query: 5183 LVYVSSYNEVDSLSKLLLDAKHKVTKVDGRTMKMGQVEIPTSGTRDKKHFIVATNIIENG 5004
LVYV+SYNEVD+LSKLL++ KVTKVDGRTMK+G +EI TSGT KKHFIVATNIIENG
Sbjct: 1480 LVYVASYNEVDALSKLLIERDFKVTKVDGRTMKVGNIEITTSGTPSKKHFIVATNIIENG 1539
Query: 5003 VTLDIDVVVDFGMKVVPELDSDNRLIRYTKVSISYGERIQRLGRVGRNKEGTALRIGATE 4824
VTLDIDVV DFG KV+P LD+D+R++ TK SI+YGERIQRLGRVGR+K G ALRIG TE
Sbjct: 1540 VTLDIDVVADFGTKVLPYLDTDSRMLSTTKTSINYGERIQRLGRVGRHKPGHALRIGHTE 1599
Query: 4823 KGLSAVPNIVATEAAFYSFAYGLPVMTNGVAVGVVANCTVPQARTVLHFELPIFYMLHLV 4644
KGLS VP+ +ATEAA F YGLPV+TN V+ ++ N TV QART+ FE+ FY +V
Sbjct: 1600 KGLSEVPSCIATEAALKCFTYGLPVITNNVSTSILGNVTVKQARTMSVFEITPFYTSQVV 1659
Query: 4643 RFDGSMHPALHACLKGFKLRDSEIILNKMAIPNSGVKQWLTAGEYSRIGARNSVDEFTRI 4464
R+DGSMHP +HA LK FKLRDSEI+LNK+AIP+ GV WLTA EY+R+GA RI
Sbjct: 1660 RYDGSMHPQVHALLKRFKLRDSEIVLNKLAIPHRGVNAWLTASEYARLGANVEDRRDVRI 1719
Query: 4463 PFFSKDVPDKIHEQVWEAVVTFKRDAGFGKIQSASACKVAYTLQTDAASITRTVCIIEEL 4284
PF +D+P+K+H +W+ +V FK DAGFG++ SASA KVAYTLQTD SI RTV II+ L
Sbjct: 1720 PFMCRDIPEKLHLDMWDVIVKFKGDAGFGRLSSASASKVAYTLQTDVNSIQRTVTIIDTL 1779
Query: 4283 IKNEVKKQEYFQT-ASGIDCGSGFSLVSLTNAIRSRHMSNHTAENIAILEAAKGQLEEFR 4107
I E +KQEYF+T S S FSL S+TNAI+SR M +HT ENI++LE AK QL EFR
Sbjct: 1780 IAEERRKQEYFKTVTSNCVSSSNFSLQSITNAIKSRMMKDHTCENISVLEGAKSQLLEFR 1839
Query: 4106 NLGIDPTTRTVTD---------FGALECVQFQSADGISKQLGLKGKWNKPLITKDILVAG 3954
NL D + T TD +GALE V Q+ +SK L LKGKWNK LIT+D+LV
Sbjct: 1840 NLNADHSFATQTDGISRHFMSEYGALEAVHHQNTSDMSKFLKLKGKWNKTLITRDVLVLC 1899
Query: 3953 FTMFGGMWMIYNYLKRAITTNVEFQASGKRQNQKRRFQIARNNKHAFEVNPDETDVEHYF 3774
+ GG+WM+ +L+ I+ V +A GKRQ QK +F+ AR+NK EV D+ +EH+F
Sbjct: 1900 GVLGGGLWMVIQHLRSKISEPVTHEAKGKRQRQKLKFRNARDNKMGREVYGDDETIEHFF 1959
Query: 3773 GEAYGKKAQGKGRTRGMGAKSRRFYNMYGFDPAEYTFARYVDPLTGYTLDESALTEVKLV 3594
G+AY KK + KGRTRG+G K+R+F NMYGFDP +++ R+VDPLTG TLD++ LT++ LV
Sbjct: 1960 GDAYTKKGKSKGRTRGIGHKNRKFINMYGFDPEDFSAVRFVDPLTGATLDDNPLTDITLV 2019
Query: 3593 QEHFGKIRHELRMREELEPEAIDYHKKIEVYFVKDLAKQVLKIDMDPHNPFEIGRNTESI 3414
QEHFG IR +L +EL+P I +K I+ Y++ + + LK+D+ PH P ++ +I
Sbjct: 2020 QEHFGNIRMDLLGEDELDPNTIRVNKTIQAYYMNNKTGKALKVDLTPHIPLKVCDLHATI 2079
Query: 3413 AGYPERKGELRQMGKPTLMSPTLLP-AQREYEFDEPVVFESKATFYGMRDYNPISSSVCL 3237
AG+PER+ ELRQ GK +S +P A E+ PV ES + F G+RDYNPIS+++C
Sbjct: 2080 AGFPERENELRQTGKAQPISIDEVPRANNEF---VPVDHESNSMFRGLRDYNPISNNICH 2136
Query: 3236 LANESDGYEREIHGIGYGSMIITNQHLFQHNNGTLSVQSHRGKFFIPNTTQLKMYPFPGR 3057
L N SDG ++G+G+G +I+TN+HLF+ NNG L ++S G+F I NTTQL + P P R
Sbjct: 2137 LTNVSDGASNSLYGVGFGPLILTNRHLFERNNGELVIKSRHGEFVIKNTTQLHLLPIPDR 2196
Query: 3056 DLLIIQMPKDFPPFPQKLKFRSPVSGDRVCMIGSNFQDKYXXXXXXXXXXXSQKDESVFY 2877
DLL+I++PKD PPFPQKL FR P G+R+CM+GSNFQ K + S F+
Sbjct: 2197 DLLLIRLPKDVPPFPQKLGFRQPEKGERICMVGSNFQTKSITSIVSETSTIMPVENSQFW 2256
Query: 2876 RHWISTKTGHCGLPMVSVKDGYILGIHSLTSKDDASGFLISFPQDMEKNYLQNAEQVQWT 2697
+HWISTK G CG PMVS KDG ILG+HSL + ++ + +FP D + YL E +W
Sbjct: 2257 KHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYFAAFPDDFAEKYLHTIEAHEWV 2316
Query: 2696 KKWRLNVDLIDWGTLNLTTNKPDNLFRLSKDLLGLMAEPVEFQAHENRWLYERLGGNLHA 2517
K W+ N I WG+LN+ ++P LF++SK + L + V Q +NRW++E+L GNL A
Sbjct: 2317 KHWKYNTSAISWGSLNIQASQPSGLFKVSKLVSDLDSTAVYAQTQQNRWMFEQLTGNLKA 2376
Query: 2516 VARTTNQLVTKHVVKGKCLLFATYLETNDEAKQFFQPLMGAYQKSRLNKEAYIKDLFKYN 2337
+A +QLVTKH VKGKC +F YL+ +DEA+++FQP++G YQKS+LN+EAY KDL KY
Sbjct: 2377 IAHCPSQLVTKHTVKGKCQMFDLYLKLHDEAREYFQPMLGQYQKSKLNREAYAKDLLKYA 2436
Query: 2336 SPTTIGVLEPDKFERAEALVMRLFERVGFSECEYVTCPDAIFSALNMKAAVGALYHGKKK 2157
+P G ++ D FE+ +V+ GF C YVT + IF ALNMK+AVGALY GKKK
Sbjct: 2437 TPIEAGNIDCDLFEKTVEIVISDLRGYGFETCNYVTDENDIFEALNMKSAVGALYKGKKK 2496
Query: 2156 DYFDSFSEADKAQILKDSCYRLYAGKMGVWNGSLKAELRPLEKVQANKTRSFTAAPIDTL 1977
DYF F+ K +ILK SC RL+ GKMGVWNGSLKAELRPLEKV+ANKTR+FTAAP+DTL
Sbjct: 2497 DYFAEFTPEMKEEILKQSCERLFLGKMGVWNGSLKAELRPLEKVEANKTRTFTAAPLDTL 2556
Query: 1976 LGGKVCVDDFNNQFYSLNLKAPWSVGMTKFYGGWNELMTSLPDGWIYCDADGSQFDSSLT 1797
LGGKVCVDDFNNQFY NL+APWSVGMTKFY GW+ L+ SLPDGW+YCDADGSQFDSSL+
Sbjct: 2557 LGGKVCVDDFNNQFYDHNLRAPWSVGMTKFYCGWDRLLESLPDGWVYCDADGSQFDSSLS 2616
Query: 1796 PYLINAVLNLRLHFMEEWDIGEKMLENLYTEIVYTPIATPDGTVIKKYKGNNSGQPSTVV 1617
PYLINAVLN+RL FMEEWD+GE ML NLYTEIVYTPI+TPDGT++KK+KGNNSGQPSTVV
Sbjct: 2617 PYLINAVLNIRLGFMEEWDVGEVMLRNLYTEIVYTPISTPDGTLVKKFKGNNSGQPSTVV 2676
Query: 1616 DNTIMVILAMYYSGEVYN-PTLSLDDYCKFFVNGDDLLIAVHPNHVDFLQDLQNSFQHLG 1440
DNT+MVILA+ YS + P+ D +FFVNGDDLL++VHP + L + ++F+ LG
Sbjct: 2677 DNTLMVILAVNYSLKKSGIPSELRDSIIRFFVNGDDLLLSVHPEYEYILDTMADNFRELG 2736
Query: 1439 LKYTFTSRYHTREELWFMSHKAIKVDGVYIPKLEEERIVSILEWDRAVLPEHRLEAICAS 1260
LKYTF SR + +LWFMSH+ K +G++IPKLE ERIVSILEWDR+ P HRLEAICA+
Sbjct: 2737 LKYTFDSRTREKGDLWFMSHQGHKREGIWIPKLEPERIVSILEWDRSKEPCHRLEAICAA 2796
Query: 1259 MIEAWGYPSLLHQIRKFYYWVLEQAPYSVLSSEGKAPYISEVALKHLYLN-QIEKSELER 1083
MIE+WGY L H+IRKFY W++EQAP+S L+ EGKAPYI+E AL+ LYL+ + + +L
Sbjct: 2797 MIESWGYDKLTHEIRKFYAWMIEQAPFSSLAQEGKAPYIAETALRKLYLDKEPAQEDLTH 2856
Query: 1082 YMDGLDWSSTQGIEE-VEFQANDTYDAG-----KKTDKPEDVEKNHEKE---NKELTPPP 930
Y+ + G E V QA +T DAG K+ +K + + EKE K+L
Sbjct: 2857 YLQAIFEDYEDGAEACVYHQAGETLDAGLTDEQKQAEKEKKEREKAEKERERQKQLALKK 2916
Query: 929 NQEAGPSKG-RDKDVDVGTKGTFQVPRLKSIGSKMTLPRVGGRVIVNLEHLLTYEPEQVD 753
++ +G RDK+V+ GT GTF VPRLKS+ SKM +PR RV +NL+HL+ Y PEQ D
Sbjct: 2917 GKDVAQEEGERDKEVNAGTSGTFSVPRLKSLTSKMRVPRYEKRVALNLDHLILYTPEQTD 2976
Query: 752 LSNTRATRSQFDSWYNGIKGAYDLNDSSMGVVLNGLMVWCIENGTSPNIHGHWTMMDGDE 573
LSNTR+TR+QFD+W+ G+ Y+L + M ++LNGLMVWCIENGTSPNI+G W MMDGD+
Sbjct: 2977 LSNTRSTRTQFDTWFEGVMADYELTEDKMQIILNGLMVWCIENGTSPNINGMWVMMDGDD 3036
Query: 572 QVEYPLRPVVEMAQPTLRQIMSHFSALAEAYIEKRNATKPYMPRYGLLRNLRDLSLARYA 393
QVE+P++P+++ A+PT RQIM+HFS +AEAYIEKRN +PYMPRYGL RNL D+SLARYA
Sbjct: 3037 QVEFPIKPLIDHAKPTFRQIMAHFSDVAEAYIEKRNQDRPYMPRYGLQRNLTDMSLARYA 3096
Query: 392 FDFYEVTARTPVRAREAHMQMKAAALRNSDNKMFGLDGNSGDKEEDTERHTANDVNRNMH 213
FDFYE+T+RTP+RAREAH+QMKAAALR ++N +FGLDGN G E+TERHT DVNRNMH
Sbjct: 3097 FDFYEMTSRTPIRAREAHIQMKAAALRGANNNLFGLDGNVGTTVENTERHTTEDVNRNMH 3156
Query: 212 HLMGVR 195
+L+GV+
Sbjct: 3157 NLLGVK 3162
>dbj|BAM99214.1| polyprotein [Turnip mosaic virus]
Length = 3163
Score = 2959 bits (7670), Expect = 0.0
Identities = 1529/3031 (50%), Positives = 2033/3031 (67%), Gaps = 39/3031 (1%)
Frame = -2
Query: 9170 ARAVARLDLLERETTHKWLT-QWEAGAQSVEAIVEPSAPRAQTVSEYRRPLAIDDKPSLA 8994
+RA+ ER ++ + + +WE + PSA + + E R + PS+
Sbjct: 152 SRAMKHKRARERRSSQQPIVLKWEPKLSEISIGGGPSARKIEA-EEVRTKWPLHKTPSMK 210
Query: 8993 KRTKRVVHTPIRYSVENIIRAIANQNKNCKLDLEIISTKKATRARHTMWRNRLYVKAQTK 8814
K+T V ++ ++R++ K ++E KK+ + + + +
Sbjct: 211 KKTVHKVCRMNDKGIDMLMRSLVKIFKAKGANIEYTG-KKSIKIDFVERERTRFARVRVA 269
Query: 8813 HELGVRHKRDILVCEWGRQVLRLLVSKTAGNRAHDANMFTQGSSGIIIMSHCLSGNVSAS 8634
H LG R +RD+L + +L + RA + + G SG+I+ L+ S S
Sbjct: 270 HLLGKRAQRDLLTGVEENHFIDILSGYSGSKRAINPGVVCAGWSGVIVRDGALTQKQSRS 329
Query: 8633 RGNLFIVRGRDGEKLYDSQSVVTSHVASRMRHYSA-GERFWKGYGRGFNSH-TPSVGHQC 8460
F++RG KLYD++ VT ++ +M H+SA G FWKG+ R F ++ + + H C
Sbjct: 330 PSKAFVIRGEHEGKLYDARIKVTKTMSHKMVHFSAAGANFWKGFDRCFLAYRSNNREHTC 389
Query: 8459 RSDLDVEECGYVAAMATQVLFPCGHITCQQCADNFVSCSKNDLKEEYGTRIQGLIDEVQN 8280
S LDV ECG VAA+ +FPCG ITC C + + R+ L + +++
Sbjct: 390 YSGLDVTECGEVAALMCLAMFPCGKITCPDCVTDSELSQGQASEPSMKHRLTQLREIIKS 449
Query: 8279 KHPKFAHVVKFLSLFNDYLRFSNENIRQFSEAKRIIGDRKEAPFQQLAALNDLLIKVGEC 8100
+P+F H V+ L + L +N N + F+E + + ++A F LN +LIK
Sbjct: 450 SYPRFKHAVQILDRYEQSLNSTNGNYQDFAEIQSVTDGMEKAAFPHANKLNAILIKGATA 509
Query: 8099 TSEEAALGTANLLELVRFQKNRTDNISGTSLTHFRNKVSSKIHVNLDLMCDNQLDDDGNF 7920
T EE T +LLE+ R+ KNRT+NI SL FRNK+S K H+N LMCDNQLD +GNF
Sbjct: 510 TGEEYEQATKHLLEITRYMKNRTENIEKGSLKSFRNKISQKAHINPTLMCDNQLDKNGNF 569
Query: 7919 KWRQRGFHAKRMFDNFYEVVNPSKGYDSFIVRTNPNGVRKTAIGNLVISTNMATFREQMR 7740
W +RG+HAKR F N++E+++P KGY + R P+G RK AIG L++ TN REQMR
Sbjct: 570 IWGERGYHAKRFFSNYFEIIDPKKGYAQYETRVVPDGSRKLAIGKLIVPTNFEVLREQMR 629
Query: 7739 GEPVEPQALSLACTSKLKGSYVYPCCCVTTDTGKPIESEMLAPTKDHLVIGNTGDSKFVT 7560
GEPVEP +++ C SK +G +V+ CCCVTT++G PI SE+ PTK HLVIGN+GD K+V
Sbjct: 630 GEPVEPHPITVECVSKSQGDFVHACCCVTTESGDPILSEIKMPTKHHLVIGNSGDPKYVD 689
Query: 7559 VPKILEDGMYVAKEGYCYVNIFVAMLINVSDVQAKDYTRRVRDYAIPTLGKWPTLINLAT 7380
+P+I E+ MY+AKEGYCY+NIF+AML+NV + QAK++T+ VRD + LGKWPTL+++AT
Sbjct: 690 LPEIEENKMYIAKEGYCYINIFLAMLVNVKESQAKEFTKVVRDKLVGELGKWPTLLDVAT 749
Query: 7379 VCHFLTILYPDIKSAELPRILVDHKTCTMHVVDSFGSLSTGYHILKANTVGQLIKFANDE 7200
C+FL + YPD+ +AELPR+LVDHKT +HVVDS+GSLSTGYHILK NTV QLIKF
Sbjct: 750 ACYFLKVFYPDVANAELPRMLVDHKTKIIHVVDSYGSLSTGYHILKTNTVEQLIKFTRHN 809
Query: 7199 LESDMKLYAVGGL-----HGXXXXXXXXXXXVIMLARGIYRPKELKSILEHDPTLLVYSL 7035
LES +K Y VGG HG L +G+YRPK+LK + +P L +Y+L
Sbjct: 810 LESSLKHYRVGGTKWKDTHGVNNIDNPQWCIR-RLIKGVYRPKQLKEDMLLNPFLPLYAL 868
Query: 7034 LSPCVLIAMYKNRTFELAVSEWLQKDTEVASLCNQLEVVARKISVSKVLAVQQQLIAEQA 6855
LSP V++A Y + + E ++ +++ D+ VA L L+ +ARK+S S+ + Q Q+I
Sbjct: 869 LSPGVILAFYNSGSLEYLMNHYIKADSSVAVLLVVLKSLARKVSASQSVLAQLQVIERSL 928
Query: 6854 SQMIRSVERSQAHSP---SRHFVRLLLARIIENQQMDKELIASGFTQLRLDGDLMREKKF 6684
+++ + R+ P + L +I + + EL G+T LR + EK +
Sbjct: 929 PELVEA--RANIDGPDGAASQACNKFLGMLIHMSEPNNELADGGYTILRDHSITILEKSY 986
Query: 6683 LEALAHSWRDLSWSERCTSIWRSRKHSQSGTGPSKSATSDDLNVTWRERFNSLRGGVAET 6504
L+ L +W +LSW ERC + S K + + DL + E S +
Sbjct: 987 LQILDEAWSELSWLERCAVKYYSSKQAIFSQKDLPVQSGVDLGGRYSESVISSYEWSRQR 1046
Query: 6503 IRDGRSKIGATIKRKSNELVGKVTCKLLLTSRLLCPDIFRMVNVLTVMYLLLQIFTGVRG 6324
++ S + + ++ + GK++ + T L PD+F+ +NVL + LLL I +
Sbjct: 1047 MKTLYSSVCNKTRNSASWVSGKISSSVCRTINYLVPDVFKFINVLVCISLLLTIASEANR 1106
Query: 6323 HIQAHQQLKI-----EKQRLEDDLNFDMVMRLYNIFYERYPTNAPSLYEFEQYLQKTNQS 6159
+ A ++LK+ E++++E +L F + ++ P++ EF Y+ +
Sbjct: 1107 IVTAQRKLKLDVAESERKKIEWELAFHHAILTHSA------KQHPTIDEFIAYISEKAPH 1160
Query: 6158 AYQYYMKVCGPDADDEKVEFQAKGACEIELERTVAFVALIMMMFDAERSDCVYKVLSKLR 5979
+Y +++ V QAK E ELER +AF+AL++MMFDAERSDCV K+L+KL+
Sbjct: 1161 LTEYVKP------EEKAVVHQAKRQSEQELERIIAFIALVLMMFDAERSDCVTKILNKLK 1214
Query: 5978 GLMAPIGTESVAFQSIDTVKEILGETKMAIDIEIDTENHQMNRLKGT-TFSDWWQNQISQ 5802
GL++ + +V Q++D +++ L E + +D E+ + + +L TF+ WW +Q+S+
Sbjct: 1215 GLVSTV-EPTVYHQALDDIEDDLSERNLFVDFELSNDGELIQQLPAEKTFASWWNHQLSR 1273
Query: 5801 GRTIPHYRTEGHFMEFTRANAQTVANSIAHSEHNDLLIMGAVGSGKSTGLPFYLSKKGKV 5622
G TIPHYRTEG FM FTRA A VA IAH D+L+MGAVGSGKSTGLP++LS+KG V
Sbjct: 1274 GYTIPHYRTEGKFMTFTRATATEVAGKIAHESDRDILLMGAVGSGKSTGLPYHLSRKGNV 1333
Query: 5621 LIIEPTKPLAENVHKQLQGNPFMTQATLKMRGCNVFGSAPIHVQTSGYALHYFAHNVAQL 5442
L++EPT+PLAENVHKQL PF TL+MRG FGSAPI V TSG+AL+YFA+N A++
Sbjct: 1334 LLLEPTRPLAENVHKQLSQAPFHQNTTLRMRGLTAFGSAPISVMTSGFALNYFANNRARI 1393
Query: 5441 AEFKFIIFDECHVHDSAAMAFRCLLSEYDYGGKILKVSATPPGREAVFSTQHAVQVKMEE 5262
EF F+IFDECHVHD+ AMA RCLL E DY GKI+KVSATPPGRE FSTQ+ V + E+
Sbjct: 1394 EEFDFVIFDECHVHDANAMAMRCLLHECDYSGKIIKVSATPPGREVEFSTQYPVTISTED 1453
Query: 5261 NLTFQQFVQMQGTGANGDVIQSGDNILVYVSSYNEVDSLSKLLLDAKHKVTKVDGRTMKM 5082
L+FQ FV QG+G+N DVI GDNILVYV+SYNEVD+LSKLL + KVTKVDGRTMK+
Sbjct: 1454 TLSFQNFVSAQGSGSNCDVISKGDNILVYVASYNEVDTLSKLLAERDFKVTKVDGRTMKV 1513
Query: 5081 GQVEIPTSGTRDKKHFIVATNIIENGVTLDIDVVVDFGMKVVPELDSDNRLIRYTKVSIS 4902
G +EI TSGT +KKHFIVATNIIENGVTLDIDVV DFG KV+P LD+DNR++ TK SI+
Sbjct: 1514 GNIEITTSGTPNKKHFIVATNIIENGVTLDIDVVADFGTKVLPYLDTDNRMLSTTKTSIN 1573
Query: 4901 YGERIQRLGRVGRNKEGTALRIGATEKGLSAVPNIVATEAAFYSFAYGLPVMTNGVAVGV 4722
YGERIQRLGRVGR+K G ALRIG TEKGLS VP+ +ATEAA F YGLPV+TN V+ +
Sbjct: 1574 YGERIQRLGRVGRHKPGHALRIGYTEKGLSEVPSCIATEAALKCFTYGLPVITNNVSTSI 1633
Query: 4721 VANCTVPQARTVLHFELPIFYMLHLVRFDGSMHPALHACLKGFKLRDSEIILNKMAIPNS 4542
+ N TV QART+ FE+ FY ++R+DGSMHP +HA LK FKLRDSEI LNKMAIPN
Sbjct: 1634 LGNVTVKQARTMSVFEITPFYTSQVIRYDGSMHPQVHALLKRFKLRDSEITLNKMAIPNR 1693
Query: 4541 GVKQWLTAGEYSRIGARNSVDEFTRIPFFSKDVPDKIHEQVWEAVVTFKRDAGFGKIQSA 4362
GV WLTA EY+R+GA RIPF +D+P+K+H ++W+ +V FK DAGFG++ SA
Sbjct: 1694 GVNAWLTASEYARLGANVEDRRDVRIPFMCRDIPEKLHLEMWDVIVKFKGDAGFGRLSSA 1753
Query: 4361 SACKVAYTLQTDAASITRTVCIIEELIKNEVKKQEYFQT-ASGIDCGSGFSLVSLTNAIR 4185
SA KVAYTLQTD SI RTV II+ LI E +KQEYF+T S S FSL S+TNAI+
Sbjct: 1754 SASKVAYTLQTDVNSIQRTVTIIDTLIAEERRKQEYFKTVTSNCVSSSSFSLQSITNAIK 1813
Query: 4184 SRHMSNHTAENIAILEAAKGQLEEFRNLGIDPTTRTVTD---------FGALECVQFQSA 4032
SR M +HT ENI+ILE AK QL EFRNL D + T TD +GALE V QS
Sbjct: 1814 SRIMKDHTCENISILEGAKSQLLEFRNLNADHSFTTKTDGISRSFMREYGALEAVHHQST 1873
Query: 4031 DGISKQLGLKGKWNKPLITKDILVAGFTMFGGMWMIYNYLKRAITTNVEFQASGKRQNQK 3852
+ +SK L LKGKWNK LIT+D+LV + GG+WMI L+ +T V +A GKRQ QK
Sbjct: 1874 NDMSKFLKLKGKWNKTLITRDVLVICGVLGGGVWMILQSLQSGVTEPVTHEAKGKRQRQK 1933
Query: 3851 RRFQIARNNKHAFEVNPDETDVEHYFGEAYGKKAQGKGRTRGMGAKSRRFYNMYGFDPAE 3672
+F+ AR++K EV D+ +EH+FG+AY KK + KGRTRG+G K+R+F NMYGFDP +
Sbjct: 1934 LKFRNARDSKMGREVYGDDDTIEHFFGDAYTKKGKSKGRTRGIGHKNRKFVNMYGFDPED 1993
Query: 3671 YTFARYVDPLTGYTLDESALTEVKLVQEHFGKIRHELRMREELEPEAIDYHKKIEVYFVK 3492
++ R+VDPLTG TLDES T++ LVQ+HFG IR +L +E+EP+A+ YHK I+ Y+
Sbjct: 1994 FSAVRFVDPLTGATLDESPFTDITLVQKHFGDIRTDLLEEDEIEPQALQYHKTIQAYYTN 2053
Query: 3491 DLAKQVLKIDMDPHNPFEIGRNTESIAGYPERKGELRQMGKPTLMSPTLLP-AQREYEFD 3315
+ + LK+D+ PH P ++ +IAG+PER+ ELRQ GK +S +P A E
Sbjct: 2054 NKTGKALKVDLTPHIPLKVCDLHATIAGFPEREFELRQTGKAQPISIDEVPKANTEL--- 2110
Query: 3314 EPVVFESKATFYGMRDYNPISSSVCLLANESDGYEREIHGIGYGSMIITNQHLFQHNNGT 3135
PV ES + F G+RDYNPIS+++C L N SDG ++G+G+G +I+TN+HLF+ NNG
Sbjct: 2111 VPVDHESSSMFRGLRDYNPISNNICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNGE 2170
Query: 3134 LSVQSHRGKFFIPNTTQLKMYPFPGRDLLIIQMPKDFPPFPQKLKFRSPVSGDRVCMIGS 2955
L ++S G+F I NTTQL + P P RDLL+I++PKD PPFPQKL FR P G+R+CM+GS
Sbjct: 2171 LLIKSRHGEFVIRNTTQLHLLPIPDRDLLLIRLPKDIPPFPQKLGFRQPEKGERICMVGS 2230
Query: 2954 NFQDKYXXXXXXXXXXXSQKDESVFYRHWISTKTGHCGLPMVSVKDGYILGIHSLTSKDD 2775
NFQ K + S F++HWISTK G CG PMVS KDG ILG+HSL + +
Sbjct: 2231 NFQTKSITSVVSETSTVMPVENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQN 2290
Query: 2774 ASGFLISFPQDMEKNYLQNAEQVQWTKKWRLNVDLIDWGTLNLTTNKPDNLFRLSKDLLG 2595
+ + +FP D + YL E +W K W+ N I WG+LN+ +P LF++SK +
Sbjct: 2291 SINYFAAFPDDFAEKYLYTIETHEWVKHWKYNTSGISWGSLNIQAAQPAGLFKVSKLISD 2350
Query: 2594 LMAEPVEFQAHENRWLYERLGGNLHAVARTTNQLVTKHVVKGKCLLFATYLETNDEAKQF 2415
L V Q +NRW+YE+L GNL AVA +QLVTKH VKGKC +F YL+ +DEA+++
Sbjct: 2351 LDGTAVYAQTQQNRWMYEQLTGNLKAVAHCPSQLVTKHTVKGKCQMFDLYLKLHDEAREY 2410
Query: 2414 FQPLMGAYQKSRLNKEAYIKDLFKYNSPTTIGVLEPDKFERAEALVMRLFERVGFSECEY 2235
FQP++G YQKS+LN+EAY KDL KY +P G ++ D FE+ +V+ GF C Y
Sbjct: 2411 FQPMLGQYQKSKLNREAYAKDLLKYATPIEAGNIDCDLFEKTVEIVISDLWGYGFETCNY 2470
Query: 2234 VTCPDAIFSALNMKAAVGALYHGKKKDYFDSFSEADKAQILKDSCYRLYAGKMGVWNGSL 2055
VT IF ALNMK+AVGALY GKKKDYF F+ K +ILK SC RL+ GKMGVWNGSL
Sbjct: 2471 VTDETDIFEALNMKSAVGALYKGKKKDYFAEFTPEMKEEILKQSCERLFLGKMGVWNGSL 2530
Query: 2054 KAELRPLEKVQANKTRSFTAAPIDTLLGGKVCVDDFNNQFYSLNLKAPWSVGMTKFYGGW 1875
KAELRPLEKV+ANKTR+FTAAP+DTLLGGKVCVDDFNNQFY NL APWSVGMTKFY GW
Sbjct: 2531 KAELRPLEKVEANKTRTFTAAPLDTLLGGKVCVDDFNNQFYDHNLSAPWSVGMTKFYCGW 2590
Query: 1874 NELMTSLPDGWIYCDADGSQFDSSLTPYLINAVLNLRLHFMEEWDIGEKMLENLYTEIVY 1695
+ L+ SLPD WIYCDADGSQFDSSL+PYLINAVLN+RL FME+WD+GE ML NLYTEIVY
Sbjct: 2591 DRLLESLPDDWIYCDADGSQFDSSLSPYLINAVLNIRLEFMEDWDVGEVMLRNLYTEIVY 2650
Query: 1694 TPIATPDGTVIKKYKGNNSGQPSTVVDNTIMVILAMYYSGEVYN-PTLSLDDYCKFFVNG 1518
TPI+TPDGT++KK+KGNNSGQPSTVVDNT+MVILA+ YS + P+ D +FFVNG
Sbjct: 2651 TPISTPDGTLVKKFKGNNSGQPSTVVDNTLMVILAVNYSLKKSGIPSELRDGIVRFFVNG 2710
Query: 1517 DDLLIAVHPNHVDFLQDLQNSFQHLGLKYTFTSRYHTREELWFMSHKAIKVDGVYIPKLE 1338
DDLL++VHP + L + ++F+ LGLKYTF SR + +LWFMSH+ K +G++IPKLE
Sbjct: 2711 DDLLLSVHPKYEYILDTMADNFRELGLKYTFDSRTREKGDLWFMSHQGHKREGIWIPKLE 2770
Query: 1337 EERIVSILEWDRAVLPEHRLEAICASMIEAWGYPSLLHQIRKFYYWVLEQAPYSVLSSEG 1158
ERIVSILEWDR+ P HRLEAICA+MIE+WGY L H+IRKFY WV+EQAP++ L+ EG
Sbjct: 2771 PERIVSILEWDRSKEPCHRLEAICAAMIESWGYDRLTHEIRKFYAWVIEQAPFNSLAQEG 2830
Query: 1157 KAPYISEVALKHLYLN-QIEKSELERYMDGLDWSSTQGIEE-VEFQANDTYDAGKKTDKP 984
KAPYI+E AL+ LYL+ + + +L RY++ + +G E V QAN+T DAG ++
Sbjct: 2831 KAPYIAETALRKLYLDKEPPQEDLTRYLEAIFEDYEEGSEVCVYHQANETLDAGLTEEQK 2890
Query: 983 EDVEKNHEKENKELTPPPNQEAGPSKG--------RDKDVDVGTKGTFQVPRLKSIGSKM 828
+ ++ E+E E ++ KG RDK+V+ GT GTF VPRLKS+ SKM
Sbjct: 2891 QAEKERKEREKAEKERKRQKQLALKKGKNSQEEGERDKEVNAGTSGTFSVPRLKSLTSKM 2950
Query: 827 TLPRVGGRVIVNLEHLLTYEPEQVDLSNTRATRSQFDSWYNGIKGAYDLNDSSMGVVLNG 648
+P+ RV +NL+HL+ Y PEQ DLSNTR+T+ QF++W+ G+ Y+L + M ++LNG
Sbjct: 2951 RVPKYEKRVALNLDHLILYTPEQTDLSNTRSTQKQFNTWFEGVMADYELTEDKMQIILNG 3010
Query: 647 LMVWCIENGTSPNIHGHWTMMDGDEQVEYPLRPVVEMAQPTLRQIMSHFSALAEAYIEKR 468
LMVWCIENGTSPNI+G W MMDGD+QVE P++P+++ A+PT RQIM+HFS +AEAYIEKR
Sbjct: 3011 LMVWCIENGTSPNINGMWVMMDGDDQVELPIKPLIDHAKPTFRQIMAHFSDVAEAYIEKR 3070
Query: 467 NATKPYMPRYGLLRNLRDLSLARYAFDFYEVTARTPVRAREAHMQMKAAALRNSDNKMFG 288
N +PYMPRYGL RNL D+SLARYAFDFYE+T+RTP+RAREAH+QMKAAALR ++N +FG
Sbjct: 3071 NQDRPYMPRYGLQRNLTDMSLARYAFDFYEMTSRTPIRAREAHIQMKAAALRGANNNLFG 3130
Query: 287 LDGNSGDKEEDTERHTANDVNRNMHHLMGVR 195
LDGN G E+TERHT DVNRNMH+L+GV+
Sbjct: 3131 LDGNVGTTVENTERHTTEDVNRNMHNLLGVQ 3161
>dbj|BAF31167.1| polyprotein [Turnip mosaic virus]
Length = 3164
Score = 2959 bits (7670), Expect = 0.0
Identities = 1526/3033 (50%), Positives = 2038/3033 (67%), Gaps = 41/3033 (1%)
Frame = -2
Query: 9170 ARAVARLDLLERETTHKWLT-QWEAGAQSVEAIVEPSAPRAQTVSEYRRPLAIDDKPSLA 8994
+RA+ + ER + K + +WE + PSA + E R + PS+
Sbjct: 152 SRAMKQKRARERRNSQKPIVLKWEPKLSEISIGGGPSASELEA-EEARTKWPLHKTPSMK 210
Query: 8993 KRTKRVVHTPIRYSVENIIRAIANQNKNCKLDLEIISTKKATRARHTMWRNRLYVKAQTK 8814
K+T V V+ ++R++ K ++E I +K+ + + + Q
Sbjct: 211 KKTVHKVRRMNSQGVDMLMRSLIKIFKAKSANIEYIG-RKSIKIDFVKKEQAKFARVQVA 269
Query: 8813 HELGVRHKRDILVCEWGRQVLRLLVSKTAGNRAHDANMFTQGSSGIIIMSHCLSGNVSAS 8634
H LG R +RD+ + + +L S + R + + G SGII+ + L+ S S
Sbjct: 270 HLLGKRAQRDLSTGVEENRFIDILSSYSGDKRVINPGVVCAGWSGIIVRNGVLTQKQSRS 329
Query: 8633 RGNLFIVRGRDGEKLYDSQSVVTSHVASRMRHYSA-GERFWKGYGRGFNSH-TPSVGHQC 8460
F++RG KLYD++ +T ++ ++ H+SA G FWKG+ R F ++ + + H C
Sbjct: 330 PSRAFVIRGEHEGKLYDARIKITKMMSHKIVHFSAAGANFWKGFDRCFLAYRSDNREHTC 389
Query: 8459 RSDLDVEECGYVAAMATQVLFPCGHITCQQCADNFVSCSKNDLKEEYGTRIQGLIDEVQN 8280
+ LDV ECG VAA+ +FPCG ITC C ++ + R+ L + +++
Sbjct: 390 YTGLDVTECGEVAALMCLAMFPCGKITCPDCVNDSELSQGQASEPSIKNRLAQLREVIKS 449
Query: 8279 KHPKFAHVVKFLSLFNDYLRFSNENIRQFSEAKRIIGDRKEAPFQQLAALNDLLIKVGEC 8100
+P+F H V+ L + L +NEN + F+E + + ++A F LN +LIK
Sbjct: 450 SYPRFKHAVQILDRYEQSLNSANENYQDFAEIQSLTDGMEKAAFPHANKLNAILIKGATA 509
Query: 8099 TSEEAALGTANLLELVRFQKNRTDNISGTSLTHFRNKVSSKIHVNLDLMCDNQLDDDGNF 7920
T EE T +LLE+ R+ KNRT+NI SL FRNK+S K H+N LMCDNQLD +GNF
Sbjct: 510 TGEEYEQATRHLLEITRYMKNRTENIEKGSLKSFRNKISQKAHINPTLMCDNQLDKNGNF 569
Query: 7919 KWRQRGFHAKRMFDNFYEVVNPSKGYDSFIVRTNPNGVRKTAIGNLVISTNMATFREQMR 7740
W +RG+HAKR F N++E+++P KGY + R P+G RK AIG L++ TN REQMR
Sbjct: 570 IWGERGYHAKRFFSNYFEIIDPKKGYAQYETRIVPDGSRKLAIGKLIVPTNFEVLREQMR 629
Query: 7739 GEPVEPQALSLACTSKLKGSYVYPCCCVTTDTGKPIESEMLAPTKDHLVIGNTGDSKFVT 7560
GEPVEP +++ C SK +G +V+ CCCVTT++G P+ SE+ PTK HLVIGN+GD K+V
Sbjct: 630 GEPVEPHPITVECVSKSQGDFVHACCCVTTESGDPVLSEIKMPTKHHLVIGNSGDPKYVD 689
Query: 7559 VPKILEDGMYVAKEGYCYVNIFVAMLINVSDVQAKDYTRRVRDYAIPTLGKWPTLINLAT 7380
+P+I E+ MY+AKEGYCY+NIF+AML+NV + QAK++T+ VRD + LGKWP+L+++AT
Sbjct: 690 LPEIEENKMYIAKEGYCYINIFLAMLVNVKESQAKEFTKVVRDKLVGELGKWPSLLDVAT 749
Query: 7379 VCHFLTILYPDIKSAELPRILVDHKTCTMHVVDSFGSLSTGYHILKANTVGQLIKFANDE 7200
C+FL + YPD+ +AELPR+LVDHKT +HVVDS+GSLSTGYHILK NTV QLIKF
Sbjct: 750 ACYFLKVFYPDVANAELPRMLVDHKTKIIHVVDSYGSLSTGYHILKTNTVEQLIKFTRHN 809
Query: 7199 LESDMKLYAVGG-----LHGXXXXXXXXXXXVIMLARGIYRPKELKSILEHDPTLLVYSL 7035
LES +K Y VGG +HG L +G+YRPK+LK + +P L +Y+L
Sbjct: 810 LESSLKHYRVGGTKWEDVHGTKNIDDPQWCIK-RLVKGVYRPKQLKEDMLANPFLPLYAL 868
Query: 7034 LSPCVLIAMYKNRTFELAVSEWLQKDTEVASLCNQLEVVARKISVSKVLAVQQQLIAEQA 6855
LSP V++A Y + + E ++ +++ D+ VA L L+ +A+K+S S+ + Q Q I
Sbjct: 869 LSPGVILAFYNSGSLEYLMNHYIRADSNVAVLLVVLKSLAKKVSTSQSVLAQLQTIERSL 928
Query: 6854 SQMIRSVERSQAHSP---SRHFVRLLLARIIENQQMDKELIASGFTQLRLDGDLMREKKF 6684
+++ + R+ P + L ++ + + EL+ G+T LR + EK +
Sbjct: 929 PEIVEA--RANITGPEGAASQACNRFLGMLLHRSEPNDELLNGGYTTLRDHSVAILEKNY 986
Query: 6683 LEALAHSWRDLSWSERCTSIWRSRKHSQSGTGPSKSATSDDLNVTWRERFNSLRGGVAET 6504
L+ L +W +LSW ERC + S K + + DL + E S +
Sbjct: 987 LQILDEAWSELSWLERCAIRYYSSKQAIFSQKDLPMQSDVDLGGRYSESVISSYEWSKQR 1046
Query: 6503 IRDGRSKIGATIKRKSNELVGKVTCKLLLTSRLLCPDIFRMVNVLTVMYLLLQIFTGVRG 6324
++ S + + + + KV+ + T L PDIFR +NVL + LLL I +
Sbjct: 1047 MKKLYSGLSNKTRNSMSCVSNKVSSSICKTLNYLVPDIFRFINVLICLSLLLTIASEANR 1106
Query: 6323 HIQAHQQLKI-----EKQRLEDDLNFDMVMRLYNIFYERYPTNAPSLYEFEQYLQKTNQS 6159
+ + ++LK+ E++++E +L F ++ P+L EF Y+ +
Sbjct: 1107 IVTSQRKLKLDIVEAERKKIEWELAF------HHSILTHSANQHPTLDEFIAYINEKAPH 1160
Query: 6158 AYQYYMKVCGPDADDEKVEFQAKGACEIELERTVAFVALIMMMFDAERSDCVYKVLSKLR 5979
+Y + +++ V QAK E ELER +AF+AL++MMFDAERSDCV K+L+KL+
Sbjct: 1161 LSEYI------EPEEKAVGHQAKRQSEQELERIIAFIALVLMMFDAERSDCVTKILNKLK 1214
Query: 5978 GLMAPIGTESVAFQSIDTVKEILGETKMAIDIEIDTENHQMNRLKGT-TFSDWWQNQISQ 5802
GL++ + +V Q+++ +++ L E + +D E+ + + +L TF+ WW +Q+S+
Sbjct: 1215 GLVSTV-EPTVYHQALNDIEDDLSERNLFVDFELSNDGELIQQLPAEKTFASWWNHQLSR 1273
Query: 5801 GRTIPHYRTEGHFMEFTRANAQTVANSIAHSEHNDLLIMGAVGSGKSTGLPFYLSKKGKV 5622
G TIPHYRTEG FM FTRA A +A IAH D+L+MGAVGSGKSTGLP++LS+KG V
Sbjct: 1274 GYTIPHYRTEGKFMTFTRATATEIAGRIAHESDKDILLMGAVGSGKSTGLPYHLSRKGNV 1333
Query: 5621 LIIEPTKPLAENVHKQLQGNPFMTQATLKMRGCNVFGSAPIHVQTSGYALHYFAHNVAQL 5442
L++EPT+PLAENVHKQL PF TL+MRG FGSAPI V TSG+AL+YFA+N A++
Sbjct: 1334 LLLEPTRPLAENVHKQLSQAPFHQNTTLRMRGLTAFGSAPISVMTSGFALNYFANNRARI 1393
Query: 5441 AEFKFIIFDECHVHDSAAMAFRCLLSEYDYGGKILKVSATPPGREAVFSTQHAVQVKMEE 5262
EF F+IFDECHVHD++AMA RCLL + DY GKI+KVSATPPGRE FSTQ+ V + E+
Sbjct: 1394 EEFDFVIFDECHVHDASAMAMRCLLHDCDYSGKIIKVSATPPGREVEFSTQYPVTISTED 1453
Query: 5261 NLTFQQFVQMQGTGANGDVIQSGDNILVYVSSYNEVDSLSKLLLDAKHKVTKVDGRTMKM 5082
L+FQ FV QG+G+N DVI GDNILVYV+SYNEVD+LSKLL + KVTKVDGRTMK+
Sbjct: 1454 TLSFQNFVNAQGSGSNCDVISKGDNILVYVASYNEVDTLSKLLTEKDFKVTKVDGRTMKV 1513
Query: 5081 GQVEIPTSGTRDKKHFIVATNIIENGVTLDIDVVVDFGMKVVPELDSDNRLIRYTKVSIS 4902
G +EI TSGT KKHFIVATNIIENGVTLDIDVV DFG KV+P LD+DNR++ TK SI+
Sbjct: 1514 GNIEITTSGTPSKKHFIVATNIIENGVTLDIDVVADFGTKVLPYLDTDNRMLSTTKTSIN 1573
Query: 4901 YGERIQRLGRVGRNKEGTALRIGATEKGLSAVPNIVATEAAFYSFAYGLPVMTNGVAVGV 4722
YGERIQRLGRVGR+K G ALRIG TEKGLS VP+ +ATEAA F YGLPV+TN V+ +
Sbjct: 1574 YGERIQRLGRVGRHKPGHALRIGHTEKGLSEVPSCIATEAALKCFTYGLPVITNNVSTSI 1633
Query: 4721 VANCTVPQARTVLHFELPIFYMLHLVRFDGSMHPALHACLKGFKLRDSEIILNKMAIPNS 4542
+ N TV QART+ FE+ FY +VR+DGSMHP +HA LK FKLRDSEI+LNK+AIPN
Sbjct: 1634 LGNVTVKQARTMSVFEITPFYTSQVVRYDGSMHPQVHALLKRFKLRDSEIVLNKLAIPNR 1693
Query: 4541 GVKQWLTAGEYSRIGARNSVDEFTRIPFFSKDVPDKIHEQVWEAVVTFKRDAGFGKIQSA 4362
GV WLTA EY+R+GA RIPF +D+P+K+H ++W+ + FK DAGFG++ SA
Sbjct: 1694 GVNAWLTASEYARLGANVEDRRDVRIPFMCRDIPEKLHLEMWDVITKFKGDAGFGRLSSA 1753
Query: 4361 SACKVAYTLQTDAASITRTVCIIEELIKNEVKKQEYFQT-ASGIDCGSGFSLVSLTNAIR 4185
SA KVAYTLQTD SI RTV II+ LI E +KQEYF+T S S FSL S+TNAI+
Sbjct: 1754 SASKVAYTLQTDVNSIQRTVTIIDTLIAEERRKQEYFKTVTSNCVSSSSFSLQSITNAIK 1813
Query: 4184 SRHMSNHTAENIAILEAAKGQLEEFRNLGIDPTTRTVTD---------FGALECVQFQSA 4032
SR M +HT ENI+ILE AK QL EFRNL D + T TD +GALE V QS
Sbjct: 1814 SRIMKDHTCENISILEGAKSQLLEFRNLNADHSFVTKTDGISRSFMSEYGALEAVHHQST 1873
Query: 4031 DGISKQLGLKGKWNKPLITKDILVAGFTMFGGMWMIYNYLKRAITTNVEFQASGKRQNQK 3852
+ +SK L LKGKWNK LIT+D+LV + GG+WMI L+ IT V +A GKRQ QK
Sbjct: 1874 NDMSKFLKLKGKWNKTLITRDVLVICGVLGGGIWMILQRLQSGITEPVIHEAKGKRQRQK 1933
Query: 3851 RRFQIARNNKHAFEVNPDETDVEHYFGEAYGKKAQGKGRTRGMGAKSRRFYNMYGFDPAE 3672
+F+ AR+ K EV D+ +EHYFG+AY KK + KGRTRG+G K+R+F NMYGFDP +
Sbjct: 1934 LKFRNARDTKMGREVYGDDNTIEHYFGDAYTKKGKSKGRTRGLGHKNRKFINMYGFDPED 1993
Query: 3671 YTFARYVDPLTGYTLDESALTEVKLVQEHFGKIRHELRMREELEPEAIDYHKKIEVYFVK 3492
++ R+VDPLTG TLDES T++ LVQ+HFG IR +L +E+EP+A+ HK I+ Y++
Sbjct: 1994 FSAVRFVDPLTGATLDESPFTDITLVQKHFGDIRTDLLEEDEIEPQALQSHKTIQAYYMN 2053
Query: 3491 DLAKQVLKIDMDPHNPFEIGRNTESIAGYPERKGELRQMGKPTLMSPTLLP-AQREYEFD 3315
+ + LK+D+ PH P ++ +IAG+PER+ ELRQ GK +S + +P A E
Sbjct: 2054 NKTGKALKVDLTPHIPLKVCDLHATIAGFPEREFELRQTGKAQPISMSEVPKANAEL--- 2110
Query: 3314 EPVVFESKATFYGMRDYNPISSSVCLLANESDGYEREIHGIGYGSMIITNQHLFQHNNGT 3135
PV ES + F G+RDYNPIS+++C L N SDG ++G+G+G +I+TN+HLF+ NNG
Sbjct: 2111 VPVDHESSSMFRGLRDYNPISNNICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNGE 2170
Query: 3134 LSVQSHRGKFFIPNTTQLKMYPFPGRDLLIIQMPKDFPPFPQKLKFRSPVSGDRVCMIGS 2955
L ++S G+F I NTTQL + P P RDLL+I++PKD PPFPQKL FR P G+R+CM+GS
Sbjct: 2171 LLIKSRHGEFVIRNTTQLHLLPIPDRDLLLIRLPKDIPPFPQKLGFRQPEKGERICMVGS 2230
Query: 2954 NFQDKYXXXXXXXXXXXSQKDESVFYRHWISTKTGHCGLPMVSVKDGYILGIHSLTSKDD 2775
NFQ K + S F++HWISTK G CG PMVS KDG ILG+HSL + +
Sbjct: 2231 NFQTKSITSVISETSTVMPVENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQN 2290
Query: 2774 ASGFLISFPQDMEKNYLQNAEQVQWTKKWRLNVDLIDWGTLNLTTNKPDNLFRLSKDLLG 2595
+ + +FP D + YL E +W K W+ N I WG+LN+ +P LF++SK +
Sbjct: 2291 SINYFAAFPDDFAEKYLHTIEAHEWVKHWKYNTSGISWGSLNIQAAQPAGLFKVSKLISD 2350
Query: 2594 LMAEPVEFQAHENRWLYERLGGNLHAVARTTNQLVTKHVVKGKCLLFATYLETNDEAKQF 2415
L + V Q +NRW+YE+L GNL A+A +QLVTKH VKGKC +F YL+ +DEA+++
Sbjct: 2351 LDSTAVYAQTQQNRWMYEQLTGNLKAIAHCPSQLVTKHTVKGKCQMFDLYLKLHDEAREY 2410
Query: 2414 FQPLMGAYQKSRLNKEAYIKDLFKYNSPTTIGVLEPDKFERAEALVMRLFERVGFSECEY 2235
FQP++G YQKSRLN+EAY KDL KY +P G ++ D FE+ +V+ GF C Y
Sbjct: 2411 FQPMLGQYQKSRLNREAYAKDLLKYATPIEAGNIDCDLFEKTVDIVISDLWGYGFETCNY 2470
Query: 2234 VTCPDAIFSALNMKAAVGALYHGKKKDYFDSFSEADKAQILKDSCYRLYAGKMGVWNGSL 2055
VT IF ALNMK+AVGALY GKKKDYF F+ K +IL+ SC RL+ GKMGVWNGSL
Sbjct: 2471 VTDETDIFEALNMKSAVGALYKGKKKDYFAEFTPEMKEEILRQSCERLFLGKMGVWNGSL 2530
Query: 2054 KAELRPLEKVQANKTRSFTAAPIDTLLGGKVCVDDFNNQFYSLNLKAPWSVGMTKFYGGW 1875
KAELRPLEKV+ANKTR+FTAAP+DTLLGGKVCVDDFNNQFY NL APWSVGMTKFY GW
Sbjct: 2531 KAELRPLEKVEANKTRTFTAAPLDTLLGGKVCVDDFNNQFYDHNLSAPWSVGMTKFYCGW 2590
Query: 1874 NELMTSLPDGWIYCDADGSQFDSSLTPYLINAVLNLRLHFMEEWDIGEKMLENLYTEIVY 1695
+ L+ SLPDGW+YCDADGSQFDSSL+PYLINAVLN+RL FMEEWD+GE ML NLYTEIVY
Sbjct: 2591 DRLLESLPDGWVYCDADGSQFDSSLSPYLINAVLNIRLEFMEEWDVGEIMLRNLYTEIVY 2650
Query: 1694 TPIATPDGTVIKKYKGNNSGQPSTVVDNTIMVILAMYYSGEVYN-PTLSLDDYCKFFVNG 1518
TPI+TPDGT++KK+KGNNSGQPSTVVDNT+MVILA+ YS + P+ D +FFVNG
Sbjct: 2651 TPISTPDGTLVKKFKGNNSGQPSTVVDNTLMVILAVNYSLKKSGIPSELRDSIVRFFVNG 2710
Query: 1517 DDLLIAVHPNHVDFLQDLQNSFQHLGLKYTFTSRYHTREELWFMSHKAIKVDGVYIPKLE 1338
DDLL++VHP + L + ++F+ LGLKYTF SR + +LWFMSH+ K +G++IPKLE
Sbjct: 2711 DDLLLSVHPKYEYILDTMADNFRELGLKYTFDSRSKEKGDLWFMSHQGHKREGIWIPKLE 2770
Query: 1337 EERIVSILEWDRAVLPEHRLEAICASMIEAWGYPSLLHQIRKFYYWVLEQAPYSVLSSEG 1158
ERIVSILEWDR+ P HRLEAICA+MIE+WGY L H+IRKFY WV+EQAP++ L+ EG
Sbjct: 2771 PERIVSILEWDRSKEPCHRLEAICAAMIESWGYDKLTHEIRKFYAWVIEQAPFNSLAQEG 2830
Query: 1157 KAPYISEVALKHLYLN-QIEKSELERYMDGLDWSSTQGIEE-VEFQANDTYDAG------ 1002
KAPYI+E AL+ LYL+ + + +L +Y++ + G E V QA +T DAG
Sbjct: 2831 KAPYIAETALRKLYLDKEPSQEDLTQYLNAIFEDYEDGTEVCVYHQAGETLDAGLTEEQK 2890
Query: 1001 ---KKTDKPEDVEKNHEKENKELTPPPNQEAGPSKG-RDKDVDVGTKGTFQVPRLKSIGS 834
K+ E EK EK+ K+L + + +G RDK+V+ GT GTF VPRLKS+ S
Sbjct: 2891 QAEKERKDREKAEKEREKQ-KQLALKKGKNSSQEEGERDKEVNAGTSGTFSVPRLKSLAS 2949
Query: 833 KMTLPRVGGRVIVNLEHLLTYEPEQVDLSNTRATRSQFDSWYNGIKGAYDLNDSSMGVVL 654
KM +P+ R+ +NL+HL+ Y PEQ DLSNTR+T+ QF++W+ G+ Y+L + M ++L
Sbjct: 2950 KMRVPKYEKRLALNLDHLILYTPEQTDLSNTRSTQKQFNTWFEGVMADYELTEDKMQIIL 3009
Query: 653 NGLMVWCIENGTSPNIHGHWTMMDGDEQVEYPLRPVVEMAQPTLRQIMSHFSALAEAYIE 474
NGLMVWCIENGTSPNI+G W MMDGD+QVE+P++P+++ A+PT RQIM+HFS +AEAYIE
Sbjct: 3010 NGLMVWCIENGTSPNINGMWVMMDGDDQVEFPIKPLIDHAKPTFRQIMAHFSDVAEAYIE 3069
Query: 473 KRNATKPYMPRYGLLRNLRDLSLARYAFDFYEVTARTPVRAREAHMQMKAAALRNSDNKM 294
KRN +PYMPRYGL RNL D+SLARYAFDFYE+T+RTP+RAREAH+QMKAAALR ++N +
Sbjct: 3070 KRNQDRPYMPRYGLQRNLTDMSLARYAFDFYEMTSRTPIRAREAHIQMKAAALRGANNNL 3129
Query: 293 FGLDGNSGDKEEDTERHTANDVNRNMHHLMGVR 195
FGLDGN G E+TERHT DVNRNMH+L+GV+
Sbjct: 3130 FGLDGNVGTTVENTERHTTEDVNRNMHNLLGVK 3162
>gb|AJT58567.1| polyprotein [Turnip mosaic virus]
Length = 3164
Score = 2958 bits (7669), Expect = 0.0
Identities = 1516/2971 (51%), Positives = 2013/2971 (67%), Gaps = 41/2971 (1%)
Frame = -2
Query: 8984 KRVVHTPIRYS---VENIIRAIANQNKNCKLDLEIISTKKATRARHTMWRNRLYVKAQTK 8814
KR+VH + S V+ +IR++ K ++E I KK +A + + Q
Sbjct: 211 KRMVHKTCKMSDQGVDMLIRSLIKIFKAKSANIEYIG-KKLIKADFIRKERMKFARIQVA 269
Query: 8813 HELGVRHKRDILVCEWGRQVLRLLVSKTAGNRAHDANMFTQGSSGIIIMSHCLSGNVSAS 8634
H LG R +RD+L + +L + + + G SG+I+ + L+ S S
Sbjct: 270 HLLGKRAQRDLLAGVEENHFIDILSEYSGSKTVINPGVVCAGWSGVIVRNEILTQERSRS 329
Query: 8633 RGNLFIVRGRDGEKLYDSQSVVTSHVASRMRHYSA-GERFWKGYGRGFNSHTPSVG-HQC 8460
N F++RG KLYD++ +T ++ ++ H+SA G FWKG+ R F ++ S H C
Sbjct: 330 PSNAFVIRGEHEGKLYDARIKITKTMSHKIVHFSAAGANFWKGFDRCFLAYRSSDREHTC 389
Query: 8459 RSDLDVEECGYVAAMATQVLFPCGHITCQQCADNFVSCSKNDLKEEYGTRIQGLIDEVQN 8280
+ LDV ECG VAA+ +FPCG ITC C + +I L + +++
Sbjct: 390 YTGLDVTECGEVAALMCLAMFPCGKITCPDCVTDSEMSQGQASAPNMRHKIVQLREVIKS 449
Query: 8279 KHPKFAHVVKFLSLFNDYLRFSNENIRQFSEAKRIIGDRKEAPFQQLAALNDLLIKVGEC 8100
+P+F H V+ L + L N N + F+E + + ++A F LN +LIK
Sbjct: 450 SYPRFKHAVQILDRYEQSLHGENTNYQDFAEIQSLTDGMEKAAFPHANKLNAILIKGATA 509
Query: 8099 TSEEAALGTANLLELVRFQKNRTDNISGTSLTHFRNKVSSKIHVNLDLMCDNQLDDDGNF 7920
T EE T +LLE+ R+ KNRT+NI SL FRNK+S K H+N LMCDNQLD +GNF
Sbjct: 510 TGEEYGQATKHLLEITRYMKNRTENIEKGSLKSFRNKISQKAHINPTLMCDNQLDKNGNF 569
Query: 7919 KWRQRGFHAKRMFDNFYEVVNPSKGYDSFIVRTNPNGVRKTAIGNLVISTNMATFREQMR 7740
W +RG+HAKR F N++E+++P KGY + R PNG RK AIG L++ TN REQM+
Sbjct: 570 IWGERGYHAKRFFSNYFEIIDPKKGYTQYETRIVPNGSRKLAIGKLIVPTNFEVLREQMK 629
Query: 7739 GEPVEPQALSLACTSKLKGSYVYPCCCVTTDTGKPIESEMLAPTKDHLVIGNTGDSKFVT 7560
GEPVEP +++ C SK +G +V+ CCCVTT++G+P+ SE+ PTK HLVIGN+GD K+V
Sbjct: 630 GEPVEPYPITVECVSKSQGDFVHACCCVTTESGEPVSSEIKMPTKHHLVIGNSGDPKYVD 689
Query: 7559 VPKILEDGMYVAKEGYCYVNIFVAMLINVSDVQAKDYTRRVRDYAIPTLGKWPTLINLAT 7380
+P+I E+ MY+AKEGYCY+NIF+AML+NV + QAK++T+ VRD + LGKWPTL+++AT
Sbjct: 690 LPEIEENKMYIAKEGYCYINIFLAMLVNVKESQAKEFTKVVRDKLVGELGKWPTLLDVAT 749
Query: 7379 VCHFLTILYPDIKSAELPRILVDHKTCTMHVVDSFGSLSTGYHILKANTVGQLIKFANDE 7200
C+FL + YPD+ +AELPR+LVDHKT +HVVDS+GSLSTGYHILK NTV QLIKF
Sbjct: 750 ACYFLKVFYPDVANAELPRMLVDHKTKIIHVVDSYGSLSTGYHILKTNTVEQLIKFTRHN 809
Query: 7199 LESDMKLYAVGGL-----HGXXXXXXXXXXXVIMLARGIYRPKELKSILEHDPTLLVYSL 7035
LES +K Y VGG HG L +G+YRPK+LK + +P L +Y+L
Sbjct: 810 LESSLKHYRVGGTKWEDAHGTNNIDNPQWCIK-RLIKGVYRPKQLKEDMLTNPFLPLYAL 868
Query: 7034 LSPCVLIAMYKNRTFELAVSEWLQKDTEVASLCNQLEVVARKISVSKVLAVQQQLIAEQA 6855
LSP V++A Y + + E ++ +++ D+ VA L L+ +ARK+S S+ + Q Q+I
Sbjct: 869 LSPGVILAFYNSGSLEYLMNHYIRADSSVAVLLVVLKSLARKVSASQSVLAQLQIIERSL 928
Query: 6854 SQMIRS-VERSQAHSPSRHFVRLLLARIIENQQMDKELIASGFTQLRLDGDLMREKKFLE 6678
+++ + + + + L +I + + EL G+T LR + EK +L+
Sbjct: 929 PELVEARANITGSDGAASQACNKFLGMLIHMSEPNNELADGGYTILRDHSITILEKSYLQ 988
Query: 6677 ALAHSWRDLSWSERCTSIWRSRKHSQSGTGPSKSATSDDLNVTWRERFNSLRGGVAETIR 6498
L +W +LSWSERC + S K + + DL + E S + ++
Sbjct: 989 ILDEAWSELSWSERCAVKYYSSKQAIFSQKDLPVQSGVDLGGRYSESVISSYEWSKQRVK 1048
Query: 6497 DGRSKIGATIKRKSNELVGKVTCKLLLTSRLLCPDIFRMVNVLTVMYLLLQIFTGVRGHI 6318
S + + + + GKV+ + T L PD+FR +NVL + LL+ I + +
Sbjct: 1049 ILYSNMCNKTRNSVSWVGGKVSSSVCRTINYLVPDVFRFINVLICISLLITIASEANRIV 1108
Query: 6317 QAHQQLKI-----EKQRLEDDLNFDMVMRLYNIFYERYPTNAPSLYEFEQYLQKTNQSAY 6153
A ++LK+ E++++E +L F + N + P++ EF Y+
Sbjct: 1109 TAQRRLKLDVEETERRKMEWELAFHHAILTQNA------SQHPTIDEFRAYIADKAPHLR 1162
Query: 6152 QYYMKVCGPDADDEKVEFQAKGACEIELERTVAFVALIMMMFDAERSDCVYKVLSKLRGL 5973
++ + +++ V QAK E ELER +AFVAL++MMFDAERSDCV K+L+KL+GL
Sbjct: 1163 EHI------EPEEKVVVHQAKRQSEQELERIIAFVALVLMMFDAERSDCVTKILNKLKGL 1216
Query: 5972 MAPIGTESVAFQSIDTVKEILGETKMAIDIEIDTENHQMNRLKGT-TFSDWWQNQISQGR 5796
+A + +V Q+++ +++ L E + +D E+ ++ + +L TF+ WW +Q+S+G
Sbjct: 1217 VATV-EPTVYHQTLNDIEDDLSERNLFVDFELSSDGDMLQQLPAEKTFASWWSHQLSRGF 1275
Query: 5795 TIPHYRTEGHFMEFTRANAQTVANSIAHSEHNDLLIMGAVGSGKSTGLPFYLSKKGKVLI 5616
TIPHYRTEG FM FTRA A VA IAH D+L+MGAVGSGKSTGLP++LS+KG VL+
Sbjct: 1276 TIPHYRTEGKFMTFTRATATEVAGRIAHESDKDILLMGAVGSGKSTGLPYHLSRKGNVLL 1335
Query: 5615 IEPTKPLAENVHKQLQGNPFMTQATLKMRGCNVFGSAPIHVQTSGYALHYFAHNVAQLAE 5436
+EPT+PLAENVHKQL PF TL+MRG FGSAPI V TSG+AL+YFA+N ++ E
Sbjct: 1336 LEPTRPLAENVHKQLSQAPFHQNTTLRMRGLTAFGSAPISVMTSGFALNYFANNRMRIEE 1395
Query: 5435 FKFIIFDECHVHDSAAMAFRCLLSEYDYGGKILKVSATPPGREAVFSTQHAVQVKMEENL 5256
F F+IFDECHVHD+ AMA RCLL E DY GKI+KVSATPPGRE FSTQ+ V + E+ L
Sbjct: 1396 FDFVIFDECHVHDANAMAMRCLLHECDYSGKIIKVSATPPGREVEFSTQYPVSISTEDTL 1455
Query: 5255 TFQQFVQMQGTGANGDVIQSGDNILVYVSSYNEVDSLSKLLLDAKHKVTKVDGRTMKMGQ 5076
+FQ FV QG+G+N DVI GDNILVYV+SYNEVD+LSKLL++ KVTKVDGRTMK+G
Sbjct: 1456 SFQDFVNAQGSGSNCDVISKGDNILVYVASYNEVDTLSKLLIERDFKVTKVDGRTMKVGN 1515
Query: 5075 VEIPTSGTRDKKHFIVATNIIENGVTLDIDVVVDFGMKVVPELDSDNRLIRYTKVSISYG 4896
+EI TSGT KKHFIVATNIIENGVTLDIDVV DFG KV+P LD+D+R++ TK SI+YG
Sbjct: 1516 IEITTSGTPSKKHFIVATNIIENGVTLDIDVVADFGTKVLPYLDTDSRMLSTTKTSINYG 1575
Query: 4895 ERIQRLGRVGRNKEGTALRIGATEKGLSAVPNIVATEAAFYSFAYGLPVMTNGVAVGVVA 4716
ERIQRLGRVGR+K G ALRIG TEKGLS VP+ +ATEAA F YGLPV+TN V+ ++
Sbjct: 1576 ERIQRLGRVGRHKPGHALRIGHTEKGLSEVPSCIATEAALKCFTYGLPVITNNVSTSILG 1635
Query: 4715 NCTVPQARTVLHFELPIFYMLHLVRFDGSMHPALHACLKGFKLRDSEIILNKMAIPNSGV 4536
N TV QART+ FE+ FY +VR+DGSMHP +HA LK FKLRDSEI+LNK+AIP+ GV
Sbjct: 1636 NVTVKQARTMSVFEITPFYTSQVVRYDGSMHPQVHALLKRFKLRDSEIVLNKLAIPHRGV 1695
Query: 4535 KQWLTAGEYSRIGARNSVDEFTRIPFFSKDVPDKIHEQVWEAVVTFKRDAGFGKIQSASA 4356
WLTA EY+R+GA RIPF +D+P+K+H +W+ +V FK DAGFG++ SASA
Sbjct: 1696 SAWLTASEYARLGANVEDRRDVRIPFMCRDIPEKLHLDMWDVIVKFKGDAGFGRLSSASA 1755
Query: 4355 CKVAYTLQTDAASITRTVCIIEELIKNEVKKQEYFQT-ASGIDCGSGFSLVSLTNAIRSR 4179
KVAYTLQTD SI RTV II+ LI E +KQEYF+T S S FSL S+TNAI+SR
Sbjct: 1756 SKVAYTLQTDVNSIQRTVTIIDTLIAEERRKQEYFKTVTSNCVSSSNFSLQSITNAIKSR 1815
Query: 4178 HMSNHTAENIAILEAAKGQLEEFRNLGIDPTTRTVTD---------FGALECVQFQSADG 4026
M +HT ENI++LE AK QL EFRNL D + T TD +GALE V Q+
Sbjct: 1816 MMKDHTCENISVLEGAKSQLLEFRNLNADHSFATKTDGISRHFMSEYGALEAVHHQNTSD 1875
Query: 4025 ISKQLGLKGKWNKPLITKDILVAGFTMFGGMWMIYNYLKRAITTNVEFQASGKRQNQKRR 3846
+SK L LKGKWNK LIT+D+LV + GG+WM+ +L+ ++ V +A GKRQ QK +
Sbjct: 1876 MSKFLKLKGKWNKTLITRDVLVLCGVLGGGLWMVIQHLRSKMSEPVTHEAKGKRQRQKLK 1935
Query: 3845 FQIARNNKHAFEVNPDETDVEHYFGEAYGKKAQGKGRTRGMGAKSRRFYNMYGFDPAEYT 3666
F+ AR+NK EV D+ +EH+FG+AY KK + KGRTRG+G K+R+F NMYGFDP +++
Sbjct: 1936 FRNARDNKMGREVYGDDDTIEHFFGDAYTKKGKSKGRTRGIGHKNRKFINMYGFDPEDFS 1995
Query: 3665 FARYVDPLTGYTLDESALTEVKLVQEHFGKIRHELRMREELEPEAIDYHKKIEVYFVKDL 3486
R+VDPLTG TLD+S T++ LVQEHFG IR +L +ELEP+ I +K I+ Y++ +
Sbjct: 1996 AVRFVDPLTGATLDDSPFTDITLVQEHFGNIRMDLLGEDELEPDQIRMNKTIQAYYMNNK 2055
Query: 3485 AKQVLKIDMDPHNPFEIGRNTESIAGYPERKGELRQMGKPTLMSPTLLP-AQREYEFDEP 3309
+ LK+D+ PH P ++ +IAG+PER+ ELRQ GK ++ +P A E+ P
Sbjct: 2056 TGKALKVDLTPHIPLKVCDLHATIAGFPERENELRQTGKAQPINIDEVPRANNEF---VP 2112
Query: 3308 VVFESKATFYGMRDYNPISSSVCLLANESDGYEREIHGIGYGSMIITNQHLFQHNNGTLS 3129
V ES + F G+RDYNPIS+++C L N SDG ++G+G+G +I+TN+HLF+ NNG L
Sbjct: 2113 VDHESNSMFRGLRDYNPISNNICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNGELV 2172
Query: 3128 VQSHRGKFFIPNTTQLKMYPFPGRDLLIIQMPKDFPPFPQKLKFRSPVSGDRVCMIGSNF 2949
++S G+F I NTTQL + P P RDLL+I++PKD PPFPQKL FR P G+R+CM+GSNF
Sbjct: 2173 IKSRHGEFVIKNTTQLHLLPIPDRDLLLIRLPKDVPPFPQKLSFRQPEKGERICMVGSNF 2232
Query: 2948 QDKYXXXXXXXXXXXSQKDESVFYRHWISTKTGHCGLPMVSVKDGYILGIHSLTSKDDAS 2769
Q K + S F++HWISTK G CG PMVS KDG ILG+HSL + ++
Sbjct: 2233 QTKSITSVVSETSTIMPVENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSI 2292
Query: 2768 GFLISFPQDMEKNYLQNAEQVQWTKKWRLNVDLIDWGTLNLTTNKPDNLFRLSKDLLGLM 2589
+ +FP D + YL E +W K W+ N I WG+LN+ ++P LF++SK + L
Sbjct: 2293 NYFAAFPDDFAEKYLHTIEAHEWVKHWKYNTSAISWGSLNIQASQPSGLFKVSKLISDLD 2352
Query: 2588 AEPVEFQAHENRWLYERLGGNLHAVARTTNQLVTKHVVKGKCLLFATYLETNDEAKQFFQ 2409
+ V Q +NRW++E+L GNL AVA +QLVTKH VKGKC +F YL+ +DEA+++FQ
Sbjct: 2353 STAVYAQTQQNRWMFEQLTGNLKAVAHCPSQLVTKHTVKGKCQMFDLYLKLHDEAREYFQ 2412
Query: 2408 PLMGAYQKSRLNKEAYIKDLFKYNSPTTIGVLEPDKFERAEALVMRLFERVGFSECEYVT 2229
P++G YQKS+LN+EAY KDL KY +P G ++ D FE+ +VM GF C YVT
Sbjct: 2413 PMLGQYQKSKLNREAYAKDLLKYATPIEAGNIDCDLFEKTVEIVMSDLRGYGFETCNYVT 2472
Query: 2228 CPDAIFSALNMKAAVGALYHGKKKDYFDSFSEADKAQILKDSCYRLYAGKMGVWNGSLKA 2049
+ IF ALNMK+AVGALY GKKKDYF F+ K +ILK SC RL+ GKMGVWNGSLKA
Sbjct: 2473 DENDIFEALNMKSAVGALYKGKKKDYFAEFTPEMKEEILKQSCKRLFLGKMGVWNGSLKA 2532
Query: 2048 ELRPLEKVQANKTRSFTAAPIDTLLGGKVCVDDFNNQFYSLNLKAPWSVGMTKFYGGWNE 1869
ELRPLEKV+ANKTR+FTAAP+DTLLGGKVCVDDFNNQFY NL+APWSVGMTKFY GW+
Sbjct: 2533 ELRPLEKVEANKTRTFTAAPLDTLLGGKVCVDDFNNQFYDHNLRAPWSVGMTKFYCGWDR 2592
Query: 1868 LMTSLPDGWIYCDADGSQFDSSLTPYLINAVLNLRLHFMEEWDIGEKMLENLYTEIVYTP 1689
L+ SLPDGW+YCDADGSQFDSSL+PYLINAVLN+RL FMEEWD+GE ML NLYTEIVYTP
Sbjct: 2593 LLESLPDGWVYCDADGSQFDSSLSPYLINAVLNIRLGFMEEWDVGEVMLRNLYTEIVYTP 2652
Query: 1688 IATPDGTVIKKYKGNNSGQPSTVVDNTIMVILAMYYSGEVYN-PTLSLDDYCKFFVNGDD 1512
I+TPDGT++KK+KGNNSGQPSTVVDNT+MVILA+ YS + P+ D +FFVNGDD
Sbjct: 2653 ISTPDGTLVKKFKGNNSGQPSTVVDNTLMVILAVNYSLKKSGIPSELRDSIIRFFVNGDD 2712
Query: 1511 LLIAVHPNHVDFLQDLQNSFQHLGLKYTFTSRYHTREELWFMSHKAIKVDGVYIPKLEEE 1332
LL++VHP + L + ++F+ LGLKYTF SR + +LWFMSH+ K +G++IPKLE E
Sbjct: 2713 LLLSVHPEYEYILNTMADNFRELGLKYTFDSRTREKGDLWFMSHQGHKREGIWIPKLEPE 2772
Query: 1331 RIVSILEWDRAVLPEHRLEAICASMIEAWGYPSLLHQIRKFYYWVLEQAPYSVLSSEGKA 1152
RIVSILEWDR+ P HRLEAICA+MIE+WGY L H+IRKFY W++EQAP+S L+ EGKA
Sbjct: 2773 RIVSILEWDRSKEPCHRLEAICAAMIESWGYDKLTHEIRKFYAWMIEQAPFSSLAQEGKA 2832
Query: 1151 PYISEVALKHLYLN-QIEKSELERYMDGLDWSSTQGIEE-VEFQANDTYDAG-------- 1002
PYI+E AL+ LYL+ + + +L Y+ + E V QA +T DAG
Sbjct: 2833 PYIAETALRKLYLDKEPAQEDLTHYLQAIFEDYEDDAEACVYHQAGETLDAGLTEEQKQA 2892
Query: 1001 -KKTDKPEDVEKNHEKENKELTPPPNQEAGPSKG-RDKDVDVGTKGTFQVPRLKSIGSKM 828
K+ + E EK E++ K+L ++ +G RDK+V+ GT GTF VPRLKS+ SKM
Sbjct: 2893 EKERKEREKAEKERERQ-KQLALKKGKDVAQGEGERDKEVNAGTSGTFSVPRLKSLTSKM 2951
Query: 827 TLPRVGGRVIVNLEHLLTYEPEQVDLSNTRATRSQFDSWYNGIKGAYDLNDSSMGVVLNG 648
+PR RV +NL+HL+ Y PEQ DLSNTR+TR QFD+W+ G+ Y+L + M ++LNG
Sbjct: 2952 RVPRYEKRVALNLDHLILYTPEQTDLSNTRSTRKQFDTWFEGVMADYELTEDKMQIILNG 3011
Query: 647 LMVWCIENGTSPNIHGHWTMMDGDEQVEYPLRPVVEMAQPTLRQIMSHFSALAEAYIEKR 468
LMVWCIENGTSPNI+G W MMDGD+QVE+P++P+++ A+PT RQIM+HFS +AEAYIEKR
Sbjct: 3012 LMVWCIENGTSPNINGMWVMMDGDDQVEFPIKPLIDHAKPTFRQIMAHFSDVAEAYIEKR 3071
Query: 467 NATKPYMPRYGLLRNLRDLSLARYAFDFYEVTARTPVRAREAHMQMKAAALRNSDNKMFG 288
N +PYMPRYGL RNL D+SLARYAFDFYE+T+RTP+RAREAH+QMKAAALR ++N +FG
Sbjct: 3072 NQDRPYMPRYGLQRNLTDMSLARYAFDFYEMTSRTPIRAREAHIQMKAAALRGANNNLFG 3131
Query: 287 LDGNSGDKEEDTERHTANDVNRNMHHLMGVR 195
LDGN G E+TERHT DVNRNMH+L+GV+
Sbjct: 3132 LDGNVGTTVENTERHTTEDVNRNMHNLLGVK 3162
>dbj|BAQ56288.1| polyprotein [Turnip mosaic virus]
Length = 3164
Score = 2958 bits (7669), Expect = 0.0
Identities = 1516/2971 (51%), Positives = 2013/2971 (67%), Gaps = 41/2971 (1%)
Frame = -2
Query: 8984 KRVVHTPIRYS---VENIIRAIANQNKNCKLDLEIISTKKATRARHTMWRNRLYVKAQTK 8814
KR+VH + S V+ +IR++ K ++E I KK +A + + Q
Sbjct: 211 KRMVHKTCKMSDQGVDMLIRSLIKIFKAKSANIEYIG-KKLIKADFIRKERMKFARIQVA 269
Query: 8813 HELGVRHKRDILVCEWGRQVLRLLVSKTAGNRAHDANMFTQGSSGIIIMSHCLSGNVSAS 8634
H LG R +RD+L + +L + + + G SG+I+ + L+ S S
Sbjct: 270 HLLGKRAQRDLLAGVEENHFIDILSEYSGSKTVINPGVVCAGWSGVIVRNEILTQERSRS 329
Query: 8633 RGNLFIVRGRDGEKLYDSQSVVTSHVASRMRHYSA-GERFWKGYGRGFNSHTPSVG-HQC 8460
N F++RG KLYD++ +T ++ ++ H+SA G FWKG+ R F ++ S H C
Sbjct: 330 PSNAFVIRGEHEGKLYDARIKITKTMSHKIVHFSAAGANFWKGFDRCFLAYRSSDREHTC 389
Query: 8459 RSDLDVEECGYVAAMATQVLFPCGHITCQQCADNFVSCSKNDLKEEYGTRIQGLIDEVQN 8280
+ LDV ECG VAA+ +FPCG ITC C + +I L + +++
Sbjct: 390 YTGLDVTECGEVAALMCLAMFPCGKITCPDCVTDSEMSQGQASAPNMRHKIVQLREVIKS 449
Query: 8279 KHPKFAHVVKFLSLFNDYLRFSNENIRQFSEAKRIIGDRKEAPFQQLAALNDLLIKVGEC 8100
+P+F H V+ L + L N N + F+E + + ++A F LN +LIK
Sbjct: 450 SYPRFKHAVQILDRYEQSLHGENTNYQDFAEIQSLTDGMEKAAFPHANKLNAILIKGATA 509
Query: 8099 TSEEAALGTANLLELVRFQKNRTDNISGTSLTHFRNKVSSKIHVNLDLMCDNQLDDDGNF 7920
T EE T +LLE+ R+ KNRT+NI SL FRNK+S K H+N LMCDNQLD +GNF
Sbjct: 510 TGEEYGQATKHLLEITRYMKNRTENIEKGSLKSFRNKISQKAHINPTLMCDNQLDKNGNF 569
Query: 7919 KWRQRGFHAKRMFDNFYEVVNPSKGYDSFIVRTNPNGVRKTAIGNLVISTNMATFREQMR 7740
W +RG+HAKR F N++E+++P KGY + R PNG RK AIG L++ TN REQM+
Sbjct: 570 IWGERGYHAKRFFSNYFEIIDPKKGYTQYETRIVPNGSRKLAIGKLIVPTNFEVLREQMK 629
Query: 7739 GEPVEPQALSLACTSKLKGSYVYPCCCVTTDTGKPIESEMLAPTKDHLVIGNTGDSKFVT 7560
GEPVEP +++ C SK +G +V+ CCCVTT++G+P+ SE+ PTK HLVIGN+GD K+V
Sbjct: 630 GEPVEPYPITVECVSKSQGDFVHACCCVTTESGEPVSSEIKMPTKHHLVIGNSGDPKYVD 689
Query: 7559 VPKILEDGMYVAKEGYCYVNIFVAMLINVSDVQAKDYTRRVRDYAIPTLGKWPTLINLAT 7380
+P+I E+ MY+AKEGYCY+NIF+AML+NV + QAK++T+ VRD + LGKWPTL+++AT
Sbjct: 690 LPEIEENKMYIAKEGYCYINIFLAMLVNVKESQAKEFTKVVRDKLVGELGKWPTLLDVAT 749
Query: 7379 VCHFLTILYPDIKSAELPRILVDHKTCTMHVVDSFGSLSTGYHILKANTVGQLIKFANDE 7200
C+FL + YPD+ +AELPR+LVDHKT +HVVDS+GSLSTGYHILK NTV QLIKF
Sbjct: 750 ACYFLKVFYPDVANAELPRMLVDHKTKIIHVVDSYGSLSTGYHILKTNTVEQLIKFTRHN 809
Query: 7199 LESDMKLYAVGGL-----HGXXXXXXXXXXXVIMLARGIYRPKELKSILEHDPTLLVYSL 7035
LES +K Y VGG HG L +G+YRPK+LK + +P L +Y+L
Sbjct: 810 LESSLKHYRVGGTKWEDAHGTNNIDNPQWCIK-RLIKGVYRPKQLKEDMLTNPFLPLYAL 868
Query: 7034 LSPCVLIAMYKNRTFELAVSEWLQKDTEVASLCNQLEVVARKISVSKVLAVQQQLIAEQA 6855
LSP V++A Y + + E ++ +++ D+ VA L L+ +ARK+S S+ + Q Q+I
Sbjct: 869 LSPGVILAFYNSGSLEYLMNHYIRADSSVAVLLVVLKSLARKVSASQSVLAQLQIIERSL 928
Query: 6854 SQMIRS-VERSQAHSPSRHFVRLLLARIIENQQMDKELIASGFTQLRLDGDLMREKKFLE 6678
+++ + + + + L +I + + EL G+T LR + EK +L+
Sbjct: 929 PELVEARANITGSDGAASQACNKFLGMLIHMSEPNNELADGGYTILRDHSITILEKSYLQ 988
Query: 6677 ALAHSWRDLSWSERCTSIWRSRKHSQSGTGPSKSATSDDLNVTWRERFNSLRGGVAETIR 6498
L +W +LSWSERC + S K + + DL + E S + ++
Sbjct: 989 ILDEAWSELSWSERCAVKYYSSKQAIFSQKDLPVQSGVDLGGRYSESVISSYEWSKQRVK 1048
Query: 6497 DGRSKIGATIKRKSNELVGKVTCKLLLTSRLLCPDIFRMVNVLTVMYLLLQIFTGVRGHI 6318
S + + + + GKV+ + T L PD+FR +NVL + LL+ I + +
Sbjct: 1049 ILYSNMCNKTRNSVSWVGGKVSSSVCRTINYLVPDVFRFINVLICISLLITIASEANRIV 1108
Query: 6317 QAHQQLKI-----EKQRLEDDLNFDMVMRLYNIFYERYPTNAPSLYEFEQYLQKTNQSAY 6153
A ++LK+ E++++E +L F + N + P++ EF Y+
Sbjct: 1109 TAQRRLKLDVEETERRKMEWELAFHHAILTQNA------SQHPTIDEFRAYIADKAPHLR 1162
Query: 6152 QYYMKVCGPDADDEKVEFQAKGACEIELERTVAFVALIMMMFDAERSDCVYKVLSKLRGL 5973
++ + +++ V QAK E ELER +AFVAL++MMFDAERSDCV K+L+KL+GL
Sbjct: 1163 EHI------EPEEKVVVHQAKRQSEQELERIIAFVALVLMMFDAERSDCVTKILNKLKGL 1216
Query: 5972 MAPIGTESVAFQSIDTVKEILGETKMAIDIEIDTENHQMNRLKGT-TFSDWWQNQISQGR 5796
+A + +V Q+++ +++ L E + +D E+ ++ + +L TF+ WW +Q+S+G
Sbjct: 1217 VATV-EPTVYHQTLNDIEDDLSERNLFVDFELSSDGDMLQQLPAEKTFASWWSHQLSRGF 1275
Query: 5795 TIPHYRTEGHFMEFTRANAQTVANSIAHSEHNDLLIMGAVGSGKSTGLPFYLSKKGKVLI 5616
TIPHYRTEG FM FTRA A VA IAH D+L+MGAVGSGKSTGLP++LS+KG VL+
Sbjct: 1276 TIPHYRTEGKFMTFTRATATEVAGRIAHESDKDILLMGAVGSGKSTGLPYHLSRKGNVLL 1335
Query: 5615 IEPTKPLAENVHKQLQGNPFMTQATLKMRGCNVFGSAPIHVQTSGYALHYFAHNVAQLAE 5436
+EPT+PLAENVHKQL PF TL+MRG FGSAPI V TSG+AL+YFA+N ++ E
Sbjct: 1336 LEPTRPLAENVHKQLSQAPFHQNTTLRMRGLTAFGSAPISVMTSGFALNYFANNRMRIEE 1395
Query: 5435 FKFIIFDECHVHDSAAMAFRCLLSEYDYGGKILKVSATPPGREAVFSTQHAVQVKMEENL 5256
F F+IFDECHVHD+ AMA RCLL E DY GKI+KVSATPPGRE FSTQ+ V + E+ L
Sbjct: 1396 FDFVIFDECHVHDANAMAMRCLLHECDYSGKIIKVSATPPGREVEFSTQYPVSISTEDTL 1455
Query: 5255 TFQQFVQMQGTGANGDVIQSGDNILVYVSSYNEVDSLSKLLLDAKHKVTKVDGRTMKMGQ 5076
+FQ FV QG+G+N DVI GDNILVYV+SYNEVD+LSKLL++ KVTKVDGRTMK+G
Sbjct: 1456 SFQDFVNAQGSGSNCDVISKGDNILVYVASYNEVDTLSKLLIERDFKVTKVDGRTMKVGN 1515
Query: 5075 VEIPTSGTRDKKHFIVATNIIENGVTLDIDVVVDFGMKVVPELDSDNRLIRYTKVSISYG 4896
+EI TSGT KKHFIVATNIIENGVTLDIDVV DFG KV+P LD+D+R++ TK SI+YG
Sbjct: 1516 IEITTSGTPSKKHFIVATNIIENGVTLDIDVVADFGTKVLPYLDTDSRMLSTTKTSINYG 1575
Query: 4895 ERIQRLGRVGRNKEGTALRIGATEKGLSAVPNIVATEAAFYSFAYGLPVMTNGVAVGVVA 4716
ERIQRLGRVGR+K G ALRIG TEKGLS VP+ +ATEAA F YGLPV+TN V+ ++
Sbjct: 1576 ERIQRLGRVGRHKPGHALRIGHTEKGLSEVPSCIATEAALKCFTYGLPVITNNVSTSILG 1635
Query: 4715 NCTVPQARTVLHFELPIFYMLHLVRFDGSMHPALHACLKGFKLRDSEIILNKMAIPNSGV 4536
N TV QART+ FE+ FY +VR+DGSMHP +HA LK FKLRDSEI+LNK+AIP+ GV
Sbjct: 1636 NVTVKQARTMSVFEITPFYTSQVVRYDGSMHPQVHALLKRFKLRDSEIVLNKLAIPHRGV 1695
Query: 4535 KQWLTAGEYSRIGARNSVDEFTRIPFFSKDVPDKIHEQVWEAVVTFKRDAGFGKIQSASA 4356
WLTA EY+R+GA RIPF +D+P+K+H +W+ +V FK DAGFG++ SASA
Sbjct: 1696 SAWLTASEYARLGANVEDRRDVRIPFMCRDIPEKLHLDMWDVIVKFKGDAGFGRLSSASA 1755
Query: 4355 CKVAYTLQTDAASITRTVCIIEELIKNEVKKQEYFQT-ASGIDCGSGFSLVSLTNAIRSR 4179
KVAYTLQTD SI RTV II+ LI E +KQEYF+T S S FSL S+TNAI+SR
Sbjct: 1756 SKVAYTLQTDVNSIQRTVTIIDTLIAEERRKQEYFKTVTSNCVSSSNFSLQSITNAIKSR 1815
Query: 4178 HMSNHTAENIAILEAAKGQLEEFRNLGIDPTTRTVTD---------FGALECVQFQSADG 4026
M +HT ENI++LE AK QL EFRNL D + T TD +GALE V Q+
Sbjct: 1816 MMKDHTCENISVLEGAKSQLLEFRNLNADHSFATKTDGISRHFMSEYGALEAVHHQNTSD 1875
Query: 4025 ISKQLGLKGKWNKPLITKDILVAGFTMFGGMWMIYNYLKRAITTNVEFQASGKRQNQKRR 3846
+SK L LKGKWNK LIT+D+LV + GG+WM+ +L+ ++ V +A GKRQ QK +
Sbjct: 1876 MSKFLKLKGKWNKTLITRDVLVLCGVLGGGLWMVIQHLRSKMSEPVTHEAKGKRQRQKLK 1935
Query: 3845 FQIARNNKHAFEVNPDETDVEHYFGEAYGKKAQGKGRTRGMGAKSRRFYNMYGFDPAEYT 3666
F+ AR+NK EV D+ +EH+FG+AY KK + KGRTRG+G K+R+F NMYGFDP +++
Sbjct: 1936 FRNARDNKMGREVYGDDDTIEHFFGDAYTKKGKSKGRTRGIGHKNRKFINMYGFDPEDFS 1995
Query: 3665 FARYVDPLTGYTLDESALTEVKLVQEHFGKIRHELRMREELEPEAIDYHKKIEVYFVKDL 3486
R+VDPLTG TLD+S T++ LVQEHFG IR +L +ELEP+ I +K I+ Y++ +
Sbjct: 1996 AVRFVDPLTGATLDDSPFTDITLVQEHFGNIRMDLLGEDELEPDEIRMNKTIQAYYMNNK 2055
Query: 3485 AKQVLKIDMDPHNPFEIGRNTESIAGYPERKGELRQMGKPTLMSPTLLP-AQREYEFDEP 3309
+ LK+D+ PH P ++ +IAG+PER+ ELRQ GK ++ +P A E+ P
Sbjct: 2056 TGKALKVDLTPHIPLKVCDLHATIAGFPERENELRQTGKAQPINIDEVPRANNEF---VP 2112
Query: 3308 VVFESKATFYGMRDYNPISSSVCLLANESDGYEREIHGIGYGSMIITNQHLFQHNNGTLS 3129
V ES + F G+RDYNPIS+++C L N SDG ++G+G+G +I+TN+HLF+ NNG L
Sbjct: 2113 VDHESNSMFRGLRDYNPISNNICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNGELV 2172
Query: 3128 VQSHRGKFFIPNTTQLKMYPFPGRDLLIIQMPKDFPPFPQKLKFRSPVSGDRVCMIGSNF 2949
++S G+F I NTTQL + P P RDLL+I++PKD PPFPQKL FR P G+R+CM+GSNF
Sbjct: 2173 IKSRHGEFVIKNTTQLHLLPIPDRDLLLIRLPKDVPPFPQKLSFRQPEKGERICMVGSNF 2232
Query: 2948 QDKYXXXXXXXXXXXSQKDESVFYRHWISTKTGHCGLPMVSVKDGYILGIHSLTSKDDAS 2769
Q K + S F++HWISTK G CG PMVS KDG ILG+HSL + ++
Sbjct: 2233 QTKSITSVVSETSTIMPVENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSI 2292
Query: 2768 GFLISFPQDMEKNYLQNAEQVQWTKKWRLNVDLIDWGTLNLTTNKPDNLFRLSKDLLGLM 2589
+ +FP D + YL E +W K W+ N I WG+LN+ ++P LF++SK + L
Sbjct: 2293 NYFAAFPDDFAEKYLHTIEAHEWVKHWKYNTSAISWGSLNIQASQPSGLFKVSKLISDLD 2352
Query: 2588 AEPVEFQAHENRWLYERLGGNLHAVARTTNQLVTKHVVKGKCLLFATYLETNDEAKQFFQ 2409
+ V Q +NRW++E+L GNL AVA +QLVTKH VKGKC +F YL+ +DEA+++FQ
Sbjct: 2353 STAVYAQTQQNRWMFEQLTGNLKAVAHCPSQLVTKHTVKGKCQMFDLYLKLHDEAREYFQ 2412
Query: 2408 PLMGAYQKSRLNKEAYIKDLFKYNSPTTIGVLEPDKFERAEALVMRLFERVGFSECEYVT 2229
P++G YQKS+LN+EAY KDL KY +P G ++ D FE+ +VM GF C YVT
Sbjct: 2413 PMLGQYQKSKLNREAYAKDLLKYATPIEAGNIDCDLFEKTVEIVMSDLRGYGFETCNYVT 2472
Query: 2228 CPDAIFSALNMKAAVGALYHGKKKDYFDSFSEADKAQILKDSCYRLYAGKMGVWNGSLKA 2049
+ IF ALNMK+AVGALY GKKKDYF F+ K +ILK SC RL+ GKMGVWNGSLKA
Sbjct: 2473 DENDIFEALNMKSAVGALYKGKKKDYFAEFTPEMKEEILKQSCKRLFLGKMGVWNGSLKA 2532
Query: 2048 ELRPLEKVQANKTRSFTAAPIDTLLGGKVCVDDFNNQFYSLNLKAPWSVGMTKFYGGWNE 1869
ELRPLEKV+ANKTR+FTAAP+DTLLGGKVCVDDFNNQFY NL+APWSVGMTKFY GW+
Sbjct: 2533 ELRPLEKVEANKTRTFTAAPLDTLLGGKVCVDDFNNQFYDHNLRAPWSVGMTKFYCGWDR 2592
Query: 1868 LMTSLPDGWIYCDADGSQFDSSLTPYLINAVLNLRLHFMEEWDIGEKMLENLYTEIVYTP 1689
L+ SLPDGW+YCDADGSQFDSSL+PYLINAVLN+RL FMEEWD+GE ML NLYTEIVYTP
Sbjct: 2593 LLESLPDGWVYCDADGSQFDSSLSPYLINAVLNIRLGFMEEWDVGEVMLRNLYTEIVYTP 2652
Query: 1688 IATPDGTVIKKYKGNNSGQPSTVVDNTIMVILAMYYSGEVYN-PTLSLDDYCKFFVNGDD 1512
I+TPDGT++KK+KGNNSGQPSTVVDNT+MVILA+ YS + P+ D +FFVNGDD
Sbjct: 2653 ISTPDGTLVKKFKGNNSGQPSTVVDNTLMVILAVNYSLKKSGIPSELRDSIIRFFVNGDD 2712
Query: 1511 LLIAVHPNHVDFLQDLQNSFQHLGLKYTFTSRYHTREELWFMSHKAIKVDGVYIPKLEEE 1332
LL++VHP + L + ++F+ LGLKYTF SR + +LWFMSH+ K +G++IPKLE E
Sbjct: 2713 LLLSVHPEYEYILNTMADNFRELGLKYTFDSRTREKGDLWFMSHQGHKREGIWIPKLEPE 2772
Query: 1331 RIVSILEWDRAVLPEHRLEAICASMIEAWGYPSLLHQIRKFYYWVLEQAPYSVLSSEGKA 1152
RIVSILEWDR+ P HRLEAICA+MIE+WGY L H+IRKFY W++EQAP+S L+ EGKA
Sbjct: 2773 RIVSILEWDRSKEPCHRLEAICAAMIESWGYDKLTHEIRKFYAWMIEQAPFSSLAQEGKA 2832
Query: 1151 PYISEVALKHLYLN-QIEKSELERYMDGLDWSSTQGIEE-VEFQANDTYDAG-------- 1002
PYI+E AL+ LYL+ + + +L Y+ + E V QA +T DAG
Sbjct: 2833 PYIAETALRKLYLDKEPAQEDLTHYLQAIFEDYEDDAEACVYHQAGETLDAGLTEEQKQA 2892
Query: 1001 -KKTDKPEDVEKNHEKENKELTPPPNQEAGPSKG-RDKDVDVGTKGTFQVPRLKSIGSKM 828
K+ + E EK E++ K+L ++ +G RDK+V+ GT GTF VPRLKS+ SKM
Sbjct: 2893 EKERKEREKAEKERERQ-KQLALKKGKDVAQGEGERDKEVNAGTSGTFSVPRLKSLTSKM 2951
Query: 827 TLPRVGGRVIVNLEHLLTYEPEQVDLSNTRATRSQFDSWYNGIKGAYDLNDSSMGVVLNG 648
+PR RV +NL+HL+ Y PEQ DLSNTR+TR QFD+W+ G+ Y+L + M ++LNG
Sbjct: 2952 RVPRYEKRVALNLDHLILYTPEQTDLSNTRSTRKQFDTWFEGVMADYELTEDKMQIILNG 3011
Query: 647 LMVWCIENGTSPNIHGHWTMMDGDEQVEYPLRPVVEMAQPTLRQIMSHFSALAEAYIEKR 468
LMVWCIENGTSPNI+G W MMDGD+QVE+P++P+++ A+PT RQIM+HFS +AEAYIEKR
Sbjct: 3012 LMVWCIENGTSPNINGMWVMMDGDDQVEFPIKPLIDHAKPTFRQIMAHFSDVAEAYIEKR 3071
Query: 467 NATKPYMPRYGLLRNLRDLSLARYAFDFYEVTARTPVRAREAHMQMKAAALRNSDNKMFG 288
N +PYMPRYGL RNL D+SLARYAFDFYE+T+RTP+RAREAH+QMKAAALR ++N +FG
Sbjct: 3072 NQDRPYMPRYGLQRNLTDMSLARYAFDFYEMTSRTPIRAREAHIQMKAAALRGANNNLFG 3131
Query: 287 LDGNSGDKEEDTERHTANDVNRNMHHLMGVR 195
LDGN G E+TERHT DVNRNMH+L+GV+
Sbjct: 3132 LDGNVGTTVENTERHTTEDVNRNMHNLLGVK 3162
>dbj|BAM99251.1| polyprotein [Turnip mosaic virus]
Length = 3164
Score = 2958 bits (7669), Expect = 0.0
Identities = 1526/3087 (49%), Positives = 2048/3087 (66%), Gaps = 39/3087 (1%)
Frame = -2
Query: 9338 AQQMSDGDVLVKEYENNIAKAFAKLDACAPNGDKYLGATVKRVKNTQYFTLEEKPQARAV 9159
A+ S+ V + E N F +A + K + T+ + +RA+
Sbjct: 96 AKPRSNAVVRMHEEANKERALFLDWEASLKRSSYGIAENEKVIMTTRGVSKIVPRSSRAM 155
Query: 9158 ARLDLLERETTHK-WLTQWEAGAQSVEAIVEPSAPRAQTVSEYRRPLAIDDKPSLAKRTK 8982
ER + + +WE + +I + A E R + PS+ KRT
Sbjct: 156 KHKRARERRRAQQPIILKWEPKLSGI-SIGGGLSASAVEAEEVRTKWPLHKTPSMKKRTV 214
Query: 8981 RVVHTPIRYSVENIIRAIANQNKNCKLDLEIISTKKATRARHTMWRNRLYVKAQTKHELG 8802
+ V+ + R++ K ++E I KK+ + + + Q H LG
Sbjct: 215 HRICKMNDQGVDMLTRSLVKIFKTKSANIEYIG-KKSIKVDFIRKERTKFARVQVAHLLG 273
Query: 8801 VRHKRDILVCEWGRQVLRLLVSKTAGNRAHDANMFTQGSSGIIIMSHCLSGNVSASRGNL 8622
R +RD+ + +L + + + G SGI++ + L+ S S
Sbjct: 274 KRAQRDLSTGVEENHFIDILSGYSGTKTTINPGVVCAGWSGIVVRNGILTQKRSRSPSEA 333
Query: 8621 FIVRGRDGEKLYDSQSVVTSHVASRMRHYSA-GERFWKGYGRGFNSH-TPSVGHQCRSDL 8448
F++RG KLYD++ VT ++ ++ H+SA G FWKG+ R F ++ + H C S L
Sbjct: 334 FVIRGEHEGKLYDARIKVTRTMSHKIVHFSAAGANFWKGFDRCFLAYRSDDREHTCYSGL 393
Query: 8447 DVEECGYVAAMATQVLFPCGHITCQQCADNFVSCSKNDLKEEYGTRIQGLIDEVQNKHPK 8268
DV ECG VAA+ +FPCG ITC C + R+ L D +++ +P+
Sbjct: 394 DVTECGEVAALMCLAMFPCGKITCPDCVTDSELSQGQASGPSMKHRLTQLRDVIKSSYPR 453
Query: 8267 FAHVVKFLSLFNDYLRFSNENIRQFSEAKRIIGDRKEAPFQQLAALNDLLIKVGECTSEE 8088
F H V+ L + L +NEN + F+E + I ++A F + LN +LIK T EE
Sbjct: 454 FKHAVQILDRYEQSLSSANENYQDFAEIQSISDGVEKAAFPHVNKLNAILIKGATATGEE 513
Query: 8087 AALGTANLLELVRFQKNRTDNISGTSLTHFRNKVSSKIHVNLDLMCDNQLDDDGNFKWRQ 7908
+ T +LLE+ R+ KNRT+NI SL FRNK+S K H+N LMCDNQLD +GNF W +
Sbjct: 514 FSQATKHLLEIARYLKNRTENIEKGSLKSFRNKISQKAHINPTLMCDNQLDRNGNFIWGE 573
Query: 7907 RGFHAKRMFDNFYEVVNPSKGYDSFIVRTNPNGVRKTAIGNLVISTNMATFREQMRGEPV 7728
RG+HAKR F N++E+++P KGY + R PNG RK AIG L++ TN REQM+GEPV
Sbjct: 574 RGYHAKRFFSNYFEIIDPKKGYTQYETRAVPNGSRKLAIGKLIVPTNFEVLREQMKGEPV 633
Query: 7727 EPQALSLACTSKLKGSYVYPCCCVTTDTGKPIESEMLAPTKDHLVIGNTGDSKFVTVPKI 7548
EP +++ C SKL+G +V+ CCCVTT++G P+ SE+ PTK HLVIGN+GD K++ +P+I
Sbjct: 634 EPYPVTVECVSKLQGDFVHACCCVTTESGDPVLSEIKMPTKHHLVIGNSGDPKYIDLPEI 693
Query: 7547 LEDGMYVAKEGYCYVNIFVAMLINVSDVQAKDYTRRVRDYAIPTLGKWPTLINLATVCHF 7368
E+ MY+AKEGYCY+NIF+AML+NV + QAK++T+ VRD + LGKWPTL+++AT C+F
Sbjct: 694 EENKMYIAKEGYCYINIFLAMLVNVKESQAKEFTKVVRDKLVGELGKWPTLLDVATACYF 753
Query: 7367 LTILYPDIKSAELPRILVDHKTCTMHVVDSFGSLSTGYHILKANTVGQLIKFANDELESD 7188
L + YPD+ +AELPR+LVDHKT +HVVDS+GSLSTGYH+LK NTV QLIKF LES
Sbjct: 754 LKVFYPDVANAELPRMLVDHKTKIIHVVDSYGSLSTGYHVLKTNTVEQLIKFTRCNLESS 813
Query: 7187 MKLYAVGGL-----HGXXXXXXXXXXXVIMLARGIYRPKELKSILEHDPTLLVYSLLSPC 7023
+K Y VGG HG L RG+YRPK+LK + +P L +Y+LLSP
Sbjct: 814 LKHYRVGGTEWEDTHGASNIDNPQWCIK-RLIRGVYRPKQLKEDMLANPFLPLYALLSPG 872
Query: 7022 VLIAMYKNRTFELAVSEWLQKDTEVASLCNQLEVVARKISVSKVLAVQQQLIAEQASQMI 6843
V++A Y + + E ++ +++ D+ VA L L+ +A+K+S S+ + Q ++I ++I
Sbjct: 873 VILAFYNSGSLEYLMNHYIRVDSNVAVLLVVLKSLAKKVSTSQSVLAQLRIIERSLPELI 932
Query: 6842 RSVERSQAHSP---SRHFVRLLLARIIENQQMDKELIASGFTQLRLDGDLMREKKFLEAL 6672
+ ++ + P + H + ++ + + EL G+T LR + EK +L+ L
Sbjct: 933 EA--KANVNGPDDAATHACNRFMGMLLHMAEPNWELADGGYTILRDHSISILEKSYLQIL 990
Query: 6671 AHSWRDLSWSERCTSIWRSRKHSQSGTGPSKSATSDDLNVTWRERFNSLRGGVAETIRDG 6492
+W +LSWSERC + S K + + DL + S + ++
Sbjct: 991 DEAWNELSWSERCVIRYYSSKQAIFTQKDLPMKSEADLGGRYSVSVMSSYEWSKQCVKSI 1050
Query: 6491 RSKIGATIKRKSNELVGKVTCKLLLTSRLLCPDIFRMVNVLTVMYLLLQIFTGVRGHIQA 6312
S IG+ ++ + KV+ + T L PD+F+ +NVL + LL+++ I
Sbjct: 1051 HSSIGSRLRSSMSWTSSKVSNSVCRTINYLVPDVFKFMNVLVCISLLIKMTAEANHIITT 1110
Query: 6311 HQQLKI-----EKQRLEDDLNFDMVMRLYNIFYERYPTNAPSLYEFEQYLQKTNQSAYQY 6147
++LK+ E++++E +L F ++ + P++ EF Y+ ++
Sbjct: 1111 QRRLKLDIEETERRKIEWELAF------HHAILTQSAGQHPTIDEFRAYIADKAPHLSEH 1164
Query: 6146 YMKVCGPDADDEKVEFQAKGACEIELERTVAFVALIMMMFDAERSDCVYKVLSKLRGLMA 5967
+ +++ V QAK E ELER +AFVAL++MMFDAERSDCV K+L+KL+GL+A
Sbjct: 1165 I------EPEEKVVVHQAKRQSEQELERIIAFVALVLMMFDAERSDCVTKILNKLKGLVA 1218
Query: 5966 PIGTESVAFQSIDTVKEILGETKMAIDIEIDTENHQMNRLKGT-TFSDWWQNQISQGRTI 5790
+ +V Q+++ +++ L E + +D E+ ++ + + +L TF+ WW +Q+S+G TI
Sbjct: 1219 TV-EPTVYHQTLNDIEDDLSERNLFVDFELSSDGNMLQQLPAEKTFASWWSHQLSRGFTI 1277
Query: 5789 PHYRTEGHFMEFTRANAQTVANSIAHSEHNDLLIMGAVGSGKSTGLPFYLSKKGKVLIIE 5610
PHYRTEG FM FTRA A VA I H D+L+MGAVGSGKSTGLP+YLS+KG VL++E
Sbjct: 1278 PHYRTEGKFMTFTRATATEVAGKIEHESDRDILLMGAVGSGKSTGLPYYLSRKGNVLLLE 1337
Query: 5609 PTKPLAENVHKQLQGNPFMTQATLKMRGCNVFGSAPIHVQTSGYALHYFAHNVAQLAEFK 5430
PT+PLAENVHKQL PF TL+MRG FGSAPI V TSG+AL+YFA+N ++ EF
Sbjct: 1338 PTRPLAENVHKQLSQAPFHQNTTLRMRGLTAFGSAPISVMTSGFALNYFANNRMRIEEFD 1397
Query: 5429 FIIFDECHVHDSAAMAFRCLLSEYDYGGKILKVSATPPGREAVFSTQHAVQVKMEENLTF 5250
F+IFDECHVHD+ AMA RCLL E DY GKI+KVSATPPGRE FSTQ+ V + E+ L+F
Sbjct: 1398 FVIFDECHVHDANAMAMRCLLHECDYSGKIIKVSATPPGREVEFSTQYPVSISTEDTLSF 1457
Query: 5249 QQFVQMQGTGANGDVIQSGDNILVYVSSYNEVDSLSKLLLDAKHKVTKVDGRTMKMGQVE 5070
Q FV QG+G+N DVI GDNILVYV+SYNEVD+LSKLL++ KVTKVDGRTMK+G +E
Sbjct: 1458 QDFVNAQGSGSNCDVISKGDNILVYVASYNEVDALSKLLIERDFKVTKVDGRTMKVGNIE 1517
Query: 5069 IPTSGTRDKKHFIVATNIIENGVTLDIDVVVDFGMKVVPELDSDNRLIRYTKVSISYGER 4890
I TSGT KKHFIVATNIIENGVTLDIDVV DFG KV+P LD+D+R++ TK SI+YGER
Sbjct: 1518 ITTSGTPSKKHFIVATNIIENGVTLDIDVVADFGTKVLPYLDTDSRMLSTTKTSINYGER 1577
Query: 4889 IQRLGRVGRNKEGTALRIGATEKGLSAVPNIVATEAAFYSFAYGLPVMTNGVAVGVVANC 4710
IQRLGRVGR+K G ALRIG TEKGLS VP+ +ATEAA F YGLPV+TN V+ ++ N
Sbjct: 1578 IQRLGRVGRHKPGHALRIGHTEKGLSEVPSCIATEAALKCFTYGLPVITNNVSTSILGNV 1637
Query: 4709 TVPQARTVLHFELPIFYMLHLVRFDGSMHPALHACLKGFKLRDSEIILNKMAIPNSGVKQ 4530
TV QART+ FE+ FY +VR+DGSMHP +HA LK FKLRDSEI+LNK+AIP+ GV
Sbjct: 1638 TVKQARTMSVFEITPFYTSQVVRYDGSMHPQVHALLKRFKLRDSEIVLNKLAIPHRGVNA 1697
Query: 4529 WLTAGEYSRIGARNSVDEFTRIPFFSKDVPDKIHEQVWEAVVTFKRDAGFGKIQSASACK 4350
WLTA EY+R+GA RIPF +D+P+K+H +W+ +V FK DAGFG++ SASA K
Sbjct: 1698 WLTASEYARLGANVEDRRDVRIPFMCRDIPEKLHLDMWDVIVKFKGDAGFGRLSSASASK 1757
Query: 4349 VAYTLQTDAASITRTVCIIEELIKNEVKKQEYFQT-ASGIDCGSGFSLVSLTNAIRSRHM 4173
VAYTLQTD SI RTV II+ LI E +KQEYF+T S S FSL S+TNAI+SR M
Sbjct: 1758 VAYTLQTDVNSIQRTVTIIDTLIAEERRKQEYFKTVTSNCVSSSNFSLQSITNAIKSRMM 1817
Query: 4172 SNHTAENIAILEAAKGQLEEFRNLGIDPTTRTVTD---------FGALECVQFQSADGIS 4020
+HT ENI++LE AK QL EFRNL D + T TD +GALE V Q+ +S
Sbjct: 1818 KDHTCENISVLEGAKSQLLEFRNLNADHSFATKTDGISRHFMSEYGALEAVHHQNTSDMS 1877
Query: 4019 KQLGLKGKWNKPLITKDILVAGFTMFGGMWMIYNYLKRAITTNVEFQASGKRQNQKRRFQ 3840
K L LKGKWNK LIT+D+LV G + GG+WM+ +L+ I+ V +A GKRQ QK +F+
Sbjct: 1878 KFLKLKGKWNKTLITRDVLVLGGVLGGGLWMVIQHLRSKISEPVTHEAKGKRQRQKLKFR 1937
Query: 3839 IARNNKHAFEVNPDETDVEHYFGEAYGKKAQGKGRTRGMGAKSRRFYNMYGFDPAEYTFA 3660
AR+NK EV D+ +EH+FG+AY KK +GKGRTRG+G K+R+F NMYGFDP +++
Sbjct: 1938 NARDNKMGREVYGDDDTIEHFFGDAYTKKGKGKGRTRGIGHKNRKFINMYGFDPEDFSAV 1997
Query: 3659 RYVDPLTGYTLDESALTEVKLVQEHFGKIRHELRMREELEPEAIDYHKKIEVYFVKDLAK 3480
R+VDPLTG TLD++ LT++ LVQEHFG IR L +EL+P I +K I+ Y++ +
Sbjct: 1998 RFVDPLTGATLDDNPLTDITLVQEHFGNIRTYLLGEDELDPNEIRVNKTIQAYYMNNKTG 2057
Query: 3479 QVLKIDMDPHNPFEIGRNTESIAGYPERKGELRQMGKPTLMSPTLLPAQREYEFDEPVVF 3300
+ LK+D+ PH P ++ +IAG+PER+ ELRQ GK ++ +P PV
Sbjct: 2058 KALKVDLTPHIPLKVCDLHATIAGFPERENELRQTGKAQPINIDEVPRANNELI--PVDH 2115
Query: 3299 ESKATFYGMRDYNPISSSVCLLANESDGYEREIHGIGYGSMIITNQHLFQHNNGTLSVQS 3120
ES + F G+RDYNP+S+++C L N SDG ++G+G+G +I+TN+HLF+ NNG L ++S
Sbjct: 2116 ESNSMFRGLRDYNPVSNNICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNGELVIKS 2175
Query: 3119 HRGKFFIPNTTQLKMYPFPGRDLLIIQMPKDFPPFPQKLKFRSPVSGDRVCMIGSNFQDK 2940
G+F I NTTQL + P P RDLL+I++PKD PPFPQKL FR P G+R+CM+GSNFQ K
Sbjct: 2176 RHGEFVIKNTTQLHLLPIPDRDLLLIRLPKDIPPFPQKLGFRQPEKGERICMVGSNFQTK 2235
Query: 2939 YXXXXXXXXXXXSQKDESVFYRHWISTKTGHCGLPMVSVKDGYILGIHSLTSKDDASGFL 2760
+ S F++HWISTK G CG PMVS KDG ILG+HSL + ++ +
Sbjct: 2236 SITSIVSETSTIMPVENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYF 2295
Query: 2759 ISFPQDMEKNYLQNAEQVQWTKKWRLNVDLIDWGTLNLTTNKPDNLFRLSKDLLGLMAEP 2580
+FP D + YLQ E +W K W+ N I WG+LN+ ++P LF++SK + L +
Sbjct: 2296 AAFPDDFAEKYLQTIEAHEWVKHWKYNTSAISWGSLNIQASQPSGLFKVSKLISDLDSTA 2355
Query: 2579 VEFQAHENRWLYERLGGNLHAVARTTNQLVTKHVVKGKCLLFATYLETNDEAKQFFQPLM 2400
V Q +NRW++E+L GNL A+A +QLVTKH VKGKC +F YL+ +DEA+++FQP++
Sbjct: 2356 VYAQTQQNRWMFEQLNGNLKAIAHCPSQLVTKHTVKGKCQMFDLYLKLHDEAREYFQPML 2415
Query: 2399 GAYQKSRLNKEAYIKDLFKYNSPTTIGVLEPDKFERAEALVMRLFERVGFSECEYVTCPD 2220
G YQKS+LN+EAY KDL KY +P G ++ D FE+ +V+ GF C YVT +
Sbjct: 2416 GQYQKSKLNREAYAKDLLKYATPIEAGNIDCDLFEKTVEVVVSDLRGYGFETCNYVTDEN 2475
Query: 2219 AIFSALNMKAAVGALYHGKKKDYFDSFSEADKAQILKDSCYRLYAGKMGVWNGSLKAELR 2040
IF ALNMK+AVGALY GKKKDYF F+ K +ILK SC RL+ GKMGVWNGSLKAELR
Sbjct: 2476 DIFEALNMKSAVGALYKGKKKDYFAEFTPEMKEEILKQSCERLFLGKMGVWNGSLKAELR 2535
Query: 2039 PLEKVQANKTRSFTAAPIDTLLGGKVCVDDFNNQFYSLNLKAPWSVGMTKFYGGWNELMT 1860
PLEKV+ANKTR+FTAAP+DTLLGGKVCVDDFNNQFY NL+APWSVGMTKFY GW+ L+
Sbjct: 2536 PLEKVEANKTRTFTAAPLDTLLGGKVCVDDFNNQFYDHNLRAPWSVGMTKFYCGWDRLLE 2595
Query: 1859 SLPDGWIYCDADGSQFDSSLTPYLINAVLNLRLHFMEEWDIGEKMLENLYTEIVYTPIAT 1680
SLPDGW+YCDADGSQFDSSL+PYLINAVLN+RL FMEEWD+GE ML NLYTEIVYTPI+T
Sbjct: 2596 SLPDGWVYCDADGSQFDSSLSPYLINAVLNIRLGFMEEWDVGEVMLRNLYTEIVYTPIST 2655
Query: 1679 PDGTVIKKYKGNNSGQPSTVVDNTIMVILAMYYSGEVYN-PTLSLDDYCKFFVNGDDLLI 1503
PDGT++KK+KGNNSGQPSTVVDNT+MVILA+ YS + P+ D +FFVNGDDLL+
Sbjct: 2656 PDGTLVKKFKGNNSGQPSTVVDNTLMVILAVNYSLKKSGIPSELRDSIIRFFVNGDDLLL 2715
Query: 1502 AVHPNHVDFLQDLQNSFQHLGLKYTFTSRYHTREELWFMSHKAIKVDGVYIPKLEEERIV 1323
++HP + L + ++F+ LGLKYTF SR + +LWFMSH+ K +G++IPKLE ERIV
Sbjct: 2716 SIHPEYEYILDTMADNFRELGLKYTFDSRTREKGDLWFMSHQGHKREGIWIPKLEPERIV 2775
Query: 1322 SILEWDRAVLPEHRLEAICASMIEAWGYPSLLHQIRKFYYWVLEQAPYSVLSSEGKAPYI 1143
SILEWDR+ P HRLEAICA+MIE+WGY L H+IRKFY W++EQAP+S L+ EGKAPYI
Sbjct: 2776 SILEWDRSKEPCHRLEAICAAMIESWGYDKLTHEIRKFYAWMIEQAPFSSLAQEGKAPYI 2835
Query: 1142 SEVALKHLYLN-QIEKSELERYMDGLDWSSTQGIEE-VEFQANDTYDAGKKTDKPEDVEK 969
+E AL+ LYL+ + + +L Y+ + G E V QA +T DAG ++ + +
Sbjct: 2836 AETALRKLYLDKEPAQEDLTHYLQAIFEDYEDGAEACVYHQAGETLDAGLTDEQKQAERE 2895
Query: 968 NHEKENKELTPPPNQEAGPSKG---------RDKDVDVGTKGTFQVPRLKSIGSKMTLPR 816
E+E E ++ KG RDK+V+ GT GTF VPRLKS+ SKM +PR
Sbjct: 2896 KKEREKAEKERERQKQLALKKGKDVAQEEGKRDKEVNAGTSGTFSVPRLKSLTSKMRVPR 2955
Query: 815 VGGRVIVNLEHLLTYEPEQVDLSNTRATRSQFDSWYNGIKGAYDLNDSSMGVVLNGLMVW 636
RV +NL+HL+ Y PEQ DLSNTR+TR QFD+W+ G+ Y+L + M ++LNGLMVW
Sbjct: 2956 YEKRVALNLDHLILYTPEQTDLSNTRSTRKQFDTWFEGVMADYELTEDKMQIILNGLMVW 3015
Query: 635 CIENGTSPNIHGHWTMMDGDEQVEYPLRPVVEMAQPTLRQIMSHFSALAEAYIEKRNATK 456
CIENGTSPNI+G W MMDGD+QVE+P++P+++ A+PT RQIM+HFS +AEAYIEKRN +
Sbjct: 3016 CIENGTSPNINGMWVMMDGDDQVEFPIKPLIDHAKPTFRQIMAHFSDVAEAYIEKRNQDR 3075
Query: 455 PYMPRYGLLRNLRDLSLARYAFDFYEVTARTPVRAREAHMQMKAAALRNSDNKMFGLDGN 276
PYMPRYGL RNL D+SLARYAFDFYE+T+RTP+RAREAH+QMKAAALR ++N +FGLDGN
Sbjct: 3076 PYMPRYGLQRNLTDMSLARYAFDFYEMTSRTPIRAREAHIQMKAAALRGANNNLFGLDGN 3135
Query: 275 SGDKEEDTERHTANDVNRNMHHLMGVR 195
G E+TERHT DVNRNMH+L+GV+
Sbjct: 3136 VGTTVENTERHTTEDVNRNMHNLLGVQ 3162
>dbj|BAM99238.1| polyprotein [Turnip mosaic virus]
Length = 3164
Score = 2958 bits (7668), Expect = 0.0
Identities = 1535/3039 (50%), Positives = 2038/3039 (67%), Gaps = 48/3039 (1%)
Frame = -2
Query: 9167 RAVARLDLLERETTHKWLT-QWEAGAQSVEAIVEPSAPRAQTVSEYRRPLAIDDKPSLAK 8991
RA+ ER + + + +WE + PSA + V E R + PS+ K
Sbjct: 153 RAMKHKRARERRNSQQQIALKWEPRLSEISIGGGPSASEIE-VEEVRARWPLHKTPSMKK 211
Query: 8990 RTKRVVHTPIRYSVENIIRAIANQNKNCKLDLEIISTKKATRARHTMWRNRLYVKAQTKH 8811
+T V ++ ++R++ K ++E +K+ R + + Q H
Sbjct: 212 KTVHKVPRMNGQGIDMLMRSLIKIFKVKNANIEYTG-RKSVRVDFIKKERVNFARVQVAH 270
Query: 8810 ELGVRHKRDILVCEWGRQVLRLLVSKTAGNRAHDANMFTQGSSGIIIMSHCLSGNVSASR 8631
LG R +RD+L + + +L + R + + G SGII+ + L+ S S
Sbjct: 271 LLGKRAQRDLLTGVEENRFIDMLSDYSGNKRTINPGVVRAGWSGIIVRNGALTQERSRSP 330
Query: 8630 GNLFIVRGRDGEKLYDSQSVVTSHVASRMRHYSA-GERFWKGYGRGFNSHTPSVG-HQCR 8457
F++RG KLYD++ VT ++ ++ H+SA G FWKG+ R F ++ + H C
Sbjct: 331 SKAFVIRGEHEGKLYDARVKVTKMMSHKIVHFSAAGNNFWKGFDRCFLAYRSNDREHTCY 390
Query: 8456 SDLDVEECGYVAAMATQVLFPCGHITCQQCADNFVSCSKNDLKEEYGTRIQGLIDEVQNK 8277
+ LDV ECG VAA+ +FPCG ITC C + R+ L + +++
Sbjct: 391 TGLDVTECGEVAALMCLAMFPCGKITCPDCVTDSELVQGQASTPNIRHRLAQLREVIKSS 450
Query: 8276 HPKFAHVVKFLSLFNDYLRFSNENIRQFSEAKRIIGDRKEAPFQQLAALNDLLIKVGECT 8097
+P+F H V+ L + L N N + F+E + + ++A F LN +LIK T
Sbjct: 451 YPRFKHAVQILDRYEQSLNGENANYQDFAEIQSLTDGMEKAAFPHANKLNAILIKGATAT 510
Query: 8096 SEEAALGTANLLELVRFQKNRTDNISGTSLTHFRNKVSSKIHVNLDLMCDNQLDDDGNFK 7917
EE T +LLE+ R+ KNRT+NI SL FRNK+S K H+N LMCDNQLD +GNF
Sbjct: 511 GEEYEQATKHLLEITRYMKNRTENIEKGSLKSFRNKISQKAHINPTLMCDNQLDKNGNFI 570
Query: 7916 WRQRGFHAKRMFDNFYEVVNPSKGYDSFIVRTNPNGVRKTAIGNLVISTNMATFREQMRG 7737
W +RG+HAKR F N++E+++P KGY + R PNG RK AIG L++ TN REQMRG
Sbjct: 571 WGERGYHAKRFFSNYFEIIDPKKGYTQYETRIVPNGSRKLAIGKLIVPTNFEVLREQMRG 630
Query: 7736 EPVEPQALSLACTSKLKGSYVYPCCCVTTDTGKPIESEMLAPTKDHLVIGNTGDSKFVTV 7557
EPVEP +++ C SK +G +V+ CCCVTT++G P+ S++ PTK HLVIGN+GD K+V +
Sbjct: 631 EPVEPHPITVECVSKSQGDFVHACCCVTTESGDPVLSDIKMPTKHHLVIGNSGDPKYVDL 690
Query: 7556 PKILEDGMYVAKEGYCYVNIFVAMLINVSDVQAKDYTRRVRDYAIPTLGKWPTLINLATV 7377
P+I E+ MY+AKEGYCY+NIF+AML+NV + QAK +T+ VRD + LGKWPTL+++AT
Sbjct: 691 PEIEENKMYIAKEGYCYINIFLAMLVNVKESQAKGFTKVVRDKLVGELGKWPTLLDVATA 750
Query: 7376 CHFLTILYPDIKSAELPRILVDHKTCTMHVVDSFGSLSTGYHILKANTVGQLIKFANDEL 7197
C+FL + YPD+ +AELPR+LVDHKT +HVVDS+GSLSTGYHILK NTV QLIKF L
Sbjct: 751 CYFLKVFYPDVANAELPRMLVDHKTKIIHVVDSYGSLSTGYHILKTNTVEQLIKFTRQNL 810
Query: 7196 ESDMKLYAVGGL-----HGXXXXXXXXXXXVIMLARGIYRPKELKSILEHDPTLLVYSLL 7032
ES +K Y VGG HG L +G+YRPK+LK + +P L +Y+LL
Sbjct: 811 ESSLKHYRVGGTKWEDAHGANNIDNPQWCIR-RLIKGVYRPKQLKEDMLTNPFLPLYALL 869
Query: 7031 SPCVLIAMYKNRTFELAVSEWLQKDTEVASLCNQLEVVARKISVSKVLAVQQQLIAEQAS 6852
SP V++A Y + + E ++ +++ D+ A L L+ +A+K+S S+ + Q Q+I
Sbjct: 870 SPGVILAFYNSGSLEYLMNYYIKADSNTAVLLVVLKSLAKKVSASQSVLAQLQVIERSLP 929
Query: 6851 QMIRSVERSQA-HSPSRHFVRLLLARIIENQQMDKELIASGFTQLRLDGDLMREKKFLEA 6675
+++ + S + L +I + + EL + G+T LR + EK +L+
Sbjct: 930 ELVEARANIVGPDSAASQACNKFLGMLIHMSEPNNELASGGYTILRDHSITILEKSYLQI 989
Query: 6674 LAHSWRDLSWSERCTSIWRSRKHS---------QSGTG-PSKSATSDDLNVTW-RERFNS 6528
L +W +LSWSERC + S K + QSG + + S + W R+R
Sbjct: 990 LDEAWSELSWSERCAIKYYSSKQAIFSQRDLPMQSGVDLGGRYSESVISSYEWSRQRMKK 1049
Query: 6527 LRGGVAETIRDGRSKIGATIKRKSNELVGKVTCKLLLTSRLLCPDIFRMVNVLTVMYLLL 6348
L G+ R+ S I GKV+ + T L PD+F+ +NVL + LL+
Sbjct: 1050 LYSGLCNKTRNSVSWIS-----------GKVSSSVCRTINYLVPDVFKFINVLVCISLLI 1098
Query: 6347 QIFTGVRGHIQAHQQLKI-----EKQRLEDDLNFDMVMRLYNIFYERYPTNAPSLYEFEQ 6183
I + + A ++LK+ E++++E +L F + ++ +++PT F++
Sbjct: 1099 TIASEANRIVTAQRKLKLDVAETERKKIEWELAFHHSILTHSA--KQHPT-------FDE 1149
Query: 6182 YLQKTNQSAYQYYMKVCGPDADDEKVEFQAKGACEIELERTVAFVALIMMMFDAERSDCV 6003
++ N +A + + +++ V QAK E ELER VAFVAL++MMFDAERSDCV
Sbjct: 1150 FVAYINANAPHLSEHI---EIEEKAVVHQAKRQSEQELERIVAFVALVLMMFDAERSDCV 1206
Query: 6002 YKVLSKLRGLMAPIGTESVAFQSIDTVKEILGETKMAIDIEIDTENHQMNRLKGT-TFSD 5826
K+L+KL+GL++ + +V Q+++ +++ L E + +D E+ +++ + +L TF+
Sbjct: 1207 TKILNKLKGLVSTV-EPTVYHQALNDIEDDLTERNLFVDFELSSDSEIVQQLPAEKTFAS 1265
Query: 5825 WWQNQISQGRTIPHYRTEGHFMEFTRANAQTVANSIAHSEHNDLLIMGAVGSGKSTGLPF 5646
WW +Q+S+G TIPHYRTEG FM FTRA A VA IAH D+L+MGAVGSGKSTGLP+
Sbjct: 1266 WWSHQLSRGFTIPHYRTEGKFMTFTRATATEVAGRIAHESDKDILLMGAVGSGKSTGLPY 1325
Query: 5645 YLSKKGKVLIIEPTKPLAENVHKQLQGNPFMTQATLKMRGCNVFGSAPIHVQTSGYALHY 5466
+LS+KG VL++EPT+PLAENVHKQL PF TL+MRG FGSAPI V TSG+AL+Y
Sbjct: 1326 HLSRKGNVLLLEPTRPLAENVHKQLSQAPFYQNTTLRMRGLTAFGSAPISVMTSGFALNY 1385
Query: 5465 FAHNVAQLAEFKFIIFDECHVHDSAAMAFRCLLSEYDYGGKILKVSATPPGREAVFSTQH 5286
FA+N A++ EF F+IFDECHVHD+ AMA RCLL E DY GKI+KVSATPPGRE FSTQ+
Sbjct: 1386 FANNRARIEEFDFVIFDECHVHDANAMAMRCLLHECDYSGKIIKVSATPPGREVEFSTQY 1445
Query: 5285 AVQVKMEENLTFQQFVQMQGTGANGDVIQSGDNILVYVSSYNEVDSLSKLLLDAKHKVTK 5106
V + E+ L+FQ FV QG+G+N DVI GDNILVYV+SYNEVD+LSKLL + KVTK
Sbjct: 1446 PVTINTEDTLSFQDFVNAQGSGSNCDVISKGDNILVYVASYNEVDTLSKLLAERDFKVTK 1505
Query: 5105 VDGRTMKMGQVEIPTSGTRDKKHFIVATNIIENGVTLDIDVVVDFGMKVVPELDSDNRLI 4926
VDGRTMK+G +EI TSGT KKHFIVATNIIENGVTLDIDVV DFG KV+P LD+DNR++
Sbjct: 1506 VDGRTMKVGNIEITTSGTPSKKHFIVATNIIENGVTLDIDVVADFGTKVLPYLDTDNRML 1565
Query: 4925 RYTKVSISYGERIQRLGRVGRNKEGTALRIGATEKGLSAVPNIVATEAAFYSFAYGLPVM 4746
TK SI+YGERIQRLGRVGR+K G ALRIG TEKGLS VP+ +ATEAA F YGLPV+
Sbjct: 1566 STTKTSINYGERIQRLGRVGRHKPGHALRIGHTEKGLSEVPSCIATEAALKCFTYGLPVI 1625
Query: 4745 TNGVAVGVVANCTVPQARTVLHFELPIFYMLHLVRFDGSMHPALHACLKGFKLRDSEIIL 4566
TN V+ ++ N TV QART+ FE+ FY +VR+DGSMHP +HA LK FKLRDSEI L
Sbjct: 1626 TNNVSTSILGNVTVKQARTMSVFEITPFYTSQVVRYDGSMHPQVHALLKRFKLRDSEIAL 1685
Query: 4565 NKMAIPNSGVKQWLTAGEYSRIGARNSVDEFTRIPFFSKDVPDKIHEQVWEAVVTFKRDA 4386
NK+AIPN GV WLTA EY+R+GA RIPF +D+P+K+H ++W+ VV FK DA
Sbjct: 1686 NKLAIPNRGVNAWLTASEYARLGANVEDRRDVRIPFMCRDIPEKLHLEMWDVVVKFKGDA 1745
Query: 4385 GFGKIQSASACKVAYTLQTDAASITRTVCIIEELIKNEVKKQEYFQT-ASGIDCGSGFSL 4209
GFG++ SASA KVAYTLQTD SI RTV II+ LI E +KQEYF+T S S FSL
Sbjct: 1746 GFGRLSSASASKVAYTLQTDVNSIQRTVTIIDTLIAEERRKQEYFKTVTSNCVSSSNFSL 1805
Query: 4208 VSLTNAIRSRHMSNHTAENIAILEAAKGQLEEFRNLGIDPTTRT---------VTDFGAL 4056
S+TNAI+SR M +HT ENI++LE AK QL EFRNL D + T ++D+GAL
Sbjct: 1806 QSITNAIKSRMMKDHTCENISVLEGAKSQLLEFRNLNADHSFTTKSDGISRSFMSDYGAL 1865
Query: 4055 ECVQFQSADGISKQLGLKGKWNKPLITKDILVAGFTMFGGMWMIYNYLKRAITTNVEFQA 3876
E V QS + +SK L LKGKWNK LIT+D+LV + GG+WMI L+ IT V +A
Sbjct: 1866 EAVHHQSTNEMSKFLKLKGKWNKTLITRDVLVICGVLGGGIWMIIQRLQSGITEPVTHEA 1925
Query: 3875 SGKRQNQKRRFQIARNNKHAFEVNPDETDVEHYFGEAYGKKAQGKGRTRGMGAKSRRFYN 3696
GKRQ QK +F+ AR+NK EV D+ +EHYFGEAY KK + KGRTRG+G K+R+F N
Sbjct: 1926 KGKRQRQKLKFRNARDNKMGREVYGDDDTIEHYFGEAYTKKGKSKGRTRGLGHKNRKFIN 1985
Query: 3695 MYGFDPAEYTFARYVDPLTGYTLDESALTEVKLVQEHFGKIRHELRMREELEPEAIDYHK 3516
MYGFDP +++ R+VDPLTG TLDE+ T++ LVQ+HFG IR++L ++ELEPE++ +HK
Sbjct: 1986 MYGFDPEDFSAVRFVDPLTGATLDENPFTDITLVQKHFGDIRNDLLAQDELEPESLRFHK 2045
Query: 3515 KIEVYFVKDLAKQVLKIDMDPHNPFEIGRNTESIAGYPERKGELRQMGKPTLMSPTLLPA 3336
I+ Y+ + + LK+D+ PH P ++ +IAG+PER+ ELRQ GK +S +P
Sbjct: 2046 TIQAYYTNNKTGKALKVDLTPHMPLKVCDIHATIAGFPEREFELRQTGKAQPISIDEVPK 2105
Query: 3335 QREYEFDEPVVFESKATFYGMRDYNPISSSVCLLANESDGYEREIHGIGYGSMIITNQHL 3156
V ES + F G+RDYNPIS+++C L N SDG ++G+G+G +I+TN+HL
Sbjct: 2106 ANTEVVS--VDHESSSMFRGLRDYNPISNNICHLTNNSDGASNSLYGVGFGPLILTNRHL 2163
Query: 3155 FQHNNGTLSVQSHRGKFFIPNTTQLKMYPFPGRDLLIIQMPKDFPPFPQKLKFRSPVSGD 2976
F+ NNG L ++S G+F I NTTQL + P P RDLL+I++PKD PPFPQKL FR P G+
Sbjct: 2164 FERNNGELLIKSRHGEFVIRNTTQLHLLPIPDRDLLLIRLPKDIPPFPQKLGFRQPEKGE 2223
Query: 2975 RVCMIGSNFQDKYXXXXXXXXXXXSQKDESVFYRHWISTKTGHCGLPMVSVKDGYILGIH 2796
R+CM+GSNFQ K + S F++HWISTK G CG PMVS KDG ILG+H
Sbjct: 2224 RICMVGSNFQMKSITSVVSETSTVMPVENSQFWKHWISTKDGQCGSPMVSTKDGKILGLH 2283
Query: 2795 SLTSKDDASGFLISFPQDMEKNYLQNAEQVQWTKKWRLNVDLIDWGTLNLTTNKPDNLFR 2616
SL + ++ + +FP D + YL E +W K W+ N I WG+LN+ +P LF+
Sbjct: 2284 SLANFQNSINYFAAFPDDFAEKYLHTFETHEWVKHWKYNTSGISWGSLNIQAAQPAGLFK 2343
Query: 2615 LSKDLLGLMAEPVEFQAHENRWLYERLGGNLHAVARTTNQLVTKHVVKGKCLLFATYLET 2436
+SK + L + V Q +NRW+YE+L GNL A+A +QLVTKH VKGKC +F YL+
Sbjct: 2344 VSKLISDLDSTAVYAQTQQNRWMYEQLTGNLKAIAHCPSQLVTKHTVKGKCQMFDLYLKL 2403
Query: 2435 NDEAKQFFQPLMGAYQKSRLNKEAYIKDLFKYNSPTTIGVLEPDKFERAEALVMRLFERV 2256
+DEA+++FQPL+G YQKS+LN+EAY KDL KY +P G ++ D FE +V+
Sbjct: 2404 HDEAREYFQPLLGQYQKSKLNREAYAKDLLKYATPIEAGNIDCDLFEETVEIVISDLWDY 2463
Query: 2255 GFSECEYVTCPDAIFSALNMKAAVGALYHGKKKDYFDSFSEADKAQILKDSCYRLYAGKM 2076
GF C YVT + IF ALNMK+AVGALY GKKKDYF F+ K +ILK SC RL+ GKM
Sbjct: 2464 GFEVCNYVTDENDIFEALNMKSAVGALYKGKKKDYFAEFTPEMKEEILKQSCERLFLGKM 2523
Query: 2075 GVWNGSLKAELRPLEKVQANKTRSFTAAPIDTLLGGKVCVDDFNNQFYSLNLKAPWSVGM 1896
GVWNGSLKAELRPLEKV+ANKTR+FTAAP+DTLLGGKVCVDDFNNQFY NLKAPWSVGM
Sbjct: 2524 GVWNGSLKAELRPLEKVEANKTRTFTAAPLDTLLGGKVCVDDFNNQFYDHNLKAPWSVGM 2583
Query: 1895 TKFYGGWNELMTSLPDGWIYCDADGSQFDSSLTPYLINAVLNLRLHFMEEWDIGEKMLEN 1716
TKFY GW+ L+ SLPDGWIYCDADGSQFDSSL+PYLINAVLN+RL FMEEWDIGE ML N
Sbjct: 2584 TKFYCGWDRLLQSLPDGWIYCDADGSQFDSSLSPYLINAVLNIRLEFMEEWDIGEIMLRN 2643
Query: 1715 LYTEIVYTPIATPDGTVIKKYKGNNSGQPSTVVDNTIMVILAMYYSGEVYN-PTLSLDDY 1539
LYTEIVYTPI+TPDGT++KK+KGNNSGQPSTVVDNT+MVILA+ YS + P+ D
Sbjct: 2644 LYTEIVYTPISTPDGTLVKKFKGNNSGQPSTVVDNTLMVILAVNYSLKKSGIPSELRDSI 2703
Query: 1538 CKFFVNGDDLLIAVHPNHVDFLQDLQNSFQHLGLKYTFTSRYHTREELWFMSHKAIKVDG 1359
+FFVNGDDLL++VHP + L + ++F+ LGLKYTF SR + +LWFMSH+ + +G
Sbjct: 2704 VRFFVNGDDLLLSVHPEYEYVLDTMADNFRELGLKYTFDSRTKEKGDLWFMSHQGHRREG 2763
Query: 1358 VYIPKLEEERIVSILEWDRAVLPEHRLEAICASMIEAWGYPSLLHQIRKFYYWVLEQAPY 1179
++IPKLE ERIVSILEWDR+ P HRLEAICA+MIE+WGY L H+IRKFY WV+EQAP+
Sbjct: 2764 IWIPKLEPERIVSILEWDRSKEPCHRLEAICAAMIESWGYDRLTHEIRKFYAWVIEQAPF 2823
Query: 1178 SVLSSEGKAPYISEVALKHLYLN-QIEKSELERYMDGLDWSSTQGIEE-VEFQANDTYDA 1005
+ L+ EGKAPYI+E AL+ LYL+ + + +L +Y++ + +G E V QAN+T DA
Sbjct: 2824 NSLAQEGKAPYIAETALRKLYLDKEPSQEDLTQYLEAIFEDYEEGTEVCVYHQANETLDA 2883
Query: 1004 G---------KKTDKPEDVEKNHEKENKELTPPPNQEAGPSKGRDKDVDVGTKGTFQVPR 852
G K+ + E EK EK+ + A RDK+V+ GT GTF VPR
Sbjct: 2884 GLTEEQKQAEKERKEREKAEKEREKQKQLALKKGKGSAQEDGERDKEVNAGTSGTFSVPR 2943
Query: 851 LKSIGSKMTLPRVGGRVIVNLEHLLTYEPEQVDLSNTRATRSQFDSWYNGIKGAYDLNDS 672
LKS+ SKM +P+ ++ +NL+HL+ Y PEQ DLSNTR+T+ QF++W+ G+ Y+L +
Sbjct: 2944 LKSLASKMRVPKYEKKLALNLDHLILYTPEQTDLSNTRSTQKQFNTWFEGVMADYELTED 3003
Query: 671 SMGVVLNGLMVWCIENGTSPNIHGHWTMMDGDEQVEYPLRPVVEMAQPTLRQIMSHFSAL 492
M ++LNGLMVWCIENGTSPNI+G W MMDGD+QVE+P++P+++ A+PT RQIM+HFS +
Sbjct: 3004 KMQIILNGLMVWCIENGTSPNINGMWVMMDGDDQVEFPIKPLIDHAKPTFRQIMAHFSDV 3063
Query: 491 AEAYIEKRNATKPYMPRYGLLRNLRDLSLARYAFDFYEVTARTPVRAREAHMQMKAAALR 312
AEAYIEKRN +PYMPRYGL RNL D+SLARYAFDFYE+T+RTP+RAREAH+QMKAAALR
Sbjct: 3064 AEAYIEKRNQDRPYMPRYGLQRNLTDMSLARYAFDFYEMTSRTPIRAREAHIQMKAAALR 3123
Query: 311 NSDNKMFGLDGNSGDKEEDTERHTANDVNRNMHHLMGVR 195
++N +FGLDGN G E+TERHT DVNRNMH+L+GV+
Sbjct: 3124 GANNNLFGLDGNVGTTVENTERHTTEDVNRNMHNLLGVK 3162
>dbj|BAQ56309.1| polyprotein [Turnip mosaic virus]
Length = 3164
Score = 2957 bits (7666), Expect = 0.0
Identities = 1525/3026 (50%), Positives = 2038/3026 (67%), Gaps = 44/3026 (1%)
Frame = -2
Query: 9140 ERETTHKW---LTQWEAGAQSVEAIVEPSAPRAQTVSEYRRPLAIDDKPSLAKRTKRVVH 8970
++ T KW L+++ G +S + +E E R + PSL KR +VH
Sbjct: 167 QQPITLKWEPKLSEFSIGGRSSASAIE--------AEEVRTKWPLHKTPSLKKR---MVH 215
Query: 8969 TPIRYS---VENIIRAIANQNKNCKLDLEIISTKKATRARHTMWRNRLYVKAQTKHELGV 8799
+ S V+ +IR++ K ++E I KK+ +A + + Q H LG
Sbjct: 216 KTCKMSDQGVDMLIRSLVKIFKAKSANIEYIR-KKSIKADFIRKERTKFARVQVAHLLGK 274
Query: 8798 RHKRDILVCEWGRQVLRLLVSKTAGNRAHDANMFTQGSSGIIIMSHCLSGNVSASRGNLF 8619
R +RD+L + +L + + + G SG+I+ + L+ S S F
Sbjct: 275 RAQRDLLAGVEENHFIDILSEYSGNKTVINPGVVCAGWSGVIVRNEVLTQKRSRSPSKAF 334
Query: 8618 IVRGRDGEKLYDSQSVVTSHVASRMRHYSA-GERFWKGYGRGFNSH-TPSVGHQCRSDLD 8445
++RG KLYD++ +T ++ ++ H+SA G FWKG+ R F ++ + + H C S LD
Sbjct: 335 VIRGEHEGKLYDARIKITKTMSLKIVHFSAAGANFWKGFDRCFLAYRSDNREHTCYSGLD 394
Query: 8444 VEECGYVAAMATQVLFPCGHITCQQCADNFVSCSKNDLKEEYGTRIQGLIDEVQNKHPKF 8265
V ECG VAA+ +FPCG ITC C + R+ L D +++ +P+F
Sbjct: 395 VTECGEVAALMCLAMFPCGKITCPDCVTDSELSQGQASGPSMKHRLTQLRDVIKSSYPRF 454
Query: 8264 AHVVKFLSLFNDYLRFSNENIRQFSEAKRIIGDRKEAPFQQLAALNDLLIKVGECTSEEA 8085
H V+ L + L +NEN + F+E + I ++A F + LN +LIK T EE
Sbjct: 455 KHAVQILDRYEQSLSSANENYQDFAEIQSISDGVEKAAFPHVNKLNAILIKGATATGEEF 514
Query: 8084 ALGTANLLELVRFQKNRTDNISGTSLTHFRNKVSSKIHVNLDLMCDNQLDDDGNFKWRQR 7905
+ T +LLE+ R+ KNRT+NI SL FRNKVS K H+N LMCDNQLD +GNF W +R
Sbjct: 515 SQATKHLLEIARYLKNRTENIEKGSLKSFRNKVSQKAHINPTLMCDNQLDKNGNFIWGER 574
Query: 7904 GFHAKRMFDNFYEVVNPSKGYDSFIVRTNPNGVRKTAIGNLVISTNMATFREQMRGEPVE 7725
G+HAKR F N++E+++P KGY + R PNG RK AIG L++ TN REQMRGEPVE
Sbjct: 575 GYHAKRFFSNYFEIIDPKKGYTQYETRIVPNGSRKLAIGKLIVPTNFEVLREQMRGEPVE 634
Query: 7724 PQALSLACTSKLKGSYVYPCCCVTTDTGKPIESEMLAPTKDHLVIGNTGDSKFVTVPKIL 7545
P +++ C SK +G +V+ CCCVTT++G P+ SE+ PTK HLVIGN+GD K++ +P+I
Sbjct: 635 PYPVTVECVSKSQGDFVHACCCVTTESGDPVLSEIKMPTKHHLVIGNSGDPKYIDLPEIE 694
Query: 7544 EDGMYVAKEGYCYVNIFVAMLINVSDVQAKDYTRRVRDYAIPTLGKWPTLINLATVCHFL 7365
E+ MY+AKEGYCY+NIF+AML+NV + QAK++T+ VRD + LGKWP+L+++AT C+FL
Sbjct: 695 ENKMYIAKEGYCYINIFLAMLVNVKESQAKEFTKVVRDKLVSELGKWPSLLDVATACYFL 754
Query: 7364 TILYPDIKSAELPRILVDHKTCTMHVVDSFGSLSTGYHILKANTVGQLIKFANDELESDM 7185
+ YPD+ +AELPR+LVDHKT +HVVDS+GSLSTGYH+LK NTV QLIKF LES +
Sbjct: 755 KVFYPDVANAELPRMLVDHKTKIIHVVDSYGSLSTGYHVLKTNTVEQLIKFTRCNLESSL 814
Query: 7184 KLYAVGGL-----HGXXXXXXXXXXXVIMLARGIYRPKELKSILEHDPTLLVYSLLSPCV 7020
K Y VGG HG L +G+YRPK+LK + +P L +Y+LLSP V
Sbjct: 815 KHYRVGGTEWENAHGADNIDNPQWCIK-RLVKGVYRPKQLKEDMLANPFLPLYALLSPGV 873
Query: 7019 LIAMYKNRTFELAVSEWLQKDTEVASLCNQLEVVARKISVSKVLAVQQQLIAEQASQMIR 6840
++A Y + + E ++ ++ D+ VA L L+ +A+K+S S+ + Q Q+I +++
Sbjct: 874 ILAFYNSGSLEYLMNHYIGADSNVAVLLVVLKSLAQKVSTSQSVLAQLQIIERSLPELVE 933
Query: 6839 SVERSQAHSPSRHFVRL---LLARIIENQQMDKELIASGFTQLRLDGDLMREKKFLEALA 6669
+ ++ + P R + ++ + + EL G+T LR + EK +L+ L
Sbjct: 934 A--KANINGPDGAASRACNRFMGMLLHMAEPNYELANGGYTTLRDHSISILEKSYLQILD 991
Query: 6668 HSWRDLSWSERCTSIWRSRKHSQSGTGPSKSATSDDLNVTWRERFNSLRGGVAETIRDGR 6489
+W +LSWSERC + S K + + DL + S + + +
Sbjct: 992 EAWNELSWSERCVIRYYSSKQAIFTQKDLPMQSEADLGGRYSASVISSYEWSKQQAKGVK 1051
Query: 6488 SKIGATIKRKSNELVGKVTCKLLLTSRLLCPDIFRMVNVLTVMYLLLQIFTGVRGHIQAH 6309
S I ++ + KV+ + T L PD+FR +NVL + LL+++ I
Sbjct: 1052 SSIANKLRSSMSWTSSKVSNSVCRTINYLVPDVFRFMNVLVCISLLIKMTAEANQIITTQ 1111
Query: 6308 QQLKI-----EKQRLEDDLNFDMVMRLYNIFYERYPTNAPSLYEFEQYLQKTNQSAYQYY 6144
++LK+ E++++E +L F ++ + P+L EF Y+ + ++
Sbjct: 1112 RRLKLDIEETERRKIEWELAF------HHSMLTQSAGQHPTLDEFTTYIAEQAPHLSEHI 1165
Query: 6143 MKVCGPDADDEKVEFQAKGACEIELERTVAFVALIMMMFDAERSDCVYKVLSKLRGLMAP 5964
+ +D+ V QAK E ELER +AFVAL++MMFDAERSDCV K+L+KL+GL+A
Sbjct: 1166 ------EPEDKAVVHQAKRQSEQELERVIAFVALVLMMFDAERSDCVTKILNKLKGLVAT 1219
Query: 5963 IGTESVAFQSIDTVKEILGETKMAIDIEIDTENHQMNRLKGT-TFSDWWQNQISQGRTIP 5787
+ +V Q+++ +++ L E + +D E+ ++ + +L TF+ WW +Q+S+G TIP
Sbjct: 1220 V-EPTVYHQTLNEIEDDLSERNLFVDFELSSDGEMLQQLPAEKTFASWWSHQLSRGFTIP 1278
Query: 5786 HYRTEGHFMEFTRANAQTVANSIAHSEHNDLLIMGAVGSGKSTGLPFYLSKKGKVLIIEP 5607
HYRTEG FM FTRA A VA IAH D+L+MGAVGSGKSTGLP++LS+KG VL++EP
Sbjct: 1279 HYRTEGKFMTFTRATATEVAGKIAHESDKDILLMGAVGSGKSTGLPYHLSRKGNVLLLEP 1338
Query: 5606 TKPLAENVHKQLQGNPFMTQATLKMRGCNVFGSAPIHVQTSGYALHYFAHNVAQLAEFKF 5427
T+PLAENVHKQL PF TL+MRG FGSAPI V TSG+AL+YFA+N +++ EF F
Sbjct: 1339 TRPLAENVHKQLSQAPFHQNTTLRMRGLTAFGSAPISVMTSGFALNYFANNRSRIEEFDF 1398
Query: 5426 IIFDECHVHDSAAMAFRCLLSEYDYGGKILKVSATPPGREAVFSTQHAVQVKMEENLTFQ 5247
+IFDECHVHD+ AMA RCLL E DY GKI+KVSATPPGRE FSTQ+ V + E+ L+FQ
Sbjct: 1399 VIFDECHVHDANAMAMRCLLHECDYSGKIIKVSATPPGREVEFSTQYPVTISTEDTLSFQ 1458
Query: 5246 QFVQMQGTGANGDVIQSGDNILVYVSSYNEVDSLSKLLLDAKHKVTKVDGRTMKMGQVEI 5067
FV QG+G+N DV+ GDNILVYV+SYNEVD+LSKLL++ KVTKVDGRTMK+G +EI
Sbjct: 1459 DFVNAQGSGSNCDVVSKGDNILVYVASYNEVDTLSKLLIERDFKVTKVDGRTMKVGNIEI 1518
Query: 5066 PTSGTRDKKHFIVATNIIENGVTLDIDVVVDFGMKVVPELDSDNRLIRYTKVSISYGERI 4887
TSGT KKHFIVATNIIENGVTLDIDVV DFG KV+P LD+DNR++ TK SI+YGERI
Sbjct: 1519 TTSGTPSKKHFIVATNIIENGVTLDIDVVADFGTKVLPYLDTDNRMLSTTKTSINYGERI 1578
Query: 4886 QRLGRVGRNKEGTALRIGATEKGLSAVPNIVATEAAFYSFAYGLPVMTNGVAVGVVANCT 4707
QRLGRVGR+K G ALRIG TEKGLS VP+ +ATEAA F YGLPV+TN V+ ++ N T
Sbjct: 1579 QRLGRVGRHKPGHALRIGHTEKGLSEVPSCIATEAALKCFTYGLPVITNNVSTSILGNVT 1638
Query: 4706 VPQARTVLHFELPIFYMLHLVRFDGSMHPALHACLKGFKLRDSEIILNKMAIPNSGVKQW 4527
V QART+ FE+ FY +VR+DGSMHP +HA LK FKLRDSEI+LNK+AIPN GV W
Sbjct: 1639 VKQARTMSVFEVTPFYTSQVVRYDGSMHPQVHALLKRFKLRDSEIVLNKLAIPNRGVNAW 1698
Query: 4526 LTAGEYSRIGARNSVDEFTRIPFFSKDVPDKIHEQVWEAVVTFKRDAGFGKIQSASACKV 4347
LTA EY+R+GA RIPF +D+P+K+H +W+ +V FK DAGFG++ SASA KV
Sbjct: 1699 LTASEYARLGANVEDRRDVRIPFMCRDIPEKLHLDMWDVIVKFKGDAGFGRLSSASASKV 1758
Query: 4346 AYTLQTDAASITRTVCIIEELIKNEVKKQEYFQT-ASGIDCGSGFSLVSLTNAIRSRHMS 4170
AYTLQTD SI RTV II+ LI E +KQEYF+T S S FSL S+TNAI+SR M+
Sbjct: 1759 AYTLQTDVNSIQRTVTIIDTLIAEERRKQEYFKTVTSNCVSSSNFSLQSITNAIKSRMMT 1818
Query: 4169 NHTAENIAILEAAKGQLEEFRNLGIDPTTRTVT---------DFGALECVQFQSADGISK 4017
+HT ENI++LE AK QL EFRNL D + T T D+GALE V QS + +SK
Sbjct: 1819 DHTCENISVLEGAKSQLLEFRNLNSDHSFITKTDGISRSFMRDYGALEAVHHQSTNEMSK 1878
Query: 4016 QLGLKGKWNKPLITKDILVAGFTMFGGMWMIYNYLKRAITTNVEFQASGKRQNQKRRFQI 3837
L LKGKWNK LIT+D+LV + GG+WM+ +L+ I+ V +A GKRQ QK +F+
Sbjct: 1879 FLQLKGKWNKTLITRDVLVICGVLGGGIWMVVQHLRSKISEPVTHEAKGKRQRQKLKFRN 1938
Query: 3836 ARNNKHAFEVNPDETDVEHYFGEAYGKKAQGKGRTRGMGAKSRRFYNMYGFDPAEYTFAR 3657
AR+NK EV D+ +EH+FG+AY KK + KGRTRG+G K+R+F NMYGFDP +++ R
Sbjct: 1939 ARDNKMGREVYGDDDTIEHFFGDAYTKKGKSKGRTRGIGHKNRKFINMYGFDPEDFSAVR 1998
Query: 3656 YVDPLTGYTLDESALTEVKLVQEHFGKIRHELRMREELEPEAIDYHKKIEVYFVKDLAKQ 3477
+VDPLTG TLD++ T++ LVQ+HFG IR +L +EL+P I +K I+ Y++ + +
Sbjct: 1999 FVDPLTGATLDDNPFTDITLVQKHFGDIRMDLLGEDELDPNEIRVNKTIQAYYMNNKTGK 2058
Query: 3476 VLKIDMDPHNPFEIGRNTESIAGYPERKGELRQMGKPTLMSPTLLPAQREYEFDEPVVFE 3297
LK+D+ PH P ++ +IAG+PER+ ELRQ GK +S +P PV E
Sbjct: 2059 ALKVDLTPHIPLKVCDLHATIAGFPERENELRQTGKAQPISIDEVPRANNELI--PVDHE 2116
Query: 3296 SKATFYGMRDYNPISSSVCLLANESDGYEREIHGIGYGSMIITNQHLFQHNNGTLSVQSH 3117
S + F G+RDYNPIS+++C L N SDG ++G+G+G +I+TN+HLF+ NNG L ++S
Sbjct: 2117 SNSMFRGLRDYNPISNNICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNGELVIKSR 2176
Query: 3116 RGKFFIPNTTQLKMYPFPGRDLLIIQMPKDFPPFPQKLKFRSPVSGDRVCMIGSNFQDKY 2937
G+F I NTTQL + P P RDLL+I++PKD PPFPQKL FR P G+R+CM+GSNFQ K
Sbjct: 2177 HGEFVIKNTTQLHLLPIPDRDLLLIRLPKDVPPFPQKLGFRQPEKGERICMVGSNFQTKS 2236
Query: 2936 XXXXXXXXXXXSQKDESVFYRHWISTKTGHCGLPMVSVKDGYILGIHSLTSKDDASGFLI 2757
+ S F++HWISTK G CG PMVS KDG ILG+HSL + ++ +
Sbjct: 2237 ITSIVSETSTIMPVENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYFA 2296
Query: 2756 SFPQDMEKNYLQNAEQVQWTKKWRLNVDLIDWGTLNLTTNKPDNLFRLSKDLLGLMAEPV 2577
+FP D + YL E +W K W+ N I WG+LN+ ++P LF++SK + L + V
Sbjct: 2297 AFPDDFAEKYLHTIEAHEWVKHWKYNTSAISWGSLNIQASQPSGLFKVSKLISDLDSTAV 2356
Query: 2576 EFQAHENRWLYERLGGNLHAVARTTNQLVTKHVVKGKCLLFATYLETNDEAKQFFQPLMG 2397
Q +NRW++E+L GNL AVA +QLVTKH VKGKC +F YL+ +DEA+++FQP++G
Sbjct: 2357 YAQTQQNRWMFEQLTGNLKAVAHCPSQLVTKHTVKGKCQMFDLYLKLHDEAREYFQPMLG 2416
Query: 2396 AYQKSRLNKEAYIKDLFKYNSPTTIGVLEPDKFERAEALVMRLFERVGFSECEYVTCPDA 2217
YQKS+LN+EAY KDL KY +P G ++ D FE+ +V+ GF C YVT +
Sbjct: 2417 QYQKSKLNREAYAKDLLKYATPIEAGNIDCDLFEKTVEIVISDLRGYGFETCNYVTDEND 2476
Query: 2216 IFSALNMKAAVGALYHGKKKDYFDSFSEADKAQILKDSCYRLYAGKMGVWNGSLKAELRP 2037
IF ALNMK+AVGALY GKKKDYF F+ K +ILK SC RL+ GKMGVWNGSLKAELRP
Sbjct: 2477 IFEALNMKSAVGALYKGKKKDYFAEFTPEMKEEILKQSCERLFLGKMGVWNGSLKAELRP 2536
Query: 2036 LEKVQANKTRSFTAAPIDTLLGGKVCVDDFNNQFYSLNLKAPWSVGMTKFYGGWNELMTS 1857
LEKV+ANKTR+FTAAP+DTLLGGKVCVDDFNNQFY NL+APWSVGMTKFY GWN L+ S
Sbjct: 2537 LEKVEANKTRTFTAAPLDTLLGGKVCVDDFNNQFYDHNLRAPWSVGMTKFYCGWNRLLES 2596
Query: 1856 LPDGWIYCDADGSQFDSSLTPYLINAVLNLRLHFMEEWDIGEKMLENLYTEIVYTPIATP 1677
LPDGW+YCDADGSQFDSSL+PYLINAVLN+RL FMEEWD+GE ML NLYTEIVYTPI+TP
Sbjct: 2597 LPDGWVYCDADGSQFDSSLSPYLINAVLNIRLGFMEEWDVGEVMLRNLYTEIVYTPISTP 2656
Query: 1676 DGTVIKKYKGNNSGQPSTVVDNTIMVILAMYYSGEVYN-PTLSLDDYCKFFVNGDDLLIA 1500
DGT++KK+KGNNSGQPSTVVDNT+MVILA+ YS + P+ D +FFVNGDDLL++
Sbjct: 2657 DGTLVKKFKGNNSGQPSTVVDNTLMVILAVNYSLKKSGIPSELRDSIIRFFVNGDDLLLS 2716
Query: 1499 VHPNHVDFLQDLQNSFQHLGLKYTFTSRYHTREELWFMSHKAIKVDGVYIPKLEEERIVS 1320
VHP + L + ++F+ LGLKYTF SR + +LWFMSH+ + +G++IPKLE ERIVS
Sbjct: 2717 VHPEYEYILDTMADNFRELGLKYTFDSRTREKGDLWFMSHQGHRREGIWIPKLEPERIVS 2776
Query: 1319 ILEWDRAVLPEHRLEAICASMIEAWGYPSLLHQIRKFYYWVLEQAPYSVLSSEGKAPYIS 1140
ILEWDR+ P HRLEAICA+MIE+WGY L H+IRKFY W++EQAP+S L+ EGKAPYI+
Sbjct: 2777 ILEWDRSKEPCHRLEAICAAMIESWGYDKLTHEIRKFYAWMIEQAPFSSLAQEGKAPYIA 2836
Query: 1139 EVALKHLYLN-QIEKSELERYMDGLDWSSTQGIEE-VEFQANDTYDAG-----KKTDKPE 981
E AL+ LYL+ + + +L +Y+ + G E V QA +T DAG K+ +K +
Sbjct: 2837 ETALRKLYLDKEPAQEDLTQYLQAIFEDYEDGAEVCVYHQAGETLDAGLTEEQKQAEKEK 2896
Query: 980 DVEKNHEKE---NKELTPPPNQEAGPSKG-RDKDVDVGTKGTFQVPRLKSIGSKMTLPRV 813
+ EKE K+L ++ +G RD++V+ GT GTF VPRLKS+ SKM +PR
Sbjct: 2897 KEREKAEKERERQKQLALKKGKDVAQEEGKRDREVNAGTSGTFSVPRLKSLTSKMRVPRY 2956
Query: 812 GGRVIVNLEHLLTYEPEQVDLSNTRATRSQFDSWYNGIKGAYDLNDSSMGVVLNGLMVWC 633
RV +NL+HL+ Y PEQ DLSNTR+TR QFD+W+ G+ Y+L + M ++LNGLMVWC
Sbjct: 2957 EKRVALNLDHLILYTPEQTDLSNTRSTRKQFDTWFEGVMADYELTEDKMQIILNGLMVWC 3016
Query: 632 IENGTSPNIHGHWTMMDGDEQVEYPLRPVVEMAQPTLRQIMSHFSALAEAYIEKRNATKP 453
IENGTSPNI+G W MMDGD+QVE+P++P+++ A+PT RQIM+HFS +AEAYIEKRN +P
Sbjct: 3017 IENGTSPNINGMWVMMDGDDQVEFPIKPLIDHAKPTFRQIMAHFSDVAEAYIEKRNQDRP 3076
Query: 452 YMPRYGLLRNLRDLSLARYAFDFYEVTARTPVRAREAHMQMKAAALRNSDNKMFGLDGNS 273
YMPRYGL RNL D+SLARYAFDFYE+T+RTP+RAREAH+QMKAAALR ++N +FGLDGN
Sbjct: 3077 YMPRYGLQRNLTDMSLARYAFDFYEMTSRTPIRAREAHIQMKAAALRGANNNLFGLDGNV 3136
Query: 272 GDKEEDTERHTANDVNRNMHHLMGVR 195
G E+TERHT DVNRNMH+L+GV+
Sbjct: 3137 GTTVENTERHTTEDVNRNMHNLLGVK 3162
>dbj|BAM99241.1| polyprotein [Turnip mosaic virus]
Length = 3164
Score = 2957 bits (7666), Expect = 0.0
Identities = 1526/3033 (50%), Positives = 2038/3033 (67%), Gaps = 41/3033 (1%)
Frame = -2
Query: 9170 ARAVARLDLLERETTHKWLT-QWEAGAQSVEAIVEPSAPRAQTVSEYRRPLAIDDKPSLA 8994
+RA+ + ER + K + +WE PSA + + E R + PS
Sbjct: 152 SRAMKQKRARERRNSQKPIVLKWEPKLSETSIGGGPSASKLEA-EEARTKWPLHKTPSAK 210
Query: 8993 KRTKRVVHTPIRYSVENIIRAIANQNKNCKLDLEIISTKKATRARHTMWRNRLYVKAQTK 8814
K+T V ++ ++R++ K ++E +K+ + + + Q
Sbjct: 211 KKTVHRVCRMNNQGIDMLMRSLIKIFKAKSANIEYTG-RKSIKIDFVRKEQIKFARVQVA 269
Query: 8813 HELGVRHKRDILVCEWGRQVLRLLVSKTAGNRAHDANMFTQGSSGIIIMSHCLSGNVSAS 8634
H LG R +RD+L + + +L + + + M G SG+I+ + L+ S S
Sbjct: 270 HLLGKRAQRDLLTGVEENRFIDILSGYSGNKKVINPGMICAGWSGVIVRNGILTQKQSRS 329
Query: 8633 RGNLFIVRGRDGEKLYDSQSVVTSHVASRMRHYSA-GERFWKGYGRGFNSH-TPSVGHQC 8460
F++RG KLYD++ VT ++ +M H+SA G FWKG+ R F ++ + + H C
Sbjct: 330 PSRAFVIRGEHEGKLYDARIKVTKMMSHKMVHFSAAGANFWKGFDRCFLAYRSDNREHTC 389
Query: 8459 RSDLDVEECGYVAAMATQVLFPCGHITCQQCADNFVSCSKNDLKEEYGTRIQGLIDEVQN 8280
+ LDV ECG VAA+ +FPCG ITC C + R+ L + +++
Sbjct: 390 YTGLDVTECGEVAALMCLAMFPCGKITCPDCVTDSELSQGQASGPSMKNRLVQLREVIKS 449
Query: 8279 KHPKFAHVVKFLSLFNDYLRFSNENIRQFSEAKRIIGDRKEAPFQQLAALNDLLIKVGEC 8100
+P+F H V+ L + L +NEN + F+E + + ++A F LN +LIK
Sbjct: 450 SYPRFKHAVQILDRYEQSLSSANENYQDFAEIQSLTDGMEKAAFPHANKLNAILIKGATA 509
Query: 8099 TSEEAALGTANLLELVRFQKNRTDNISGTSLTHFRNKVSSKIHVNLDLMCDNQLDDDGNF 7920
T EE T +LLE+ R+ KNRT+NI SL FRNK+S K H+N LMCDNQLD +GNF
Sbjct: 510 TGEEYEQATKHLLEITRYMKNRTENIEKGSLKSFRNKISQKAHINPTLMCDNQLDKNGNF 569
Query: 7919 KWRQRGFHAKRMFDNFYEVVNPSKGYDSFIVRTNPNGVRKTAIGNLVISTNMATFREQMR 7740
W +RG+HAKR F N++E+++P KGY + R PNG RK AIG L++ TN REQMR
Sbjct: 570 IWGERGYHAKRFFSNYFEIIDPKKGYAQYETRVVPNGSRKLAIGKLIVPTNFEVLREQMR 629
Query: 7739 GEPVEPQALSLACTSKLKGSYVYPCCCVTTDTGKPIESEMLAPTKDHLVIGNTGDSKFVT 7560
GEPVEP +++ C SK +G +V+ CCCVTT++G P+ SE+ PTK HLVIGN+GD K+V
Sbjct: 630 GEPVEPHPITVECVSKSQGDFVHACCCVTTESGDPVLSEIKMPTKHHLVIGNSGDPKYVD 689
Query: 7559 VPKILEDGMYVAKEGYCYVNIFVAMLINVSDVQAKDYTRRVRDYAIPTLGKWPTLINLAT 7380
+P+I E+ MY+AKEGYCY+NIF+AML+NV + QAK++T+ VRD + LGKWP+L+++AT
Sbjct: 690 LPEIEENKMYIAKEGYCYINIFLAMLVNVKESQAKEFTKVVRDKLVGELGKWPSLLDVAT 749
Query: 7379 VCHFLTILYPDIKSAELPRILVDHKTCTMHVVDSFGSLSTGYHILKANTVGQLIKFANDE 7200
C+FL + YPD+ +AELPR+LVDHKT +HVVDS+GSLSTGYHILK NTV QLIKF
Sbjct: 750 ACYFLKVFYPDVANAELPRMLVDHKTKIIHVVDSYGSLSTGYHILKTNTVEQLIKFTRHN 809
Query: 7199 LESDMKLYAVGG-----LHGXXXXXXXXXXXVIMLARGIYRPKELKSILEHDPTLLVYSL 7035
LES +K Y VGG +HG L +G+YRPK+LK + +P L +Y+L
Sbjct: 810 LESSLKHYRVGGTKWEDVHGTKNIDDPQWCIK-RLVKGVYRPKQLKEDMLANPFLPLYAL 868
Query: 7034 LSPCVLIAMYKNRTFELAVSEWLQKDTEVASLCNQLEVVARKISVSKVLAVQQQLIAEQA 6855
LSP V++A Y + + E ++ +++ D+ VA L L+ +A+K+S S+ + Q Q+I
Sbjct: 869 LSPGVILAFYNSGSLEHLMNHYIRADSNVAVLLVVLKSLAKKVSTSQSVLAQLQVIERSL 928
Query: 6854 SQMIRSVERSQAHSP---SRHFVRLLLARIIENQQMDKELIASGFTQLRLDGDLMREKKF 6684
+++ + R+ SP + L ++ + + EL+ G+T LR + EK +
Sbjct: 929 PEIVEA--RANITSPEGAASQACNRFLGMLLHRSEPNDELLDGGYTILRDHSIAILEKNY 986
Query: 6683 LEALAHSWRDLSWSERCTSIWRSRKHSQSGTGPSKSATSDDLNVTWRERFNSLRGGVAET 6504
L+ L +W +LSW ERC + S K + + DL + E S +
Sbjct: 987 LQILDEAWSELSWLERCAIRYYSSKQAIFSQKDLPMQSDVDLGGRYSESVISSYEWSKQR 1046
Query: 6503 IRDGRSKIGATIKRKSNELVGKVTCKLLLTSRLLCPDIFRMVNVLTVMYLLLQIFTGVRG 6324
++ S + + + + KV+ + T L PD+FR +NVL + LLL I +
Sbjct: 1047 MKKLYSGLCNKTRNSMSCVSNKVSSSICKTLNYLVPDVFRFINVLICISLLLTIASETNR 1106
Query: 6323 HIQAHQQLKI-----EKQRLEDDLNFDMVMRLYNIFYERYPTNAPSLYEFEQYLQKTNQS 6159
+ + ++LK+ E++++E +L F ++ P+L EF Y+ +
Sbjct: 1107 IVTSQRKLKLDVVEAERKKIEWELAF------HHSILTHSANQHPTLDEFVAYINEKAPH 1160
Query: 6158 AYQYYMKVCGPDADDEKVEFQAKGACEIELERTVAFVALIMMMFDAERSDCVYKVLSKLR 5979
+Y + +++ V QAK E ELER +AF+AL++MMFDAERSDCV K+L+KL+
Sbjct: 1161 LSEYI------EPEEKAVGHQAKRQSEQELERIIAFIALVLMMFDAERSDCVTKILNKLK 1214
Query: 5978 GLMAPIGTESVAFQSIDTVKEILGETKMAIDIEIDTENHQMNRLKGT-TFSDWWQNQISQ 5802
GL++ + +V Q+++ +++ L E + +D E+ + + +L TF+ WW +Q+S+
Sbjct: 1215 GLVSTV-EPTVYHQALNDIEDDLSERNLFVDFELSNDGELIQQLPAEKTFASWWNHQLSR 1273
Query: 5801 GRTIPHYRTEGHFMEFTRANAQTVANSIAHSEHNDLLIMGAVGSGKSTGLPFYLSKKGKV 5622
G TIPHYRTEG FM FTRA A +A IAH D+L+MGAVGSGKSTGLP++LS+KG V
Sbjct: 1274 GYTIPHYRTEGKFMTFTRATATEIAGRIAHESDKDILLMGAVGSGKSTGLPYHLSRKGNV 1333
Query: 5621 LIIEPTKPLAENVHKQLQGNPFMTQATLKMRGCNVFGSAPIHVQTSGYALHYFAHNVAQL 5442
L++EPT+PLAENVHKQL PF TL+MRG FGSAPI V TSG+AL+YFA+N A++
Sbjct: 1334 LLLEPTRPLAENVHKQLSQAPFHQNTTLRMRGLTAFGSAPISVMTSGFALNYFANNRARI 1393
Query: 5441 AEFKFIIFDECHVHDSAAMAFRCLLSEYDYGGKILKVSATPPGREAVFSTQHAVQVKMEE 5262
EF F+IFDECHVHD++AMA RCLL + DY GKI+KVSATPPGRE FSTQ+ V + E+
Sbjct: 1394 EEFDFVIFDECHVHDASAMAMRCLLHDCDYSGKIIKVSATPPGREVEFSTQYPVTISTED 1453
Query: 5261 NLTFQQFVQMQGTGANGDVIQSGDNILVYVSSYNEVDSLSKLLLDAKHKVTKVDGRTMKM 5082
L+FQ FV QG+G+N DVI GDNILVYV+SY+EVD+LSKLL + KVTKVDGRTMK+
Sbjct: 1454 TLSFQNFVNAQGSGSNCDVISKGDNILVYVASYSEVDTLSKLLTEKDFKVTKVDGRTMKV 1513
Query: 5081 GQVEIPTSGTRDKKHFIVATNIIENGVTLDIDVVVDFGMKVVPELDSDNRLIRYTKVSIS 4902
G +EI TSGT KKHFIVATNIIENGVTLDIDVV DFG KV+P LD+DNR++ TK SI+
Sbjct: 1514 GNIEITTSGTPSKKHFIVATNIIENGVTLDIDVVADFGTKVLPYLDTDNRMLSTTKTSIN 1573
Query: 4901 YGERIQRLGRVGRNKEGTALRIGATEKGLSAVPNIVATEAAFYSFAYGLPVMTNGVAVGV 4722
YGERIQRLGRVGR+K G ALRIG TEKGLS VP+ +ATEAA F YGLPV+TN V+ +
Sbjct: 1574 YGERIQRLGRVGRHKPGHALRIGHTEKGLSEVPSCIATEAALKCFTYGLPVITNNVSTSI 1633
Query: 4721 VANCTVPQARTVLHFELPIFYMLHLVRFDGSMHPALHACLKGFKLRDSEIILNKMAIPNS 4542
+ N TV QART+ FE+ FY +VR+DGSMHP +HA LK FKLRDSEI+LNK+AIPN
Sbjct: 1634 LGNVTVKQARTMSVFEITPFYTSQVVRYDGSMHPQVHALLKRFKLRDSEIVLNKLAIPNR 1693
Query: 4541 GVKQWLTAGEYSRIGARNSVDEFTRIPFFSKDVPDKIHEQVWEAVVTFKRDAGFGKIQSA 4362
GV WLTA EY+R+GA RIPF +D+P+K+H ++W+ + FK DAGFG++ SA
Sbjct: 1694 GVNAWLTASEYARLGANVEDRRDVRIPFMCRDIPEKLHLEMWDEITKFKGDAGFGRLSSA 1753
Query: 4361 SACKVAYTLQTDAASITRTVCIIEELIKNEVKKQEYFQT-ASGIDCGSGFSLVSLTNAIR 4185
SA KVAYTLQTD SI RT+ II+ LI E +KQEYF+T S S FSL S+TNAI+
Sbjct: 1754 SASKVAYTLQTDVNSIQRTITIIDTLIAEERRKQEYFKTVTSNCVSSSSFSLQSITNAIK 1813
Query: 4184 SRHMSNHTAENIAILEAAKGQLEEFRNLGIDPTTRTVTD---------FGALECVQFQSA 4032
SR M +HT ENI+ILE AK QL EFRNL D + T TD +GALE V QS
Sbjct: 1814 SRIMKDHTCENISILEGAKSQLLEFRNLNADHSFVTKTDGISRSFMSEYGALEAVHHQST 1873
Query: 4031 DGISKQLGLKGKWNKPLITKDILVAGFTMFGGMWMIYNYLKRAITTNVEFQASGKRQNQK 3852
+ +SK L LKGKWNK LIT+D+LV + GG+WMI L+ IT V +A GKRQ QK
Sbjct: 1874 NDMSKFLKLKGKWNKTLITRDVLVICGVLGGGIWMILQRLQSGITEPVIHEAKGKRQRQK 1933
Query: 3851 RRFQIARNNKHAFEVNPDETDVEHYFGEAYGKKAQGKGRTRGMGAKSRRFYNMYGFDPAE 3672
+F+ AR+NK EV D+ +EHYFG+AY KK + KGRTRG+G K+R+F NMYGFDP +
Sbjct: 1934 LKFRNARDNKMGREVYGDDDTIEHYFGDAYTKKGKSKGRTRGLGHKNRKFINMYGFDPED 1993
Query: 3671 YTFARYVDPLTGYTLDESALTEVKLVQEHFGKIRHELRMREELEPEAIDYHKKIEVYFVK 3492
++ R+VDPLTG TLDES T++ LVQ+HFG IR +L +E+EP+A+ +HK I+ Y++
Sbjct: 1994 FSAVRFVDPLTGATLDESPFTDITLVQKHFGDIRTDLLEEDEIEPQALQFHKTIQAYYMN 2053
Query: 3491 DLAKQVLKIDMDPHNPFEIGRNTESIAGYPERKGELRQMGKPTLMSPTLLP-AQREYEFD 3315
+ + LK+D+ PH P ++ +IAG+PER+ ELRQ GK +S + +P A E
Sbjct: 2054 NKTGKALKVDLTPHIPLKVCDLHATIAGFPEREFELRQTGKAQPISISEVPKANAEL--- 2110
Query: 3314 EPVVFESKATFYGMRDYNPISSSVCLLANESDGYEREIHGIGYGSMIITNQHLFQHNNGT 3135
PV ES + F G+RDYNPIS+++C L N SDG ++G+G+G +I+TN+HLF+ NNG
Sbjct: 2111 VPVDHESSSMFRGLRDYNPISNNICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNGE 2170
Query: 3134 LSVQSHRGKFFIPNTTQLKMYPFPGRDLLIIQMPKDFPPFPQKLKFRSPVSGDRVCMIGS 2955
L ++S G+F I NTTQL + P P RDLL+I++PKD PPFPQKL FR P G+R+CM+GS
Sbjct: 2171 LLIKSRHGEFVIRNTTQLHLLPIPDRDLLLIRLPKDIPPFPQKLGFRQPEKGERICMVGS 2230
Query: 2954 NFQDKYXXXXXXXXXXXSQKDESVFYRHWISTKTGHCGLPMVSVKDGYILGIHSLTSKDD 2775
NFQ K + S F++HWISTK G CG PMVS KDG ILG+HSL + +
Sbjct: 2231 NFQTKSITSVISETSTVMPVENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQN 2290
Query: 2774 ASGFLISFPQDMEKNYLQNAEQVQWTKKWRLNVDLIDWGTLNLTTNKPDNLFRLSKDLLG 2595
+ + +FP D + YL E +W K W+ N I WG+LN+ +P LF++SK +
Sbjct: 2291 SINYFAAFPDDFAEKYLHTIETHEWVKHWKYNTSGISWGSLNIQAAQPAGLFKVSKLISD 2350
Query: 2594 LMAEPVEFQAHENRWLYERLGGNLHAVARTTNQLVTKHVVKGKCLLFATYLETNDEAKQF 2415
L + V Q +NRW+YE+L GNL A+A +QLVTKH VKGKC +F YL+ +DEA+++
Sbjct: 2351 LDSTAVYAQTQQNRWMYEQLTGNLKAIAHCPSQLVTKHTVKGKCQMFDLYLKLHDEAREY 2410
Query: 2414 FQPLMGAYQKSRLNKEAYIKDLFKYNSPTTIGVLEPDKFERAEALVMRLFERVGFSECEY 2235
FQP++G YQKSRLN+EAY KDL KY +P G ++ D FE+ +V+ GF C Y
Sbjct: 2411 FQPMLGQYQKSRLNREAYAKDLLKYATPIEAGNIDCDLFEKTVDIVISDLWGYGFETCNY 2470
Query: 2234 VTCPDAIFSALNMKAAVGALYHGKKKDYFDSFSEADKAQILKDSCYRLYAGKMGVWNGSL 2055
VT IF ALNMK+AVGALY GKKKDYF F+ K +ILK SC RL+ GKMGVWNGSL
Sbjct: 2471 VTDETDIFEALNMKSAVGALYKGKKKDYFAEFTPEMKEEILKQSCERLFLGKMGVWNGSL 2530
Query: 2054 KAELRPLEKVQANKTRSFTAAPIDTLLGGKVCVDDFNNQFYSLNLKAPWSVGMTKFYGGW 1875
KAELRPLEKV+ANKTR+FTAAP+DTLLGGKVCVDDFNNQFY NL APWSVGMTKFY GW
Sbjct: 2531 KAELRPLEKVEANKTRTFTAAPLDTLLGGKVCVDDFNNQFYDHNLSAPWSVGMTKFYCGW 2590
Query: 1874 NELMTSLPDGWIYCDADGSQFDSSLTPYLINAVLNLRLHFMEEWDIGEKMLENLYTEIVY 1695
+ L+ SLPDGW+YCDADGSQFDSSL+PYLINAVLN+RL FMEEWD+GE ML NLYTEIVY
Sbjct: 2591 DRLLESLPDGWVYCDADGSQFDSSLSPYLINAVLNIRLEFMEEWDVGEIMLRNLYTEIVY 2650
Query: 1694 TPIATPDGTVIKKYKGNNSGQPSTVVDNTIMVILAMYYSGEVYN-PTLSLDDYCKFFVNG 1518
TPI+TPDGT++KK+KGNNSGQPSTVVDNT+MVILA+ YS + P+ D +FFVNG
Sbjct: 2651 TPISTPDGTLVKKFKGNNSGQPSTVVDNTLMVILAVNYSLKKSGIPSDLRDSIVRFFVNG 2710
Query: 1517 DDLLIAVHPNHVDFLQDLQNSFQHLGLKYTFTSRYHTREELWFMSHKAIKVDGVYIPKLE 1338
DDLL++VHP + L + ++F+ LGLKYTF SR + +LWFMSH+ K +G++IPKLE
Sbjct: 2711 DDLLLSVHPKYEYILDTMADNFRELGLKYTFDSRSREKGDLWFMSHQGHKREGIWIPKLE 2770
Query: 1337 EERIVSILEWDRAVLPEHRLEAICASMIEAWGYPSLLHQIRKFYYWVLEQAPYSVLSSEG 1158
ERIVSILEWDR+ P HRLEAICA+MIE+WGY L H+IRKFY WV+EQAP++ L+ EG
Sbjct: 2771 PERIVSILEWDRSKEPCHRLEAICAAMIESWGYDKLTHEIRKFYAWVIEQAPFNSLAQEG 2830
Query: 1157 KAPYISEVALKHLYLN-QIEKSELERYMDGLDWSSTQGIEE-VEFQANDTYDAG------ 1002
KAPYI+E AL+ LYL+ + + +L +Y++ + G E V QA +T DAG
Sbjct: 2831 KAPYIAETALRKLYLDKEPSQEDLTQYLNAIFEDYEDGTEVCVYHQAGETLDAGLTEEQK 2890
Query: 1001 ---KKTDKPEDVEKNHEKENKELTPPPNQEAGPSKG-RDKDVDVGTKGTFQVPRLKSIGS 834
K+ E EK EK+ K+L + + +G RDK+V+ GT GTF VPRLKS+ S
Sbjct: 2891 QAEKERKDREKAEKEREKQ-KQLALKKGKNSSQEEGERDKEVNAGTSGTFSVPRLKSLAS 2949
Query: 833 KMTLPRVGGRVIVNLEHLLTYEPEQVDLSNTRATRSQFDSWYNGIKGAYDLNDSSMGVVL 654
KM +P+ R+ +NL+HL+ Y PEQ DLSNTR+T+ QF++W+ G+ Y+L + M ++L
Sbjct: 2950 KMRVPKYEKRLALNLDHLILYTPEQTDLSNTRSTQKQFNTWFEGVMADYELTEDKMQIIL 3009
Query: 653 NGLMVWCIENGTSPNIHGHWTMMDGDEQVEYPLRPVVEMAQPTLRQIMSHFSALAEAYIE 474
NGLMVWCIENGTSPNI+G W MMDGD+QVE+P++P+++ A+PT RQIM+HFS +AEAYIE
Sbjct: 3010 NGLMVWCIENGTSPNINGMWVMMDGDDQVEFPIKPLIDHAKPTFRQIMAHFSDVAEAYIE 3069
Query: 473 KRNATKPYMPRYGLLRNLRDLSLARYAFDFYEVTARTPVRAREAHMQMKAAALRNSDNKM 294
KRN +PYMPRYGL RNL D+SLARYAFDFYE+T+RTP+RAREAH+QMKAAALR ++N +
Sbjct: 3070 KRNQDRPYMPRYGLQRNLTDMSLARYAFDFYEMTSRTPIRAREAHIQMKAAALRGANNNL 3129
Query: 293 FGLDGNSGDKEEDTERHTANDVNRNMHHLMGVR 195
FGLDGN G E+TERHT DVNRNMH+L+GV+
Sbjct: 3130 FGLDGNVGTTVENTERHTTEDVNRNMHNLLGVK 3162
>dbj|BAQ56296.1| polyprotein [Turnip mosaic virus]
Length = 3164
Score = 2957 bits (7665), Expect = 0.0
Identities = 1509/2966 (50%), Positives = 2009/2966 (67%), Gaps = 36/2966 (1%)
Frame = -2
Query: 8984 KRVVHTPIRYS---VENIIRAIANQNKNCKLDLEIISTKKATRARHTMWRNRLYVKAQTK 8814
KR+VH + S V+ +IR++ K ++E I KK+ + + + Q
Sbjct: 211 KRMVHKTCKMSDQGVDMLIRSLVKIFKAKSANIEYIG-KKSIKVDFIRKERTKFARIQVA 269
Query: 8813 HELGVRHKRDILVCEWGRQVLRLLVSKTAGNRAHDANMFTQGSSGIIIMSHCLSGNVSAS 8634
H LG R +RD+L + +L + + + G SG+I+ + L+ S S
Sbjct: 270 HLLGKRAQRDLLAGVEENHFIDILSEYSGNKTVINPGVVCAGWSGVIVKNEILTQKRSGS 329
Query: 8633 RGNLFIVRGRDGEKLYDSQSVVTSHVASRMRHYSA-GERFWKGYGRGFNSHTPSVG-HQC 8460
N F++RG KLYD++ +T ++ ++ H+SA G FWKG+ R F ++ S H C
Sbjct: 330 PSNAFVIRGEHEGKLYDARVKITKTMSHKIVHFSAAGANFWKGFDRCFLAYRSSDREHTC 389
Query: 8459 RSDLDVEECGYVAAMATQVLFPCGHITCQQCADNFVSCSKNDLKEEYGTRIQGLIDEVQN 8280
+ LDV ECG VAA+ +FPCG ITC C + +I L + +++
Sbjct: 390 YTGLDVTECGEVAALMCLAMFPCGKITCPDCVTDSEMSQGQASAPNMRHKIVQLREIIKS 449
Query: 8279 KHPKFAHVVKFLSLFNDYLRFSNENIRQFSEAKRIIGDRKEAPFQQLAALNDLLIKVGEC 8100
+P+F H V+ L + L N N + F+E + + ++A F LN +LIK
Sbjct: 450 SYPRFKHAVQILDRYEQSLHGENSNYQDFAEIQSLTDGMEKAAFPHANKLNAILIKGSTA 509
Query: 8099 TSEEAALGTANLLELVRFQKNRTDNISGTSLTHFRNKVSSKIHVNLDLMCDNQLDDDGNF 7920
T EE T +LLE+ R+ KNRT+NI SL FRNK+S K H+N LMCDNQLD +GNF
Sbjct: 510 TGEEYGQATKHLLEITRYMKNRTENIEKGSLKSFRNKISQKAHINPTLMCDNQLDKNGNF 569
Query: 7919 KWRQRGFHAKRMFDNFYEVVNPSKGYDSFIVRTNPNGVRKTAIGNLVISTNMATFREQMR 7740
W +RG+HAKR F N++E+++P KGY + R PNG RK AIG L++ TN REQMR
Sbjct: 570 IWGERGYHAKRFFSNYFEIIDPKKGYTQYETRIVPNGSRKLAIGKLIVPTNFEVLREQMR 629
Query: 7739 GEPVEPQALSLACTSKLKGSYVYPCCCVTTDTGKPIESEMLAPTKDHLVIGNTGDSKFVT 7560
GEPVEP +++ C SK +G +V+ CCCVTT++G P+ SE+ PTK HLVIGN+GD K+V
Sbjct: 630 GEPVEPHPITVECVSKSQGDFVHACCCVTTESGDPVLSEIKMPTKHHLVIGNSGDPKYVD 689
Query: 7559 VPKILEDGMYVAKEGYCYVNIFVAMLINVSDVQAKDYTRRVRDYAIPTLGKWPTLINLAT 7380
+P+I E+ MY+AKEGYCY+NIF+AML+NV + QAK++T+ VRD + LGKWPTL++++T
Sbjct: 690 LPEIEENKMYIAKEGYCYINIFLAMLVNVKESQAKEFTKVVRDKLVGELGKWPTLLDIST 749
Query: 7379 VCHFLTILYPDIKSAELPRILVDHKTCTMHVVDSFGSLSTGYHILKANTVGQLIKFANDE 7200
C+FL + YPD+ +AELPR+LVDHKT +HVVDS+GSLSTGYHILK NTV QLIKF
Sbjct: 750 ACYFLKVFYPDVANAELPRMLVDHKTKIIHVVDSYGSLSTGYHILKTNTVEQLIKFTRHN 809
Query: 7199 LESDMKLYAVGGL-----HGXXXXXXXXXXXVIMLARGIYRPKELKSILEHDPTLLVYSL 7035
LES +K Y VGG HG L +G+YRPK+LK + +P L +Y+L
Sbjct: 810 LESSLKHYRVGGTRWEDAHGTNNIDNPQWCIR-RLIKGVYRPKQLKEDMLTNPFLPLYAL 868
Query: 7034 LSPCVLIAMYKNRTFELAVSEWLQKDTEVASLCNQLEVVARKISVSKVLAVQQQLIAEQA 6855
LSP V++A Y + + E ++ +++ D+ VA L L+ +ARK+S S+ + Q Q+I
Sbjct: 869 LSPGVILAFYNSGSLEYLMNHYIRADSSVAVLLVVLQSLARKVSASQSVLAQLQIIERSL 928
Query: 6854 SQMIRS-VERSQAHSPSRHFVRLLLARIIENQQMDKELIASGFTQLRLDGDLMREKKFLE 6678
+++ + + + + L +I + + EL G+T LR + EK +L+
Sbjct: 929 PELVEARANVTGSDGAASQACNKFLGMLIHMSEPNNELADGGYTILRDHSITILEKSYLQ 988
Query: 6677 ALAHSWRDLSWSERCTSIWRSRKHSQSGTGPSKSATSDDLNVTWRERFNSLRGGVAETIR 6498
L +W +LSWSERC + S K + + DL + E S + ++
Sbjct: 989 ILDEAWSELSWSERCAIKYYSSKQAIFSQKDLPVQSGVDLGGRYSESVISSYEWSKQRVK 1048
Query: 6497 DGRSKIGATIKRKSNELVGKVTCKLLLTSRLLCPDIFRMVNVLTVMYLLLQIFTGVRGHI 6318
S + + + + GKV+ + T L PD+FR +NVL + LL+ I + +
Sbjct: 1049 KLYSSMCNKTRNSVSWVGGKVSSSVCRTINYLVPDVFRFINVLICISLLITIASEANRIV 1108
Query: 6317 QAHQQLKIEKQRLEDDLNFDMVMRLYNIFYERYPTNAPSLYEFEQYLQKTNQSAYQYYMK 6138
A ++LK++ + E + + ++ + P++ EF Y+ ++
Sbjct: 1109 TAQRRLKLDVEETERR-KMEWELAFHHAILTQSAGQHPTIDEFRAYIADKAPHLSEHI-- 1165
Query: 6137 VCGPDADDEKVEFQAKGACEIELERTVAFVALIMMMFDAERSDCVYKVLSKLRGLMAPIG 5958
+ +++ V QAK E ELER +AFVAL++MMFDAERSDCV K+L+KL+GL+A +
Sbjct: 1166 ----EPEEKAVVHQAKRQSEQELERIIAFVALVLMMFDAERSDCVTKILNKLKGLVATV- 1220
Query: 5957 TESVAFQSIDTVKEILGETKMAIDIEIDTENHQMNRLKGT-TFSDWWQNQISQGRTIPHY 5781
+V Q+++ +++ L E + +D E+ ++ + +L TF+ WW +Q+S+G TIPHY
Sbjct: 1221 EPTVYHQTLNDIEDDLSERNLFVDFELSSDGDILQQLPAEKTFASWWSHQLSRGFTIPHY 1280
Query: 5780 RTEGHFMEFTRANAQTVANSIAHSEHNDLLIMGAVGSGKSTGLPFYLSKKGKVLIIEPTK 5601
RTEG FM FTRA A VA IAH D+L+MGAVGSGKSTGLP++LS+KG VL++EPT+
Sbjct: 1281 RTEGKFMTFTRATATEVAGKIAHESDKDILLMGAVGSGKSTGLPYHLSRKGNVLLLEPTR 1340
Query: 5600 PLAENVHKQLQGNPFMTQATLKMRGCNVFGSAPIHVQTSGYALHYFAHNVAQLAEFKFII 5421
PLAENVHKQL PF TL+MRG FGSAPI V TSG+AL+YFA+N ++ EF F+I
Sbjct: 1341 PLAENVHKQLSQAPFHQNTTLRMRGLTAFGSAPISVMTSGFALNYFANNRMRIEEFDFVI 1400
Query: 5420 FDECHVHDSAAMAFRCLLSEYDYGGKILKVSATPPGREAVFSTQHAVQVKMEENLTFQQF 5241
FDECHVHD+ AMA RCLL E DY GKI+KVSATPPGRE FSTQ+ V + E+ L+FQ F
Sbjct: 1401 FDECHVHDANAMAMRCLLHECDYSGKIIKVSATPPGREVEFSTQYPVSISTEDTLSFQDF 1460
Query: 5240 VQMQGTGANGDVIQSGDNILVYVSSYNEVDSLSKLLLDAKHKVTKVDGRTMKMGQVEIPT 5061
V QG+G+N DVI GDNILVYV+SYNEVD+LSKLL++ KVTKVDGRTMK+G +EI T
Sbjct: 1461 VNAQGSGSNCDVISKGDNILVYVASYNEVDALSKLLIERDFKVTKVDGRTMKVGNIEITT 1520
Query: 5060 SGTRDKKHFIVATNIIENGVTLDIDVVVDFGMKVVPELDSDNRLIRYTKVSISYGERIQR 4881
SGT KKHFIVATNIIENGVTLDIDVV DFG KV+P LD+DNR++ TK SI+YGERIQR
Sbjct: 1521 SGTPSKKHFIVATNIIENGVTLDIDVVADFGTKVLPYLDTDNRMLSTTKTSINYGERIQR 1580
Query: 4880 LGRVGRNKEGTALRIGATEKGLSAVPNIVATEAAFYSFAYGLPVMTNGVAVGVVANCTVP 4701
LGRVGR+K G ALRIG TEKGLS VP+ +ATEAA F YGLPV+TN V+ ++ N TV
Sbjct: 1581 LGRVGRHKPGHALRIGHTEKGLSEVPSCIATEAALKCFTYGLPVITNNVSTSILGNVTVK 1640
Query: 4700 QARTVLHFELPIFYMLHLVRFDGSMHPALHACLKGFKLRDSEIILNKMAIPNSGVKQWLT 4521
QART+ FE+ FY +VR+DGSMHP +HA LK FKLRDSEI+LNK+AIP+ GV WLT
Sbjct: 1641 QARTMSVFEITPFYTSQVVRYDGSMHPQVHALLKRFKLRDSEIVLNKLAIPHRGVNAWLT 1700
Query: 4520 AGEYSRIGARNSVDEFTRIPFFSKDVPDKIHEQVWEAVVTFKRDAGFGKIQSASACKVAY 4341
A EY+R+GA RIPF +D+P+K+H +W+ +V FK DAGFG++ SASA KVAY
Sbjct: 1701 ASEYARLGANVEDRRDVRIPFMCRDIPEKLHLDMWDVIVKFKGDAGFGRLSSASASKVAY 1760
Query: 4340 TLQTDAASITRTVCIIEELIKNEVKKQEYFQT-ASGIDCGSGFSLVSLTNAIRSRHMSNH 4164
TLQTD SI RTV II+ LI E +KQEYF+T S S FSL S+TNAI+SR M +H
Sbjct: 1761 TLQTDVNSIQRTVTIIDTLIAEERRKQEYFKTVTSNCVSSSNFSLQSITNAIKSRMMKDH 1820
Query: 4163 TAENIAILEAAKGQLEEFRNLGIDPTTRTVTD---------FGALECVQFQSADGISKQL 4011
T ENI++LE AK QL EFRNL D + T TD +GALE V Q+ +SK L
Sbjct: 1821 TCENISVLEGAKSQLLEFRNLNADHSFATNTDGISRHFMSEYGALEAVHHQNTSDMSKFL 1880
Query: 4010 GLKGKWNKPLITKDILVAGFTMFGGMWMIYNYLKRAITTNVEFQASGKRQNQKRRFQIAR 3831
LKGKWNK LIT+D+LV + GG+WM+ +L+ ++ V +A GKRQ QK +F+ AR
Sbjct: 1881 KLKGKWNKTLITRDVLVLCGVLGGGLWMVIQHLRSKLSEPVTHEAKGKRQRQKLKFRNAR 1940
Query: 3830 NNKHAFEVNPDETDVEHYFGEAYGKKAQGKGRTRGMGAKSRRFYNMYGFDPAEYTFARYV 3651
+NK EV D+ +EH+FG+AY KK + KGRTRG+G K+R+F NMYGFDP +++ R+V
Sbjct: 1941 DNKMGREVYGDDDTIEHFFGDAYTKKGKSKGRTRGIGHKNRKFINMYGFDPEDFSAVRFV 2000
Query: 3650 DPLTGYTLDESALTEVKLVQEHFGKIRHELRMREELEPEAIDYHKKIEVYFVKDLAKQVL 3471
DPLTG TLD++ T++ LVQEHFG IR +L +ELEP I +K I+ Y++ + + L
Sbjct: 2001 DPLTGATLDDNPFTDITLVQEHFGNIRMDLLGEDELEPNQIRMNKTIQAYYMNNKTGKAL 2060
Query: 3470 KIDMDPHNPFEIGRNTESIAGYPERKGELRQMGKPTLMSPTLLP-AQREYEFDEPVVFES 3294
K+D+ PH P ++ +IAG+PER+ ELRQ GK ++ +P A E+ PV ES
Sbjct: 2061 KVDLTPHIPLKVCDLHATIAGFPERENELRQTGKAQPINIDEVPRANNEF---VPVDHES 2117
Query: 3293 KATFYGMRDYNPISSSVCLLANESDGYEREIHGIGYGSMIITNQHLFQHNNGTLSVQSHR 3114
+ F G+RDYNPIS+++C L N SDG ++G+G+G +I+TN+HLF+ NNG L ++S
Sbjct: 2118 NSMFRGLRDYNPISNNICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNGELVIKSRH 2177
Query: 3113 GKFFIPNTTQLKMYPFPGRDLLIIQMPKDFPPFPQKLKFRSPVSGDRVCMIGSNFQDKYX 2934
G+F I NTTQL + P P RDLL+I++PKD PPFPQKL FR P G+R+CM+GSNFQ K
Sbjct: 2178 GEFVIKNTTQLHLLPIPDRDLLLIRLPKDVPPFPQKLGFRQPEKGERICMVGSNFQTKSI 2237
Query: 2933 XXXXXXXXXXSQKDESVFYRHWISTKTGHCGLPMVSVKDGYILGIHSLTSKDDASGFLIS 2754
+ S F++HWISTK G CG PMVS KDG ILG+HSL + ++ + +
Sbjct: 2238 TSVVSETSTIMPVENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYFAA 2297
Query: 2753 FPQDMEKNYLQNAEQVQWTKKWRLNVDLIDWGTLNLTTNKPDNLFRLSKDLLGLMAEPVE 2574
FP D + YL E +W K W+ N I WG+LN+ ++P LF++SK + L + V
Sbjct: 2298 FPDDFAEKYLHTIEAHEWVKHWKYNTSAISWGSLNIQASQPSGLFKVSKLISDLDSTAVY 2357
Query: 2573 FQAHENRWLYERLGGNLHAVARTTNQLVTKHVVKGKCLLFATYLETNDEAKQFFQPLMGA 2394
Q +NRW++E+L GNL A+A +QLVTKH VKGKC +F YL+ +DEA+++FQP++G
Sbjct: 2358 AQTQQNRWMFEQLTGNLKAIAHCPSQLVTKHTVKGKCQMFDLYLKLHDEAREYFQPMLGQ 2417
Query: 2393 YQKSRLNKEAYIKDLFKYNSPTTIGVLEPDKFERAEALVMRLFERVGFSECEYVTCPDAI 2214
YQKS+LN+EAY KDL KY +P G ++ D FE+ +V+ GF C YVT + I
Sbjct: 2418 YQKSKLNREAYAKDLLKYATPIEAGNIDCDLFEKTVEIVVSDLRGYGFETCNYVTDENDI 2477
Query: 2213 FSALNMKAAVGALYHGKKKDYFDSFSEADKAQILKDSCYRLYAGKMGVWNGSLKAELRPL 2034
F ALNMK+AVGALY GKKKDYF F+ K +ILK SC RL+ GKMGVWNGSLKAELRPL
Sbjct: 2478 FEALNMKSAVGALYKGKKKDYFAEFTPEMKEEILKQSCKRLFLGKMGVWNGSLKAELRPL 2537
Query: 2033 EKVQANKTRSFTAAPIDTLLGGKVCVDDFNNQFYSLNLKAPWSVGMTKFYGGWNELMTSL 1854
EKV+ANKTR+FTAAP+DTLLGGKVCVDDFNNQFY NL+APWSVGMTKFY GW+ L+ SL
Sbjct: 2538 EKVEANKTRTFTAAPLDTLLGGKVCVDDFNNQFYDHNLRAPWSVGMTKFYCGWDRLLESL 2597
Query: 1853 PDGWIYCDADGSQFDSSLTPYLINAVLNLRLHFMEEWDIGEKMLENLYTEIVYTPIATPD 1674
PDGW+YCDADGSQFDSSL+PYLINAVLN+RL FMEEWD+G+ ML NLYTEIVYTPI+TPD
Sbjct: 2598 PDGWVYCDADGSQFDSSLSPYLINAVLNIRLGFMEEWDVGQVMLRNLYTEIVYTPISTPD 2657
Query: 1673 GTVIKKYKGNNSGQPSTVVDNTIMVILAMYYSGEVYN-PTLSLDDYCKFFVNGDDLLIAV 1497
GT++KK+KGNNSGQPSTVVDNT+MVILA+ YS + P+ D +FFVNGDDLL++V
Sbjct: 2658 GTLVKKFKGNNSGQPSTVVDNTLMVILAVNYSLKKSGIPSELRDSIIRFFVNGDDLLLSV 2717
Query: 1496 HPNHVDFLQDLQNSFQHLGLKYTFTSRYHTREELWFMSHKAIKVDGVYIPKLEEERIVSI 1317
HP + L + ++F+ LGLKYTF SR + +LWFMSH+ K +G++IPKLE ERIVSI
Sbjct: 2718 HPEYEYILDTMADNFRELGLKYTFDSRTREKGDLWFMSHQGHKREGIWIPKLEPERIVSI 2777
Query: 1316 LEWDRAVLPEHRLEAICASMIEAWGYPSLLHQIRKFYYWVLEQAPYSVLSSEGKAPYISE 1137
LEWDR+ P HRLEAICA+MIE+WGY L H+IRKFY W++EQAP+S L+ EGKAPYI+E
Sbjct: 2778 LEWDRSKEPCHRLEAICAAMIESWGYDKLTHEIRKFYAWMIEQAPFSSLAQEGKAPYIAE 2837
Query: 1136 VALKHLYLN-QIEKSELERYMDGLDWSSTQGIEE-VEFQANDTYDAG---------KKTD 990
AL+ LYL+ + + +L Y+ + G+E V QA +T DAG K+
Sbjct: 2838 TALRKLYLDKEPAQEDLTHYLQAIFEDYEDGVEACVYHQAGETLDAGLTEEQKQAEKERK 2897
Query: 989 KPEDVEKNHEKENKELTPPPNQEAGPSKG-RDKDVDVGTKGTFQVPRLKSIGSKMTLPRV 813
+ E EK E++ K+L ++ +G RDK+V+ GT GTF VPRLKS+ SKM +PR
Sbjct: 2898 EREKAEKERERQ-KQLALKKGKDVAQGEGERDKEVNAGTSGTFSVPRLKSLTSKMRVPRY 2956
Query: 812 GGRVIVNLEHLLTYEPEQVDLSNTRATRSQFDSWYNGIKGAYDLNDSSMGVVLNGLMVWC 633
RV +NL+HL+ Y PEQ DLSNTR+TR QFD+W+ G+ Y+L + M ++LNGLMVWC
Sbjct: 2957 EKRVALNLDHLILYTPEQTDLSNTRSTRKQFDTWFEGVMADYELTEDKMQIILNGLMVWC 3016
Query: 632 IENGTSPNIHGHWTMMDGDEQVEYPLRPVVEMAQPTLRQIMSHFSALAEAYIEKRNATKP 453
IENGTSPNI+G W MMDGD+QVE+P++P+++ A+PT RQIM+HFS +AEAYIEKRN +P
Sbjct: 3017 IENGTSPNINGMWVMMDGDDQVEFPIKPLIDHAKPTFRQIMAHFSDVAEAYIEKRNQDRP 3076
Query: 452 YMPRYGLLRNLRDLSLARYAFDFYEVTARTPVRAREAHMQMKAAALRNSDNKMFGLDGNS 273
YMPRYGL RNL D+SLARYAFDFYE+T+RTP+RAREAH+QMKAAALR ++N +FGLDGN
Sbjct: 3077 YMPRYGLQRNLTDMSLARYAFDFYEMTSRTPIRAREAHIQMKAAALRGANNNLFGLDGNV 3136
Query: 272 GDKEEDTERHTANDVNRNMHHLMGVR 195
G E+TERHT DVNRNMH+L+GV+
Sbjct: 3137 GTTVENTERHTTEDVNRNMHNLLGVK 3162
>dbj|BAQ56293.1| polyprotein [Turnip mosaic virus]
Length = 3164
Score = 2957 bits (7665), Expect = 0.0
Identities = 1510/2966 (50%), Positives = 2010/2966 (67%), Gaps = 36/2966 (1%)
Frame = -2
Query: 8984 KRVVHTPIRYS---VENIIRAIANQNKNCKLDLEIISTKKATRARHTMWRNRLYVKAQTK 8814
KR+VH + S V+ +IR++ K ++E I KK+ + + + Q
Sbjct: 211 KRIVHKTCKMSDQGVDMLIRSLVKIFKAKSANIEYIG-KKSIKVDFIRKERTKFARIQVA 269
Query: 8813 HELGVRHKRDILVCEWGRQVLRLLVSKTAGNRAHDANMFTQGSSGIIIMSHCLSGNVSAS 8634
H LG R +RD+L + +L + + + G SG+I+ + L+ S S
Sbjct: 270 HLLGKRAQRDLLAGVEENHFIDILSEYSGNKTVINPGVVCAGWSGVIVRNEILTQKRSGS 329
Query: 8633 RGNLFIVRGRDGEKLYDSQSVVTSHVASRMRHYSA-GERFWKGYGRGFNSHTPSVG-HQC 8460
N F++RG KLYD++ +T ++ ++ H+SA G FWKG+ R F ++ S H C
Sbjct: 330 PSNAFVIRGEHEGKLYDARVKITRTMSHKIVHFSAAGANFWKGFDRCFLAYRSSDREHTC 389
Query: 8459 RSDLDVEECGYVAAMATQVLFPCGHITCQQCADNFVSCSKNDLKEEYGTRIQGLIDEVQN 8280
+ LDV ECG VAA+ +FPCG ITC C + +I L + +++
Sbjct: 390 YTGLDVTECGEVAALMCLAMFPCGKITCPDCVTDSEMSQGQASAPNMRHKIVQLREVIKS 449
Query: 8279 KHPKFAHVVKFLSLFNDYLRFSNENIRQFSEAKRIIGDRKEAPFQQLAALNDLLIKVGEC 8100
+P+F H V+ L + L N N + F+E + + ++A F LN +LIK
Sbjct: 450 SYPRFKHAVQILDRYEQSLHGENTNYQDFAEIQSLTDGMEKAAFPHANKLNAILIKGATA 509
Query: 8099 TSEEAALGTANLLELVRFQKNRTDNISGTSLTHFRNKVSSKIHVNLDLMCDNQLDDDGNF 7920
T EE T +LLE+ R+ KNRT+NI SL FRNK+S K H+N LMCDNQLD +GNF
Sbjct: 510 TGEEYGQATRHLLEITRYMKNRTENIEKGSLKSFRNKISQKAHINPTLMCDNQLDKNGNF 569
Query: 7919 KWRQRGFHAKRMFDNFYEVVNPSKGYDSFIVRTNPNGVRKTAIGNLVISTNMATFREQMR 7740
W +RG+HAKR F N++E+++P KGY + R PNG RK AIG L++ TN REQMR
Sbjct: 570 IWGERGYHAKRFFSNYFEIIDPKKGYTQYETRIVPNGSRKLAIGKLIVPTNFEVLREQMR 629
Query: 7739 GEPVEPQALSLACTSKLKGSYVYPCCCVTTDTGKPIESEMLAPTKDHLVIGNTGDSKFVT 7560
GEPVEP +++ C SK +G +V+ CCCVTT++G P+ SE+ PTK HLVIGN+GD K+V
Sbjct: 630 GEPVEPHPITVECVSKSQGDFVHACCCVTTESGDPVLSEIKMPTKHHLVIGNSGDPKYVD 689
Query: 7559 VPKILEDGMYVAKEGYCYVNIFVAMLINVSDVQAKDYTRRVRDYAIPTLGKWPTLINLAT 7380
+P+I E+ MY+AKEGYCY+NIF+AML+NV + QAK++T+ VRD + LGKWPTL+++AT
Sbjct: 690 LPEIEENKMYIAKEGYCYINIFLAMLVNVKESQAKEFTKVVRDKLVGELGKWPTLLDIAT 749
Query: 7379 VCHFLTILYPDIKSAELPRILVDHKTCTMHVVDSFGSLSTGYHILKANTVGQLIKFANDE 7200
C+FL + YPD+ +AELPR+LVDHKT +HVVDS+GSLSTGYHILK NTV QLIKF
Sbjct: 750 ACYFLKVFYPDVANAELPRMLVDHKTKIIHVVDSYGSLSTGYHILKTNTVEQLIKFTRHN 809
Query: 7199 LESDMKLYAVGGL-----HGXXXXXXXXXXXVIMLARGIYRPKELKSILEHDPTLLVYSL 7035
LES +K Y VGG HG L +G+YRPK+LK + +P L +Y+L
Sbjct: 810 LESSLKHYRVGGTKWEDAHGTNNIDNPQWCIR-RLIKGVYRPKQLKEDMLTNPFLPLYAL 868
Query: 7034 LSPCVLIAMYKNRTFELAVSEWLQKDTEVASLCNQLEVVARKISVSKVLAVQQQLIAEQA 6855
LSP V++A Y + + E ++ +++ D+ VA L L+ +ARK+S S+ + Q Q+I
Sbjct: 869 LSPGVILAFYNSGSLEYLMNHYIRADSSVAVLLVVLQSLARKVSASQSVLAQLQIIERSL 928
Query: 6854 SQMIRS-VERSQAHSPSRHFVRLLLARIIENQQMDKELIASGFTQLRLDGDLMREKKFLE 6678
+++ + + + + L +I + + EL G+T LR + EK +L+
Sbjct: 929 PELVEARANVTGSDGAASQACNKFLGMLIHMSEPNNELADGGYTILRDHSITILEKSYLQ 988
Query: 6677 ALAHSWRDLSWSERCTSIWRSRKHSQSGTGPSKSATSDDLNVTWRERFNSLRGGVAETIR 6498
L +W +LSWSERC + S K + + DL + E S + ++
Sbjct: 989 ILDEAWSELSWSERCAIKYYSSKQAIFSQKDLPVQSGVDLGGRYSESVISSYEWSKQRVK 1048
Query: 6497 DGRSKIGATIKRKSNELVGKVTCKLLLTSRLLCPDIFRMVNVLTVMYLLLQIFTGVRGHI 6318
S + + + + GKV+ + T L PD+FR +NVL + LL+ I + +
Sbjct: 1049 RLYSSMCNKTRNSVSWVGGKVSSSVCRTINYLVPDVFRFINVLICISLLITIASEANRIV 1108
Query: 6317 QAHQQLKIEKQRLEDDLNFDMVMRLYNIFYERYPTNAPSLYEFEQYLQKTNQSAYQYYMK 6138
A ++LK++ + E + + ++ + P++ EF Y+ ++
Sbjct: 1109 TAQRRLKLDVEETERR-KMEWELAFHHAILTQSAGQHPTIDEFRAYIADKAPHLSEHI-- 1165
Query: 6137 VCGPDADDEKVEFQAKGACEIELERTVAFVALIMMMFDAERSDCVYKVLSKLRGLMAPIG 5958
+ +++ V QAK E ELER +AFVAL++MMFDAERSDCV K+L+KL+GL+A +
Sbjct: 1166 ----EPEEKAVVHQAKRQSEQELERIIAFVALVLMMFDAERSDCVTKILNKLKGLVATV- 1220
Query: 5957 TESVAFQSIDTVKEILGETKMAIDIEIDTENHQMNRLKGT-TFSDWWQNQISQGRTIPHY 5781
+V Q+++ +++ L E + +D E+ ++ + +L TF+ WW +Q+S+G TIPHY
Sbjct: 1221 EPTVYHQTLNDIEDDLSERNLFVDFELSSDGDMLQQLPAEKTFASWWSHQLSRGFTIPHY 1280
Query: 5780 RTEGHFMEFTRANAQTVANSIAHSEHNDLLIMGAVGSGKSTGLPFYLSKKGKVLIIEPTK 5601
RTEG FM FTRA A VA IAH D+L+MGAVGSGKSTGLP++LS+KG VL++EPT+
Sbjct: 1281 RTEGKFMTFTRATATEVAGRIAHESDKDILLMGAVGSGKSTGLPYHLSRKGNVLLLEPTR 1340
Query: 5600 PLAENVHKQLQGNPFMTQATLKMRGCNVFGSAPIHVQTSGYALHYFAHNVAQLAEFKFII 5421
PLAENVHKQL PF TL+MRG FGSAPI V TSG+AL+YFA+N ++ EF F+I
Sbjct: 1341 PLAENVHKQLSQAPFHQNTTLRMRGLTAFGSAPISVMTSGFALNYFANNRMRIEEFDFVI 1400
Query: 5420 FDECHVHDSAAMAFRCLLSEYDYGGKILKVSATPPGREAVFSTQHAVQVKMEENLTFQQF 5241
FDECHVHD+ AMA RCLL E DY GKI+KVSATPPGRE FSTQ+ V + E+ L+FQ F
Sbjct: 1401 FDECHVHDANAMAMRCLLHECDYSGKIIKVSATPPGREVEFSTQYPVSISTEDALSFQDF 1460
Query: 5240 VQMQGTGANGDVIQSGDNILVYVSSYNEVDSLSKLLLDAKHKVTKVDGRTMKMGQVEIPT 5061
V QG+G+N DVI GDNILVYV+SYNEVD+LSKLL++ KVTKVDGRTMK+G +EI T
Sbjct: 1461 VNAQGSGSNCDVISKGDNILVYVASYNEVDTLSKLLIERDFKVTKVDGRTMKVGNIEITT 1520
Query: 5060 SGTRDKKHFIVATNIIENGVTLDIDVVVDFGMKVVPELDSDNRLIRYTKVSISYGERIQR 4881
SGT KKHFIVATNIIENGVTLDIDVV DFG KV+P LD+D+R++ TK SI+YGERIQR
Sbjct: 1521 SGTPSKKHFIVATNIIENGVTLDIDVVADFGTKVLPYLDTDSRMLSTTKTSINYGERIQR 1580
Query: 4880 LGRVGRNKEGTALRIGATEKGLSAVPNIVATEAAFYSFAYGLPVMTNGVAVGVVANCTVP 4701
LGRVGR+K G ALRIG TEKGLS VP+ +ATEAA F YGLPV+TN V+ ++ N TV
Sbjct: 1581 LGRVGRHKPGHALRIGHTEKGLSEVPSCIATEAALKCFTYGLPVITNNVSTSILGNVTVK 1640
Query: 4700 QARTVLHFELPIFYMLHLVRFDGSMHPALHACLKGFKLRDSEIILNKMAIPNSGVKQWLT 4521
QART+ FE+ FY +VR+DGSMHP +HA LK FKLRDSEI+LNK+AIP+ GV WLT
Sbjct: 1641 QARTMSVFEITPFYTSQVVRYDGSMHPQVHALLKRFKLRDSEIVLNKLAIPHRGVNAWLT 1700
Query: 4520 AGEYSRIGARNSVDEFTRIPFFSKDVPDKIHEQVWEAVVTFKRDAGFGKIQSASACKVAY 4341
A EY+R+GA RIPF +D+P+K+H +W+ +V FK DAGFG++ SASA KVAY
Sbjct: 1701 ASEYARLGANVEDRRDVRIPFMCRDIPEKLHLDMWDVIVKFKGDAGFGRLSSASASKVAY 1760
Query: 4340 TLQTDAASITRTVCIIEELIKNEVKKQEYFQT-ASGIDCGSGFSLVSLTNAIRSRHMSNH 4164
TLQTD SI RTV II+ LI E +KQEYF+T S S FSL S+TNAI+SR M +H
Sbjct: 1761 TLQTDVNSIQRTVTIIDTLIAEERRKQEYFKTVTSNCVSSSNFSLQSITNAIKSRMMKDH 1820
Query: 4163 TAENIAILEAAKGQLEEFRNLGIDPTTRTVTD---------FGALECVQFQSADGISKQL 4011
T ENI++LE AK QL EFRNL D + T TD +GALE V Q+ +SK L
Sbjct: 1821 TCENISVLEGAKSQLLEFRNLNADHSFATNTDGISRHFMSEYGALEAVHHQNTSDMSKFL 1880
Query: 4010 GLKGKWNKPLITKDILVAGFTMFGGMWMIYNYLKRAITTNVEFQASGKRQNQKRRFQIAR 3831
LKGKWNK LIT+D+LV + GG+WM+ +L+ I+ V +A GKRQ QK +F+ AR
Sbjct: 1881 KLKGKWNKTLITRDVLVLCGVLGGGLWMVIQHLRSKISEPVTHEAKGKRQRQKLKFRNAR 1940
Query: 3830 NNKHAFEVNPDETDVEHYFGEAYGKKAQGKGRTRGMGAKSRRFYNMYGFDPAEYTFARYV 3651
+NK EV ++ +EH+FG+AY KK + KGRTRG+G K+R+F NMYGFDP +++ R+V
Sbjct: 1941 DNKMGREVYGNDDTIEHFFGDAYTKKGKSKGRTRGIGHKNRKFINMYGFDPEDFSAVRFV 2000
Query: 3650 DPLTGYTLDESALTEVKLVQEHFGKIRHELRMREELEPEAIDYHKKIEVYFVKDLAKQVL 3471
DPLTG TLD+S T++ LVQEHFG IR +L +ELEP+ I +K I+ Y++ + + L
Sbjct: 2001 DPLTGATLDDSPFTDITLVQEHFGNIRMDLLGEDELEPDQIRMNKTIQAYYMNNKTGKAL 2060
Query: 3470 KIDMDPHNPFEIGRNTESIAGYPERKGELRQMGKPTLMSPTLLP-AQREYEFDEPVVFES 3294
K+D+ PH P ++ +IAG+PER+ ELRQ GK ++ +P A E+ PV ES
Sbjct: 2061 KVDLTPHIPLKVCDLHATIAGFPERENELRQTGKAQPINIDEVPRANNEF---VPVDHES 2117
Query: 3293 KATFYGMRDYNPISSSVCLLANESDGYEREIHGIGYGSMIITNQHLFQHNNGTLSVQSHR 3114
+ F G+RDYNPIS+++C L N SDG ++G+G+G +I+TN+HLF+ NNG L ++S
Sbjct: 2118 NSMFRGLRDYNPISNNICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNGELIIKSRH 2177
Query: 3113 GKFFIPNTTQLKMYPFPGRDLLIIQMPKDFPPFPQKLKFRSPVSGDRVCMIGSNFQDKYX 2934
G+F I NTTQL + P P RDLL+I++PKD PPFPQKL FR P G+R+CM+GSNFQ K
Sbjct: 2178 GEFVIKNTTQLHLLPIPDRDLLLIRLPKDVPPFPQKLGFRQPEKGERICMVGSNFQTKSI 2237
Query: 2933 XXXXXXXXXXSQKDESVFYRHWISTKTGHCGLPMVSVKDGYILGIHSLTSKDDASGFLIS 2754
+ S F++HWISTK G CG PMVS KDG ILG+HSL + ++ + +
Sbjct: 2238 TSVISETSTIMPVENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYFAA 2297
Query: 2753 FPQDMEKNYLQNAEQVQWTKKWRLNVDLIDWGTLNLTTNKPDNLFRLSKDLLGLMAEPVE 2574
FP D + YL E +W K W+ N I WG+LN+ ++P LF++SK + L + V
Sbjct: 2298 FPDDFAEKYLHTIEAHEWVKHWKYNTSAISWGSLNIQASQPSGLFKVSKLISDLDSTAVY 2357
Query: 2573 FQAHENRWLYERLGGNLHAVARTTNQLVTKHVVKGKCLLFATYLETNDEAKQFFQPLMGA 2394
Q +NRW++E+L GNL A+A +QLVTKH VKGKC +F YL+ +DEA+++FQP++G
Sbjct: 2358 AQTQQNRWMFEQLTGNLKAIAHCPSQLVTKHTVKGKCQMFDLYLKLHDEAREYFQPMLGQ 2417
Query: 2393 YQKSRLNKEAYIKDLFKYNSPTTIGVLEPDKFERAEALVMRLFERVGFSECEYVTCPDAI 2214
YQKS+LN+EAY KDL KY +P G ++ D FE+ +V+ GF C YVT + I
Sbjct: 2418 YQKSKLNREAYAKDLLKYATPIEAGNIDCDLFEKTVEIVVSDLRGYGFETCNYVTDENDI 2477
Query: 2213 FSALNMKAAVGALYHGKKKDYFDSFSEADKAQILKDSCYRLYAGKMGVWNGSLKAELRPL 2034
F ALNMK+AVGALY GKK+DYF F+ K +ILK SC RL+ GKMGVWNGSLKAELRPL
Sbjct: 2478 FEALNMKSAVGALYKGKKRDYFAEFTPEMKEEILKQSCKRLFLGKMGVWNGSLKAELRPL 2537
Query: 2033 EKVQANKTRSFTAAPIDTLLGGKVCVDDFNNQFYSLNLKAPWSVGMTKFYGGWNELMTSL 1854
EKV+ANKTR+FTAAP+DTLLGGKVCVDDFNNQFY NL+APWSVGMTKFY GWN L+ SL
Sbjct: 2538 EKVEANKTRTFTAAPLDTLLGGKVCVDDFNNQFYDHNLRAPWSVGMTKFYCGWNRLLESL 2597
Query: 1853 PDGWIYCDADGSQFDSSLTPYLINAVLNLRLHFMEEWDIGEKMLENLYTEIVYTPIATPD 1674
PDGW+YCDADGSQFDSSL+PYLINAVLN+RL FMEEWD+GE ML NLYTEIVYTPI+TPD
Sbjct: 2598 PDGWVYCDADGSQFDSSLSPYLINAVLNIRLGFMEEWDVGEVMLRNLYTEIVYTPISTPD 2657
Query: 1673 GTVIKKYKGNNSGQPSTVVDNTIMVILAMYYSGEVYN-PTLSLDDYCKFFVNGDDLLIAV 1497
GT++KK+KGNNSGQPSTVVDNT+MVILA+ YS + P+ D +FFVNGDDLL++V
Sbjct: 2658 GTLVKKFKGNNSGQPSTVVDNTLMVILAVNYSLKKSGIPSELRDSIIRFFVNGDDLLLSV 2717
Query: 1496 HPNHVDFLQDLQNSFQHLGLKYTFTSRYHTREELWFMSHKAIKVDGVYIPKLEEERIVSI 1317
HP + L + ++F+ LGLKYTF SR + +LWFMSH+ K +G++IPKLE ERIVSI
Sbjct: 2718 HPEYEYILNTMADNFRELGLKYTFDSRTREKGDLWFMSHQGHKREGIWIPKLEPERIVSI 2777
Query: 1316 LEWDRAVLPEHRLEAICASMIEAWGYPSLLHQIRKFYYWVLEQAPYSVLSSEGKAPYISE 1137
LEWDR+ P HRLEAICA+MIE+WGY L H+IRKFY W++EQAP+S L+ EGKAPYI+E
Sbjct: 2778 LEWDRSKEPCHRLEAICAAMIESWGYDKLTHEIRKFYAWMIEQAPFSSLAQEGKAPYIAE 2837
Query: 1136 VALKHLYLN-QIEKSELERYMDGLDWSSTQGIEE-VEFQANDTYDAG---------KKTD 990
AL+ LYL+ + + +L Y+ + G+E V QA +T DAG K+
Sbjct: 2838 TALRKLYLDKEPAQEDLTHYLQAIFEDYEDGVEACVYHQAGETLDAGLTEEQKQAEKERK 2897
Query: 989 KPEDVEKNHEKENKELTPPPNQEAGPSKG-RDKDVDVGTKGTFQVPRLKSIGSKMTLPRV 813
+ E EK E++ K+L ++ +G RDK+V+ GT GTF VPRLKS+ SKM +PR
Sbjct: 2898 EREKAEKERERQ-KQLALKKGKDVAQGEGERDKEVNAGTSGTFSVPRLKSLTSKMRVPRY 2956
Query: 812 GGRVIVNLEHLLTYEPEQVDLSNTRATRSQFDSWYNGIKGAYDLNDSSMGVVLNGLMVWC 633
RV ++L+HL+ Y PEQ DLSNTR+TR QFD+W+ G+ Y+L + M ++LNGLMVWC
Sbjct: 2957 EKRVALSLDHLILYTPEQTDLSNTRSTRKQFDTWFEGVMADYELTEDKMQIILNGLMVWC 3016
Query: 632 IENGTSPNIHGHWTMMDGDEQVEYPLRPVVEMAQPTLRQIMSHFSALAEAYIEKRNATKP 453
IENGTSPNI+G W MMDGD+QVE+P++P+++ A+PT RQIM+HFS +AEAYIEKRN +P
Sbjct: 3017 IENGTSPNINGMWVMMDGDDQVEFPIKPLIDHAKPTFRQIMAHFSDVAEAYIEKRNQDRP 3076
Query: 452 YMPRYGLLRNLRDLSLARYAFDFYEVTARTPVRAREAHMQMKAAALRNSDNKMFGLDGNS 273
YMPRYGL RNL D+SLARYAFDFYE+T+RTP+RAREAH+QMKAAALR ++N +FGLDGN
Sbjct: 3077 YMPRYGLQRNLTDMSLARYAFDFYEMTSRTPIRAREAHIQMKAAALRGANNNLFGLDGNV 3136
Query: 272 GDKEEDTERHTANDVNRNMHHLMGVR 195
G E+TERHT DVNRNMH+L+GV+
Sbjct: 3137 GTTVENTERHTTEDVNRNMHNLLGVK 3162