BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Aconitum23_contig00000050
         (9461 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ADO34171.1| polyprotein [Lily mottle virus]                       3279   0.0  
dbj|BAJ10467.1| polyprotein [Lily mottle virus]                      3268   0.0  
emb|CAJ15516.1| polyprotein [Lily mottle virus]                      3256   0.0  
ref|NP_945133.1| polyprotein [Lily mottle virus] gi|38707331|emb...  3253   0.0  
gb|AEN25480.2| polyprotein [Lily mottle virus]                       3252   0.0  
gb|ADC95428.1| polyprotein [Lily mottle virus]                       3247   0.0  
emb|CAI59123.1| polyprotein [Thunberg fritillary virus]              3028   0.0  
ref|YP_254713.1| polyprotein [Thunberg fritillary virus] gi|6826...  3026   0.0  
gb|AKI32473.1| polyprotein [Potato virus A]                          3005   0.0  
gb|AKI32469.1| polyprotein [Potato virus A]                          3002   0.0  
gb|ADA57721.1| polyprotein [Potato virus A]                          2988   0.0  
gb|AFQ95552.1| polyprotein [Narcissus late season yellows virus]     2985   0.0  
dbj|BAM99210.1| polyprotein [Turnip mosaic virus]                    2983   0.0  
ref|YP_003725718.1| polyprotein [Panax virus Y] gi|298155391|gb|...  2982   0.0  
gb|AAN40503.1| polyprotein [Potato virus A]                          2982   0.0  
gb|AKI32471.1| polyprotein [Potato virus A]                          2981   0.0  
gb|AJS10746.1| polyprotein [Sweet potato latent virus]               2981   0.0  
gb|AAN34778.1| polyprotein [Potato virus A]                          2981   0.0  
ref|YP_008719787.1| polyprotein [Pokeweed mosaic virus] gi|40007...  2979   0.0  
emb|CAB58241.1| polyprotein [Potato virus A]                         2979   0.0  

>gb|ADO34171.1| polyprotein [Lily mottle virus]
          Length = 3096

 Score = 3279 bits (8501), Expect = 0.0
 Identities = 1612/2932 (54%), Positives = 2148/2932 (73%), Gaps = 25/2932 (0%)
 Frame = -1

Query: 8921 NLVRAVANIQKRTGVVIELISNRRKVTANRLLKDNKRYVRVVTKHELGYRHKCDVRTGQW 8742
            +L+RA+A I  +    +E++  RR V A  + +D   Y++V   H  G R + D++   +
Sbjct: 175  SLMRAIAKIGAKNSTKVEIVDKRR-VQARYIKRDAGSYLQVRVAHHEGLRRRRDLKLSAF 233

Query: 8741 DRIVLKQLVEKSSGRLKHRADEFTPGSSGIALLSDKIDGQVSTSRGGVFIIRGRDGSKLY 8562
                L QLV  + G   H   +   G SGI LL+ ++ G  S S   +F++RG    KLY
Sbjct: 234  ADQCLTQLVSTTHGTKYHHVTQLKAGDSGIVLLARRLFGWHSGSCSQIFVVRGNHEGKLY 293

Query: 8561 DSQCVVTTHVAARMHHYS-VSERFWKGYDRGF-QMARGPTDHTCDSNLDVEECGLVAAIA 8388
            +++  VT  +  +M HYS   ++FW G++  F ++      HTC SN +V ECG VAA+ 
Sbjct: 294  EARRKVTLTMTHKMVHYSGPGDKFWAGFNSQFLRIKPKEIPHTCTSNFNVFECGQVAALM 353

Query: 8387 TQALFPCGKITCQQCVDKFTSSGKSELREEHSARLEELIGRIQKNHPKFKHVIQXXXXXX 8208
             QAL+PCG+ITCQQC  ++    K EL E+ S  L     +I++NH +F HV        
Sbjct: 354  CQALYPCGRITCQQCASEYLELTKVELGEKLSDGLYRTSSQIRENHQEFAHVAHILTVIA 413

Query: 8207 XXXXXXXXNVDQFSEVNRMIGERQETPFKQLADLNNLMIKIGSCTSEEVALGTAKILEIV 8028
                    N++ F++V+++IGE+ ++PF  L  LN+++IK    +S E+   +  I E+ 
Sbjct: 414  DLLSLKNNNMEAFTDVHKLIGEQTQSPFTHLNRLNSILIKGSDMSSNELHECSDCIRELA 473

Query: 8027 RFQRNRTDNIAKGSLAHFRNKVSSKVHVNLDLMCDNQLDDDGNFRWRQRAYHAKRLFSNF 7848
            RFQ+NRTDNI K  ++ FRNK SSK + NLDLMCDNQLD +GNF W QR YHAKR  SN+
Sbjct: 474  RFQKNRTDNIKKLDVSVFRNKASSKSYFNLDLMCDNQLDKNGNFEWGQRGYHAKRFLSNY 533

Query: 7847 FDVIDPANGYDQFIKRKNPNGMRKTAIGNLIVSTNMQTFRQQMRGEPMESVPLSNACTSR 7668
            F+V++  N Y +   RK+PNGMR+ AIG  IVSTN + FR+ M G+ +  +P++ AC S+
Sbjct: 534  FEVVNTQNAYREHTLRKHPNGMRELAIGKFIVSTNFEVFRKSMEGKRIPQMPVTEACLSQ 593

Query: 7667 LKGGFVYPCCCVTTDEGTPIESDMMIPTKDHLVIGNTGDSKFVNMPRMV-EGMYIAKQGY 7491
                F+Y CCCVT ++GTP+ES   +PTK+ LV+GNTGD KFV+MP    E MYIA++GY
Sbjct: 594  RGERFIYQCCCVTNEDGTPLESTFKMPTKNTLVLGNTGDEKFVDMPTDTDEKMYIAREGY 653

Query: 7490 CYVNIFLAMLINVSDAQSKDYTKKVRDIVIPKLGEWPTLLDVATMCHFLTVFYPDVKSAE 7311
            CY+NIF AMLINV ++Q+K +TK VRD ++P+LG WPT++DVAT CH LTVF+PD  SAE
Sbjct: 654  CYINIFFAMLINVRESQAKAFTKMVRDRLVPELGTWPTMIDVATACHTLTVFFPDTLSAE 713

Query: 7310 LPRILVDHRNQIMHVIDSFGSLTTGYHILKANTVGQLVKFSNDELQSEMMHYRVGGTMMS 7131
            LPRILVDH  + MHVIDS+GS++TGYH LKANTV QLV F++D L+SEM HY+VGG   +
Sbjct: 714  LPRILVDHNTKTMHVIDSYGSVSTGYHQLKANTVSQLVLFASDTLKSEMKHYQVGGRKFT 773

Query: 7130 EESSEDAAVTLLARGVYRPTELKRVLEKDPLLLVYGLLSPRVLIAMHKSKTLEMALDQWL 6951
             E     AV LL + +YRP  ++ ++E +P L+   + SP VLIA+  S +LE A++ W+
Sbjct: 774  VEYE---AVKLLIKAIYRPKLMRTLMEDEPYLICLAMCSPGVLIALFNSGSLETAINYWI 830

Query: 6950 HKDTSVANLCQMIDVLAKKVSVSKLFRTQQQIISENAMEIARCVDRCRTTSPSRTFVQLV 6771
             +    A +  ++ VLA KVSV++    Q  ++S++A ++ + +DR   T  S + V   
Sbjct: 831  ARHKDTAQIFALLTVLATKVSVARTLTEQLALLSDDATDVLKIMDRTFATQHSVSLVHTF 890

Query: 6770 LTRLVESRNTSKELLSAGFQTLMYEGEEMREKKFSEVLAHSWRDLNWSQRCSAIWHSRKA 6591
            L +L E R+T   L+ +GF  L     E+ EK +   L  SWRDL+  ++CS +  S ++
Sbjct: 891  LMQLEEKRHTDVSLVGSGFANLCATTHELMEKNYLAELDASWRDLSLLEKCSQMRWSFRS 950

Query: 6590 SQHATNSSIEPEQTDSGETWTERFICLRGKLTSHVKVWTTSALSNGKRKAYETCGKVVCK 6411
             Q  +N       TD    +      L  +  ++++    +   N K + ++  G+ VC 
Sbjct: 951  PQQFSNELHPSASTDLNGRYNTSVRALSTRYMNNLRKSVCTKYHNMKIRTHQFIGRQVCN 1010

Query: 6410 LITSTKFFCPDIIKMVNVLSVFCLLLQISTVVNRHLLQYRILKEEQQNMRDDKDFETMMG 6231
             IT +  F PD+ + V++L++F ++L I   +N +  +Y  LK  + +  ++K +  ++ 
Sbjct: 1011 SITGSSRFFPDLARWVHILAIFSIMLNIIRTINIYTSEYIRLKNCELSQIEEKRWNKLLH 1070

Query: 6230 IYNLYVKTYEGEYPTLKQFSTYLQKVNPQIYAYYERTMGEPDDTDECVELQAKGKGEIEL 6051
             +++  K  +G+ PTL +F+ +L++ +P++Y+ +   + + ++  E V+ QAK  GE  L
Sbjct: 1071 TFDMMEKL-DGQKPTLIEFTKHLKQWDPELYSEFHSILQDEEEDTEEVQFQAKPDGERNL 1129

Query: 6050 ERTIAFVALIMMMFDAERSDCVYKVLNKLRGIMNPISAETVAFQGLDDMKELLGETKMAI 5871
            ER +A +AL MM+FDA+RSDCVYKVLNKL+G++N +  E V FQ +DD++++L E +M I
Sbjct: 1130 ERIMAIIALTMMVFDADRSDCVYKVLNKLKGLLNTVHQEPVKFQSIDDIQDILEEREMVI 1189

Query: 5870 DIELDTENHQLNRLGGVTFGDWWTHQLNQNRTVPHYRTEGKFVEFTRANAMIVANEIAHS 5691
            D E+  ++H +N+L G TF  WW++Q+  N  +PHYRTEG F+EFTRANA  VANEIAH 
Sbjct: 1190 DFEISADDHNINKLAGATFEQWWSNQMECNNVLPHYRTEGFFMEFTRANAAHVANEIAHG 1249

Query: 5690 DQTDFLVMGAVGSGKSTGLPFHLSRKGKVLMIEPTKPLAENVHKQLKGNPFMSNATLRMR 5511
               D L+ GAVGSGKSTGLPF+LS++G+VLM+EPT+PLA NVHKQL G+PF+ +ATL+MR
Sbjct: 1250 PHKDLLIRGAVGSGKSTGLPFYLSKRGRVLMLEPTRPLASNVHKQLAGDPFLVSATLKMR 1309

Query: 5510 GCSVFGSSPITVMTSGYALHYFAHNIAQLAEYQFVIIDECHVHDASAMAFRCLLLEYDYQ 5331
            G + FGS+PITVMTSGYA HY+A+N  QL +++F+I DECHV+D+SAMAFR LL EY Y 
Sbjct: 1310 GETTFGSAPITVMTSGYAFHYYANNPNQLRDFEFIIFDECHVNDSSAMAFRSLLAEYTYD 1369

Query: 5330 GKVLKVSATPPGREATFNTQHPVLVKMEESLSFQQFVALQGSGANGDITQNGDNILIYVA 5151
            G+++KVSATPPGRE  F TQHPV +   E L+FQQFVA+QG+GA GD+T  GDNIL+YVA
Sbjct: 1370 GRIIKVSATPPGREVEFTTQHPVEIIPIERLTFQQFVAVQGTGAVGDVTTKGDNILVYVA 1429

Query: 5150 SYNEVDTLSKMLLDKNHKVTKVDGRTMKMGQVEIPTAGTKEKKHFIVATNIIENGVTLDI 4971
            SY+EVD LSK L++K HKVTKVDGRTMK+G VEI T+G++ KKHF+VATNIIENGVTLDI
Sbjct: 1430 SYSEVDNLSKGLVEKGHKVTKVDGRTMKVGGVEIITSGSQAKKHFVVATNIIENGVTLDI 1489

Query: 4970 DVVVDFGMKVVPELDIDNRLIRYSKVAISYGERIQRLGRVGRNKEGVALRIGVTEKGLSA 4791
            DVVVDFG+KVV E+DID+RL RY K +ISYGERIQRLGRVGRNK GVA+R+G TEKGL A
Sbjct: 1490 DVVVDFGLKVVAEVDIDSRLTRYIKKSISYGERIQRLGRVGRNKPGVAVRVGTTEKGLQA 1549

Query: 4790 VPNVTATEAAFYCFAYGLPVMTSGVAVSMLSNCTVNQARTMMHFELPLFYMVHMVRFDGS 4611
            +P  TATEAAF CFAYGLPVMT+ V+ ++L+NCTV QARTMM FE+  FYM H VRFDG+
Sbjct: 1550 IPVTTATEAAFLCFAYGLPVMTNNVSTNILTNCTVLQARTMMLFEINPFYMCHFVRFDGT 1609

Query: 4610 MHPELHKCLKDYKLRDSEIILNKMAIPSSGVKSWMTAGEYSRLGARNSIEEFVRIPFYAR 4431
            MHPE+HK L  YKLRDSEIILNK+AIP+ G+  W TA EYS  G + +I + VR+PF++ 
Sbjct: 1610 MHPEVHKILTPYKLRDSEIILNKVAIPNKGLMQWPTAKEYSYQGFKMNIPDTVRLPFHSL 1669

Query: 4430 DIPDKVHERVWEVVVTFKRDAGFGKIQSASACKVAYTLQTDAASIPRTICIIEELIKNEV 4251
            DIP+++HER+W++V T K DAGFG+I +ASACK+AYTL+TD ASI RTI I+++LI+NE+
Sbjct: 1670 DIPERLHERMWQIVETHKGDAGFGRITTASACKIAYTLRTDVASIQRTIHILDKLIENEL 1729

Query: 4250 KKQEYFQVASGVDCGSG-FSLINITNALRSRHMSNHTAENIAILEAAKNQIYEFRNLGID 4074
            KKQEYF+  +   C S  FSL  ITNA+R+RH+ +HT EN+++L+AAK QI EF+N+  D
Sbjct: 1730 KKQEYFRNITSASCSSSSFSLTTITNAIRARHIKDHTVENVSVLQAAKAQILEFKNVTFD 1789

Query: 4073 PSS-KTVCDFGALECVQFQSAEGVSKQLKLKGHWNKSLITKDLLVAGFTLFGGLWMLYNH 3897
                  + ++GALECVQFQ+ E +++ L+LKGHWNKSL+T D+++ G  LFG +WM+ ++
Sbjct: 1790 LDHVNRMTEYGALECVQFQTLESMAQHLQLKGHWNKSLLTHDVVICGAVLFGCVWMVGSY 1849

Query: 3896 FKRAATTLVE-------FQASGKRQSQKRRFQIARNHKHAYEVNPDQTDVEHYFGEAYAK 3738
            FK   + +V+       FQA  KRQ Q+ RF+ AR++KHAYEV+ D  D++ YFG AY K
Sbjct: 1850 FKERCSGVVKRYNENVKFQAKNKRQRQRLRFREARDNKHAYEVHGDDADIQTYFGSAYTK 1909

Query: 3737 KPQQKGRTKGMGAKSRRFYNIYGFDPAEYTFARYVDPLTGYTLDENALTDARLVQEHFGK 3558
            K + KG T+GMG K+R+F N+Y FDP EY+FARYVDPLTGYTLDE  LTD  LVQ+HFG+
Sbjct: 1910 KGKTKGVTRGMGIKTRKFVNMYNFDPTEYSFARYVDPLTGYTLDEQTLTDIALVQDHFGR 1969

Query: 3557 IRLELREQDKLDAQALMANQKIEAYFVKDLAKQILKIDMTPHRPLELGCKTSTIAGYPER 3378
            IR +L E D  + + L  N ++E YFVK+LA QILKIDMTPH PL +     T+AG+PER
Sbjct: 1970 IRRKLMEDDVFEKETLAQNARLEVYFVKNLASQILKIDMTPHNPLRVCDVIETVAGFPER 2029

Query: 3377 EGELRQAAPHVIVDASVLPKQNEYTS-EGAEFESKATYQGLRDYNSISSSICLLENDSDG 3201
            + ELRQ+   V+V A+ LPK+N Y   E  EFE+K+T+ GLRDYN I++ +C LE++SDG
Sbjct: 2030 DMELRQSGKPVMVTAAELPKENPYPEGEIVEFENKSTFHGLRDYNPIATCVCRLEHNSDG 2089

Query: 3200 YTMKIHGIGFGSMIITNQHLFKRNNGSLKIQSHRGEFLVPNTTQLKMYPFEGRDLLLIQM 3021
            +T  ++GIG+GS IITNQHLF RNNG++ I+SH G + + N+TQL+++P EGRD+++IQ+
Sbjct: 2090 HTSSLYGIGYGSYIITNQHLFIRNNGTINIESHHGTYHIRNSTQLQLFPIEGRDIVIIQL 2149

Query: 3020 PKDFPPFPQKLKFRLPVSGERVCLIGSNFQEKYISSTVSESSVIAQKDNTSFFRHWITTQ 2841
            PKDFPPF ++LKFR P + ++VCL+G+NFQEK  +STVSE+S+I +KD++ FFRHWI+T+
Sbjct: 2150 PKDFPPFARRLKFRHPTTTDKVCLVGTNFQEKTTTSTVSEASLITRKDDSHFFRHWISTK 2209

Query: 2840 KGHCGLPLVSVKDGHILGIHSMTSLEDSSSFFISLPPDIGPKYLQNEENIEWTKKWRLNL 2661
             G CGLP VS KDG +LG+HS+TSL + S+FFI+ P D    YL+    + W K W+LN+
Sbjct: 2210 DGQCGLPAVSTKDGCVLGLHSLTSLVNDSNFFIAFPDDFEKNYLERANELNWVKHWKLNV 2269

Query: 2660 ELINWGAFKLSNEKPDNLFKLSKDIFELLDEPVDFQAKEGGWLYDRLGGNITAMARTSNQ 2481
            + I WGA  +  +KP N+FKLSKDI  L  EPV  Q++E  WL+DRL GN+ AMART NQ
Sbjct: 2270 DKICWGALSIEKDKPSNMFKLSKDIQRLDMEPVGLQSREDKWLFDRLNGNLKAMARTRNQ 2329

Query: 2480 LVTKHVVKGQCLLFQTYLETHPEASNFFKPLMGFYQKSRLNKEAYIKDLFKYNAPTTVGV 2301
            LVTKHVVKG+CLLF+TYL   PEA  +F P+MG YQKSRLNKEAYIKDLFKY++P  VG 
Sbjct: 2330 LVTKHVVKGKCLLFETYLNVTPEAKEYFTPMMGAYQKSRLNKEAYIKDLFKYSSPIVVGD 2389

Query: 2300 LNPHVFELAEESVYNMFVGIGFQKCVYVTDQEAIFSALNMKAATGALYQGKKKEYFENFT 2121
            ++   FE A +SV  +F G GF +C YVTD++ IFSALNM AA GA+Y GKK++YF++FT
Sbjct: 2390 VDCAAFEAACDSVTQLFEGAGFGRCNYVTDEQEIFSALNMNAAVGAMYSGKKRDYFKDFT 2449

Query: 2120 EADKAQILKDSCFRLYTGKLGVWNGSLKAELRPLEKVQANKTRSFTAAPIDTLLGGKVCV 1941
            + DK  IL+DSC RLY GK+GVWNGSLKAELR  EKV  NKTR+FTAAP+DTLLGGK CV
Sbjct: 2450 DLDKESILRDSCLRLYQGKMGVWNGSLKAELRAKEKVDLNKTRTFTAAPVDTLLGGKTCV 2509

Query: 1940 DDFNNQFYSLNLKAPWSVGMTKFYGGWNTLIRSLPEGWIYCDADGSQFDSSLTPYLINAV 1761
            DDFNN+FYSLN+  PWSVGMTKFY GW+ ++R LPEGW+YCDADGSQFDSSL+PYLINAV
Sbjct: 2510 DDFNNRFYSLNIACPWSVGMTKFYKGWDEMLRKLPEGWVYCDADGSQFDSSLSPYLINAV 2569

Query: 1760 LNLRLRFMEDWDVGTQMLENLYTEIVYTPIATPDGTIVKKYKGNNSGQPSTVVDNTIMVI 1581
            LNLRL FME+WDVG QML+NLYTEI+YTPIATPDGTI+KK+KGNNSGQPSTVVDNTIMVI
Sbjct: 2570 LNLRLHFMEEWDVGAQMLQNLYTEIIYTPIATPDGTIIKKFKGNNSGQPSTVVDNTIMVI 2629

Query: 1580 LAMHYASGLYNSDVAITEYCVFFVNGDDLIIAVHPDHQAFLDGLKESFTHLGLKYDFSNR 1401
            LA+HY+         + E+C +FVNGDDL++AV P+ +  LD    +F  LGL YDFS+R
Sbjct: 2630 LAIHYSYKYLKITKPLDEFCKYFVNGDDLLLAVAPEFEYLLDHFANTFQQLGLNYDFSSR 2689

Query: 1400 CQSREDLWFMSHKAILSGDIYIPKLEEERIVSILEWDRAILPEHRLEAICASMIEAWGYP 1221
             ++RE+LWFMSH+ I++  +YIPKLE ERIVSILEWDRA+ P HRLEAICASMIEAWGYP
Sbjct: 2690 TKNREELWFMSHRGIMTDGLYIPKLEPERIVSILEWDRAVEPVHRLEAICASMIEAWGYP 2749

Query: 1220 DLLYQIRRFYYWVLEQAPYNHLSQTGKAPYISEAALKNLYTNQ-SSPSELQRYVDSLEWN 1044
             LL++IR+FYYWVLEQAPY+ L+Q GKAPY+SE AL+ LYT + +S  EL+RY+ +L   
Sbjct: 2750 QLLHEIRKFYYWVLEQAPYSELAQLGKAPYLSEVALRALYTGEATSQDELERYLAAL--- 2806

Query: 1043 NLTGE----EAVEFQGTEDESLNAG-DQTKKTSEAKGKDN------KEKALETRPKDKDV 897
            NL GE    E V FQ   +++LNAG   + +TS     +        +++ E R +D+DV
Sbjct: 2807 NLEGECGGAEIVAFQA--NDTLNAGASSSTQTSRPTRPETAAVDVAPQQSPEPRVRDRDV 2864

Query: 896  DVGTSGIYQVPKLKAIGTKFCLPKVKGRTIVNLDHLISYEPEQINLSNARATQSQFAQWY 717
            D GT G +Q+P+LKA+ TK  +PK++GRTIVNL HL++Y PEQ ++SN R+TQ QF  WY
Sbjct: 2865 DAGTVGTFQIPRLKALATKISIPKIRGRTIVNLGHLVNYNPEQTDISNTRSTQKQFETWY 2924

Query: 716  NGVKDAYELDDNSMGIVMSGLMVWCIENGTSPNINGQWTMMDGDEQVEYPLKPVVENAQP 537
            N VKD Y L+D SM + M+GLMVWCIENGTSPNING W MMDGD+QVE+PL+P++E+A+P
Sbjct: 2925 NAVKDEYGLNDESMALAMNGLMVWCIENGTSPNINGAWLMMDGDQQVEFPLRPIIEHAKP 2984

Query: 536  SLRQIMAHFSALAEAYIEKRNATKPYMPRYGLLRNLRDSSLARYAFDFYEVTSRTPPRAR 357
            +LRQIMAHFS LAEAYIEK+NA KPYMPRYGL RNL D +LAR+AFDFYEVTSRTP RA+
Sbjct: 2985 TLRQIMAHFSHLAEAYIEKQNAEKPYMPRYGLQRNLTDFTLARFAFDFYEVTSRTPARAK 3044

Query: 356  EAHLQMKAAAIRNSSTKMFGLDGNAGDKEEDTERHTANDVSKNMHSLMGVRM 201
            EAH QMK AA+R   +K+FGLDG    ++EDTERHTA+DV+KNMHSL+G+ M
Sbjct: 3045 EAHFQMKTAALRGKQSKLFGLDGKVTTQDEDTERHTADDVNKNMHSLLGISM 3096


>dbj|BAJ10467.1| polyprotein [Lily mottle virus]
          Length = 3095

 Score = 3268 bits (8473), Expect = 0.0
 Identities = 1609/2929 (54%), Positives = 2143/2929 (73%), Gaps = 22/2929 (0%)
 Frame = -1

Query: 8921 NLVRAVANIQKRTGVVIELISNRRKVTANRLLKDNKRYVRVVTKHELGYRHKCDVRTGQW 8742
            +L+RA+A I  +  + IE++ + RKV A  + +D   Y++V   H  G R + D++   +
Sbjct: 175  SLMRAIAKIGAKNSIRIEIV-DERKVQARYIKRDAGSYLQVRVAHHEGLRRRRDLKLSAF 233

Query: 8741 DRIVLKQLVEKSSGRLKHRADEFTPGSSGIALLSDKIDGQVSTSRGGVFIIRGRDGSKLY 8562
                L QL   + G   H   +   G SGI LL+ ++ G  S S   +F++RG    KLY
Sbjct: 234  ADQCLTQLASTTHGTKYHHVTQLKAGDSGIVLLARRLFGWHSGSCSQIFVVRGNHEGKLY 293

Query: 8561 DSQCVVTTHVAARMHHYS-VSERFWKGYDRGF-QMARGPTDHTCDSNLDVEECGLVAAIA 8388
            +++  VT  +  +M HYS   ++FW G++  F ++      HTC SN +V ECG VAA+ 
Sbjct: 294  EARRKVTLTMTHKMIHYSGPGDKFWAGFNSQFLRIKPKEIPHTCTSNFNVFECGQVAALM 353

Query: 8387 TQALFPCGKITCQQCVDKFTSSGKSELREEHSARLEELIGRIQKNHPKFKHVIQXXXXXX 8208
             QAL+PCG+ITCQQC  ++    K EL E+ S  L     +I++NH +F HV        
Sbjct: 354  CQALYPCGRITCQQCASEYLELTKVELGEKLSDGLYRTSSQIRENHREFAHVAHILNVIA 413

Query: 8207 XXXXXXXXNVDQFSEVNRMIGERQETPFKQLADLNNLMIKIGSCTSEEVALGTAKILEIV 8028
                    N++ F+EV+++IGE+ ++PF  L  LN+++IK    +S E+   +  I E+ 
Sbjct: 414  DLLSLKNNNMEAFTEVHKLIGEQTQSPFTHLNRLNSMLIKGSDLSSNELYECSDCIRELA 473

Query: 8027 RFQRNRTDNIAKGSLAHFRNKVSSKVHVNLDLMCDNQLDDDGNFRWRQRAYHAKRLFSNF 7848
            RFQ+NRTDNI K  ++ FRNK SSK + NLDLMCDNQLD +GNF W QR YHAKR  SN+
Sbjct: 474  RFQKNRTDNIKKLDVSVFRNKASSKSYFNLDLMCDNQLDKNGNFEWGQRGYHAKRFLSNY 533

Query: 7847 FDVIDPANGYDQFIKRKNPNGMRKTAIGNLIVSTNMQTFRQQMRGEPMESVPLSNACTSR 7668
            F+V++  N Y +   RK+PNG R+ AIG  IVSTN + FR+ M G+ +  +P++ AC S+
Sbjct: 534  FEVVNTQNAYREHTLRKHPNGTRELAIGKFIVSTNFEVFRKSMEGKRIPQMPVTEACLSQ 593

Query: 7667 LKGGFVYPCCCVTTDEGTPIESDMMIPTKDHLVIGNTGDSKFVNMPRMV-EGMYIAKQGY 7491
                F+Y CCCVT ++GTP+ES   +PTK+ LV+GNTGD KFV+MP    E MYIA++GY
Sbjct: 594  RGERFIYQCCCVTNEDGTPLESTFKMPTKNTLVLGNTGDEKFVDMPTDTDEKMYIAREGY 653

Query: 7490 CYVNIFLAMLINVSDAQSKDYTKKVRDIVIPKLGEWPTLLDVATMCHFLTVFYPDVKSAE 7311
            CY+NIF AMLINV ++Q+K +TK VRD ++P+LG WPT++DVAT CH LTVF+PD  SAE
Sbjct: 654  CYINIFFAMLINVRESQAKAFTKMVRDRLVPELGTWPTMIDVATACHTLTVFFPDTLSAE 713

Query: 7310 LPRILVDHRNQIMHVIDSFGSLTTGYHILKANTVGQLVKFSNDELQSEMMHYRVGGTMMS 7131
            LPRILVDH  + MHVIDS+GS++TGYH LKANTV QLV F++D L+SEM HY+VGG   +
Sbjct: 714  LPRILVDHNTKTMHVIDSYGSVSTGYHQLKANTVSQLVLFASDTLKSEMKHYQVGGKKFT 773

Query: 7130 EESSEDAAVTLLARGVYRPTELKRVLEKDPLLLVYGLLSPRVLIAMHKSKTLEMALDQWL 6951
             E     AV LL + +YRP  ++ ++E +P L+   + SP VLIA+  S +LE A++ W+
Sbjct: 774  VEYE---AVKLLIKAIYRPKLMRTLMEDEPYLICLAMCSPGVLIALFNSGSLETAINYWI 830

Query: 6950 HKDTSVANLCQMIDVLAKKVSVSKLFRTQQQIISENAMEIARCVDRCRTTSPSRTFVQLV 6771
             +    A +  ++ VLA KVSV++    Q  I+S++A ++ + +DR   T  S + V   
Sbjct: 831  ARHKDTAQIFALLTVLATKVSVARTLTEQLAILSDHATDMLKIMDRTFATQHSVSLVHTF 890

Query: 6770 LTRLVESRNTSKELLSAGFQTLMYEGEEMREKKFSEVLAHSWRDLNWSQRCSAIWHSRKA 6591
            L +L E R+T   L+ +GF  L     E+ EK +   L  SWRDL+  ++CS +  S ++
Sbjct: 891  LMQLEEKRHTDVSLVGSGFANLSATTHELMEKNYLAELDASWRDLSLLEKCSQMRWSFRS 950

Query: 6590 SQHATNSSIEPEQTDSGETWTERFICLRGKLTSHVKVWTTSALSNGKRKAYETCGKVVCK 6411
             Q  +N       TD    +      L  +  ++++    +   N K + ++  G+ VC 
Sbjct: 951  PQQFSNELHPSASTDLNGRYNTSVRALSTRYMNNLRKSVCTKYHNMKIRTHQFIGRQVCN 1010

Query: 6410 LITSTKFFCPDIIKMVNVLSVFCLLLQISTVVNRHLLQYRILKEEQQNMRDDKDFETMMG 6231
             I  +  F PD+ + V++L++F +LL I   +N +  +Y  LK  + +  ++K +  ++ 
Sbjct: 1011 SIMGSSRFFPDLAQCVHILAIFSILLNIIRTINIYTSEYIRLKNCELSQIEEKRWNKLLH 1070

Query: 6230 IYNLYVKTYEGEYPTLKQFSTYLQKVNPQIYAYYERTMGEPDDTDECVELQAKGKGEIEL 6051
             +++  K  +G+ PTL +F+ +L++ +P++Y+ +   + + ++  E V+ QAK  GE  L
Sbjct: 1071 TFDMMEKI-DGQKPTLIEFTKHLKQWDPELYSEFHSILQDEEEDTEEVQFQAKPDGERNL 1129

Query: 6050 ERTIAFVALIMMMFDAERSDCVYKVLNKLRGIMNPISAETVAFQGLDDMKELLGETKMAI 5871
            ER +A +AL MM+FDA+RSDCVYKVLNKL+G++N +  E V FQ +DD+++ L E +M I
Sbjct: 1130 ERIMAIIALTMMVFDADRSDCVYKVLNKLKGLLNTVHQEPVKFQSIDDIQDYLEEREMVI 1189

Query: 5870 DIELDTENHQLNRLGGVTFGDWWTHQLNQNRTVPHYRTEGKFVEFTRANAMIVANEIAHS 5691
            D E+  ++H +N+L G TF  WW++Q+  N  +PHYRTEG F+EFTRANA  VANEIAH 
Sbjct: 1190 DFEISADDHNINKLAGATFEQWWSNQMECNNVLPHYRTEGFFMEFTRANAAHVANEIAHG 1249

Query: 5690 DQTDFLVMGAVGSGKSTGLPFHLSRKGKVLMIEPTKPLAENVHKQLKGNPFMSNATLRMR 5511
               D L+ GAVGSGKSTGLPF+LS++G+VLM+EPT+PLA NVHKQL G+PF+ +ATL+MR
Sbjct: 1250 PHKDLLIRGAVGSGKSTGLPFYLSKRGRVLMLEPTRPLASNVHKQLAGDPFLVSATLKMR 1309

Query: 5510 GCSVFGSSPITVMTSGYALHYFAHNIAQLAEYQFVIIDECHVHDASAMAFRCLLLEYDYQ 5331
            G + FGS+PITVMTSGYA HY+A+N  QL +++F+I DECHV+D+SAMAFR LL EY Y 
Sbjct: 1310 GETTFGSAPITVMTSGYAFHYYANNPNQLRDFEFIIFDECHVNDSSAMAFRSLLAEYTYD 1369

Query: 5330 GKVLKVSATPPGREATFNTQHPVLVKMEESLSFQQFVALQGSGANGDITQNGDNILIYVA 5151
            G+++KVSATPPGRE  F TQHPV +   E L+FQQFVA+QG+GA GD+T  GDNIL+YVA
Sbjct: 1370 GRIIKVSATPPGREVEFTTQHPVEIIPIERLTFQQFVAVQGTGAVGDVTTKGDNILVYVA 1429

Query: 5150 SYNEVDTLSKMLLDKNHKVTKVDGRTMKMGQVEIPTAGTKEKKHFIVATNIIENGVTLDI 4971
            SY+EVD LSK L++K HKVTKVDGRTMK+G VEI T+G++ KKHF+VATNIIENGVTLDI
Sbjct: 1430 SYSEVDNLSKGLVEKGHKVTKVDGRTMKVGGVEIITSGSQAKKHFVVATNIIENGVTLDI 1489

Query: 4970 DVVVDFGMKVVPELDIDNRLIRYSKVAISYGERIQRLGRVGRNKEGVALRIGVTEKGLSA 4791
            DVVVDFG+KVV E+DID+RL RY K +ISYGERIQRLGRVGRNK GVA+R+G TEKGL A
Sbjct: 1490 DVVVDFGLKVVAEVDIDSRLTRYVKKSISYGERIQRLGRVGRNKPGVAVRVGTTEKGLQA 1549

Query: 4790 VPNVTATEAAFYCFAYGLPVMTSGVAVSMLSNCTVNQARTMMHFELPLFYMVHMVRFDGS 4611
            +P  TATEAAF CFAYGLPVMT+ V+ ++L+NCTV QARTMM FE+  FYM H VRFDG+
Sbjct: 1550 IPVTTATEAAFLCFAYGLPVMTNNVSTNILTNCTVLQARTMMLFEINPFYMCHFVRFDGT 1609

Query: 4610 MHPELHKCLKDYKLRDSEIILNKMAIPSSGVKSWMTAGEYSRLGARNSIEEFVRIPFYAR 4431
            MHPE+H+ L  YKLRDSEIILNK+AIP+ G+  W TA EY+  G + +I + VR+PF++ 
Sbjct: 1610 MHPEVHRILTPYKLRDSEIILNKVAIPNKGLMQWPTAKEYAYQGFKMNIPDTVRLPFHSL 1669

Query: 4430 DIPDKVHERVWEVVVTFKRDAGFGKIQSASACKVAYTLQTDAASIPRTICIIEELIKNEV 4251
            DIP+++HER+W++V T K DAGFG+I +ASACK+AYTL+TDAASI RTI I+++LI+NE+
Sbjct: 1670 DIPERLHERMWQIVETHKGDAGFGRITTASACKIAYTLKTDAASIQRTIHILDKLIENEL 1729

Query: 4250 KKQEYFQVASGVDCGSG-FSLINITNALRSRHMSNHTAENIAILEAAKNQIYEFRNLGID 4074
            KKQEYF+  +   C S  FSL  ITNA+R+RH+ +HT EN+++L+AAK+QI EF+N+  D
Sbjct: 1730 KKQEYFRNITSASCSSSSFSLTTITNAIRARHIKDHTVENVSVLQAAKSQILEFKNVTFD 1789

Query: 4073 PSS-KTVCDFGALECVQFQSAEGVSKQLKLKGHWNKSLITKDLLVAGFTLFGGLWMLYNH 3897
                  + ++GALECVQFQ+ E +++ L+LKGHWNKSL+T D+++ G  L G + M+ ++
Sbjct: 1790 LDHVNRMTEYGALECVQFQTLESMTQHLQLKGHWNKSLLTHDVVICGAVLIGCVLMVGSY 1849

Query: 3896 FKRAATTLVE-------FQASGKRQSQKRRFQIARNHKHAYEVNPDQTDVEHYFGEAYAK 3738
            FK   + +V+       FQA  KRQ Q+ RF+ AR++KHAYEV+ D  D++ YFG AY K
Sbjct: 1850 FKERCSGVVKRYNENVKFQAKNKRQRQRLRFREARDNKHAYEVHGDDADIQTYFGSAYTK 1909

Query: 3737 KPQQKGRTKGMGAKSRRFYNIYGFDPAEYTFARYVDPLTGYTLDENALTDARLVQEHFGK 3558
            K + KG T+GMG K+R+F N+Y FDP EY+FARYVDPLTGYTLDE  LTD  LVQ+HFG+
Sbjct: 1910 KGKTKGVTRGMGIKTRKFVNMYNFDPTEYSFARYVDPLTGYTLDEQTLTDIALVQDHFGR 1969

Query: 3557 IRLELREQDKLDAQALMANQKIEAYFVKDLAKQILKIDMTPHRPLELGCKTSTIAGYPER 3378
            IR +L E  +L+ ++L  N ++E YFVK+LA QILKIDMTPH PL +  +  T+AG+PER
Sbjct: 1970 IRRKLMEDGELEKESLAQNARLEVYFVKNLASQILKIDMTPHNPLRVCDRIETVAGFPER 2029

Query: 3377 EGELRQAAPHVIVDASVLPKQNEYTS-EGAEFESKATYQGLRDYNSISSSICLLENDSDG 3201
            + ELRQ+   V+V A+ LPK+N Y   E  EFE+K+T+ GLRDYN I++ +C LE++SDG
Sbjct: 2030 DMELRQSGKSVMVTAAELPKENPYPEGEIVEFENKSTFHGLRDYNPIATCVCRLEHNSDG 2089

Query: 3200 YTMKIHGIGFGSMIITNQHLFKRNNGSLKIQSHRGEFLVPNTTQLKMYPFEGRDLLLIQM 3021
            +T  ++GIG+GS IITNQHLF RNNG++ I+SH G + + N+TQL++YP EGRD+++IQ+
Sbjct: 2090 HTSSLYGIGYGSYIITNQHLFIRNNGTINIESHHGTYHIRNSTQLQLYPIEGRDIVIIQL 2149

Query: 3020 PKDFPPFPQKLKFRLPVSGERVCLIGSNFQEKYISSTVSESSVIAQKDNTSFFRHWITTQ 2841
            PKDFPPF ++LKFR P + ++VCL+G+NFQEK  +STVSE+S+I +KD++ FFRHWI+T+
Sbjct: 2150 PKDFPPFARRLKFRHPTTTDKVCLVGTNFQEKTTTSTVSEASLITRKDDSHFFRHWISTK 2209

Query: 2840 KGHCGLPLVSVKDGHILGIHSMTSLEDSSSFFISLPPDIGPKYLQNEENIEWTKKWRLNL 2661
             G CGLP VS KDG +LG+HS+TSL + S+FFI+ P D    YL+    + W K W+LN+
Sbjct: 2210 DGQCGLPAVSTKDGCVLGLHSLTSLVNDSNFFIAFPDDFEKNYLERANELNWVKHWKLNV 2269

Query: 2660 ELINWGAFKLSNEKPDNLFKLSKDIFELLDEPVDFQAKEGGWLYDRLGGNITAMARTSNQ 2481
            + I WGA  L  +KP N+FKLSKDI  L  EPV  Q++E  WL+DRL GN+ AMART NQ
Sbjct: 2270 DKICWGALSLEKDKPSNMFKLSKDIQRLDMEPVGLQSREDKWLFDRLNGNLKAMARTRNQ 2329

Query: 2480 LVTKHVVKGQCLLFQTYLETHPEASNFFKPLMGFYQKSRLNKEAYIKDLFKYNAPTTVGV 2301
            LVTKHVVKG+CLLF+TYL   P+A  +F P+MG YQKSRLNKEAYIKDLFKY++P  VG 
Sbjct: 2330 LVTKHVVKGKCLLFETYLNVTPKAKEYFTPMMGAYQKSRLNKEAYIKDLFKYSSPIVVGD 2389

Query: 2300 LNPHVFELAEESVYNMFVGIGFQKCVYVTDQEAIFSALNMKAATGALYQGKKKEYFENFT 2121
            ++   FE A +SV  +F G GF +C YVTD++ IFSALNM AA GA+Y GKK++YF++FT
Sbjct: 2390 VDCAAFEAACDSVTQLFEGAGFGRCNYVTDEQEIFSALNMNAAVGAMYSGKKRDYFKDFT 2449

Query: 2120 EADKAQILKDSCFRLYTGKLGVWNGSLKAELRPLEKVQANKTRSFTAAPIDTLLGGKVCV 1941
            + DK  IL+DSC RLY GK+GVWNGSLKAELR  EKV  NKTR+FTAAP+DTLLGGK CV
Sbjct: 2450 DLDKESILRDSCLRLYQGKMGVWNGSLKAELRAKEKVDLNKTRTFTAAPVDTLLGGKTCV 2509

Query: 1940 DDFNNQFYSLNLKAPWSVGMTKFYGGWNTLIRSLPEGWIYCDADGSQFDSSLTPYLINAV 1761
            DDFNN+FYSLN+  PWSVGMTKFY GW+ ++R LPEGW+YCDADGSQFDSSL+PYLINAV
Sbjct: 2510 DDFNNRFYSLNIACPWSVGMTKFYKGWDEMLRKLPEGWVYCDADGSQFDSSLSPYLINAV 2569

Query: 1760 LNLRLRFMEDWDVGTQMLENLYTEIVYTPIATPDGTIVKKYKGNNSGQPSTVVDNTIMVI 1581
            LNLRL FME+WDVG QML+NLYTEI+YTPIATPDGTI+KK+KGNNSGQPSTVVDNTIMVI
Sbjct: 2570 LNLRLHFMEEWDVGAQMLQNLYTEIIYTPIATPDGTIIKKFKGNNSGQPSTVVDNTIMVI 2629

Query: 1580 LAMHYASGLYNSDVAITEYCVFFVNGDDLIIAVHPDHQAFLDGLKESFTHLGLKYDFSNR 1401
            LA+HY+         + E+C +FVNGDDL++AV P+ +  LD    +F  LGL YDFS+R
Sbjct: 2630 LAIHYSYKYLKITKPLDEFCKYFVNGDDLLLAVAPEFEYLLDHFANTFQQLGLNYDFSSR 2689

Query: 1400 CQSREDLWFMSHKAILSGDIYIPKLEEERIVSILEWDRAILPEHRLEAICASMIEAWGYP 1221
             ++RE+LWFMSH+ I++  +YIPKLE ERIVSILEWDRA+ P HRLEAICASMIEAWGYP
Sbjct: 2690 TKNREELWFMSHRGIMTDGLYIPKLEPERIVSILEWDRAVEPVHRLEAICASMIEAWGYP 2749

Query: 1220 DLLYQIRRFYYWVLEQAPYNHLSQTGKAPYISEAALKNLYTNQ-SSPSELQRYVDSLEWN 1044
             LL++IR+FYYWVLEQAPY+ L+Q GKAPY+SEAAL+ LYT + +S  EL+RY+ +L   
Sbjct: 2750 QLLHEIRKFYYWVLEQAPYSELAQLGKAPYLSEAALRALYTGEATSQDELERYLAAL--- 2806

Query: 1043 NLTGE----EAVEFQGTEDESLNAGDQTKKT----SEAKGKDNKEKALETRPKDKDVDVG 888
            NL GE    E V FQ  E  +  A   T+ +     EA      +++ E R +D+DVD G
Sbjct: 2807 NLEGECGGAEIVAFQANETLNTGASSSTQASRSTRPEAAIDVAPQQSSEARVRDRDVDAG 2866

Query: 887  TSGIYQVPKLKAIGTKFCLPKVKGRTIVNLDHLISYEPEQINLSNARATQSQFAQWYNGV 708
            T G YQ+P+LKA+ TK  +PKVKGR IVN  HL++Y P+Q ++SN R+TQ QF  WYN V
Sbjct: 2867 TVGTYQIPRLKALATKINVPKVKGRMIVNTGHLVNYNPDQTDISNTRSTQKQFEAWYNAV 2926

Query: 707  KDAYELDDNSMGIVMSGLMVWCIENGTSPNINGQWTMMDGDEQVEYPLKPVVENAQPSLR 528
            KD Y L+D SM + M+GLMVWCIENGTSPN+NG W MMDGD+QVE+PL+P++E+A+P+LR
Sbjct: 2927 KDEYGLNDESMALAMNGLMVWCIENGTSPNVNGVWLMMDGDQQVEFPLRPILEHAKPTLR 2986

Query: 527  QIMAHFSALAEAYIEKRNATKPYMPRYGLLRNLRDSSLARYAFDFYEVTSRTPPRAREAH 348
            QIMAHFS LAEAYIEK+N  KPYMPRYGL RNL D +LAR+AFDFYEVTSRTP RA+EAH
Sbjct: 2987 QIMAHFSNLAEAYIEKQNLEKPYMPRYGLQRNLTDFNLARFAFDFYEVTSRTPARAKEAH 3046

Query: 347  LQMKAAAIRNSSTKMFGLDGNAGDKEEDTERHTANDVSKNMHSLMGVRM 201
             QMK AA+R   +K+FGLDG    ++EDTERHTA+DV+KNMHSL+G+ M
Sbjct: 3047 FQMKTAALRGKQSKLFGLDGKVNTQDEDTERHTADDVNKNMHSLLGISM 3095


>emb|CAJ15516.1| polyprotein [Lily mottle virus]
          Length = 3096

 Score = 3256 bits (8442), Expect = 0.0
 Identities = 1600/2927 (54%), Positives = 2137/2927 (73%), Gaps = 20/2927 (0%)
 Frame = -1

Query: 8921 NLVRAVANIQKRTGVVIELISNRRKVTANRLLKDNKRYVRVVTKHELGYRHKCDVRTGQW 8742
            +L+RA+A I  +  + IE++ + RKV A  + +D   Y++V   H  G R + D++   +
Sbjct: 175  SLMRAIAKIGAKNSIRIEIV-DERKVQARYIKRDAGSYLQVRVAHHEGLRRRRDLKLSAF 233

Query: 8741 DRIVLKQLVEKSSGRLKHRADEFTPGSSGIALLSDKIDGQVSTSRGGVFIIRGRDGSKLY 8562
                L QL   + G   H   +   G SGI LL+ ++ G  S S   +F++RG    KLY
Sbjct: 234  ADQCLTQLASTTHGTKYHHVTQLKAGDSGIVLLARRLFGWHSGSCSQIFVVRGNHEGKLY 293

Query: 8561 DSQCVVTTHVAARMHHYS-VSERFWKGYDRGF-QMARGPTDHTCDSNLDVEECGLVAAIA 8388
            +++  VT  +  +M HYS   ++FW G++  F ++      HTC SN +V ECG VAA+ 
Sbjct: 294  EARRKVTLTMTHKMIHYSRPGDKFWAGFNSQFLRIKPKEIPHTCTSNFNVFECGQVAALM 353

Query: 8387 TQALFPCGKITCQQCVDKFTSSGKSELREEHSARLEELIGRIQKNHPKFKHVIQXXXXXX 8208
             QAL+PCG+ITCQQC  ++    K EL E+ S  L     +I++NH +F HV        
Sbjct: 354  CQALYPCGRITCQQCASEYLELTKVELGEKLSDGLYRTSSQIRENHREFAHVAHILNVIA 413

Query: 8207 XXXXXXXXNVDQFSEVNRMIGERQETPFKQLADLNNLMIKIGSCTSEEVALGTAKILEIV 8028
                    N++ F+EV+++IGER ++PF  L  LN+++IK    +S E+   +  I E+ 
Sbjct: 414  DLLSLKNNNMEAFTEVHKLIGERTQSPFTHLNRLNSILIKGSDLSSNELYECSDCIRELA 473

Query: 8027 RFQRNRTDNIAKGSLAHFRNKVSSKVHVNLDLMCDNQLDDDGNFRWRQRAYHAKRLFSNF 7848
            RFQ+NRTDNI K  ++ FRNK SSK + NLDLMCDNQLD +GNF W QR YHAKR  SN+
Sbjct: 474  RFQKNRTDNIKKLDVSVFRNKASSKSYFNLDLMCDNQLDKNGNFEWGQRGYHAKRFLSNY 533

Query: 7847 FDVIDPANGYDQFIKRKNPNGMRKTAIGNLIVSTNMQTFRQQMRGEPMESVPLSNACTSR 7668
            F+V++  N Y +   RK+PNG R+ AIG  IVSTN + FR+ M G+ +  +P++ AC S+
Sbjct: 534  FEVVNTQNAYREHTLRKHPNGTRELAIGKFIVSTNFEVFRKSMEGKRIPQMPVTEACLSQ 593

Query: 7667 LKGGFVYPCCCVTTDEGTPIESDMMIPTKDHLVIGNTGDSKFVNMPRMV-EGMYIAKQGY 7491
                F+Y CCCVT ++GTP+ES   +PTK+ LV+GNTGD KFV+MP    E MYIA++GY
Sbjct: 594  RGERFIYQCCCVTNEDGTPLESTFKMPTKNTLVLGNTGDEKFVDMPTDTDEKMYIAREGY 653

Query: 7490 CYVNIFLAMLINVSDAQSKDYTKKVRDIVIPKLGEWPTLLDVATMCHFLTVFYPDVKSAE 7311
            CY+NIF AMLINV ++Q+K +TK VRD ++P+LG WPT++DVAT CH LTVF+PD  SAE
Sbjct: 654  CYINIFFAMLINVRESQAKAFTKMVRDRLVPELGTWPTMIDVATACHTLTVFFPDTLSAE 713

Query: 7310 LPRILVDHRNQIMHVIDSFGSLTTGYHILKANTVGQLVKFSNDELQSEMMHYRVGGTMMS 7131
            LPRILVDH  + MHVIDS+GS++TGYH LKANTV QLV F++D L+SEM HY+VGG   +
Sbjct: 714  LPRILVDHNTKTMHVIDSYGSVSTGYHQLKANTVSQLVLFASDTLKSEMKHYQVGGRKFT 773

Query: 7130 EESSEDAAVTLLARGVYRPTELKRVLEKDPLLLVYGLLSPRVLIAMHKSKTLEMALDQWL 6951
             E     AV LL + +YRP  ++ ++E +P L+   + SP VLIA+  S +LE A++ W+
Sbjct: 774  VEYE---AVKLLIKAIYRPKLMRTLMEDEPYLICLAMCSPGVLIALFNSGSLETAINYWI 830

Query: 6950 HKDTSVANLCQMIDVLAKKVSVSKLFRTQQQIISENAMEIARCVDRCRTTSPSRTFVQLV 6771
             +    A +  ++ VLA KVSV++    Q  I+S++A ++ + +DR   T  S + V   
Sbjct: 831  ARHKDTAQIFALLTVLATKVSVARTLTEQLAILSDHATDVLKIMDRTFATQHSVSLVHTF 890

Query: 6770 LTRLVESRNTSKELLSAGFQTLMYEGEEMREKKFSEVLAHSWRDLNWSQRCSAIWHSRKA 6591
            L +L E R+T   L+ +GF  L     E+ EK +   L  SW+DL+  ++CS +  S ++
Sbjct: 891  LMQLEEKRHTDVSLVGSGFANLSATTHELMEKNYLAELDASWQDLSLLEKCSQMRWSFRS 950

Query: 6590 SQHATNSSIEPEQTDSGETWTERFICLRGKLTSHVKVWTTSALSNGKRKAYETCGKVVCK 6411
             Q  +N       TD    +      L  +  ++++    +   N K + ++  G+ VC 
Sbjct: 951  PQQFSNELHPSASTDLNGRYNTSVRALSTRYMNNLRKSVCTKYHNMKIRTHQFIGRQVCN 1010

Query: 6410 LITSTKFFCPDIIKMVNVLSVFCLLLQISTVVNRHLLQYRILKEEQQNMRDDKDFETMMG 6231
             I  +  F PD+ + V++L++F +LL I   +N +  +Y  LK  + +  ++K +  ++ 
Sbjct: 1011 SIMGSSRFFPDLAQCVHILAIFSILLNIIRTINIYTSEYIRLKNCELSQIEEKRWNKLLH 1070

Query: 6230 IYNLYVKTYEGEYPTLKQFSTYLQKVNPQIYAYYERTMGEPDDTDECVELQAKGKGEIEL 6051
             +++  K  +G+ PTL +F+ +L++ +P++Y+ +   + + ++  E V+ QAK  GE  L
Sbjct: 1071 TFDMMEKI-DGQKPTLIEFTKHLKQWDPELYSEFHSILQDEEEDTEEVQFQAKPDGERNL 1129

Query: 6050 ERTIAFVALIMMMFDAERSDCVYKVLNKLRGIMNPISAETVAFQGLDDMKELLGETKMAI 5871
            ER +A +AL MM+FDA+RSDCVYKVLNKL+G++N +  E V FQ +DD+++ L E +M I
Sbjct: 1130 ERIMAIIALTMMVFDADRSDCVYKVLNKLKGLLNTVHQEPVKFQSIDDIQDYLEEREMVI 1189

Query: 5870 DIELDTENHQLNRLGGVTFGDWWTHQLNQNRTVPHYRTEGKFVEFTRANAMIVANEIAHS 5691
            D E+  ++H +N+L G TF  WW++Q+  N  +PHYRTEG F+EFTRANA  VANEIAH 
Sbjct: 1190 DFEISADDHNINKLAGATFEQWWSNQMECNNVLPHYRTEGFFMEFTRANAAHVANEIAHG 1249

Query: 5690 DQTDFLVMGAVGSGKSTGLPFHLSRKGKVLMIEPTKPLAENVHKQLKGNPFMSNATLRMR 5511
               D L+ GAVGSGKSTGLPF+LS++G+VLM+EPT+PLA NVHKQL G+PF+ +ATL+MR
Sbjct: 1250 PHKDLLIRGAVGSGKSTGLPFYLSKRGRVLMLEPTRPLASNVHKQLAGDPFLVSATLKMR 1309

Query: 5510 GCSVFGSSPITVMTSGYALHYFAHNIAQLAEYQFVIIDECHVHDASAMAFRCLLLEYDYQ 5331
            G + FGS+PITVMTSGYA HY+A+N  QL +++F+I DECHV+D+SAMAFR LL EY Y 
Sbjct: 1310 GETTFGSAPITVMTSGYAFHYYANNPNQLRDFEFIIFDECHVNDSSAMAFRSLLAEYTYD 1369

Query: 5330 GKVLKVSATPPGREATFNTQHPVLVKMEESLSFQQFVALQGSGANGDITQNGDNILIYVA 5151
            G+++KVSATPPGRE  F TQHPV +   E L+FQQFVA+QG+GA GD+T  GDNIL+YVA
Sbjct: 1370 GRIIKVSATPPGREVEFATQHPVEIIPIERLTFQQFVAVQGTGAVGDVTTKGDNILVYVA 1429

Query: 5150 SYNEVDTLSKMLLDKNHKVTKVDGRTMKMGQVEIPTAGTKEKKHFIVATNIIENGVTLDI 4971
            SY+EVD LSK L++K HKVTKVDGRTMK+G VEI T+G++ KKHF+VATNIIENGVTLDI
Sbjct: 1430 SYSEVDNLSKGLVEKGHKVTKVDGRTMKVGGVEIITSGSQAKKHFVVATNIIENGVTLDI 1489

Query: 4970 DVVVDFGMKVVPELDIDNRLIRYSKVAISYGERIQRLGRVGRNKEGVALRIGVTEKGLSA 4791
            DVVVDFG+KVV E+DID+RL RY K +ISYGERIQRLGRVGRNK G A+R+G TEKGL A
Sbjct: 1490 DVVVDFGLKVVAEVDIDSRLTRYVKKSISYGERIQRLGRVGRNKPGAAVRVGTTEKGLQA 1549

Query: 4790 VPNVTATEAAFYCFAYGLPVMTSGVAVSMLSNCTVNQARTMMHFELPLFYMVHMVRFDGS 4611
            +P  TATEAAF CFAYGLPVMT+ V+ ++L+NCTV QARTMM FE+  FYM H VRFDG+
Sbjct: 1550 IPVTTATEAAFLCFAYGLPVMTNNVSTNILTNCTVLQARTMMLFEINPFYMCHFVRFDGT 1609

Query: 4610 MHPELHKCLKDYKLRDSEIILNKMAIPSSGVKSWMTAGEYSRLGARNSIEEFVRIPFYAR 4431
            MHPE+H+ L  YKLRDSEIILNK+AIP+ G+  W TA EY+  G + +I + VR+PF++ 
Sbjct: 1610 MHPEVHRILTPYKLRDSEIILNKVAIPNKGLMQWPTAKEYAYQGFKMNIPDTVRLPFHSL 1669

Query: 4430 DIPDKVHERVWEVVVTFKRDAGFGKIQSASACKVAYTLQTDAASIPRTICIIEELIKNEV 4251
            DIP+++HER+W++V T K DAGFG+I +ASACK+AYTL+TDAASI RTI I+++LI+NE+
Sbjct: 1670 DIPERLHERMWQIVETHKGDAGFGRITTASACKIAYTLKTDAASIQRTIHILDKLIENEL 1729

Query: 4250 KKQEYFQVASGVDCGSG-FSLINITNALRSRHMSNHTAENIAILEAAKNQIYEFRNLGID 4074
            KKQEYF+  +   C S  FSL  ITNA+R+RH+ +HT EN+++L+AAK QI EF+N+  D
Sbjct: 1730 KKQEYFRNITSASCSSSSFSLTTITNAIRARHIKDHTVENVSVLQAAKAQILEFKNVTFD 1789

Query: 4073 PSS-KTVCDFGALECVQFQSAEGVSKQLKLKGHWNKSLITKDLLVAGFTLFGGLWMLYNH 3897
                  + ++GALECVQFQ+ E ++  L+LKGHWNKSL+T D+++ G  L G + M+ ++
Sbjct: 1790 LDHVNRMTEYGALECVQFQTLESMTHHLQLKGHWNKSLLTHDVVICGAVLIGCVLMVGSY 1849

Query: 3896 FKRAATTLVE-------FQASGKRQSQKRRFQIARNHKHAYEVNPDQTDVEHYFGEAYAK 3738
            FK   + +V+       FQA  KRQ Q+ RF+ AR++KHAYEV+ D  D++ YFG AY K
Sbjct: 1850 FKERCSGVVKRYNENVKFQAKNKRQRQRLRFREARDNKHAYEVHGDDADIQTYFGSAYTK 1909

Query: 3737 KPQQKGRTKGMGAKSRRFYNIYGFDPAEYTFARYVDPLTGYTLDENALTDARLVQEHFGK 3558
            K + KG T+GMG K+R+F N+Y FDP EY+FARYVDPLTGYTLDE  LTD  LVQ+HFG+
Sbjct: 1910 KGKTKGVTRGMGIKTRKFVNMYNFDPTEYSFARYVDPLTGYTLDEQTLTDIALVQDHFGR 1969

Query: 3557 IRLELREQDKLDAQALMANQKIEAYFVKDLAKQILKIDMTPHRPLELGCKTSTIAGYPER 3378
            IR +L E  +L+ ++L  N ++E YFVK+LA QILKIDMTPH PL +  +  T+AG+PER
Sbjct: 1970 IRRKLMEDGELEKESLAQNARLEVYFVKNLASQILKIDMTPHNPLRVCDRIETVAGFPER 2029

Query: 3377 EGELRQAAPHVIVDASVLPKQNEYTS-EGAEFESKATYQGLRDYNSISSSICLLENDSDG 3201
            +  LRQ+   V+V A+ LPK+N Y   E  EFE+K+T+ GLRDYN I++ +C LE++SDG
Sbjct: 2030 DMGLRQSGKSVMVTAAELPKENPYPGGEIVEFENKSTFHGLRDYNPIATCVCRLEHNSDG 2089

Query: 3200 YTMKIHGIGFGSMIITNQHLFKRNNGSLKIQSHRGEFLVPNTTQLKMYPFEGRDLLLIQM 3021
            +T  ++GIG+GS IITNQHLF RNNG++ I+SH G + + N+TQL++YP EGRD+++IQ+
Sbjct: 2090 HTSSLYGIGYGSYIITNQHLFIRNNGTINIESHHGTYHIRNSTQLQLYPIEGRDIVIIQL 2149

Query: 3020 PKDFPPFPQKLKFRLPVSGERVCLIGSNFQEKYISSTVSESSVIAQKDNTSFFRHWITTQ 2841
            PKDFPPF ++LKFR P + ++VCL+G+NFQEK  +STVSE+S+I +KD++ FFRHWI+T+
Sbjct: 2150 PKDFPPFARRLKFRHPTTTDKVCLVGTNFQEKTTTSTVSEASLITRKDDSHFFRHWISTK 2209

Query: 2840 KGHCGLPLVSVKDGHILGIHSMTSLEDSSSFFISLPPDIGPKYLQNEENIEWTKKWRLNL 2661
             G CGLP VS KDG +LG+HS+TSL + S+FFI+ P D    YL+    + W K W+LN+
Sbjct: 2210 DGQCGLPAVSTKDGCVLGLHSLTSLVNDSNFFIAFPDDFEKNYLERANELNWVKHWKLNV 2269

Query: 2660 ELINWGAFKLSNEKPDNLFKLSKDIFELLDEPVDFQAKEGGWLYDRLGGNITAMARTSNQ 2481
            + I WGA  L  +KP N+FKLSKDI  L  EPV  Q++E  WL+DRL GN+ AMART NQ
Sbjct: 2270 DKICWGALSLEKDKPSNMFKLSKDIQRLDMEPVGLQSREDKWLFDRLNGNLKAMARTRNQ 2329

Query: 2480 LVTKHVVKGQCLLFQTYLETHPEASNFFKPLMGFYQKSRLNKEAYIKDLFKYNAPTTVGV 2301
            LVTKHVVKG+CLLF+TYL   P+A  +F P+MG YQKSRLNKEAYIKDLFKY++P  VG 
Sbjct: 2330 LVTKHVVKGKCLLFETYLNVTPKAKEYFTPMMGAYQKSRLNKEAYIKDLFKYSSPIVVGD 2389

Query: 2300 LNPHVFELAEESVYNMFVGIGFQKCVYVTDQEAIFSALNMKAATGALYQGKKKEYFENFT 2121
            ++   FE A +SV  +F G GF +C YVTD++ IFSALNM AA GA+Y GKK++YF++FT
Sbjct: 2390 VDCAAFEAACDSVTQLFEGAGFGRCNYVTDEQEIFSALNMNAAVGAMYSGKKRDYFKDFT 2449

Query: 2120 EADKAQILKDSCFRLYTGKLGVWNGSLKAELRPLEKVQANKTRSFTAAPIDTLLGGKVCV 1941
            + DK  IL+DSC RLY GK+GVWNGSLKAELR  EKV  NKTR+FTAAP+DTLLG K CV
Sbjct: 2450 DLDKESILRDSCLRLYQGKMGVWNGSLKAELRAKEKVDLNKTRTFTAAPVDTLLGEKTCV 2509

Query: 1940 DDFNNQFYSLNLKAPWSVGMTKFYGGWNTLIRSLPEGWIYCDADGSQFDSSLTPYLINAV 1761
            DDFNN+FYSLN+  PWSVGMTKFY GW+ ++R LPEGW+YCDADGSQFDSSL+PYLINAV
Sbjct: 2510 DDFNNRFYSLNIACPWSVGMTKFYKGWDEMLRKLPEGWVYCDADGSQFDSSLSPYLINAV 2569

Query: 1760 LNLRLRFMEDWDVGTQMLENLYTEIVYTPIATPDGTIVKKYKGNNSGQPSTVVDNTIMVI 1581
            LNLRL FME+WDVG QML+NLYTEI+YTPIATPDGTI+KK+KGNNSGQPSTVVDNTIMVI
Sbjct: 2570 LNLRLHFMEEWDVGAQMLQNLYTEIIYTPIATPDGTIIKKFKGNNSGQPSTVVDNTIMVI 2629

Query: 1580 LAMHYASGLYNSDVAITEYCVFFVNGDDLIIAVHPDHQAFLDGLKESFTHLGLKYDFSNR 1401
            LA+HY+         + E+C +FVNGDD+++AV P+ +  LD    +F  LGL YDFS+R
Sbjct: 2630 LAIHYSYKYLKITKPLDEFCKYFVNGDDILLAVAPEFEYLLDHFANTFQQLGLNYDFSSR 2689

Query: 1400 CQSREDLWFMSHKAILSGDIYIPKLEEERIVSILEWDRAILPEHRLEAICASMIEAWGYP 1221
             ++RE+LWFMSH+ I++  +YIPKLE ERIVSILEWDRA+ P HR EAICASMIEAWGYP
Sbjct: 2690 TKNREELWFMSHRGIMTDGLYIPKLEPERIVSILEWDRAVEPVHRPEAICASMIEAWGYP 2749

Query: 1220 DLLYQIRRFYYWVLEQAPYNHLSQTGKAPYISEAALKNLYTNQ-SSPSELQRYVDSLEW- 1047
             LL++IR+FYYWVLEQAPY+ L+Q GKAPY+SEAAL+ L+T + +S  EL+RY+ +L+  
Sbjct: 2750 QLLHEIRKFYYWVLEQAPYSELAQLGKAPYLSEAALRALFTGEATSQDELERYLAALDLE 2809

Query: 1046 NNLTGEEAVEFQGTEDESLNAGDQTKKTSEAKGKD-----NKEKALETRPKDKDVDVGTS 882
                G E V FQ  E  +  A   T+ +  A+ +        +++ E R +D+DVD GT 
Sbjct: 2810 GECGGAEIVAFQANETLNAGASSSTQTSRPARPETAAVDVAPQQSPEPRVRDRDVDAGTV 2869

Query: 881  GIYQVPKLKAIGTKFCLPKVKGRTIVNLDHLISYEPEQINLSNARATQSQFAQWYNGVKD 702
            G +Q+P+LKA+ TK  +PK++GRTIVNL HL +Y PEQ ++SN R+TQ QF  WYN VKD
Sbjct: 2870 GTFQIPRLKALATKISIPKIRGRTIVNLGHLANYNPEQTDISNTRSTQKQFETWYNAVKD 2929

Query: 701  AYELDDNSMGIVMSGLMVWCIENGTSPNINGQWTMMDGDEQVEYPLKPVVENAQPSLRQI 522
             Y L+D SM + M+GLMVWCIENGTSPNING W MMDGD+QVE+PL+P++E+A+P+LRQI
Sbjct: 2930 EYGLNDESMALTMNGLMVWCIENGTSPNINGAWLMMDGDQQVEFPLRPIIEHAKPTLRQI 2989

Query: 521  MAHFSALAEAYIEKRNATKPYMPRYGLLRNLRDSSLARYAFDFYEVTSRTPPRAREAHLQ 342
            MAHFS LAEAYIEK+NA KPYMPRYGL RNL D +LAR+AFDFYEVTSRTP RA+EAH Q
Sbjct: 2990 MAHFSHLAEAYIEKQNAEKPYMPRYGLQRNLTDFTLARFAFDFYEVTSRTPARAKEAHFQ 3049

Query: 341  MKAAAIRNSSTKMFGLDGNAGDKEEDTERHTANDVSKNMHSLMGVRM 201
            MK AA+R   +K+FGLDG    ++EDTERHTA+DV+KNMH L+G+ M
Sbjct: 3050 MKTAALRGKQSKLFGLDGKVTTQDEDTERHTADDVNKNMHPLLGISM 3096


>ref|NP_945133.1| polyprotein [Lily mottle virus] gi|38707331|emb|CAD92110.1|
            polyprotein [Lily mottle virus]
          Length = 3095

 Score = 3253 bits (8434), Expect = 0.0
 Identities = 1599/2926 (54%), Positives = 2132/2926 (72%), Gaps = 19/2926 (0%)
 Frame = -1

Query: 8921 NLVRAVANIQKRTGVVIELISNRRKVTANRLLKDNKRYVRVVTKHELGYRHKCDVRTGQW 8742
            +L+RA+A I  +  + +E++  RR V A  + +D   Y++V   H  G R + D++   +
Sbjct: 175  SLMRAIAKIGAKNSMKVEIVDERR-VQARYIKRDAGSYLQVRVAHHEGLRRRRDLKLSAF 233

Query: 8741 DRIVLKQLVEKSSGRLKHRADEFTPGSSGIALLSDKIDGQVSTSRGGVFIIRGRDGSKLY 8562
                L QL   + G   H   +   G SGI LL+ ++ G  S S   +F++RG    KLY
Sbjct: 234  ADQCLTQLASTTHGTKYHHVTQIKAGDSGIVLLARRLSGWHSGSCSQIFVVRGNHEGKLY 293

Query: 8561 DSQCVVTTHVAARMHHYS-VSERFWKGYDRGF-QMARGPTDHTCDSNLDVEECGLVAAIA 8388
            +++  VT  +  RM HYS   ++FW G++  F ++      HTC SN +V ECG VAA+ 
Sbjct: 294  EARRKVTLTMTHRMIHYSGPGDKFWAGFNSQFLRIKPKEIPHTCTSNFNVFECGQVAALM 353

Query: 8387 TQALFPCGKITCQQCVDKFTSSGKSELREEHSARLEELIGRIQKNHPKFKHVIQXXXXXX 8208
             QAL+PCG+ITCQQC  ++    K EL E+ S  L     +I++NH +F HV        
Sbjct: 354  CQALYPCGRITCQQCASEYLELTKVELGEKLSDGLYRTSSQIRENHQEFAHVAHILNVIA 413

Query: 8207 XXXXXXXXNVDQFSEVNRMIGERQETPFKQLADLNNLMIKIGSCTSEEVALGTAKILEIV 8028
                    N++ F+EV+++IGE+ ++PF  L  LN+++IK    +S E+   +  I E+ 
Sbjct: 414  DLLSLKNNNMEAFTEVHKLIGEQTQSPFTHLNRLNSILIKGSDMSSNELYECSDCIRELA 473

Query: 8027 RFQRNRTDNIAKGSLAHFRNKVSSKVHVNLDLMCDNQLDDDGNFRWRQRAYHAKRLFSNF 7848
            RFQ+NRTDNI K  ++ FRNK SSK + NLDLMCDNQLD +GNF W QR YHAKR  SN+
Sbjct: 474  RFQKNRTDNIKKLDVSVFRNKASSKSYFNLDLMCDNQLDKNGNFEWGQRGYHAKRFLSNY 533

Query: 7847 FDVIDPANGYDQFIKRKNPNGMRKTAIGNLIVSTNMQTFRQQMRGEPMESVPLSNACTSR 7668
            F+V++  N Y +   RK+PNG R+ AIG  IVSTN + FR+ M G+ +  +P++ AC S+
Sbjct: 534  FEVVNTQNAYREHTLRKHPNGTRELAIGKFIVSTNFEVFRKSMEGKRIPQMPVTEACLSQ 593

Query: 7667 LKGGFVYPCCCVTTDEGTPIESDMMIPTKDHLVIGNTGDSKFVNMPRMV-EGMYIAKQGY 7491
                F+  CCCVT ++GTP+ES   +PTK+ LV+GNTGD KFV+MP    E MYIA++GY
Sbjct: 594  RGERFICQCCCVTNEDGTPLESTFKMPTKNTLVLGNTGDEKFVDMPTDTDEKMYIAREGY 653

Query: 7490 CYVNIFLAMLINVSDAQSKDYTKKVRDIVIPKLGEWPTLLDVATMCHFLTVFYPDVKSAE 7311
            CY+NIF AMLINV ++Q+K +TK VRD ++P+LG WPT++DVAT CH LTVF+PD  SAE
Sbjct: 654  CYINIFFAMLINVRESQAKAFTKMVRDRLVPELGTWPTMIDVATACHTLTVFFPDTLSAE 713

Query: 7310 LPRILVDHRNQIMHVIDSFGSLTTGYHILKANTVGQLVKFSNDELQSEMMHYRVGGTMMS 7131
            LPRILVDH  + MHVIDS+GS++TGYH LKANTV QLV F++D L+SEM HY+VGG   +
Sbjct: 714  LPRILVDHNTKTMHVIDSYGSVSTGYHQLKANTVSQLVLFASDTLKSEMKHYQVGGKKFT 773

Query: 7130 EESSEDAAVTLLARGVYRPTELKRVLEKDPLLLVYGLLSPRVLIAMHKSKTLEMALDQWL 6951
             E     AV LL + +YRP  +  ++E +P L+   + SP VLIA+  S +LE A++ W+
Sbjct: 774  VEYE---AVKLLIKAIYRPKLMWTLMEDEPYLICLAMCSPGVLIALFNSGSLETAINYWV 830

Query: 6950 HKDTSVANLCQMIDVLAKKVSVSKLFRTQQQIISENAMEIARCVDRCRTTSPSRTFVQLV 6771
             +    A +  ++ VLA KVSV+     Q  ++S++A ++ R +DR   T  S + V   
Sbjct: 831  ARHKDTAQIFALLTVLATKVSVAHTLTEQLALLSDHATDVLRIMDRTFATQHSVSLVHTF 890

Query: 6770 LTRLVESRNTSKELLSAGFQTLMYEGEEMREKKFSEVLAHSWRDLNWSQRCSAIWHSRKA 6591
            L +L E R+T   L+ +GF  L     E+ EK +   L  SWRDL+  ++CS +  S ++
Sbjct: 891  LMQLEEKRHTDVSLVGSGFSNLCATTHELMEKNYLAELDASWRDLSLLEKCSQMRWSFQS 950

Query: 6590 SQHATNSSIEPEQTDSGETWTERFICLRGKLTSHVKVWTTSALSNGKRKAYETCGKVVCK 6411
             Q  +N       TD    +      L  +  ++++    +   N K + ++  G+ VC 
Sbjct: 951  PQQFSNELHPSASTDLNGRYNTSVRALSTRYMNNLRKSVCTKYHNMKIRTHQFIGRQVCN 1010

Query: 6410 LITSTKFFCPDIIKMVNVLSVFCLLLQISTVVNRHLLQYRILKEEQQNMRDDKDFETMMG 6231
             I     F PD+ + V++L++F ++L I   +N +  +Y  LK  + +  ++K +  ++ 
Sbjct: 1011 SIMGPSGFFPDLARCVHILAIFSIMLNIIRTINIYTSEYIRLKNCELSQIEEKRWNKLLH 1070

Query: 6230 IYNLYVKTYEGEYPTLKQFSTYLQKVNPQIYAYYERTMGEPDDTDECVELQAKGKGEIEL 6051
             +++  K  +G+ PTL +F+ +L++ +P++Y+ +   + + ++  E V+ QAK  GE  L
Sbjct: 1071 TFDMMEKI-DGQKPTLIEFTKHLKQWDPELYSEFHSILQDEEEDTEEVQFQAKPDGERNL 1129

Query: 6050 ERTIAFVALIMMMFDAERSDCVYKVLNKLRGIMNPISAETVAFQGLDDMKELLGETKMAI 5871
            ER +A +AL MM+FDA+RSDCVYKVLNKL+G++N +  E V FQ +DD+++LL E +M I
Sbjct: 1130 ERIMAIIALTMMVFDADRSDCVYKVLNKLKGLLNTVHQEPVKFQSIDDIQDLLEEREMVI 1189

Query: 5870 DIELDTENHQLNRLGGVTFGDWWTHQLNQNRTVPHYRTEGKFVEFTRANAMIVANEIAHS 5691
            D E+  ++H +N+L G TF  WW++Q+  N  +PHYRTEG F+EFTRANA  VANEIAH 
Sbjct: 1190 DFEISADDHNINKLAGATFEQWWSNQMECNNVLPHYRTEGFFMEFTRANAAHVANEIAHG 1249

Query: 5690 DQTDFLVMGAVGSGKSTGLPFHLSRKGKVLMIEPTKPLAENVHKQLKGNPFMSNATLRMR 5511
               D L+ GAVGSGKSTGLPF+LS++G+VLM+EPT+PLA NVHKQL G+PF+ +ATL+MR
Sbjct: 1250 PHKDLLIRGAVGSGKSTGLPFYLSKRGRVLMLEPTRPLASNVHKQLAGDPFLVSATLKMR 1309

Query: 5510 GCSVFGSSPITVMTSGYALHYFAHNIAQLAEYQFVIIDECHVHDASAMAFRCLLLEYDYQ 5331
            G + FGS+PITVMTSGYA HY+A+N  QL +++F+I DECHV+D+SAMAFR LL EY Y 
Sbjct: 1310 GETTFGSAPITVMTSGYAFHYYANNPNQLRDFEFIIFDECHVNDSSAMAFRSLLAEYTYD 1369

Query: 5330 GKVLKVSATPPGREATFNTQHPVLVKMEESLSFQQFVALQGSGANGDITQNGDNILIYVA 5151
            G+++KVSATPPGRE  F TQHPV +   E L+FQQFVA+QG+GA GD+T  GDNIL+YVA
Sbjct: 1370 GRIIKVSATPPGREVEFTTQHPVEIIPIERLTFQQFVAVQGTGAVGDVTTKGDNILVYVA 1429

Query: 5150 SYNEVDTLSKMLLDKNHKVTKVDGRTMKMGQVEIPTAGTKEKKHFIVATNIIENGVTLDI 4971
            SY+EVD LSK L++K HKVTKVDGRTMK+G VEI T+G++ KKHF+VATNIIENGVTLDI
Sbjct: 1430 SYSEVDNLSKGLVEKGHKVTKVDGRTMKVGGVEIITSGSQAKKHFVVATNIIENGVTLDI 1489

Query: 4970 DVVVDFGMKVVPELDIDNRLIRYSKVAISYGERIQRLGRVGRNKEGVALRIGVTEKGLSA 4791
            DVVVDFG+KVV E+DID+RL RY K +ISYGE IQRLGRVGRNK GVA+R+G TEKGL A
Sbjct: 1490 DVVVDFGLKVVAEVDIDSRLTRYIKKSISYGELIQRLGRVGRNKPGVAVRVGTTEKGLQA 1549

Query: 4790 VPNVTATEAAFYCFAYGLPVMTSGVAVSMLSNCTVNQARTMMHFELPLFYMVHMVRFDGS 4611
            +P  TATEAAF CFAYGLPVMT+ V+ ++L+NCTV QARTMM FE+  FYM H VRFDG+
Sbjct: 1550 IPVTTATEAAFLCFAYGLPVMTNNVSTNILTNCTVLQARTMMLFEINPFYMCHFVRFDGT 1609

Query: 4610 MHPELHKCLKDYKLRDSEIILNKMAIPSSGVKSWMTAGEYSRLGARNSIEEFVRIPFYAR 4431
            MHPE+H+ L  YKLRDSEIILNK+AIP+  +  W TA EY+  G R +I + VR+PF++ 
Sbjct: 1610 MHPEVHRILTPYKLRDSEIILNKVAIPNKCLMQWPTAKEYAYQGFRMNIPDTVRLPFHSM 1669

Query: 4430 DIPDKVHERVWEVVVTFKRDAGFGKIQSASACKVAYTLQTDAASIPRTICIIEELIKNEV 4251
            DIP+++HER+W++V T K DAGFG+I +ASACK+AYTL+TD ASI RTI I+++LI+NE+
Sbjct: 1670 DIPERLHERMWQIVETHKGDAGFGRITTASACKIAYTLRTDVASIQRTIHILDKLIENEL 1729

Query: 4250 KKQEYFQVASGVDCGSG-FSLINITNALRSRHMSNHTAENIAILEAAKNQIYEFRNLGID 4074
            KKQEYF+  +   C S  FSL  ITNA+R+RH+ +HT EN+++L+AAK QI EF+N+  D
Sbjct: 1730 KKQEYFRNITSASCSSSSFSLTTITNAIRARHIKDHTVENVSVLQAAKAQILEFKNVTFD 1789

Query: 4073 PSS-KTVCDFGALECVQFQSAEGVSKQLKLKGHWNKSLITKDLLVAGFTLFGGLWMLYNH 3897
                  + ++GALECVQFQ+ E +++ L+LKGHWNKSL+T D+++ G  L G + M+ ++
Sbjct: 1790 LDHVNRMTEYGALECVQFQTLESMAQHLQLKGHWNKSLLTHDVVICGAVLLGCVLMVGSY 1849

Query: 3896 FKRAATTLVE-------FQASGKRQSQKRRFQIARNHKHAYEVNPDQTDVEHYFGEAYAK 3738
            FK   + +V+       FQA  KRQ Q+ RF+ AR++KHAYEV+ D  D++ YFG AY K
Sbjct: 1850 FKERCSGVVKRYNENVKFQAKNKRQRQRLRFREARDNKHAYEVHGDDADIQTYFGSAYTK 1909

Query: 3737 KPQQKGRTKGMGAKSRRFYNIYGFDPAEYTFARYVDPLTGYTLDENALTDARLVQEHFGK 3558
            K + KG T+GMG K+R+F N+Y FDP EY+FARYVDPLTGYTLDE +LTD  LVQ+HFG+
Sbjct: 1910 KGKTKGVTRGMGIKTRKFVNMYNFDPTEYSFARYVDPLTGYTLDEQSLTDIALVQDHFGR 1969

Query: 3557 IRLELREQDKLDAQALMANQKIEAYFVKDLAKQILKIDMTPHRPLELGCKTSTIAGYPER 3378
            IR +L E  +L+ ++L  N ++E YFVK+LA QILKIDMTPH PL +     T+AG+PER
Sbjct: 1970 IRRKLMEDGELEKESLAKNARLEVYFVKNLASQILKIDMTPHNPLRVCDHIETVAGFPER 2029

Query: 3377 EGELRQAAPHVIVDASVLPKQNEYTS-EGAEFESKATYQGLRDYNSISSSICLLENDSDG 3201
            + ELRQ+   V+V A+ LPK+N Y   E  EFE+K+T+ GLRDYN I++ +C LE++SDG
Sbjct: 2030 DMELRQSGKSVMVTAAELPKENPYPEGEIVEFENKSTFHGLRDYNPIATCVCRLEHNSDG 2089

Query: 3200 YTMKIHGIGFGSMIITNQHLFKRNNGSLKIQSHRGEFLVPNTTQLKMYPFEGRDLLLIQM 3021
            +T  ++GIG+GS IITNQHLF RNNG++ I+SH G + + N+TQL++YP EGRD+++IQ+
Sbjct: 2090 HTSSLYGIGYGSYIITNQHLFIRNNGTINIESHHGTYHIRNSTQLQLYPIEGRDIVIIQL 2149

Query: 3020 PKDFPPFPQKLKFRLPVSGERVCLIGSNFQEKYISSTVSESSVIAQKDNTSFFRHWITTQ 2841
            PKDFPPF ++LKFR P + ++VCL+G+NFQEK  +STVSE+S+I +KD++ FFRHWI+ +
Sbjct: 2150 PKDFPPFARRLKFRHPTTTDKVCLVGTNFQEKTTTSTVSEASLITRKDDSHFFRHWISAK 2209

Query: 2840 KGHCGLPLVSVKDGHILGIHSMTSLEDSSSFFISLPPDIGPKYLQNEENIEWTKKWRLNL 2661
             G CGLP VS KDG +LG+HS+TSL + S+FFI+ P D    YL+    + W K W+LN+
Sbjct: 2210 DGQCGLPAVSTKDGCVLGLHSLTSLVNDSNFFIAFPDDFEKNYLERANELNWVKHWKLNV 2269

Query: 2660 ELINWGAFKLSNEKPDNLFKLSKDIFELLDEPVDFQAKEGGWLYDRLGGNITAMARTSNQ 2481
            + I WGA  L  +KP N+FKLSKDI  L  EPV  Q++E  WL+DRL GN+ AMART NQ
Sbjct: 2270 DKICWGALSLEKDKPSNMFKLSKDIQRLDMEPVGLQSREDKWLFDRLNGNLKAMARTRNQ 2329

Query: 2480 LVTKHVVKGQCLLFQTYLETHPEASNFFKPLMGFYQKSRLNKEAYIKDLFKYNAPTTVGV 2301
            LVTKHVVKG+CLLF+TYL   P+A  +F P+MG YQKSRLNKEAYIKDLFKY++P  VG 
Sbjct: 2330 LVTKHVVKGKCLLFETYLNVTPKAKEYFTPMMGAYQKSRLNKEAYIKDLFKYSSPIVVGD 2389

Query: 2300 LNPHVFELAEESVYNMFVGIGFQKCVYVTDQEAIFSALNMKAATGALYQGKKKEYFENFT 2121
            ++   FE A +SV  +F G GF +C YVTD++ IFSALNM AA GA+Y GKK++YF++FT
Sbjct: 2390 VDCAAFEAACDSVTQLFEGAGFGRCNYVTDEQEIFSALNMNAAVGAMYSGKKRDYFKDFT 2449

Query: 2120 EADKAQILKDSCFRLYTGKLGVWNGSLKAELRPLEKVQANKTRSFTAAPIDTLLGGKVCV 1941
            + DK  IL+DSC RLY GK+GVWNGSLKAELR  EKV  NKTR+FTAAP+DTLLGGK CV
Sbjct: 2450 DLDKESILRDSCLRLYQGKMGVWNGSLKAELRAKEKVDLNKTRTFTAAPVDTLLGGKTCV 2509

Query: 1940 DDFNNQFYSLNLKAPWSVGMTKFYGGWNTLIRSLPEGWIYCDADGSQFDSSLTPYLINAV 1761
            DDFNN+FYSLN+  PWSVGMTKFY GW+ ++R LPEGW+YCDADGSQFDSSL+PYLINAV
Sbjct: 2510 DDFNNRFYSLNIACPWSVGMTKFYKGWDEMLRKLPEGWVYCDADGSQFDSSLSPYLINAV 2569

Query: 1760 LNLRLRFMEDWDVGTQMLENLYTEIVYTPIATPDGTIVKKYKGNNSGQPSTVVDNTIMVI 1581
            LNLRL FME+WDVG QML+NLYTEI+YTPIATPDGTI+KK+KGNNSGQPSTVVDNTIMVI
Sbjct: 2570 LNLRLHFMEEWDVGAQMLQNLYTEIIYTPIATPDGTIIKKFKGNNSGQPSTVVDNTIMVI 2629

Query: 1580 LAMHYASGLYNSDVAITEYCVFFVNGDDLIIAVHPDHQAFLDGLKESFTHLGLKYDFSNR 1401
            LA+HY+         + E+C +FVNGDDL++AV P+ +  LD    +F  LGL YDFS+R
Sbjct: 2630 LAIHYSYKYLKITKPLDEFCKYFVNGDDLLLAVAPEFEYLLDHFANTFQQLGLNYDFSSR 2689

Query: 1400 CQSREDLWFMSHKAILSGDIYIPKLEEERIVSILEWDRAILPEHRLEAICASMIEAWGYP 1221
             ++RE+LWFMSH+ I++  +YIPKLE ERIVSILEWDRA+ P HRLEAICASMIEAWGYP
Sbjct: 2690 TKNREELWFMSHRGIMTDGLYIPKLEPERIVSILEWDRAVEPVHRLEAICASMIEAWGYP 2749

Query: 1220 DLLYQIRRFYYWVLEQAPYNHLSQTGKAPYISEAALKNLYTNQ-SSPSELQRYVDSLEW- 1047
             LL++IR+FYYWVLEQAPY+ L+Q GKAPY+SEAAL+ LYT + +S  EL+RY+ ++   
Sbjct: 2750 QLLHEIRKFYYWVLEQAPYSELAQLGKAPYLSEAALRALYTGEATSQDELERYLAAVNLE 2809

Query: 1046 NNLTGEEAVEFQGTEDESLNAGDQTKKTSEAKGKDN----KEKALETRPKDKDVDVGTSG 879
                G E V FQ  E  +  A   T+ +   + + +     +++ E R +D+DVD GT G
Sbjct: 2810 GGCGGAEIVAFQANETLNAGASSSTQASRSTRPEASIDVAPQQSSEARVRDRDVDAGTVG 2869

Query: 878  IYQVPKLKAIGTKFCLPKVKGRTIVNLDHLISYEPEQINLSNARATQSQFAQWYNGVKDA 699
             YQ+P+LKA+ TK  +PKVKGR IVN  HL++Y P+Q ++SN R+TQ QF  WYN VKD 
Sbjct: 2870 TYQIPRLKALATKINVPKVKGRMIVNTGHLVNYNPDQTDISNTRSTQKQFEAWYNAVKDE 2929

Query: 698  YELDDNSMGIVMSGLMVWCIENGTSPNINGQWTMMDGDEQVEYPLKPVVENAQPSLRQIM 519
            Y L+D SM + M+GLMVWCIENGTSPN+NG W MMDGD+QVE+PL+P++E+A+P+LRQIM
Sbjct: 2930 YGLNDESMALAMNGLMVWCIENGTSPNVNGVWLMMDGDQQVEFPLRPILEHAKPTLRQIM 2989

Query: 518  AHFSALAEAYIEKRNATKPYMPRYGLLRNLRDSSLARYAFDFYEVTSRTPPRAREAHLQM 339
            AHFS LAEAYIEK+N  KPYMPRYGL RNL D +LAR+AFDFYEVTSRTP RA+EAH QM
Sbjct: 2990 AHFSNLAEAYIEKQNLEKPYMPRYGLQRNLTDFNLARFAFDFYEVTSRTPARAKEAHFQM 3049

Query: 338  KAAAIRNSSTKMFGLDGNAGDKEEDTERHTANDVSKNMHSLMGVRM 201
            K AA+R   +K+FGLDG    ++EDTERHTA+DV+KNMHSL+G+ M
Sbjct: 3050 KTAALRGKQSKLFGLDGKVNTQDEDTERHTADDVNKNMHSLLGISM 3095


>gb|AEN25480.2| polyprotein [Lily mottle virus]
          Length = 3096

 Score = 3252 bits (8432), Expect = 0.0
 Identities = 1608/2943 (54%), Positives = 2152/2943 (73%), Gaps = 22/2943 (0%)
 Frame = -1

Query: 8963 KSKTLSARVHYDWLNLVRAVANIQKRTGVVIELISNRRKVTANRLLKDNKRYVRVVTKHE 8784
            +S TL+A       +L+RA+  I  R    IE++ +++KV+A  + +D   Y++V   H 
Sbjct: 164  RSPTLNAE---GLASLMRAMGKIGARNSTKIEIV-DKKKVSARFVTRDAGSYLQVRVAHH 219

Query: 8783 LGYRHKCDVRTGQWDRIVLKQLVEKSSGRLKHRADEFTPGSSGIALLSDKIDGQVSTSRG 8604
             G R K D++   +    L+ L  K+ G   H A +   G SG+ L + ++ G  S S  
Sbjct: 220  DGLRRKRDLKLSAFADQCLQHLSSKTHGSTYHHATQLKAGDSGLVLSARRLFGWHSGSCS 279

Query: 8603 GVFIIRGRDGSKLYDSQCVVTTHVAARMHHYS-VSERFWKGYDRGFQMARGPT-DHTCDS 8430
             +FI+RG    KLY+++  VT  +A +M HYS   ++FW G++  F   +  +  HTC S
Sbjct: 280  QIFIVRGNHEGKLYEARRKVTLMMAHKMIHYSGPGDKFWAGFNSQFLRIKPKSLQHTCTS 339

Query: 8429 NLDVEECGLVAAIATQALFPCGKITCQQCVDKFTSSGKSELREEHSARLEELIGRIQKNH 8250
            N  V ECG V+A+  QAL+PCG+ITCQQC  ++    K EL E  S  L     +I+++H
Sbjct: 340  NFSVFECGQVSALMCQALYPCGRITCQQCASEYLELTKVELGERLSEGLYRTSAQIREDH 399

Query: 8249 PKFKHVIQXXXXXXXXXXXXXXNVDQFSEVNRMIGERQETPFKQLADLNNLMIKIGSCTS 8070
             +F HV                N++ F+EV+++IGE+ ++PF  +  LN+++IK    +S
Sbjct: 400  QEFAHVAHILTVIADLLSLKNNNMEAFTEVHKLIGEQTQSPFTHINRLNSILIKGSDMSS 459

Query: 8069 EEVALGTAKILEIVRFQRNRTDNIAKGSLAHFRNKVSSKVHVNLDLMCDNQLDDDGNFRW 7890
             E+   +  + E+ RFQ+NRTDNI +  ++ FRNK SSK + NLDLMCDNQLD +GNF W
Sbjct: 460  NELHECSDCVRELARFQKNRTDNIKRLDISVFRNKASSKSYFNLDLMCDNQLDKNGNFEW 519

Query: 7889 RQRAYHAKRLFSNFFDVIDPANGYDQFIKRKNPNGMRKTAIGNLIVSTNMQTFRQQMRGE 7710
             QR YHAKR  SN+F+V++  N Y +   RK+P G R+ AIG  IVSTN + FR+ M G+
Sbjct: 520  GQRGYHAKRFLSNYFEVVNTQNAYREHTLRKHPRGTRELAIGKFIVSTNFEVFRKSMEGK 579

Query: 7709 PMESVPLSNACTSRLKGGFVYPCCCVTTDEGTPIESDMMIPTKDHLVIGNTGDSKFVNMP 7530
             +  +P++ AC S+    F+Y CCC+T ++GTP+ES   +PTK+ LV+GNTGD KFV+MP
Sbjct: 580  RIPHMPVTEACLSQRGERFIYQCCCITHEDGTPLESTFKMPTKNTLVLGNTGDEKFVDMP 639

Query: 7529 RMV-EGMYIAKQGYCYVNIFLAMLINVSDAQSKDYTKKVRDIVIPKLGEWPTLLDVATMC 7353
                E MYIA++GYCY+NIF AMLINV ++Q+K +TK VRD ++P+LG WPT++DVAT C
Sbjct: 640  TDADEKMYIAREGYCYINIFFAMLINVRESQAKAFTKMVRDRLVPELGTWPTMIDVATAC 699

Query: 7352 HFLTVFYPDVKSAELPRILVDHRNQIMHVIDSFGSLTTGYHILKANTVGQLVKFSNDELQ 7173
            H LTVF+PD  SAELPRILVDH  + MHVIDS+GS++TGYH LKANTV QLV F++D L+
Sbjct: 700  HTLTVFFPDTLSAELPRILVDHNTKTMHVIDSYGSVSTGYHQLKANTVSQLVLFASDTLK 759

Query: 7172 SEMMHYRVGGTMMSEESSEDAAVTLLARGVYRPTELKRVLEKDPLLLVYGLLSPRVLIAM 6993
            SEM HY+VGG   + E     AV LL + +YRP  ++ +LE +P L+   + SP VLIA+
Sbjct: 760  SEMKHYQVGGQKFTVEYE---AVKLLIKAIYRPKLMRTLLEDEPYLICLAMCSPGVLIAL 816

Query: 6992 HKSKTLEMALDQWLHKDTSVANLCQMIDVLAKKVSVSKLFRTQQQIISENAMEIARCVDR 6813
              S +LE+A++ W+ +    A +  ++ VLA KVSV++    Q  ++S++A ++ + +DR
Sbjct: 817  FNSGSLELAINYWIARHKDTAQIFALLTVLATKVSVARTLTEQLALLSDHATDVLKIMDR 876

Query: 6812 CRTTSPSRTFVQLVLTRLVESRNTSKELLSAGFQTLMYEGEEMREKKFSEVLAHSWRDLN 6633
               T  S + V   L +L E R+T   L+ +GF  L     E+ EK +   L  SW  L+
Sbjct: 877  TFATQHSVSLVHTFLMQLEEKRHTDVSLVGSGFANLCASTHELMEKNYLAELDASWHALS 936

Query: 6632 WSQRCSAIWHSRKASQHATNSSIEPEQTDSGETWTERFICLRGKLTSHVKVWTTSALSNG 6453
              ++CS    S +  +  ++       TD    +      L  +   ++K    +   N 
Sbjct: 937  LWEKCSQTRWSFQPPKQFSHDLHPSASTDLNGRYNTSVQALFTRNLRNLKKRVCTKYHNM 996

Query: 6452 KRKAYETCGKVVCKLITSTKFFCPDIIKMVNVLSVFCLLLQISTVVNRHLLQYRILKEEQ 6273
            K K ++  G+ VC  IT +  F PD+ + V++L++F ++L I   +N +  +Y  LK  +
Sbjct: 997  KIKTHQFIGRQVCNSITGSSRFFPDLARWVHILAIFGVMLNIVRTINLYTSEYIRLKNNE 1056

Query: 6272 QNMRDDKDFETMMGIYNLYVKTYEGEYPTLKQFSTYLQKVNPQIYAYYERTMGEPDDTDE 6093
             +  +++ +  ++  +++  KT EG+ PTL +F+ +L++ +P++YA +   + +  +  E
Sbjct: 1057 LSQIEERRWNKLLHTFDMLEKT-EGQKPTLIEFTKHLKQWDPELYAEFHSILQDDVEDSE 1115

Query: 6092 CVELQAKGKGEIELERTIAFVALIMMMFDAERSDCVYKVLNKLRGIMNPISAETVAFQGL 5913
             V+ QAK  GE  LER +A +AL MM+FDA+RSDCVYKVLNKL+G++N +  E V FQ +
Sbjct: 1116 EVQFQAKPDGERNLERIMAIIALTMMVFDADRSDCVYKVLNKLKGLLNTVHQEPVKFQSI 1175

Query: 5912 DDMKELLGETKMAIDIELDTENHQLNRLGGVTFGDWWTHQLNQNRTVPHYRTEGKFVEFT 5733
            DD++++L E +M ID E+  ++H +N+L G TF  WW++Q+  N  +PHYRTEG F+EFT
Sbjct: 1176 DDIQDILEEREMVIDFEISADDHNINKLAGATFEQWWSNQMECNNVLPHYRTEGFFMEFT 1235

Query: 5732 RANAMIVANEIAHSDQTDFLVMGAVGSGKSTGLPFHLSRKGKVLMIEPTKPLAENVHKQL 5553
            RANA  VANEIAH    D LV GAVGSGKSTGLPF+LS++G+VLM+EPT+PLA NVHKQL
Sbjct: 1236 RANAAHVANEIAHGPHKDLLVRGAVGSGKSTGLPFYLSKRGRVLMLEPTRPLASNVHKQL 1295

Query: 5552 KGNPFMSNATLRMRGCSVFGSSPITVMTSGYALHYFAHNIAQLAEYQFVIIDECHVHDAS 5373
             G+PF+ +ATL+MRG + FGS+PITVMTSGYA HY+A+N  QL +++FVI DECHV+D+S
Sbjct: 1296 AGDPFLVSATLKMRGETTFGSAPITVMTSGYAFHYYANNPNQLRDFEFVIFDECHVNDSS 1355

Query: 5372 AMAFRCLLLEYDYQGKVLKVSATPPGREATFNTQHPVLVKMEESLSFQQFVALQGSGANG 5193
            AMAFR LL EY+Y G+++KVSATPPGRE  F TQHPV +   E L+FQQFVA+QG+GA G
Sbjct: 1356 AMAFRSLLAEYNYDGRIIKVSATPPGREVEFATQHPVEIIPIERLTFQQFVAVQGTGAVG 1415

Query: 5192 DITQNGDNILIYVASYNEVDTLSKMLLDKNHKVTKVDGRTMKMGQVEIPTAGTKEKKHFI 5013
            D+T  GDNIL+YVASY+EVD LSK L++K HKVTKVDGRTMK+G VEI T+G++ KKHF+
Sbjct: 1416 DVTTKGDNILVYVASYSEVDNLSKGLVEKGHKVTKVDGRTMKVGGVEIITSGSQAKKHFV 1475

Query: 5012 VATNIIENGVTLDIDVVVDFGMKVVPELDIDNRLIRYSKVAISYGERIQRLGRVGRNKEG 4833
            VATNIIENGVTLDIDVVVDFG+KV  E+DID+RL RY K +ISYGERIQRLGRVGRNK G
Sbjct: 1476 VATNIIENGVTLDIDVVVDFGLKVSAEVDIDSRLTRYVKKSISYGERIQRLGRVGRNKSG 1535

Query: 4832 VALRIGVTEKGLSAVPNVTATEAAFYCFAYGLPVMTSGVAVSMLSNCTVNQARTMMHFEL 4653
            VA+RIG TEKGL A+P  TATEAAF CFAYGLPVMT+ V+ ++L+NCTV QARTMM FE+
Sbjct: 1536 VAVRIGATEKGLQAIPVTTATEAAFLCFAYGLPVMTNNVSTNILTNCTVLQARTMMLFEI 1595

Query: 4652 PLFYMVHMVRFDGSMHPELHKCLKDYKLRDSEIILNKMAIPSSGVKSWMTAGEYSRLGAR 4473
              FYM H VRFDG+MHPE+HK L  YKLRDSEIILNK+AIP+ G+  W TA EY+  G +
Sbjct: 1596 NPFYMCHFVRFDGTMHPEVHKILTPYKLRDSEIILNKVAIPNKGLMQWPTAKEYAYQGFK 1655

Query: 4472 NSIEEFVRIPFYARDIPDKVHERVWEVVVTFKRDAGFGKIQSASACKVAYTLQTDAASIP 4293
             +I + VR+PF+A DIP+++HER+W+++   K DAGFG+I +ASACK+AYTL+TD ASI 
Sbjct: 1656 MNIPDTVRLPFHALDIPERLHERMWQIIEAHKGDAGFGRITTASACKIAYTLRTDVASIQ 1715

Query: 4292 RTICIIEELIKNEVKKQEYFQVASGVDCGSG-FSLINITNALRSRHMSNHTAENIAILEA 4116
            RT+ I+++LI+NE+KKQEYF+  +   C S  FSL  ITNA+R+RH+ +HT EN+++L+A
Sbjct: 1716 RTVHILDKLIENELKKQEYFRNITSASCSSSNFSLTTITNAIRARHIKDHTVENVSVLQA 1775

Query: 4115 AKNQIYEFRNLGIDPSS-KTVCDFGALECVQFQSAEGVSKQLKLKGHWNKSLITKDLLVA 3939
            AK QI EF+N+  D      + ++GALECVQFQ+ E +++ L+LKGHWNKSL+T D+++ 
Sbjct: 1776 AKAQILEFKNVTFDLDHVNRMTEYGALECVQFQTLESMAQHLQLKGHWNKSLLTHDVVIC 1835

Query: 3938 GFTLFGGLWMLYNHFKRAATTLVE-------FQASGKRQSQKRRFQIARNHKHAYEVNPD 3780
            G  LFG +WM+ ++FK   + +V+       FQA  KRQ Q+ RF+ AR++KHAYEV+ D
Sbjct: 1836 GAVLFGCVWMVGSYFKERCSGVVKRYNESVKFQAKNKRQRQRLRFREARDNKHAYEVHGD 1895

Query: 3779 QTDVEHYFGEAYAKKPQQKGRTKGMGAKSRRFYNIYGFDPAEYTFARYVDPLTGYTLDEN 3600
              D++ YFG AY KK +  G T+GMG K+R+F N+Y FDP EY+FARYVDPLTGYTLDE 
Sbjct: 1896 DADIQTYFGAAYTKKGKSTGVTRGMGIKTRKFVNMYNFDPTEYSFARYVDPLTGYTLDEQ 1955

Query: 3599 ALTDARLVQEHFGKIRLELREQDKLDAQALMANQKIEAYFVKDLAKQILKIDMTPHRPLE 3420
            ++TD  LVQ+HFG+IR  L E  +++ +A+ +N ++E YFVK+LA +ILKIDMTPH PL 
Sbjct: 1956 SITDITLVQDHFGRIRRRLMEDGEIEKEAIASNARLEVYFVKNLASKILKIDMTPHNPLR 2015

Query: 3419 LGCKTSTIAGYPEREGELRQAAPHVIVDASVLPKQNEYTS-EGAEFESKATYQGLRDYNS 3243
            +     T+AG+PER+ ELRQA   V+V A+ LPK+N Y   E  EFE+++T+ GLRDYN 
Sbjct: 2016 VCGIKETVAGFPERDMELRQAGQPVMVTAAELPKENPYPEGEIVEFENRSTFHGLRDYNP 2075

Query: 3242 ISSSICLLENDSDGYTMKIHGIGFGSMIITNQHLFKRNNGSLKIQSHRGEFLVPNTTQLK 3063
            I++ +C LE++SDG+T  ++GIG+GS IITNQHLF RNNG++ I+SH G + + N+TQL+
Sbjct: 2076 IATCVCRLEHNSDGHTSSLYGIGYGSYIITNQHLFIRNNGTINIESHHGTYHIRNSTQLQ 2135

Query: 3062 MYPFEGRDLLLIQMPKDFPPFPQKLKFRLPVSGERVCLIGSNFQEKYISSTVSESSVIAQ 2883
            +YP EGRD+++IQ+PKDFPPF ++LKFR PV+ ++VCL+G+NFQEK  +STVSE+S+I +
Sbjct: 2136 LYPVEGRDIVIIQLPKDFPPFARRLKFRHPVTTDKVCLVGTNFQEKTTTSTVSEASLITR 2195

Query: 2882 KDNTSFFRHWITTQKGHCGLPLVSVKDGHILGIHSMTSLEDSSSFFISLPPDIGPKYLQN 2703
            KD++ FFRHWI+T+ G CGLP VS KDG +LG+HS+TSL + S+FFI+ P D    YL+ 
Sbjct: 2196 KDDSHFFRHWISTKDGQCGLPAVSTKDGCVLGLHSLTSLVNDSNFFIAFPDDFEKNYLER 2255

Query: 2702 EENIEWTKKWRLNLELINWGAFKLSNEKPDNLFKLSKDIFELLDEPVDFQAKEGGWLYDR 2523
               + W K W+LN++ I WGA  L  +KP N+FKLSKDI  L  EPV  Q++E  WL+DR
Sbjct: 2256 ANELNWVKHWKLNVDKICWGALSLERDKPSNMFKLSKDIQRLDTEPVGLQSREDKWLFDR 2315

Query: 2522 LGGNITAMARTSNQLVTKHVVKGQCLLFQTYLETHPEASNFFKPLMGFYQKSRLNKEAYI 2343
            L GN+ AMA+T NQLVTKHVVKG+CLLF+TYL  +PEA  +F P+MG YQKSRLNKEAYI
Sbjct: 2316 LNGNLKAMAQTRNQLVTKHVVKGKCLLFETYLNVNPEAKEYFTPMMGAYQKSRLNKEAYI 2375

Query: 2342 KDLFKYNAPTTVGVLNPHVFELAEESVYNMFVGIGFQKCVYVTDQEAIFSALNMKAATGA 2163
            KDLFKY++P  VG ++   FE A  SV ++F   GF KC YVTD++ IFSALN+ AA GA
Sbjct: 2376 KDLFKYSSPIVVGDVDCAAFEAACASVTHLFEEAGFGKCNYVTDEQEIFSALNLNAAVGA 2435

Query: 2162 LYQGKKKEYFENFTEADKAQILKDSCFRLYTGKLGVWNGSLKAELRPLEKVQANKTRSFT 1983
            +Y GKK++YF+++T++DK  IL+DSC RLY GK+GVWNGSLKAELR  EKV  NKTR+FT
Sbjct: 2436 MYSGKKRDYFKDYTDSDKEAILRDSCLRLYQGKMGVWNGSLKAELRAKEKVDLNKTRTFT 2495

Query: 1982 AAPIDTLLGGKVCVDDFNNQFYSLNLKAPWSVGMTKFYGGWNTLIRSLPEGWIYCDADGS 1803
            AAP+DTLLGGKVCVDDFNN+FYSLN+  PWSVGMTKFY GW+ ++R LPEGW+YCDADGS
Sbjct: 2496 AAPVDTLLGGKVCVDDFNNRFYSLNIACPWSVGMTKFYRGWDEMLRKLPEGWVYCDADGS 2555

Query: 1802 QFDSSLTPYLINAVLNLRLRFMEDWDVGTQMLENLYTEIVYTPIATPDGTIVKKYKGNNS 1623
            QFDSSL+PYLINAVLNLRL FME+WDVGTQML+NLYTEI+YTPIATPDGTI+KK+KGNNS
Sbjct: 2556 QFDSSLSPYLINAVLNLRLHFMEEWDVGTQMLQNLYTEIIYTPIATPDGTIIKKFKGNNS 2615

Query: 1622 GQPSTVVDNTIMVILAMHYASGLYNSDVAITEYCVFFVNGDDLIIAVHPDHQAFLDGLKE 1443
            GQPSTVVDNTIMVILA+HY+         + E+C +FVNGDDL++AV P+ +  LD L  
Sbjct: 2616 GQPSTVVDNTIMVILAIHYSYKNLKITKPLDEFCKYFVNGDDLLLAVAPEFEYVLDHLAN 2675

Query: 1442 SFTHLGLKYDFSNRCQSREDLWFMSHKAILSGDIYIPKLEEERIVSILEWDRAILPEHRL 1263
            +F  LGL YDFS+R ++RE+LWFMSH+ I++  +YIPKLE ERIVSILEWDRA+ P HRL
Sbjct: 2676 TFQQLGLNYDFSSRTKNREELWFMSHRGIMTDGLYIPKLEPERIVSILEWDRAVEPVHRL 2735

Query: 1262 EAICASMIEAWGYPDLLYQIRRFYYWVLEQAPYNHLSQTGKAPYISEAALKNLYT-NQSS 1086
            EAICASMIEAWGYP LL++IR+FYYWVLEQAPY+ L+Q GKAPY+SE AL+ LYT  ++S
Sbjct: 2736 EAICASMIEAWGYPQLLHEIRKFYYWVLEQAPYSELAQLGKAPYLSEVALRALYTGGEAS 2795

Query: 1085 PSELQRYVDSLEWN-NLTGEEAVEFQGTEDESLNAG----DQTKKTS--EAKGKD-NKEK 930
              EL+RY+ +L+ N      E V FQ   +E+LNAG     QT +++  EA   D   ++
Sbjct: 2796 QDELERYLAALDLNVEQCNTEIVAFQA--NETLNAGASSSTQTSRSTRPEAAAIDVAPQQ 2853

Query: 929  ALETRPKDKDVDVGTSGIYQVPKLKAIGTKFCLPKVKGRTIVNLDHLISYEPEQINLSNA 750
            + E R +D+DVD GT G YQ+P+LKA+ TK  +PKVKGR IVN  HL++Y P+Q ++SN 
Sbjct: 2854 SSEARVRDRDVDAGTVGTYQIPRLKALATKINVPKVKGRIIVNTGHLVNYNPDQADISNT 2913

Query: 749  RATQSQFAQWYNGVKDAYELDDNSMGIVMSGLMVWCIENGTSPNINGQWTMMDGDEQVEY 570
            R+TQ QF  WY+ VK  Y L+D SM + M+GLMVWCIENGTSPNING W MMDGD+QVE+
Sbjct: 2914 RSTQKQFETWYDAVKGEYGLNDESMALAMNGLMVWCIENGTSPNINGVWLMMDGDQQVEF 2973

Query: 569  PLKPVVENAQPSLRQIMAHFSALAEAYIEKRNATKPYMPRYGLLRNLRDSSLARYAFDFY 390
            PL+P++E+A+P+LRQIMAHFS LAEAYIEK+N  KPYMPRYGL RNL D +LAR+AFDFY
Sbjct: 2974 PLRPILEHAKPTLRQIMAHFSNLAEAYIEKQNLEKPYMPRYGLQRNLTDFNLARFAFDFY 3033

Query: 389  EVTSRTPPRAREAHLQMKAAAIRNSSTKMFGLDGNAGDKEEDTERHTANDVSKNMHSLMG 210
            EVTSRTP RA+EAH QMK AA+R   +K+FGLDG    ++EDTERHTA+DV+KNMHSL+G
Sbjct: 3034 EVTSRTPARAKEAHFQMKTAALRGKQSKLFGLDGKVNTQDEDTERHTADDVNKNMHSLLG 3093

Query: 209  VRM 201
            V M
Sbjct: 3094 VSM 3096


>gb|ADC95428.1| polyprotein [Lily mottle virus]
          Length = 3095

 Score = 3247 bits (8419), Expect = 0.0
 Identities = 1602/2933 (54%), Positives = 2139/2933 (72%), Gaps = 26/2933 (0%)
 Frame = -1

Query: 8921 NLVRAVANIQKRTGVVIELISNRRKVTANRLLKDNKRYVRVVTKHELGYRHKCDVRTGQW 8742
            +L+RA+A I  +  + IE++ + RKV A  + +D   Y++V   H  G R + D++   +
Sbjct: 175  SLMRAIAKIGAKNSIKIEIV-DERKVQARYIKRDAGSYLQVRVAHHEGLRRRRDLKLSAF 233

Query: 8741 DRIVLKQLVEKSSGRLKHRADEFTPGSSGIALLSDKIDGQVSTSRGGVFIIRGRDGSKLY 8562
                L QL   + G   H   +   G SGI LL+ ++ G  S S   +F++RG    KLY
Sbjct: 234  ADQCLTQLASTTHGTKYHHVTQLKAGDSGIVLLARRLFGWHSGSCSQIFVVRGNHEGKLY 293

Query: 8561 DSQCVVTTHVAARMHHYS-VSERFWKGYDRGF-QMARGPTDHTCDSNLDVEECGLVAAIA 8388
            +++  VT  +  +M HYS   ++FW G++  F ++      HTC SN +V ECG VAA+ 
Sbjct: 294  EARRKVTLTMTHKMIHYSGPGDKFWAGFNSQFLRIKPKEIPHTCTSNFNVFECGQVAALM 353

Query: 8387 TQALFPCGKITCQQCVDKFTSSGKSELREEHSARLEELIGRIQKNHPKFKHVIQXXXXXX 8208
             QAL+PCG+ITCQQC  ++    K EL E+ S  L     +I++NH +F HV        
Sbjct: 354  CQALYPCGRITCQQCASEYLELTKVELGEKLSDGLYRTSSQIRENHREFAHVAHILNVIA 413

Query: 8207 XXXXXXXXNVDQFSEVNRMIGERQETPFKQLADLNNLMIKIGSCTSEEVALGTAKILEIV 8028
                    N++ F+EV+++IGE+ ++PF  L  LN+++IK    +S E+   +  I E+ 
Sbjct: 414  DLLSLKNNNMEAFTEVHKLIGEQTQSPFTHLNRLNSILIKGSDMSSNELYECSDCIRELA 473

Query: 8027 RFQRNRTDNIAKGSLAHFRNKVSSKVHVNLDLMCDNQLDDDGNFRWRQRAYHAKRLFSNF 7848
            RFQ+NRTDNI K  ++ FRNK SSK + NLDLMCDNQLD +GNF W QR YHAKR  SN+
Sbjct: 474  RFQKNRTDNIKKLDVSVFRNKASSKSYFNLDLMCDNQLDKNGNFEWGQRGYHAKRFLSNY 533

Query: 7847 FDVIDPANGYDQFIKRKNPNGMRKTAIGNLIVSTNMQTFRQQMRGEPMESVPLSNACTSR 7668
            F+V++  N Y +   RK+PNG R+ AIG  IVSTN + FR+ M G+ +  +P++ AC S+
Sbjct: 534  FEVVNTQNAYREHTLRKHPNGTRELAIGKFIVSTNFEVFRKSMEGKRIPQMPVTEACLSQ 593

Query: 7667 LKGGFVYPCCCVTTDEGTPIESDMMIPTKDHLVIGNTGDSKFVNMPRMV-EGMYIAKQGY 7491
                F+Y CCCVT ++GTP+ES   +PTK+ LV+GNTGD KFV+MP    E MYIA++GY
Sbjct: 594  RGERFIYQCCCVTNEDGTPLESTFKMPTKNTLVLGNTGDEKFVDMPTDTDEKMYIAREGY 653

Query: 7490 CYVNIFLAMLINVSDAQSKDYTKKVRDIVIPKLGEWPTLLDVATMCHFLTVFYPDVKSAE 7311
            CY+NIF AMLINV ++Q+K +TK VRD ++P+LG WPT++DVAT CH LTVF+PD  SAE
Sbjct: 654  CYINIFFAMLINVRESQAKAFTKMVRDRLVPELGTWPTMIDVATACHTLTVFFPDTLSAE 713

Query: 7310 LPRILVDHRNQIMHVIDSFGSLTTGYHILKANTVGQLVKFSNDELQSEMMHYRVGGTMMS 7131
            LPRILVDH  + MHVIDS+GS++TGYH LKANTV QLV F++D L+SEM HY+VGG   +
Sbjct: 714  LPRILVDHNTKTMHVIDSYGSVSTGYHQLKANTVSQLVLFASDTLKSEMKHYQVGGKKFT 773

Query: 7130 EESSEDAAVTLLARGVYRPTELKRVLEKDPLLLVYGLLSPRVLIAMHKSKTLEMALDQWL 6951
             E     AV LL + +YRP  ++ ++E +P L+   + SP VLIA+  S +LE A++ W+
Sbjct: 774  VEYE---AVKLLIKAIYRPKLMRTLMEDEPYLICLAMCSPGVLIALFNSGSLETAINYWI 830

Query: 6950 HKDTSVANLCQMIDVLAKKVSVSKLFRTQQQIISENAMEIARCVDRCRTTSPSRTFVQLV 6771
             +    A +  ++ VLA KVSV++    Q  I+S++A ++ + +DR   T  S + V   
Sbjct: 831  ARHKDTAQIFALLTVLATKVSVARTLTEQLAILSDHATDVLKIMDRTFATQHSVSLVHTF 890

Query: 6770 LTRLVESRNTSKELLSAGFQTLMYEGEEMREKKFSEVLAHSWRDLNWSQRCSAIWHSRKA 6591
            L +L E R+T   L+ +GF  L     E+ EK +   L  SWRDL+  ++CS +  S ++
Sbjct: 891  LMQLEEKRHTDVSLVGSGFANLSATTHELMEKNYLAELDASWRDLSLLEKCSQMRWSFRS 950

Query: 6590 SQHATNSSIEPEQTDSGETWTERFICLRGKLTSHVKVWTTSALSNGKRKAYETCGKVVCK 6411
             Q  +N       TD    +      L  +  ++++    +   N K + ++  G+ VC 
Sbjct: 951  PQQFSNELHPSASTDLNGRYNTSVRALSTRYMNNLRKSVCTKYHNMKIRTHQFIGRQVCN 1010

Query: 6410 LITSTKFFCPDIIKMVNVLSVFCLLLQISTVVNRHLLQYRILKEEQQNMRDDKDFETMMG 6231
             I  +  F PD+ + V++L++F ++L I   +N +  +   LK    +  ++K +  ++ 
Sbjct: 1011 SIMGSSRFFPDLAQCVHILAIFSIVLNIIRTINIYTSECIRLKNCGLSQIEEKRWNKLLH 1070

Query: 6230 IYNLYVKTYEGEYPTLKQFSTYLQKVNPQIYAYYERTMGEPDDTDECVELQAKGKGEIEL 6051
             +++  K  +G+ PTL +F+ +L++ +P++Y+ +   + + ++  E  + QAK  GE  L
Sbjct: 1071 TFDMMEKI-DGQKPTLIEFTKHLKQWDPELYSEFHSILQDEEEDTEEAQFQAKPDGERNL 1129

Query: 6050 ERTIAFVALIMMMFDAERSDCVYKVLNKLRGIMNPISAETVAFQGLDDMKELLGETKMAI 5871
            ER +A +AL MM+FDA+RSDCVYKVLNKL+G++N +  E V FQ +DD+++ L E +M I
Sbjct: 1130 ERIMAIIALTMMVFDADRSDCVYKVLNKLKGLLNTVHQEPVKFQSIDDIQDYLEEREMVI 1189

Query: 5870 DIELDTENHQLNRLGGVTFGDWWTHQLNQNRTVPHYRTEGKFVEFTRANAMIVANEIAHS 5691
            D E+  ++H +N+L G TF  WW++Q+  N  +PHYRTEG F+EFTRANA  VANEIAH 
Sbjct: 1190 DFEISADDHNINKLAGATFEQWWSNQMECNNVLPHYRTEGFFMEFTRANAAHVANEIAHG 1249

Query: 5690 DQTDFLVMGAVGSGKSTGLPFHLSRKGKVLMIEPTKPLAENVHKQLKGNPFMSNATLRMR 5511
               D L+ GAVGSGKSTGLPF+LS++G+VLM+EPT+PLA NVHKQL G+PF+ +ATL+MR
Sbjct: 1250 PHKDLLIRGAVGSGKSTGLPFYLSKRGRVLMLEPTRPLASNVHKQLAGDPFLVSATLKMR 1309

Query: 5510 GCSVFGSSPITVMTSGYALHYFAHNIAQLAEYQFVIIDECHVHDASAMAFRCLLLEYDYQ 5331
            G + FGS+PITVMTSGYA HY+A+N  QL +++F+I DECHV+ +SAMAFR LL EY Y 
Sbjct: 1310 GEATFGSAPITVMTSGYAFHYYANNPNQLRDFEFIIFDECHVNGSSAMAFRSLLAEYTYD 1369

Query: 5330 GKVLKVSATPPGREATFNTQHPVLVKMEESLSFQQFVALQGSGANGDITQNGDNILIYVA 5151
            G+++KVSATPPGRE  F TQHPV +   E L+FQQFVA+QG+GA GD+T  GDNIL+YVA
Sbjct: 1370 GRIIKVSATPPGREVEFTTQHPVEIVPIERLTFQQFVAVQGTGAVGDVTTKGDNILVYVA 1429

Query: 5150 SYNEVDTLSKMLLDKNHKVTKVDGRTMKMGQVEIPTAGTKEKKHFIVATNIIENGVTLDI 4971
            SY+EVD LSK L++K HKVTKVDGRTMK+G VEI T+G++ KKHF+VATNIIENGVTLDI
Sbjct: 1430 SYSEVDNLSKGLVEKGHKVTKVDGRTMKVGGVEIITSGSQAKKHFVVATNIIENGVTLDI 1489

Query: 4970 DVVVDFGMKVVPELDIDNRLIRYSKVAISYGERIQRLGRVGRNKEGVALRIGVTEKGLSA 4791
            DVVVDFG+KVV E+DID+RL RY K +ISYGERIQRLGRVGRNK GVA+R+G TEKGL A
Sbjct: 1490 DVVVDFGLKVVAEVDIDSRLTRYVKKSISYGERIQRLGRVGRNKPGVAVRVGTTEKGLQA 1549

Query: 4790 VPNVTATEAAFYCFAYGLPVMTSGVAVSMLSNCTVNQARTMMHFELPLFYMVHMVRFDGS 4611
            +P  TATEAAF CFAYGLPVMT+ V+ ++L+NCTV QARTMM FE+  FYM H VRFDG+
Sbjct: 1550 IPVTTATEAAFLCFAYGLPVMTNNVSTNILTNCTVLQARTMMLFEINPFYMCHFVRFDGT 1609

Query: 4610 MHPELHKCLKDYKLRDSEIILNKMAIPSSGVKSWMTAGEYSRLGARNSIEEFVRIPFYAR 4431
            MHPE+H+ L  YKLRDSEIILNK+AIP+ G+  W TA EY+  G + +I + VR+PF++ 
Sbjct: 1610 MHPEVHRILTPYKLRDSEIILNKVAIPNKGLMQWPTAKEYAYQGFKMNIPDTVRLPFHSL 1669

Query: 4430 DIPDKVHERVWEVVVTFKRDAGFGKIQSASACKVAYTLQTDAASIPRTICIIEELIKNEV 4251
            DIP+++HER+W++V T K DAGFG+I +ASACK+AYTL+TDAASI RTI I+++LI+NE+
Sbjct: 1670 DIPERLHERMWQIVETHKGDAGFGRITTASACKIAYTLKTDAASIQRTIHILDKLIENEL 1729

Query: 4250 KKQEYFQVASGVDCGSG-FSLINITNALRSRHMSNHTAENIAILEAAKNQIYEFRNLGID 4074
            K+QEYF+  +   C S  FSL  ITNA+R+RH+ +HT EN+++L+AAK QI EF+N+  D
Sbjct: 1730 KRQEYFRNITSASCSSSSFSLTTITNAIRARHIKDHTVENVSVLQAAKAQILEFKNVTFD 1789

Query: 4073 PSSK-TVCDFGALECVQFQSAEGVSKQLKLKGHWNKSLITKDLLVAGFTLFGGLWMLYNH 3897
                  + ++GALECVQFQ+ E V++ L+LKGHWNKSL+T D+++ G  L G + M+ ++
Sbjct: 1790 LDHVYRMTEYGALECVQFQTLESVTQHLQLKGHWNKSLLTHDVVICGAVLIGCVLMVGSY 1849

Query: 3896 FKRAATTLVE-------FQASGKRQSQKRRFQIARNHKHAYEVNPDQTDVEHYFGEAYAK 3738
            FK   + +V+       FQA  KRQ Q+ RF+ AR++KHAYEV+ D  D++ YFG AY K
Sbjct: 1850 FKERCSGVVKRYNENVKFQAKNKRQRQRLRFREARDNKHAYEVHGDDADIQTYFGSAYTK 1909

Query: 3737 KPQQKGRTKGMGAKSRRFYNIYGFDPAEYTFARYVDPLTGYTLDENALTDARLVQEHFGK 3558
            K + KG T+GMG K+R+F N+Y FDP EY+FARYVDPLTGYT DE  LTD  LVQ+HFG+
Sbjct: 1910 KGKTKGVTRGMGIKTRKFVNMYNFDPTEYSFARYVDPLTGYTPDEQTLTDIALVQDHFGR 1969

Query: 3557 IRLELREQDKLDAQALMANQKIEAYFVKDLAKQILKIDMTPHRPLELGCKTSTIAGYPER 3378
            IR +L E  +L+ ++L  N ++E YFVK+LA QILKIDMTPH PL +  +  T+AG+PER
Sbjct: 1970 IRRKLMEDGELEKESLAQNARLEVYFVKNLASQILKIDMTPHNPLRVCDRIETVAGFPER 2029

Query: 3377 EGELRQAAPHVIVDASVLPKQNEYTS-EGAEFESKATYQGLRDYNSISSSICLLENDSDG 3201
            + ELRQ+   V+V A+ LPK+N +   E  EFE+K+T+ GLRDYN I++ +C LE++SDG
Sbjct: 2030 DMELRQSGKSVMVTAAELPKENPHPGGEIVEFENKSTFHGLRDYNPIATCVCRLEHNSDG 2089

Query: 3200 YTMKIHGIGFGSMIITNQHLFKRNNGSLKIQSHRGEFLVPNTTQLKMYPFEGRDLLLIQM 3021
            +T  ++GIG+GS IITNQHLF RNNG++ I+SH   + + N+TQL++YP EGRD+++IQ+
Sbjct: 2090 HTSSLYGIGYGSYIITNQHLFIRNNGTINIESHHRTYHIRNSTQLQLYPIEGRDIVIIQL 2149

Query: 3020 PKDFPPFPQKLKFRLPVSGERVCLIGSNFQEKYISSTVSESSVIAQKDNTSFFRHWITTQ 2841
            PKDFPPF ++LKFR P + ++VCL+G+NFQEK  +STVSE+S+I +KD++ FFRHWI+T+
Sbjct: 2150 PKDFPPFARRLKFRHPTTTDKVCLVGTNFQEKTTTSTVSEASLITRKDDSHFFRHWISTK 2209

Query: 2840 KGHCGLPLVSVKDGHILGIHSMTSLEDSSSFFISLPPDIGPKYLQNEENIEWTKKWRLNL 2661
             G CGLP VS KDG +LG+HS+TSL + S+FFI+ P +    YL+    + W K W+LN+
Sbjct: 2210 DGQCGLPAVSTKDGCVLGLHSLTSLVNDSNFFIAFPDNFEKNYLERANELNWVKHWKLNV 2269

Query: 2660 ELINWGAFKLSNEKPDNLFKLSKDIFELLDEPVDFQAKEGGWLYDRLGGNITAMARTSNQ 2481
            + I WGA  L  +KP N+FKLSKDI  L  EPV  Q++E  WL+DRL GN+ AMART NQ
Sbjct: 2270 DKICWGALSLEKDKPSNMFKLSKDIHRLDMEPVGLQSREDKWLFDRLNGNLKAMARTRNQ 2329

Query: 2480 LVTKHVVKGQCLLFQTYLETHPEASNFFKPLMGFYQKSRLNKEAYIKDLFKYNAPTTVGV 2301
            LVTKHVVKG+CLLF+TYL   P+A  +F P+MG YQKSRLNKEAYIKDLFKY++P  VG 
Sbjct: 2330 LVTKHVVKGKCLLFETYLNVTPKAKEYFTPMMGAYQKSRLNKEAYIKDLFKYSSPIVVGD 2389

Query: 2300 LNPHVFELAEESVYNMFVGIGFQKCVYVTDQEAIFSALNMKAATGALYQGKKKEYFENFT 2121
            ++   FE A +SV  +F G GF +C YVTD++ IFSALNM AA GA+Y GKK++YF++FT
Sbjct: 2390 VDCAAFEAACDSVTQLFEGAGFGRCNYVTDEQEIFSALNMNAAVGAMYSGKKRDYFKDFT 2449

Query: 2120 EADKAQILKDSCFRLYTGKLGVWNGSLKAELRPLEKVQANKTRSFTAAPIDTLLGGKVCV 1941
            + DK  IL+DSC RLY GK+GVWNGSLKAELR  EKV  NKTR+FTAAP+DTLLGGK CV
Sbjct: 2450 DLDKESILRDSCLRLYQGKMGVWNGSLKAELRAKEKVDLNKTRTFTAAPVDTLLGGKTCV 2509

Query: 1940 DDFNNQFYSLNLKAPWSVGMTKFYGGWNTLIRSLPEGWIYCDADGSQFDSSLTPYLINAV 1761
            DDFNN+FYSLN+  PWSVGMTKFY GW+ ++R LPEGW+YCDADGSQFDSSL+PYLINAV
Sbjct: 2510 DDFNNRFYSLNIACPWSVGMTKFYKGWDEMLRKLPEGWVYCDADGSQFDSSLSPYLINAV 2569

Query: 1760 LNLRLRFMEDWDVGTQMLENLYTEIVYTPIATPDGTIVKKYKGNNSGQPSTVVDNTIMVI 1581
            LNLRL FME+WDVG QML+NLYTEI+YTPIATPDGTI+KK+KGNNSGQPSTVVDNTIMVI
Sbjct: 2570 LNLRLHFMEEWDVGAQMLQNLYTEIIYTPIATPDGTIIKKFKGNNSGQPSTVVDNTIMVI 2629

Query: 1580 LAMHYASGLYNSDVAITEYCVFFVNGDDLIIAVHPDHQAFLDGLKESFTHLGLKYDFSNR 1401
            LA+HY+         + E+C +FVNGDDL++AV P+ +  LD    +F  LGL YDFS+R
Sbjct: 2630 LAIHYSYKYLKITKPLDEFCKYFVNGDDLLLAVAPEFEYLLDHFANTFQQLGLNYDFSSR 2689

Query: 1400 CQSREDLWFMSHKAILSGDIYIPKLEEERIVSILEWDRAILPEHRLEAICASMIEAWGYP 1221
             ++RE+LWFMSH+ I++  +YIPKLE ERIVSILEWDRA+ P HRLEAICASMIEAWGYP
Sbjct: 2690 TKNREELWFMSHRGIMTDGLYIPKLEPERIVSILEWDRAVEPVHRLEAICASMIEAWGYP 2749

Query: 1220 DLLYQIRRFYYWVLEQAPYNHLSQTGKAPYISEAALKNLYTNQ-SSPSELQRYVDSLEWN 1044
             LL++IR+FYYWVLEQAPY+ L+Q GKAPY+SEAAL+ LYT + +S  EL+RY+ +L   
Sbjct: 2750 QLLHEIRKFYYWVLEQAPYSELAQLGKAPYLSEAALRALYTGEATSQDELERYLAAL--- 2806

Query: 1043 NLTGE----EAVEFQGTEDESLNAGDQTKKTSEAKGKDNKEKAL--------ETRPKDKD 900
            NL GE    E V FQ   +E+LNAG     +++A      E A+        E R +D+D
Sbjct: 2807 NLEGECGGAEIVAFQA--NETLNAG--ASSSTQASRSTRPEAAIDMAPQQSSEARVRDRD 2862

Query: 899  VDVGTSGIYQVPKLKAIGTKFCLPKVKGRTIVNLDHLISYEPEQINLSNARATQSQFAQW 720
            VD GT G YQ+P+LKA+ TK  +PKVKGR IVN  HL++Y P+Q ++SN R+TQ QF  W
Sbjct: 2863 VDAGTVGTYQIPRLKALATKINVPKVKGRMIVNTGHLVNYNPDQTDISNTRSTQKQFEAW 2922

Query: 719  YNGVKDAYELDDNSMGIVMSGLMVWCIENGTSPNINGQWTMMDGDEQVEYPLKPVVENAQ 540
            YN VKD Y L+D SM + M+GLMVWCIENGTSPN+NG W MMDGD+QVE+P++P++E+A+
Sbjct: 2923 YNAVKDEYGLNDESMALAMNGLMVWCIENGTSPNVNGVWLMMDGDQQVEFPIRPILEHAK 2982

Query: 539  PSLRQIMAHFSALAEAYIEKRNATKPYMPRYGLLRNLRDSSLARYAFDFYEVTSRTPPRA 360
            P+LRQIMAHFS LAEAYIEK+N  +PYMPRYGL RNL D +LAR+AFDFYEVTSRTP RA
Sbjct: 2983 PTLRQIMAHFSNLAEAYIEKQNLERPYMPRYGLQRNLTDFNLARFAFDFYEVTSRTPARA 3042

Query: 359  REAHLQMKAAAIRNSSTKMFGLDGNAGDKEEDTERHTANDVSKNMHSLMGVRM 201
            +EAH QMK AA+R   +K+FGLDG    ++EDTERHTA+DV+KNMHSL+G+ M
Sbjct: 3043 KEAHFQMKTAALRGKQSKLFGLDGKVNTQDEDTERHTADDVNKNMHSLLGISM 3095


>emb|CAI59123.1| polyprotein [Thunberg fritillary virus]
          Length = 3129

 Score = 3028 bits (7850), Expect = 0.0
 Identities = 1537/2944 (52%), Positives = 2054/2944 (69%), Gaps = 22/2944 (0%)
 Frame = -1

Query: 8966 KKSKTLSARVH------YDWLNLVRAVANIQKRTGVVIELISNRRKVTANRLLKDNKRYV 8805
            KK+K + A V        D  NL      I    G  +E+I   +++  + + +  + Y+
Sbjct: 204  KKTKKVLAPVRGHCALECDIANLFHETLKIFGSRGKPVEVIEKGKRIRISNVRRGKRWYI 263

Query: 8804 RVVTKHELGYRHKCDV-RTGQWDRIVLKQLVEKSSGRLKHRADEFTPGSSGIALLSDKID 8628
            R    H  G +   ++ RT   + +V +    K +  ++       PG SGI   S+ + 
Sbjct: 264  RCFLPHMRGEKLAQELHRTSNLESLV-RVYNRKFNCDVEVDMRSIKPGDSGIVYNSELLR 322

Query: 8627 GQ-VSTSRGGVFIIRGRDGSKLYDSQCVVTTHVAARMHHYS--VSERFWKGYDRGFQMAR 8457
            GQ V T     FI+RG+   +L D++  +       +  +S  V+ +FW G +R F  +R
Sbjct: 323  GQRVETEH---FIVRGKLNGRLIDARSYMEVEDLLSIKEFSKDVATQFWDGLNRKFLQSR 379

Query: 8456 G-PTDHTCDSNLDVEECGLVAAIATQALFPCGKITCQQCVDKFTSSGKSELREEHSARLE 8280
                DH C+SNL V +CG VA +  QA++PCG+ITC++CV + T   + E       R++
Sbjct: 380  NFDDDHKCESNLSVAKCGEVAGLLIQAIYPCGRITCKKCVARATGLTRLEYGSLIETRVK 439

Query: 8279 ELIGRIQKNHPKFKHVIQXXXXXXXXXXXXXXNVDQFSEVNRMIGERQETPFKQLADLNN 8100
            ++   I+ ++  F H+                N+D FS +N ++ +++E+PF  + ++N+
Sbjct: 440  KVKEEIRADYKDFTHIPDILTHLERATTTSNDNLDDFSAINTIVFDKRESPFSHIREIND 499

Query: 8099 LMIKIGSCTSEEVALGTAKILEIVRFQRNRTDNIAKGSLAHFRNKVSSKVHVNLDLMCDN 7920
            +++K G  T+ +  + T  +LE+ R+ +NRTD IA+   A FRNK S+K H N DL+CDN
Sbjct: 500  VLMKSGEATNADFEMATHHLLEVTRYLKNRTDIIAESKTARFRNKASAKTHFNADLLCDN 559

Query: 7919 QLDDDGNFRWRQRAYHAKRLFSNFFDVIDPANGYDQFIKRKNPNGMRKTAIGNLIVSTNM 7740
            QLD +GNF W QR YHAKR  SN+F+ IDP  GY  ++ R++PNG+RK +I  LIVSTN+
Sbjct: 560  QLDKNGNFLWGQRGYHAKRFLSNYFERIDPDKGYAMYVDRRHPNGIRKLSIDKLIVSTNL 619

Query: 7739 QTFRQQMRGEPMESVPLSNACTSRLKGGFVYPCCCVTTDEGTPIESDMMIPTKDHLVIGN 7560
            +TFRQQM G  + S  +++ C S+  G +VY  CCVT D+GTP+ES  + PTK HLVIGN
Sbjct: 620  ETFRQQMAGRKVHSYSITDECVSKRGGSYVYQNCCVTHDDGTPVESGFLSPTKHHLVIGN 679

Query: 7559 TGDSKFVNMPR-MVEGMYIAKQGYCYVNIFLAMLINVSDAQSKDYTKKVRDIVIPKLGEW 7383
            TG++KFV++P+  +  MYIAK G+CY+NIF AMLINV + Q+K +TK VRD++IPKLG W
Sbjct: 680  TGEAKFVDLPQDEILQMYIAKDGHCYINIFFAMLINVREDQAKSFTKMVRDMIIPKLGVW 739

Query: 7382 PTLLDVATMCHFLTVFYPDVKSAELPRILVDHRNQIMHVIDSFGSLTTGYHILKANTVGQ 7203
            PT++DVAT C  LTVF+PD  +AELPRI VDH +++MHVIDS+GS  TGYH+LK+NTV Q
Sbjct: 740  PTVMDVATTCKLLTVFFPDTANAELPRIYVDHAHKMMHVIDSYGSYDTGYHLLKSNTVSQ 799

Query: 7202 LVKFSNDELQSEMMHYRVGGTMMSEESSEDAAVTLLARGVYRPTELKRVLEKDPLLLVYG 7023
             + FS+ +++SE+ +YRVGG  ++         TL+ + +YR   ++ +L  +P L++  
Sbjct: 800  FMNFSSIDMESELKYYRVGGKFVASHLVMTNFNTLI-KAIYRADLMRDILTHEPYLVMLA 858

Query: 7022 LLSPRVLIAMHKSKTLEMALDQWLHKDTSVANLCQMIDVLAKKVSVSKLFRTQQQIISEN 6843
            +LSP VL+A+  S +LE+A   W+ +D ++A +  M+ +LA KVSVSK+   Q++II  N
Sbjct: 859  VLSPGVLLALFNSGSLEVATRMWIRQDQNIAQIMTMLSILAAKVSVSKVLLEQKRIIEMN 918

Query: 6842 AMEIARCVDRCRTTSPSRTFVQLVLTRLVESRNTSKELLSAGFQTLMYEGEEMREKKFSE 6663
            A  + R  D       S       LT + E   + + L   GF   +    E+ EK + E
Sbjct: 919  AEHLLRATDHTFFPCKSIDTAICALTVMDEEHKSDQALRDNGFYAHLLNSSEILEKSYME 978

Query: 6662 VLAHSWRDLNWSQRCSAIWHSRKA-SQHATNSSIEPEQTDSGETWTERFICLRGKLTSHV 6486
             L  SW +L+   R   I+ SRK   ++     +E      G   T    CL   +  H 
Sbjct: 979  DLEASWLELSLWARLRLIFQSRKLHKKYLGFVELENRTGTIGRYSTSLSACLT--MMKHN 1036

Query: 6485 KVWTTSAL-SNGKRKAYETCGKVVCKLITSTKFFCPDIIKMVNVLSVFCLLLQISTVVNR 6309
                   + S  K + Y   G+V C ++ + K+  PD++  +NVL+V  LLL I   +  
Sbjct: 1037 STQCVKKIKSKTKTRMYNIVGRVTCAMVGNCKYLFPDLVHFMNVLTVLGLLLAIYRSIFV 1096

Query: 6308 HLLQYRILKEEQQNMRDDKDFETMMGIYN-LYVKTYEGEYPTLKQFSTYLQKVNPQIYAY 6132
            H+ +Y+ LK ++Q   D+++ +    IY  L ++T     PT+++F   L  ++P++  +
Sbjct: 1097 HIAEYKSLKAKEQASVDERNAKIAGAIYKELGMETKI--LPTIEEFRERLGSLSPELLTW 1154

Query: 6131 YERTMGEPDDTDECVELQAKGKGEIELERTIAFVALIMMMFDAERSDCVYKVLNKLRGIM 5952
            ++ T    D        QAK  GE  LER +A  AL++M+FDAERSD VYK+LNKL+ ++
Sbjct: 1155 FDGTYKLEDYI-----FQAKTDGERNLERVVAVSALLLMIFDAERSDVVYKILNKLKTLI 1209

Query: 5951 NPISAETVAFQGLDDMKELLGETKMAIDIELDTENHQLNRLGGVTFGDWWTHQLNQNRTV 5772
              + AE + FQ LDD +++L E  + +D E+  +N  L   GG TF  WW HQL  N  +
Sbjct: 1210 GVVEAEPMKFQSLDDARDILEEKNLTVDFEIQGDNECLPIQGGTTFEQWWNHQLLHNNVI 1269

Query: 5771 PHYRTEGKFVEFTRANAMIVANEIAHSDQTDFLVMGAVGSGKSTGLPFHLSRKGKVLMIE 5592
            PHYRTEG F+EFTR +A+ VANEIAH   TD+L+ GAVGSGKST LPFHLS KG VL++E
Sbjct: 1270 PHYRTEGHFIEFTRESAVAVANEIAHGPHTDYLIRGAVGSGKSTALPFHLSAKGGVLLLE 1329

Query: 5591 PTKPLAENVHKQLKGNPFMSNATLRMRGCSVFGSSPITVMTSGYALHYFAHNIAQLAEYQ 5412
            PTKPLAENV+KQL+  PF  N TLRMRG +  GS+P+T+MTSG+ALHY+A+NI +L E +
Sbjct: 1330 PTKPLAENVYKQLRKEPFFLNPTLRMRGTTYIGSAPVTIMTSGFALHYYANNIKRLEEIK 1389

Query: 5411 FVIIDECHVHDASAMAFRCLLLEYDYQGKVLKVSATPPGREATFNTQHPVLVKMEESLSF 5232
             +I DECHVHD++AMAFRCLL EY + GK+LKVSATPPGRE  F TQ PV + +EE+LS 
Sbjct: 1390 HIIFDECHVHDSNAMAFRCLLSEYAFCGKILKVSATPPGREIEFTTQKPVELLIEENLSI 1449

Query: 5231 QQFVALQGSGANGDITQNGDNILIYVASYNEVDTLSKMLLDKNHKVTKVDGRTMKMGQVE 5052
            QQFV+  GS +N D+T  GD+IL+YVASYNEVD LSK+LL+KN KVTKVDGRTMK G+ E
Sbjct: 1450 QQFVSNLGSKSNSDVTTKGDSILVYVASYNEVDQLSKLLLEKNFKVTKVDGRTMKSGRTE 1509

Query: 5051 IPTAGTKEKKHFIVATNIIENGVTLDIDVVVDFGMKVVPELDIDNRLIRYSKVAISYGER 4872
            I T GT E+KHFIVATNIIENGVTLDIDVVVDFG KVVPELD D RLIRY KV++SYGER
Sbjct: 1510 IETHGTSERKHFIVATNIIENGVTLDIDVVVDFGTKVVPELDGDARLIRYRKVSVSYGER 1569

Query: 4871 IQRLGRVGRNKEGVALRIGVTEKGLSAVPNVTATEAAFYCFAYGLPVMTSGVAVSMLSNC 4692
            IQRLGRVGR K GVALRIG TE+GL AVP V ATEAAF+ F YGLPVMT GV+ S+LSNC
Sbjct: 1570 IQRLGRVGRFKPGVALRIGSTERGLQAVPGVVATEAAFHSFTYGLPVMTEGVSTSILSNC 1629

Query: 4691 TVNQARTMMHFELPLFYMVHMVRFDGSMHPELHKCLKDYKLRDSEIILNKMAIPSSGVKS 4512
            TV QARTMM+FELP+F+   +VRFDG+MH  +HK L  YKLRDS+I LN++AIP+   K 
Sbjct: 1630 TVPQARTMMNFELPIFFTAPLVRFDGTMHAAVHKLLIPYKLRDSDITLNRLAIPTVSQKG 1689

Query: 4511 WMTAGEYSRLGARNSIEEFVRIPFYARDIPDKVHERVWEVVVTFKRDAGFGKIQSASACK 4332
            W TA EY+  G R ++E+ + IPFYARDIP+K+   +  VVV  K D+GFG++ SASA +
Sbjct: 1690 WKTAREYAMHGCRLNVEDEITIPFYARDIPEKLISELHTVVVNNKSDSGFGRVSSASAAR 1749

Query: 4331 VAYTLQTDAASIPRTICIIEELIKNEVKKQEYFQVASGVDCG-SGFSLINITNALRSRHM 4155
            +AYTLQTD  SI RTI II++LI+ E +K+ YF   +G+    S FSL +I NA+++RHM
Sbjct: 1750 IAYTLQTDPCSIQRTIAIIDKLIEAEQRKKAYFDSVTGISVSTSNFSLSSIINAIKTRHM 1809

Query: 4154 SNHTAENIAILEAAKNQIYEFRNLGIDPSSKTVCDF---GALECVQFQSAEGVSKQLKLK 3984
            +NHTAENI +L+AAK Q+ EFRN+ +D   +TV  F   GALEC+ FQS   +SK L+LK
Sbjct: 1810 TNHTAENIGVLQAAKGQLMEFRNITLD--WETVDKFGQNGALECLHFQSEVEMSKHLRLK 1867

Query: 3983 GHWNKSLITKDLLVAGFTLFGGLWMLYNHFKRAATTLVEFQASGKRQSQKRRFQIARNHK 3804
            GHWNKSLIT D +VAG    GG+WMLY HFK        FQA  KRQ QK RF+ AR++K
Sbjct: 1868 GHWNKSLITTDTIVAGTVFIGGVWMLYTHFKDTIKQTYSFQAKNKRQRQKLRFRQARDNK 1927

Query: 3803 HAYEVNPDQTDVEHYFGEAYAKKPQQKGRTKGMGAKSRRFYNIYGFDPAEYTFARYVDPL 3624
            HA EV  D  ++EHYFG AY  K + KG T GMG K RRF N+YGFD  +Y+FARYVDPL
Sbjct: 1928 HAIEVYGDDANLEHYFGSAYTAKGKSKGNTCGMGTKIRRFVNMYGFDVTDYSFARYVDPL 1987

Query: 3623 TGYTLDENALTDARLVQEHFGKIRLELREQDKLDAQALMANQKIEAYFVKDLAKQILKID 3444
            TG T+DEN LTD  +VQEHFGK+R +    D+LD   +  N KIEAYFVK+ AK++LK+D
Sbjct: 1988 TGATIDENPLTDLGMVQEHFGKVRTQFINDDQLDPNQVRLNTKIEAYFVKNAAKEVLKVD 2047

Query: 3443 MTPHRPLELGCKTSTIAGYPEREGELRQAAPHVIVDASVLPKQNEYTSEGAEFESKATYQ 3264
            +TPH PL+LG    +I+G+PERE ELRQ    V++  S LP++NE  +E   FES + + 
Sbjct: 2048 LTPHNPLQLGDTVPSISGFPERELELRQTGKPVMIPYSQLPERNEKETESLVFESASNFH 2107

Query: 3263 GLRDYNSISSSICLLENDSDGYTMKIHGIGFGSMIITNQHLFKRNNGSLKIQSHRGEFLV 3084
            GLRDYN I+ ++C L+N SDG    + GIG+GS+II NQHLF+ NNG+L ++SH GEF V
Sbjct: 2108 GLRDYNPIAMTVCSLQNTSDGVVTTLFGIGYGSVIIANQHLFRCNNGTLCVKSHHGEFKV 2167

Query: 3083 PNTTQLKMYPFEGRDLLLIQMPKDFPPFPQKLKFRLPVSGERVCLIGSNFQEKYISSTVS 2904
             NTT+L+++P  GRD++LI++PKDFPPFP+KLKFR    GERVCL+GSNFQ + ISSTVS
Sbjct: 2168 ANTTELQLFPVNGRDIILIKLPKDFPPFPRKLKFRCVEKGERVCLVGSNFQTRSISSTVS 2227

Query: 2903 ESSVIAQKDNTSFFRHWITTQKGHCGLPLVSVKDGHILGIHSMTSLEDSSSFFISLPPDI 2724
            E+SV A   + +F +HWITT+ G CGLP+VS KDG I+G+HS++S   S++ F ++P + 
Sbjct: 2228 ETSVTAPSPSEAFTKHWITTKDGQCGLPIVSTKDGKIIGLHSLSSTVSSTNMFTNIPSEF 2287

Query: 2723 GPKYLQNEENIEWTKKWRLNLELINWGAFKLSNEKPDNLFKLSKDIFELLDEPVDFQAK- 2547
              K L   +++EWTKKWRLN++  NWGA  + ++    LFKLSKDI  + D   +FQA  
Sbjct: 2288 EEKVLMCIDSLEWTKKWRLNVDKANWGAVNIKDDLASGLFKLSKDISSIHDSEWNFQAGF 2347

Query: 2546 EGGWLYDRLGGNITAMARTSNQLVTKHVVKGQCLLFQTYLETHPEASNFFKPLMGFYQKS 2367
            +  WLY++L GN+ A+ RT + LVTKHVV+G+C LF  YL    +A+++F PL+G YQKS
Sbjct: 2348 KQNWLYEQLDGNLKAVGRTPSALVTKHVVRGKCNLFAAYLALGKQANDYFTPLLGSYQKS 2407

Query: 2366 RLNKEAYIKDLFKYNAPTTVGVLNPHVFELAEESVYNMFVGIGFQKCVYVTDQEAIFSAL 2187
            RLN+EAYIKD+ KY +P  VG ++   FE A + V  +F  +GF++C Y+TD   IF AL
Sbjct: 2408 RLNREAYIKDVKKYASPIIVGSVDCDAFEEAFKDVIKVFTDVGFKECAYITDHVEIFDAL 2467

Query: 2186 NMKAATGALYQGKKKEYFENFTEADKAQILKDSCFRLYTGKLGVWNGSLKAELRPLEKVQ 2007
            N KAATGALY+GKK EY   ++E++K ++LK+SC RL+ GK+GVWNGSLKAELRP+EK  
Sbjct: 2468 NKKAATGALYKGKKGEYLAGYSESEKEEMLKESCKRLFLGKMGVWNGSLKAELRPIEKCI 2527

Query: 2006 ANKTRSFTAAPIDTLLGGKVCVDDFNNQFYSLNLKAPWSVGMTKFYGGWNTLIRSLPEGW 1827
            ANKTRSFTAAPIDTLLGGK CVDDFNNQFYSL+   P SVGMTKFYGGWN L+  LP+ +
Sbjct: 2528 ANKTRSFTAAPIDTLLGGKTCVDDFNNQFYSLHFALPSSVGMTKFYGGWNDLLCKLPDNY 2587

Query: 1826 IYCDADGSQFDSSLTPYLINAVLNLRLRFMEDWDVGTQMLENLYTEIVYTPIATPDGTIV 1647
            +YCDADGSQFDSSL+PYLINAVLNLRL FMEDW VG  MLENLYTEIVYTPIATPDGTI+
Sbjct: 2588 VYCDADGSQFDSSLSPYLINAVLNLRLHFMEDWGVGHTMLENLYTEIVYTPIATPDGTII 2647

Query: 1646 KKYKGNNSGQPSTVVDNTIMVILAMHYASGLYNSDVAITEYCVFFVNGDDLIIAVHPDHQ 1467
            KK+KGNNSG PSTVVDNTIMV+LA++YA  + +   +  ++  +++NGDDL+IA+ PD +
Sbjct: 2648 KKFKGNNSGPPSTVVDNTIMVMLAVNYALRVNHITESAHDFIRYYINGDDLLIAIRPDME 2707

Query: 1466 AFLDGLKESFTHLGLKYDFSNRCQSREDLWFMSHKAILSGDIYIPKLEEERIVSILEWDR 1287
              LD  +ESF  LGL Y F++R +++ +LWFMSH+ IL   I+IPKLE ER+VSILEWDR
Sbjct: 2708 HLLDKFQESFQQLGLNYTFNSRTRNKTELWFMSHQGILRDGIFIPKLERERVVSILEWDR 2767

Query: 1286 AILPEHRLEAICASMIEAWGYPDLLYQIRRFYYWVLEQAPYNHLSQTGKAPYISEAALKN 1107
            A LPEHRLEAICA+MIEAWG+ +L++++RRFY+WVL+Q PYN L+  GKAPYISE ALK 
Sbjct: 2768 AELPEHRLEAICAAMIEAWGHDELIHEVRRFYHWVLQQEPYNELAAQGKAPYISEVALKA 2827

Query: 1106 LYT-NQSSPSELQRYVDSLEWNNLTGEEAVEFQGTEDESLNAG-DQTKKTSEAKGKDNKE 933
            LYT   ++ SEL RY +++E  N+  ++   FQ    E ++ G DQ +K ++   +   E
Sbjct: 2828 LYTGTAATESELVRYYNTMERLNVVMDDEFCFQADRTEQIDTGRDQARKRNQETNQG--E 2885

Query: 932  KALETRPKDKDVDVGTSGIYQVPKLKAIGTKFCLPKVKGRTIVNLDHLISYEPEQINLSN 753
             + +   ++ DV+VG++G   VP+L+ I +K  LP V+G+ IVNLDHL+ Y P+Q  + N
Sbjct: 2886 SSQQAIVREPDVNVGSAGALTVPRLREINSKINLPMVRGKRIVNLDHLLLYTPQQTGMYN 2945

Query: 752  ARATQSQFAQWYNGVKDAYELDDNSMGIVMSGLMVWCIENGTSPNINGQWTMMDGDEQVE 573
             RATQ+QFA WY+GVK  YEL+D  M IV++GLMVWCIENGTSPN+NG W MMDGD+QVE
Sbjct: 2946 TRATQTQFAVWYDGVKQDYELEDVQMQIVLNGLMVWCIENGTSPNLNGMWVMMDGDKQVE 3005

Query: 572  YPLKPVVENAQPSLRQIMAHFSALAEAYIEKRNATKPYMPRYGLLRNLRDSSLARYAFDF 393
            +P+KP++++A+P+ RQIMAHFS LAEAYI KRN TKPYMPRY L RNL D SLA+YAFDF
Sbjct: 3006 FPIKPLLDHAKPTFRQIMAHFSELAEAYIIKRNITKPYMPRYALKRNLTDMSLAQYAFDF 3065

Query: 392  YEVTSRTPPRAREAHLQMKAAAIRNSSTKMFGLDGNAGDKEEDTERHTANDVSKNMHSLM 213
             E+TSRTP RAREA  QMKAAA++N+ T+MFGLDG+ G  EEDTERHT  DV+++MHS++
Sbjct: 3066 LEITSRTPARAREAQAQMKAAALKNARTRMFGLDGSVGTTEEDTERHTTTDVNRSMHSML 3125

Query: 212  GVRM 201
            GVRM
Sbjct: 3126 GVRM 3129


>ref|YP_254713.1| polyprotein [Thunberg fritillary virus] gi|68262520|emb|CAH65461.1|
            polyprotein [Thunberg fritillary virus]
          Length = 3129

 Score = 3026 bits (7846), Expect = 0.0
 Identities = 1540/2947 (52%), Positives = 2054/2947 (69%), Gaps = 25/2947 (0%)
 Frame = -1

Query: 8966 KKSKTLSARVH------YDWLNLVRAVANIQKRTGVVIELISNRRKVTANRLLKDNKRYV 8805
            KK+K + A V        D  NL+     I    G  +E+I   ++   + + +  + Y+
Sbjct: 204  KKTKKVLAPVRGHCALECDIANLLHETLKIFGSRGKPVEVIEKGKRTRISNVRRGKRWYI 263

Query: 8804 RVVTKHELGYRHKCDV-RTGQWDRIVLKQLVEKSSGRLKHRADEFTPGSSGIALLSDKID 8628
            R    H  G +   ++ RT   + +V +    K +  ++       PG SGI    + + 
Sbjct: 264  RCFLPHMRGEKLAQELNRTSNLESLV-RVYNRKFNRDVEVDMRSIKPGDSGIVYNGELLR 322

Query: 8627 GQ-VSTSRGGVFIIRGRDGSKLYDSQCVVTTHVAARMHHYS--VSERFWKGYDRGFQMAR 8457
            GQ V T     FI+RG+   +L D++  +       +  +S  V+ +FW G +R F  AR
Sbjct: 323  GQRVETEH---FIVRGKLNGRLIDARSYMEVEDLLSIKEFSKDVATQFWDGLNRKFLQAR 379

Query: 8456 G-PTDHTCDSNLDVEECGLVAAIATQALFPCGKITCQQCVDKFTSSGKSELREEHSARLE 8280
                DH C+SNL V +CG VA +  QA++PCG+ITC++C+ + T   + E       R++
Sbjct: 380  NFDDDHKCESNLSVAKCGEVAGLLIQAIYPCGRITCKKCIARATGLTRLEYGSFIGTRVK 439

Query: 8279 ELIGRIQKNHPKFKHVIQXXXXXXXXXXXXXXNVDQFSEVNRMIGERQETPFKQLADLNN 8100
            ++   I+ ++  F H+                N+D FS +N ++ +++E+PF  + ++N+
Sbjct: 440  KVKEEIRADYKDFTHIPDILTHLERATTTSNDNLDDFSAINTIVFDKKESPFSHIREIND 499

Query: 8099 LMIKIGSCTSEEVALGTAKILEIVRFQRNRTDNIAKGSLAHFRNKVSSKVHVNLDLMCDN 7920
            +++K G  T+ +  + T  +LE+ R+ +NRTD IA+   A FRNK S+K H N DLMCDN
Sbjct: 500  VLMKSGEATNADFEMATHHLLEVTRYLKNRTDIIAESKTARFRNKASAKTHFNADLMCDN 559

Query: 7919 QLDDDGNFRWRQRAYHAKRLFSNFFDVIDPANGYDQFIKRKNPNGMRKTAIGNLIVSTNM 7740
            +LD +GNF W QR YHAKR   N+F+ IDP  GY  ++ R++PNG+RK +I  LIVSTN+
Sbjct: 560  RLDKNGNFLWGQRGYHAKRFLLNYFERIDPDKGYAMYVDRRHPNGIRKLSIDKLIVSTNL 619

Query: 7739 QTFRQQMRGEPMESVPLSNACTSRLKGGFVYPCCCVTTDEGTPIESDMMIPTKDHLVIGN 7560
            +TFRQQM G  + S  +++ C S+  G +VY  CCVT D+GTP+ES  + PTK HLVIGN
Sbjct: 620  ETFRQQMAGRKVHSYSITDECVSKRGGSYVYQNCCVTHDDGTPVESGFLSPTKHHLVIGN 679

Query: 7559 TGDSKFVNMPR-MVEGMYIAKQGYCYVNIFLAMLINVSDAQSKDYTKKVRDIVIPKLGEW 7383
            TG++KFV++P+  +  MYIAK GYCY+NIF AMLINV + Q+K +TK VRD++IPKLG W
Sbjct: 680  TGEAKFVDLPQDEILQMYIAKDGYCYINIFFAMLINVREDQAKSFTKMVRDMIIPKLGVW 739

Query: 7382 PTLLDVATMCHFLTVFYPDVKSAELPRILVDHRNQIMHVIDSFGSLTTGYHILKANTVGQ 7203
            PT++DVAT C  LTVF+PD  +AELPRI VDH +++MHVIDS+GS  TGYH+LK+NTV Q
Sbjct: 740  PTVMDVATTCKLLTVFFPDTANAELPRIYVDHAHKMMHVIDSYGSYDTGYHLLKSNTVSQ 799

Query: 7202 LVKFSNDELQSEMMHYRVGGTMMSEESSEDAAVTLLARGVYRPTELKRVLEKDPLLLVYG 7023
             + FS+ +++SE+ +YRVGG  ++         TL+ + +YR   ++ +L  +P L++  
Sbjct: 800  FMNFSSIDMESELKYYRVGGKFVASHLVMTNFNTLI-KAIYRADLMRDILTHEPYLVMLA 858

Query: 7022 LLSPRVLIAMHKSKTLEMALDQWLHKDTSVANLCQMIDVLAKKVSVSKLFRTQQQIISEN 6843
            +LSP VL+A+  S +LE+A   W+ +D ++A +  M+ +LA KVSVSK+   Q++II  N
Sbjct: 859  VLSPGVLLALFNSGSLEVATRMWIRQDQNIAQIMTMLSILAAKVSVSKVLLEQKRIIEMN 918

Query: 6842 AMEIARCVDRCRTTSPSRTFVQLVLTRLVESRNTSKELLSAGFQTLMYEGEEMREKKFSE 6663
            A  + R  D       S       LT + E   + + L   GF   +    E+ EK + E
Sbjct: 919  AEHLLRATDHTFFPCKSIDTAICALTVMDEEHKSDQALRDNGFYAHLLNSSEILEKSYME 978

Query: 6662 VLAHSWRDLNWSQRCSAIWHSRKA-SQHATNSSIEPEQTDSGETWTERFICL---RGKLT 6495
             L  SW +L+   R   I+ SRK   ++     +E      G   T    CL   +   T
Sbjct: 979  DLEASWLELSLWARLRLIFQSRKLHKKYLGFVELENRTGTIGRYSTSLSACLTMMKHNFT 1038

Query: 6494 SHVKVWTTSALSNGKRKAYETCGKVVCKLITSTKFFCPDIIKMVNVLSVFCLLLQISTVV 6315
              VK       S  K + Y   G+V C ++ + K+  PD++  +NVL+V   LL I   +
Sbjct: 1039 RCVK----KIKSKTKTRMYNIVGRVTCAMVGNCKYLFPDLVHFMNVLTVLGFLLTIYRSI 1094

Query: 6314 NRHLLQYRILKEEQQNMRDDKDFETMMGIYN-LYVKTYEGEYPTLKQFSTYLQKVNPQIY 6138
              H+ +Y+ LK ++Q   D+++ +    IY  L ++T     PT+++F   L  ++P++ 
Sbjct: 1095 FVHIAEYKSLKAKEQASVDERNAKIAGAIYKELGMETKI--LPTIEEFRERLGSLSPELL 1152

Query: 6137 AYYERTMGEPDDTDECVELQAKGKGEIELERTIAFVALIMMMFDAERSDCVYKVLNKLRG 5958
             +++ T    D        QAK  GE  LER +A  AL++M+FDAERSD VYK+LNKL+ 
Sbjct: 1153 TWFDGTYKLEDYI-----FQAKTDGERNLERVVAVSALLLMIFDAERSDVVYKILNKLKT 1207

Query: 5957 IMNPISAETVAFQGLDDMKELLGETKMAIDIELDTENHQLNRLGGVTFGDWWTHQLNQNR 5778
            ++  +  E + FQ LDD +++L E  + +D EL  +N  L   GG TF  WW HQL  N 
Sbjct: 1208 LIGVVETEPMKFQSLDDARDILEEKNLTVDFELQGDNECLPIQGGTTFEQWWNHQLLHNN 1267

Query: 5777 TVPHYRTEGKFVEFTRANAMIVANEIAHSDQTDFLVMGAVGSGKSTGLPFHLSRKGKVLM 5598
             +PHYRTEG F+EFTR +A+ VANEIAH   TD+LV GAVGSGKSTGL FHLS KG VL+
Sbjct: 1268 VIPHYRTEGHFIEFTRESAVAVANEIAHGPHTDYLVRGAVGSGKSTGLLFHLSAKGGVLL 1327

Query: 5597 IEPTKPLAENVHKQLKGNPFMSNATLRMRGCSVFGSSPITVMTSGYALHYFAHNIAQLAE 5418
            +EPTKPLAENV+KQL+  PF  N TLRMRG +  GS+P+T+MTSG+ALHY+A+NI +L E
Sbjct: 1328 LEPTKPLAENVYKQLRKEPFFLNPTLRMRGTTYIGSAPVTIMTSGFALHYYANNIKRLEE 1387

Query: 5417 YQFVIIDECHVHDASAMAFRCLLLEYDYQGKVLKVSATPPGREATFNTQHPVLVKMEESL 5238
             + +I DECHVHD++AMAFRCLL EY + GK+LKVSATPPGRE  F TQ PV + +EE+L
Sbjct: 1388 IKHIIFDECHVHDSNAMAFRCLLSEYAFCGKILKVSATPPGREIEFTTQKPVELLIEENL 1447

Query: 5237 SFQQFVALQGSGANGDITQNGDNILIYVASYNEVDTLSKMLLDKNHKVTKVDGRTMKMGQ 5058
            S QQFV+  GS +N D+T  GD+IL+YVASYNEVD LSK+LL+KN KVTKVDGRTMK G+
Sbjct: 1448 SIQQFVSNLGSKSNSDVTAKGDSILVYVASYNEVDQLSKLLLEKNFKVTKVDGRTMKSGR 1507

Query: 5057 VEIPTAGTKEKKHFIVATNIIENGVTLDIDVVVDFGMKVVPELDIDNRLIRYSKVAISYG 4878
             EI T GT E+KHFIVATNIIENGVTLDIDVVVDFG KVVPELD D RLIRY KV++SYG
Sbjct: 1508 TEIETHGTSERKHFIVATNIIENGVTLDIDVVVDFGTKVVPELDGDARLIRYRKVSVSYG 1567

Query: 4877 ERIQRLGRVGRNKEGVALRIGVTEKGLSAVPNVTATEAAFYCFAYGLPVMTSGVAVSMLS 4698
            ERIQRLGRVGR K GVALRIG TE+GL AVP V ATEAAF+ F YGLPVMT GV+ S+LS
Sbjct: 1568 ERIQRLGRVGRFKPGVALRIGSTERGLQAVPGVVATEAAFHSFTYGLPVMTEGVSTSILS 1627

Query: 4697 NCTVNQARTMMHFELPLFYMVHMVRFDGSMHPELHKCLKDYKLRDSEIILNKMAIPSSGV 4518
            NCTV QARTMM+FELP+F+   +VRFDG+MH  +HK L  YKLRDS+I LN++AIP++  
Sbjct: 1628 NCTVPQARTMMNFELPIFFTAPLVRFDGTMHAAVHKLLIPYKLRDSDITLNRLAIPTASQ 1687

Query: 4517 KSWMTAGEYSRLGARNSIEEFVRIPFYARDIPDKVHERVWEVVVTFKRDAGFGKIQSASA 4338
            K W TA EY+  G R ++E+ + IPFYARDIP+K+   +  VVV  K D+GFG++ SASA
Sbjct: 1688 KGWNTAREYAMHGCRLNVEDEITIPFYARDIPEKLISELHTVVVNNKSDSGFGRVSSASA 1747

Query: 4337 CKVAYTLQTDAASIPRTICIIEELIKNEVKKQEYFQVASGVDCG-SGFSLINITNALRSR 4161
             ++AYTLQTD  SI RTI II++LI+ E +K+ YF   +G+    S FSL +I NA+++R
Sbjct: 1748 ARIAYTLQTDPCSIQRTIAIIDKLIEAEQRKKAYFDSVTGISVSTSNFSLSSIINAIKTR 1807

Query: 4160 HMSNHTAENIAILEAAKNQIYEFRNLGIDPSSKTVCDF---GALECVQFQSAEGVSKQLK 3990
            HM+NHTAENI +L+AAK Q+ EFRN+ +D   +TV  F   GALEC+ FQS   +SK L+
Sbjct: 1808 HMTNHTAENIGVLQAAKGQLMEFRNITLD--WETVDKFGQNGALECLHFQSEVEMSKHLR 1865

Query: 3989 LKGHWNKSLITKDLLVAGFTLFGGLWMLYNHFKRAATTLVEFQASGKRQSQKRRFQIARN 3810
            LKGHWNKSLIT D +VAG    GG+WMLY HFK        FQA  KRQ QK +F+ AR+
Sbjct: 1866 LKGHWNKSLITTDTIVAGTVFIGGVWMLYTHFKDTIKQTYSFQAKNKRQRQKLKFRQARD 1925

Query: 3809 HKHAYEVNPDQTDVEHYFGEAYAKKPQQKGRTKGMGAKSRRFYNIYGFDPAEYTFARYVD 3630
            +KHA EV  D  ++EHYFG AY  K + KG T GMG K RRF N+YGFD  +Y+FARYVD
Sbjct: 1926 NKHAIEVYGDDANLEHYFGSAYTAKGKSKGNTCGMGTKIRRFVNMYGFDVTDYSFARYVD 1985

Query: 3629 PLTGYTLDENALTDARLVQEHFGKIRLELREQDKLDAQALMANQKIEAYFVKDLAKQILK 3450
            PLTG T+DEN LTD  +VQEHFGK+R +    D+LD   +  N KIEAYFVK+ AK++LK
Sbjct: 1986 PLTGATIDENPLTDLGMVQEHFGKVRTQFISDDQLDPNQVRLNTKIEAYFVKNAAKEVLK 2045

Query: 3449 IDMTPHRPLELGCKTSTIAGYPEREGELRQAAPHVIVDASVLPKQNEYTSEGAEFESKAT 3270
            +D+TPH PL+LG    +I+G+PERE ELRQ    V++  S LP++NE  +E   FES + 
Sbjct: 2046 VDLTPHNPLQLGDIVPSISGFPERELELRQTGKPVLIPYSQLPERNEKETESLVFESASN 2105

Query: 3269 YQGLRDYNSISSSICLLENDSDGYTMKIHGIGFGSMIITNQHLFKRNNGSLKIQSHRGEF 3090
            + GLRDYN I+ ++C L+N SDG    + GIG+GS+II NQHLF+ NNG+L ++SH GEF
Sbjct: 2106 FHGLRDYNPIAMTVCSLQNTSDGVVATLFGIGYGSVIIANQHLFRCNNGTLCVKSHHGEF 2165

Query: 3089 LVPNTTQLKMYPFEGRDLLLIQMPKDFPPFPQKLKFRLPVSGERVCLIGSNFQEKYISST 2910
             V NTT+L+++P  GRD++LI++PKDFPPFP+KLKFR    GERVCL+GSNFQ + ISST
Sbjct: 2166 KVANTTELQLFPVNGRDIILIKLPKDFPPFPRKLKFRCVEKGERVCLVGSNFQTRSISST 2225

Query: 2909 VSESSVIAQKDNTSFFRHWITTQKGHCGLPLVSVKDGHILGIHSMTSLEDSSSFFISLPP 2730
            VSE+SV A   + +F +HWITT+ G CGLP+VS KDG I+G+HS++S   S++ F ++P 
Sbjct: 2226 VSETSVTAPSPSEAFTKHWITTKDGQCGLPIVSTKDGKIIGLHSLSSTVSSTNMFTNIPS 2285

Query: 2729 DIGPKYLQNEENIEWTKKWRLNLELINWGAFKLSNEKPDNLFKLSKDIFELLDEPVDFQA 2550
            +   K L   +++EWTKKWRLN++  NWGA  + ++    LFKLSKDI  + D   +FQA
Sbjct: 2286 EFEEKVLMCIDSLEWTKKWRLNVDKANWGAVNIKDDLASGLFKLSKDISSIHDSEWNFQA 2345

Query: 2549 K-EGGWLYDRLGGNITAMARTSNQLVTKHVVKGQCLLFQTYLETHPEASNFFKPLMGFYQ 2373
              +  WLY++L GN+ A+ RT N LVTKHVV+G+C LF  YL    +A+++F PL+G YQ
Sbjct: 2346 GFKQNWLYEQLDGNLKAIGRTPNALVTKHVVRGKCNLFAAYLALDKQANDYFTPLLGSYQ 2405

Query: 2372 KSRLNKEAYIKDLFKYNAPTTVGVLNPHVFELAEESVYNMFVGIGFQKCVYVTDQEAIFS 2193
            KSRLN+EAYIKD+ KY +P  VG ++   FE A + V  +F  +GF++C Y+TD    F 
Sbjct: 2406 KSRLNREAYIKDVKKYASPIIVGSVDCDAFEEAFKDVIKVFTDVGFKECAYITDHVETFD 2465

Query: 2192 ALNMKAATGALYQGKKKEYFENFTEADKAQILKDSCFRLYTGKLGVWNGSLKAELRPLEK 2013
            ALN KAATGALY+GKK EY   ++E++K ++LK+SC RL+ GK+GVWNGSLKAELRP+EK
Sbjct: 2466 ALNKKAATGALYKGKKGEYLAGYSESEKEEMLKESCKRLFLGKMGVWNGSLKAELRPIEK 2525

Query: 2012 VQANKTRSFTAAPIDTLLGGKVCVDDFNNQFYSLNLKAPWSVGMTKFYGGWNTLIRSLPE 1833
              ANKTRSFTAAPIDTLLGGK CVDDFNNQFYSL+   P SVGMTKFYGGWN L+  LP+
Sbjct: 2526 CIANKTRSFTAAPIDTLLGGKTCVDDFNNQFYSLHFALPSSVGMTKFYGGWNDLLCRLPD 2585

Query: 1832 GWIYCDADGSQFDSSLTPYLINAVLNLRLRFMEDWDVGTQMLENLYTEIVYTPIATPDGT 1653
             ++YCDADGSQFDSSL+PYLINAVLNLRL FMEDW VG  MLENLYTEIVYTPIATPDGT
Sbjct: 2586 NYVYCDADGSQFDSSLSPYLINAVLNLRLHFMEDWGVGHTMLENLYTEIVYTPIATPDGT 2645

Query: 1652 IVKKYKGNNSGQPSTVVDNTIMVILAMHYASGLYNSDVAITEYCVFFVNGDDLIIAVHPD 1473
            I+KK+KGNNSGQPSTVVDNTIMV+LA++YA  + +   +  ++  +++NGDDL+IA+ PD
Sbjct: 2646 IIKKFKGNNSGQPSTVVDNTIMVMLAVNYALRVNHITESAHDFIRYYINGDDLLIAIRPD 2705

Query: 1472 HQAFLDGLKESFTHLGLKYDFSNRCQSREDLWFMSHKAILSGDIYIPKLEEERIVSILEW 1293
             +  LD  +ESF  LGL Y F++R +++ +LWFMSH+ IL   I+IPKLE ER+VSILEW
Sbjct: 2706 MEHLLDKFQESFQQLGLNYTFNSRTRNKTELWFMSHQGILRDGIFIPKLERERVVSILEW 2765

Query: 1292 DRAILPEHRLEAICASMIEAWGYPDLLYQIRRFYYWVLEQAPYNHLSQTGKAPYISEAAL 1113
            DRA LPEHRLEAICA+MIEAWG+ +L++++RRFY+WVL+Q PYN L+  GKAPYISE AL
Sbjct: 2766 DRAELPEHRLEAICAAMIEAWGHDELIHEVRRFYHWVLQQEPYNELAAQGKAPYISEVAL 2825

Query: 1112 KNLYT-NQSSPSELQRYVDSLEWNNLTGEEAVEFQGTEDESLNAG-DQT-KKTSEAKGKD 942
            K LYT   ++ SEL RY +++E  N+  ++   FQ    E ++AG DQ  K+T E    +
Sbjct: 2826 KALYTGTAATESELVRYYNTMERLNVVMDDEFCFQADRTEQIDAGRDQVRKRTQETNQGE 2885

Query: 941  NKEKALETRPKDKDVDVGTSGIYQVPKLKAIGTKFCLPKVKGRTIVNLDHLISYEPEQIN 762
              ++A+   P   DV+VG++G   VP+L+ I +K  LP V+G+ IVNLDHL+ Y P+Q +
Sbjct: 2886 GSQQAIVREP---DVNVGSAGALTVPRLREINSKINLPMVRGKRIVNLDHLLLYTPQQTD 2942

Query: 761  LSNARATQSQFAQWYNGVKDAYELDDNSMGIVMSGLMVWCIENGTSPNINGQWTMMDGDE 582
            + N RATQ+QFA WY+GVK  YEL+D+ M IV++GLMVWCIENGTSPN+NG W MMD D+
Sbjct: 2943 IYNTRATQTQFAAWYDGVKQDYELEDDQMQIVLNGLMVWCIENGTSPNLNGMWVMMDEDK 3002

Query: 581  QVEYPLKPVVENAQPSLRQIMAHFSALAEAYIEKRNATKPYMPRYGLLRNLRDSSLARYA 402
            QVE+P+KP++++A+P+ RQIMAHFS LAEAYI KRN TKPYMPRY L RNL D SLA+YA
Sbjct: 3003 QVEFPIKPLLDHAKPTFRQIMAHFSELAEAYIIKRNITKPYMPRYALKRNLTDMSLAQYA 3062

Query: 401  FDFYEVTSRTPPRAREAHLQMKAAAIRNSSTKMFGLDGNAGDKEEDTERHTANDVSKNMH 222
            FDF E+TSRTP RAREA  QMKAAA++N+ T+MFGLDG+ G  EEDTERHT  DV+++MH
Sbjct: 3063 FDFLEITSRTPARAREAQAQMKAAALKNARTRMFGLDGSVGTTEEDTERHTTTDVNRSMH 3122

Query: 221  SLMGVRM 201
            S++G+RM
Sbjct: 3123 SMLGIRM 3129


>gb|AKI32473.1| polyprotein [Potato virus A]
          Length = 3059

 Score = 3005 bits (7790), Expect = 0.0
 Identities = 1523/2928 (52%), Positives = 2030/2928 (69%), Gaps = 16/2928 (0%)
 Frame = -1

Query: 8939 VHYDWLNLVRAVANIQKRTGVVIELISNRRKVTANRLLKDNKRYV-RVVTKHELGYRHKC 8763
            V Y    L R + N+ KRTG+ +E++    K T  R  K    ++ RV  KH  G  H+ 
Sbjct: 156  VPYSVQQLCRTLGNLSKRTGITLEIVGKNSKATKLRFTKTVFGHMARVQLKHHNGMMHRR 215

Query: 8762 DVRTGQWDRIVLKQLVEKSSGRLKHRADEFTPGSSGIALLSDKIDGQVSTSRGGVFIIRG 8583
            D+   +   ++++ L  K++ +     D  T GSSG+   +  + GQ   +R    ++RG
Sbjct: 216  DLVVDRSTTVIMQTLFSKTA-KTNANLDVLTHGSSGLVFWNYVVSGQRMRTRDNFIVVRG 274

Query: 8582 RDGSKLYDSQCVVTTHVAARMHHYSVSERFWKGYDRGFQMARGPT--DHTCDSNLDVEEC 8409
            R    L D++  ++       HHYS  + FW+G+++ F +   P   DH C S+  VEEC
Sbjct: 275  RCNGILVDARAKLSESTMLATHHYSTGDVFWRGFNKTF-LENKPINLDHVCSSDFSVEEC 333

Query: 8408 GLVAAIATQALFPCGKITCQQCVDKFTSSGKSELREEHSARLEELIGRIQKNHPKFKHVI 8229
            G +AA+  Q+L PCGKITC+ C  K  S  +   +E  + R  E+   I   +P F  V 
Sbjct: 334  GSIAALICQSLLPCGKITCRACAAKNLSMDEDTFKEFQTQRAREMSAIILSKYPNFACVS 393

Query: 8228 QXXXXXXXXXXXXXXNVDQFSEVNRMIGERQETPFKQLADLNNLMIKIGSCTSEEVALGT 8049
            Q              NV+ + E+ +++G   ++P+  + +LN +++  G  T E+++  +
Sbjct: 394  QFIERYFSHQRVLNPNVNAYREILKIVGGFTQSPYTHIQELNEILVLGGRATPEQLSSAS 453

Query: 8048 AKILEIVRFQRNRTDNIAKGSLAHFRNKVSSKVHVNLDLMCDNQLDDDGNFRWRQRAYHA 7869
            A +LEI RF RNRTDNI KGSLA FRNK+S+K HVN  LMCDNQLD +GN  W +R YHA
Sbjct: 454  AHLLEITRFVRNRTDNIKKGSLALFRNKISAKAHVNTALMCDNQLDKNGNLIWGERGYHA 513

Query: 7868 KRLFSNFFDVIDPANGYDQFIKRKNPNGMRKTAIGNLIVSTNMQTFRQQMRGEPMESVPL 7689
            KR FSN+FD+I P  GY Q+I+R+ PNG+RK AIGNLIV+TN++  R+Q+ GEP+E   +
Sbjct: 514  KRFFSNYFDIITPGGGYKQYIERRVPNGVRKLAIGNLIVTTNLEALREQLEGEPVEKKVI 573

Query: 7688 SNACTSRLKGGFVYPCCCVTTDEGTPIESDMMIPTKDHLVIGNTGDSKFVNMPRMVEG-M 7512
            + AC S     + YPCCCVT D+GTP+ S  ++PTK+HLVIGN+GD KF+++P  +   M
Sbjct: 574  TKACVSMSDNNYKYPCCCVTLDDGTPLYSTFIMPTKNHLVIGNSGDPKFLDLPTDISTQM 633

Query: 7511 YIAKQGYCYVNIFLAMLINVSDAQSKDYTKKVRDIVIPKLGEWPTLLDVATMCHFLTVFY 7332
            YIAK GYCY+NIFLAML+NV +  +KD+TKKVRDI++P LGEWPTL+DVAT C  L+ FY
Sbjct: 634  YIAKSGYCYINIFLAMLVNVDEPDAKDFTKKVRDIIVPDLGEWPTLIDVATSCSLLSAFY 693

Query: 7331 PDVKSAELPRILVDHRNQIMHVIDSFGSLTTGYHILKANTVGQLVKFSNDELQSEMMHYR 7152
            P   +AELPRIL+DH  + MHVIDS+GSL TGYH+LKANTV QL++F+++ L SEM HYR
Sbjct: 694  PATSAAELPRILIDHDLKTMHVIDSYGSLNTGYHVLKANTVRQLIQFASNSLDSEMKHYR 753

Query: 7151 VGGTMMSEESSEDAAVTLLARGVYRPTELKRVLEKDPLLLVYGLLSPRVLIAMHKSKTLE 6972
            VGGT  S+ +   + + +LA+ VYRP  ++ ++ + P +LV  L+SP VLIA+  S  LE
Sbjct: 754  VGGTSNSQINGY-STIKMLAKAVYRPKLMREIIHEQPYMLVMSLMSPGVLIALANSGALE 812

Query: 6971 MALDQWLHKDTSVANLCQMIDVLAKKVSVSKLFRTQQQIISENAMEIARCVDRCRTTSPS 6792
            M +  W+ +  S+  +  M+  LA+ VSV++    QQ+IIS++A ++   +     T P+
Sbjct: 813  MGIHHWIREGDSLVKMAHMLRTLAQNVSVARATWVQQEIISDSAQQMLEII--LNGTIPN 870

Query: 6791 RTFVQLV--LTRLVESRNTSKELLSAGFQTLMYEGEEMREKKFSEVLAHSWRDLNWSQRC 6618
             ++ Q +  LT L  S+    E+   G+ T   +  E+ EK +  +L  SW++L++  R 
Sbjct: 871  VSYFQAIQYLTMLAASKEADAEVRDTGYYTFKLQTSELLEKTYLSLLEDSWQELSYFGRF 930

Query: 6617 SAIWHSRKASQHATNSSIEPEQ-TDSGETWTERFICLRGKLTSHVKVWTTSALSNGKRKA 6441
             AI HSRK     T   ++PE+  D G  +   +     K   + K     A++  + + 
Sbjct: 931  QAIRHSRKFCTTGT-IVVKPERHVDLGGIYATSYQFALAKQMEYSKKAVYQAVNGLQVRF 989

Query: 6440 YETCGKVVCKLITSTKFFCPDIIKMVNVLSVFCLLLQISTVVNRHLLQYRILKEEQQNMR 6261
            +    KV CK++   K   PD++K +N +    + LQ+       L  ++  K++   + 
Sbjct: 990  HNITSKVYCKILNWPKRLFPDLVKFINTMLAITIALQLYIAFATILRHHQQCKQDSLELE 1049

Query: 6260 DDKDFETMMGIYNLYVKTYEGEYPTLKQFSTYLQKVNPQIYAYYERTMGEPDDTDECVEL 6081
              K    ++ +Y+ ++  +   + T ++F T++   NP +  +      E       V  
Sbjct: 1050 YCKKERQLITLYDFFIARHP--HATEEEFITHVDNQNPDLSTFAREYCAE------VVLF 1101

Query: 6080 QAKGKGEIELERTIAFVALIMMMFDAERSDCVYKVLNKLRGIMNPISAETVAFQGLDDMK 5901
            QAK   ++  ER IAF++L++MMFD+ERSDCVY+ L KL+ +M+ +   TV FQ LDD+ 
Sbjct: 1102 QAKASEQVNFERIIAFISLVLMMFDSERSDCVYRSLTKLKSLMSTVE-NTVQFQSLDDIG 1160

Query: 5900 ELLGETKMAIDIELDTENHQLNRLGGVTFGDWWTHQLNQNRTVPHYRTEGKFVEFTRANA 5721
              L E  M ID +LDT+      + G TF +WW  QLN NR VPHYRTEG F+EFTRANA
Sbjct: 1161 PTLEEKNMTIDFDLDTDTIVGKSIVGHTFKEWWDVQLNTNRIVPHYRTEGHFMEFTRANA 1220

Query: 5720 MIVANEIAHSDQTDFLVMGAVGSGKSTGLPFHLSRKGKVLMIEPTKPLAENVHKQLKGNP 5541
              +A++I+H   TD ++ GAVGSGKSTGLP+HLS+KG VL++EPT+PLAENV KQLK +P
Sbjct: 1221 PTIAHQISHDLHTDIMLRGAVGSGKSTGLPYHLSKKGTVLLLEPTRPLAENVTKQLKSDP 1280

Query: 5540 FMSNATLRMRGCSVFGSSPITVMTSGYALHYFAHNIAQLAEYQFVIIDECHVHDASAMAF 5361
            F  + TLRMRG +VFGS+PI VMT+G+ALHY A+N+  L+ Y F+IIDE HVHD++A+A 
Sbjct: 1281 FHVSPTLRMRGMAVFGSTPIHVMTTGFALHYLANNLRMLSTYDFIIIDEFHVHDSNAIAL 1340

Query: 5360 RCLLLEYDYQGKVLKVSATPPGREATFNTQHPVLVKMEESLSFQQFVALQGSGANGDITQ 5181
            R LL E++YQGK++KVSATPPGRE  F+TQHPV +++E+ +SFQ FV  QG+G+N D+  
Sbjct: 1341 RNLLHEHNYQGKLIKVSATPPGREVEFSTQHPVEIRVEDQVSFQDFVKAQGNGSNLDLIS 1400

Query: 5180 NGDNILIYVASYNEVDTLSKMLLDKNHKVTKVDGRTMKMGQVEIPTAGTKEKKHFIVATN 5001
              DN+L+YVASYNEVD LSK+LL+++  VTKVDGR+MK+GQVEI T G   +KHFIVATN
Sbjct: 1401 KCDNLLVYVASYNEVDQLSKLLLERHFLVTKVDGRSMKLGQVEIITKGNAARKHFIVATN 1460

Query: 5000 IIENGVTLDIDVVVDFGMKVVPELDIDNRLIRYSKVAISYGERIQRLGRVGRNKEGVALR 4821
            IIENGVTLDID V+DFGMKVVP LD DNR+I Y+KV+ISYGERIQRLGRVGRNK GVALR
Sbjct: 1461 IIENGVTLDIDAVIDFGMKVVPFLDSDNRMISYNKVSISYGERIQRLGRVGRNKAGVALR 1520

Query: 4820 IGVTEKGLSAVPNVTATEAAFYCFAYGLPVMTSGVAVSMLSNCTVNQARTMMHFELPLFY 4641
            IG TEKG+S VP V AT+AAF CF YGLP+ T  V   +LSN T+ QARTM+ FELP+FY
Sbjct: 1521 IGHTEKGISDVPVVVATQAAFLCFVYGLPISTQSVTTQVLSNVTLKQARTMVQFELPIFY 1580

Query: 4640 MVHMVRFDGSMHPELHKCLKDYKLRDSEIILNKMAIPSSGVKSWMTAGEYSRLGARNSIE 4461
            M H+VR+DG+MHP +H  LK YKLRDSEI L K+AIPS  V  WMT   Y  L   + I 
Sbjct: 1581 MAHLVRYDGTMHPAIHNELKKYKLRDSEIQLCKLAIPSKCVPIWMTGKAYRLLTHNSQIP 1640

Query: 4460 EFVRIPFYARDIPDKVHERVWEVVVTFKRDAGFGKIQSASACKVAYTLQTDAASIPRTIC 4281
            + VR+PF  +D+PDK+HE +W +V  FK DAG G++ SA A KVAYTL+TD  S+ RTI 
Sbjct: 1641 DDVRVPFLTKDVPDKLHESIWGIVEKFKCDAGIGRMTSAQASKVAYTLETDIHSVQRTIL 1700

Query: 4280 IIEELIKNEVKKQEYFQVASGVDCGSG-FSLINITNALRSRHMSNHTAENIAILEAAKNQ 4104
            II++L++ E++KQ +F++ +   C SG  SL  + NA++SR+  NHTA NI IL+ AK Q
Sbjct: 1701 IIDQLLEREMQKQSHFEMVTNQSCSSGMLSLQTMMNAIQSRYAKNHTAGNIEILQKAKAQ 1760

Query: 4103 IYEFRNLGIDPSSKTVC-DFGALECVQFQSAEGVSKQLKLKGHWNKSLITKDLLVAGFTL 3927
            + EF NL  D S+++   +FG LE VQFQS   V+  L L+GHW KSLITKDLL+ G   
Sbjct: 1761 LLEFSNLSGDVSTESALREFGYLEAVQFQSKTQVANFLGLEGHWKKSLITKDLLIVGGVC 1820

Query: 3926 FGGLWMLYNHFKRAATTLVEFQASGKRQSQKRRFQIARNHKHAYEVNPDQTDVEHYFGEA 3747
             G  WM+  +F R +  +V FQ   KRQ QK +F  AR+ K  + V    + +EHYFG A
Sbjct: 1821 VGAAWMIGEYFFRKSKEVVSFQGYNKRQRQKLKFARARDEKMGHYVEAPDSTLEHYFGSA 1880

Query: 3746 YAKKPQQKGRTKGMGAKSRRFYNIYGFDPAEYTFARYVDPLTGYTLDENALTDARLVQEH 3567
            Y KK + KG+T GMG K+ RF N+YGFDP++YTF RYVDPLTGYTLDE+  TD RLVQ  
Sbjct: 1881 YTKKGKTKGKTHGMGKKNHRFVNMYGFDPSDYTFIRYVDPLTGYTLDESPYTDIRLVQSQ 1940

Query: 3566 FGKIRLELREQDKLDAQALMANQKIEAYFVKDLAKQILKIDMTPHRPLELGCKTSTIAGY 3387
            FG  R E    D+L+   +     I+ Y VKD   QILKID+TPH PL++   T+ IAG+
Sbjct: 1941 FGAFREEQILNDELERSLIHHRPGIQGYLVKDKTSQILKIDLTPHIPLKVCDTTNNIAGH 2000

Query: 3386 PEREGELRQAAPHVIVDASVLPKQNEYTSEGAEFESKATYQGLRDYNSISSSICLLENDS 3207
            PEREGELRQ     ++  + LP++ E      EFES +  +G+RDYN ISS IC LEN+S
Sbjct: 2001 PEREGELRQTGKGQLLQYAELPQKKEI----VEFESTSMSRGVRDYNPISSVICQLENES 2056

Query: 3206 DGYTMKIHGIGFGSMIITNQHLFKRNNGSLKIQSHRGEFLVPNTTQLKMYPFEGRDLLLI 3027
            +G T ++ GIGFG  I+TNQHLF RNNGSL ++S  G F V +TT L+M P EGRD+L+I
Sbjct: 2057 EGRTTQLFGIGFGPFIVTNQHLFVRNNGSLTVRSQMGVFKVNSTTTLQMRPVEGRDVLII 2116

Query: 3026 QMPKDFPPFPQKLKFRLPVSGERVCLIGSNFQEKYISSTVSESSVIAQKDNTSFFRHWIT 2847
            +MPKDFPPFPQ+LKFR P   E+VCLI +NFQ+K  SS VSE+S I  K+NT F++HWI+
Sbjct: 2117 KMPKDFPPFPQRLKFRQPTHSEKVCLILTNFQQKSSSSMVSETSHIIPKENTYFWKHWIS 2176

Query: 2846 TQKGHCGLPLVSVKDGHILGIHSMTSLEDSSSFFISLPPDIGPKYLQNEENIEWTKKWRL 2667
            T++GHCG P+VS  DG ILGIHS++++ ++S++F   P      YL NE   EW K W+ 
Sbjct: 2177 TKEGHCGSPIVSTTDGAILGIHSLSNMTNTSNYFACFPKGFTETYLANESAHEWVKGWKF 2236

Query: 2666 NLELINWGAFKLSNEKPDNLFKLSKDIFELLDEPVDFQAKEGGWLYDRLGGNITAMARTS 2487
            N   + WG+F L + KP   FK  K + +LL+E V  Q  +  WLY+    NI A+A+  
Sbjct: 2237 NANNVCWGSFHLQDSKPTKEFKTVKLVTDLLEEAVYTQGFDSKWLYNAAHTNIQAVAQLD 2296

Query: 2486 NQLVTKHVVKGQCLLFQTYLETHPEASNFFKPLMGFYQKSRLNKEAYIKDLFKYNAPTTV 2307
            + LVTKH VKG+C LF+TYL     A +FF   MGFY+ S+LN+EAY KDL KY+    V
Sbjct: 2297 SNLVTKHTVKGKCKLFETYLNVDKVAHDFFSKYMGFYKPSKLNREAYTKDLMKYSKVIQV 2356

Query: 2306 GVLNPHVFELAEESVYNMFVGIGFQKCVYVTDQEAIFSALNMKAATGALYQGKKKEYFEN 2127
            G ++  VFE A   + +     GF    Y TD+E+I++ALNMKAA GALY+GKK++YF+ 
Sbjct: 2357 GEVDCEVFESALTGLLHNLKRWGFTTACYTTDEESIYAALNMKAAVGALYKGKKRDYFDA 2416

Query: 2126 FTEADKAQILKDSCFRLYTGKLGVWNGSLKAELRPLEKVQANKTRSFTAAPIDTLLGGKV 1947
             + ++K  +L  SC RLYTG+LGVWNGSLKAELRP EKV  NKTR+FTAAPI+TLLGGKV
Sbjct: 2417 MSPSEKEHLLFLSCKRLYTGQLGVWNGSLKAELRPNEKVDLNKTRTFTAAPIETLLGGKV 2476

Query: 1946 CVDDFNNQFYSLNLKAPWSVGMTKFYGGWNTLIRSLPEGWIYCDADGSQFDSSLTPYLIN 1767
            CVDDFNN FYSL+LKAPWSVGMTKFYG WN L+  LPEGW+YCDADGSQFDSS++PY+IN
Sbjct: 2477 CVDDFNNMFYSLHLKAPWSVGMTKFYGTWNQLMCKLPEGWVYCDADGSQFDSSISPYMIN 2536

Query: 1766 AVLNLRLRFMEDWDVGTQMLENLYTEIVYTPIATPDGTIVKKYKGNNSGQPSTVVDNTIM 1587
            AVL +RL FME+WD+G+QML++LYTEIVYTPI+TPDGT+VKK+KGNNSGQPSTVVDNT++
Sbjct: 2537 AVLRIRLHFMEEWDIGSQMLQHLYTEIVYTPISTPDGTVVKKFKGNNSGQPSTVVDNTLL 2596

Query: 1586 VILAMHYASGLYNSDVAITEY---CVFFVNGDDLIIAVHPDHQAFLDGLKESFTHLGLKY 1416
            V+LAMHYA  L  S V + E+   CV+ VNGDDL+IA+ PD +  LDG +  F+ LGL Y
Sbjct: 2597 VVLAMHYA--LLKSGVPLEEHDSVCVYCVNGDDLLIAIRPDMEPKLDGFQALFSELGLNY 2654

Query: 1415 DFSNRCQSREDLWFMSHKAILSGDIYIPKLEEERIVSILEWDRAILPEHRLEAICASMIE 1236
            +F++R + ++DLWFMSHKAI   DI IPKLEEERIVSILEWDR+  P HRLEAICASMIE
Sbjct: 2655 EFNSRSKDKKDLWFMSHKAIQCDDILIPKLEEERIVSILEWDRSHEPVHRLEAICASMIE 2714

Query: 1235 AWGYPDLLYQIRRFYYWVLEQAPYNHLSQTGKAPYISEAALKNLYTN-QSSPSELQRYVD 1059
            +WGYP+L ++IRRFY WVLEQ+PYN L+ TG APYI+E+ALK LYTN   + +EL++Y  
Sbjct: 2715 SWGYPELTHEIRRFYAWVLEQSPYNALAATGLAPYIAESALKTLYTNVHPTSTELEKY-- 2772

Query: 1058 SLEWNNLTGEE--AVEFQGTEDESLNAGDQTKKTSEAKGKDNK-EKALETRPKDKDVDVG 888
            SL+      EE   V FQ     +L+AG+ T + +E K K+ +         KDKDVD+G
Sbjct: 2773 SLQLTEQVDEEDDIVYFQA---GTLDAGEATAQKAEGKKKEGEVSSGQAVAVKDKDVDLG 2829

Query: 887  TSGIYQVPKLKAIGTKFCLPKVKGRTIVNLDHLISYEPEQINLSNARATQSQFAQWYNGV 708
            T+G + VP+LK++ +K  LP +KG+++VNLDHL+SY+P+Q++LSNARAT  QF  WY+GV
Sbjct: 2830 TAGTHSVPRLKSMTSKLTLPMLKGKSVVNLDHLLSYKPKQVDLSNARATHEQFQNWYDGV 2889

Query: 707  KDAYELDDNSMGIVMSGLMVWCIENGTSPNINGQWTMMDGDEQVEYPLKPVVENAQPSLR 528
              +YEL+++SM I+++G MVWCIENGTSP+ING WTMMD +EQ+ YPLKP++++A+PSLR
Sbjct: 2890 MASYELEESSMEIILNGFMVWCIENGTSPDINGVWTMMDDEEQISYPLKPMLDHAKPSLR 2949

Query: 527  QIMAHFSALAEAYIEKRNATKPYMPRYGLLRNLRDSSLARYAFDFYEVTSRTPPRAREAH 348
            QIM HFSALAEAYIE R+  KPYMPRYGL RNLRD SLARYAFDFYE+T+ TP RA+EAH
Sbjct: 2950 QIMRHFSALAEAYIEMRSREKPYMPRYGLQRNLRDQSLARYAFDFYEITATTPVRAKEAH 3009

Query: 347  LQMKAAAIRNSSTKMFGLDGNAGDKEEDTERHTANDVSKNMHSLMGVR 204
            LQMKAAA++NS+T MFGLDGN    EEDTERHTA DV++NMH L+GV+
Sbjct: 3010 LQMKAAALKNSNTNMFGLDGNVTTSEEDTERHTATDVNRNMHHLLGVK 3057


>gb|AKI32469.1| polyprotein [Potato virus A]
          Length = 3059

 Score = 3002 bits (7783), Expect = 0.0
 Identities = 1519/2925 (51%), Positives = 2023/2925 (69%), Gaps = 13/2925 (0%)
 Frame = -1

Query: 8939 VHYDWLNLVRAVANIQKRTGVVIELISNRRKVTANRLLKDNKRYV-RVVTKHELGYRHKC 8763
            V Y    L R + N+ KRTG+ +E++    K T  R  K    ++ RV  KH  G  H+ 
Sbjct: 156  VPYSVQQLCRTLGNLSKRTGITLEIVGKNPKATKLRFTKTVFGHMARVQLKHHNGMMHRR 215

Query: 8762 DVRTGQWDRIVLKQLVEKSSGRLKHRADEFTPGSSGIALLSDKIDGQVSTSRGGVFIIRG 8583
            D+   +    +++ L  K++ +     D  T GSSG+   +  + GQ   +R    ++RG
Sbjct: 216  DLVVDRSTTAIMQTLFSKTA-KTSANLDVLTHGSSGLVFWNYVVSGQRMRTRDNFIVVRG 274

Query: 8582 RDGSKLYDSQCVVTTHVAARMHHYSVSERFWKGYDRGFQMARGPT--DHTCDSNLDVEEC 8409
            R    L D++  ++       HHYS  + FW+G+++ F +   P   DH C S+  VEEC
Sbjct: 275  RCNGILVDARAKLSESTMLATHHYSTGDVFWRGFNKTF-LENKPINLDHVCSSDFSVEEC 333

Query: 8408 GLVAAIATQALFPCGKITCQQCVDKFTSSGKSELREEHSARLEELIGRIQKNHPKFKHVI 8229
            G +AA+  Q+L PCGKITC+ C  K  S  +   +E  + R  E+   I   HP F  V 
Sbjct: 334  GSIAALIYQSLLPCGKITCRTCAAKNLSMDEDTFKEFQTQRAREMSAIILSKHPNFACVS 393

Query: 8228 QXXXXXXXXXXXXXXNVDQFSEVNRMIGERQETPFKQLADLNNLMIKIGSCTSEEVALGT 8049
            Q              NV+ + E+ +++G   + P+  L +LN +++  G  T E+++  +
Sbjct: 394  QFIERYFSHQRVLNPNVNAYREILKIVGGFTQAPYIHLQELNEILVLGGRATPEQLSSAS 453

Query: 8048 AKILEIVRFQRNRTDNIAKGSLAHFRNKVSSKVHVNLDLMCDNQLDDDGNFRWRQRAYHA 7869
            A +LEI RF RNRTDNI KGSLA FRNK+S+K HVN  LMCDNQLD +GN  W +R YHA
Sbjct: 454  AHLLEITRFVRNRTDNIKKGSLALFRNKISAKAHVNTALMCDNQLDKNGNLIWGERGYHA 513

Query: 7868 KRLFSNFFDVIDPANGYDQFIKRKNPNGMRKTAIGNLIVSTNMQTFRQQMRGEPMESVPL 7689
            KR FSN+FD+I P  GY Q+I+R+ PNG+RK AIGNLIV+TN++  R+Q+ GEP+E   +
Sbjct: 514  KRFFSNYFDIITPGGGYKQYIERRVPNGVRKLAIGNLIVTTNLEALREQLEGEPVEKKAI 573

Query: 7688 SNACTSRLKGGFVYPCCCVTTDEGTPIESDMMIPTKDHLVIGNTGDSKFVNMPRMVEG-M 7512
            + AC S     + YPCCCVT D+GTP+ S  ++PTK+HLVIGN+GD KF+++P  +   M
Sbjct: 574  TKACVSMSDNNYKYPCCCVTLDDGTPLYSAFIMPTKNHLVIGNSGDPKFLDLPTDISTQM 633

Query: 7511 YIAKQGYCYVNIFLAMLINVSDAQSKDYTKKVRDIVIPKLGEWPTLLDVATMCHFLTVFY 7332
            YIAK GYCY+NIFLAML+NV +  +KD+TKKVRDI++P LGEWPTL+DVAT C  L+ FY
Sbjct: 634  YIAKSGYCYINIFLAMLVNVDEPDAKDFTKKVRDIIVPDLGEWPTLIDVATSCSLLSAFY 693

Query: 7331 PDVKSAELPRILVDHRNQIMHVIDSFGSLTTGYHILKANTVGQLVKFSNDELQSEMMHYR 7152
            P   +AELPRILVDH  + MHVIDS+GSL TGYH+LKANTV QL++F+++ L SEM HYR
Sbjct: 694  PATSAAELPRILVDHDLKTMHVIDSYGSLNTGYHVLKANTVRQLIQFASNSLDSEMKHYR 753

Query: 7151 VGGTMMSEESSEDAAVTLLARGVYRPTELKRVLEKDPLLLVYGLLSPRVLIAMHKSKTLE 6972
            VGGT  S+ +   + + +LA+ VYRP  ++ ++ + P +LV  L+SP VLIA+  S  LE
Sbjct: 754  VGGTSNSQINGY-STIKMLAKAVYRPKLMREIIHEQPYMLVMSLMSPGVLIALANSGALE 812

Query: 6971 MALDQWLHKDTSVANLCQMIDVLAKKVSVSKLFRTQQQIISENAMEIARCVDRCRTTSPS 6792
            M +  W+ +  S+  +  M+  LA+ VSV++    QQ+IIS++A ++   +     T P+
Sbjct: 813  MGIHHWIREGDSLVKMAHMLRTLAQNVSVARATWVQQEIISDSAQQMLEII--LNGTIPN 870

Query: 6791 RTFVQLV--LTRLVESRNTSKELLSAGFQTLMYEGEEMREKKFSEVLAHSWRDLNWSQRC 6618
             ++ Q +  LT L  S+    E+   G+ T   +  E+ EK +  +L  SW++L++  R 
Sbjct: 871  ISYFQAIQYLTMLAASKEADAEVRVTGYYTFKLQTSELLEKTYLSLLEDSWQELSYFGRF 930

Query: 6617 SAIWHSRKASQHATNSSIEPEQTDSGETWTERFICLRGKLTSHVKVWTTSALSNGKRKAY 6438
             AI HSRK     T      +  D G  +   +     K   + K     A++  + + +
Sbjct: 931  QAIRHSRKFCTTGTIVVKPEKHVDLGGIYATSYQFALAKQMEYSKKAVYQAVNGLQVRFH 990

Query: 6437 ETCGKVVCKLITSTKFFCPDIIKMVNVLSVFCLLLQISTVVNRHLLQYRILKEEQQNMRD 6258
                KV CK++   K   PD++K +N +    + LQ+       L  ++  K++   +  
Sbjct: 991  NITSKVYCKILNWPKRLFPDLVKFINTMLAITVALQLYIAFATILRHHQQCKQDSLELEY 1050

Query: 6257 DKDFETMMGIYNLYVKTYEGEYPTLKQFSTYLQKVNPQIYAYYERTMGEPDDTDECVELQ 6078
             K  + ++ +Y+ ++  +   + T ++F T++   NP +  +      E       V  Q
Sbjct: 1051 RKKEKQLITLYDFFIAKHP--HATEEEFITHVDDQNPDLSTFVREYCAE------VVLFQ 1102

Query: 6077 AKGKGEIELERTIAFVALIMMMFDAERSDCVYKVLNKLRGIMNPISAETVAFQGLDDMKE 5898
            AK   ++  ER IAF++L++MMFD+ERSDCVY+ L KL+ +M+ +   TV FQ LDD+  
Sbjct: 1103 AKASEQVNFERIIAFISLVLMMFDSERSDCVYRSLTKLKSLMSTVE-NTVQFQSLDDIGP 1161

Query: 5897 LLGETKMAIDIELDTENHQLNRLGGVTFGDWWTHQLNQNRTVPHYRTEGKFVEFTRANAM 5718
             L E  M ID +LDT+      + G TF +WW  QLN NR VPHYRTEG F+EFTRANA 
Sbjct: 1162 TLEEKNMTIDFDLDTDTIVGKSIVGHTFKEWWDAQLNTNRIVPHYRTEGHFMEFTRANAP 1221

Query: 5717 IVANEIAHSDQTDFLVMGAVGSGKSTGLPFHLSRKGKVLMIEPTKPLAENVHKQLKGNPF 5538
             +A++I+H   TD ++ GAVGSGKSTGLP+HLS+KG VL++EPT+PLAENV KQLK +PF
Sbjct: 1222 TIAHQISHDLHTDIMLRGAVGSGKSTGLPYHLSKKGTVLLLEPTRPLAENVTKQLKSDPF 1281

Query: 5537 MSNATLRMRGCSVFGSSPITVMTSGYALHYFAHNIAQLAEYQFVIIDECHVHDASAMAFR 5358
              + TLRMRG +VFGS+PI VMT+G+ALHY A+N+  L+ Y F+IIDE HVHD++A+A R
Sbjct: 1282 HVSPTLRMRGMAVFGSTPIHVMTTGFALHYLANNLKMLSTYDFIIIDEFHVHDSNAIALR 1341

Query: 5357 CLLLEYDYQGKVLKVSATPPGREATFNTQHPVLVKMEESLSFQQFVALQGSGANGDITQN 5178
             LL E++YQGK++KVSATPPGRE  F+TQHPV +++E+ +SFQ FV  QG+G+N D+   
Sbjct: 1342 NLLHEHNYQGKLIKVSATPPGREVEFSTQHPVEIRVEDQVSFQDFVKAQGNGSNLDLISK 1401

Query: 5177 GDNILIYVASYNEVDTLSKMLLDKNHKVTKVDGRTMKMGQVEIPTAGTKEKKHFIVATNI 4998
             DN+L+YVASYNEVD LSK+LL+++  VTKVDGR+MK+GQVEI T G   +KHFIVATNI
Sbjct: 1402 CDNLLVYVASYNEVDQLSKLLLERHFLVTKVDGRSMKLGQVEIITKGNAARKHFIVATNI 1461

Query: 4997 IENGVTLDIDVVVDFGMKVVPELDIDNRLIRYSKVAISYGERIQRLGRVGRNKEGVALRI 4818
            IENGVTLDID V+DFGMKVVP LD DNR+I Y+KV+ISYGERIQRLGRVGRNK GVALRI
Sbjct: 1462 IENGVTLDIDAVIDFGMKVVPFLDSDNRMISYNKVSISYGERIQRLGRVGRNKAGVALRI 1521

Query: 4817 GVTEKGLSAVPNVTATEAAFYCFAYGLPVMTSGVAVSMLSNCTVNQARTMMHFELPLFYM 4638
            G TEKG+S VP V AT+AAF CF YGLP+ T  V   +LSN T+ QARTM+ FELP+FYM
Sbjct: 1522 GHTEKGISDVPVVVATQAAFLCFVYGLPISTQSVTTQVLSNVTLKQARTMVQFELPIFYM 1581

Query: 4637 VHMVRFDGSMHPELHKCLKDYKLRDSEIILNKMAIPSSGVKSWMTAGEYSRLGARNSIEE 4458
             H+VR+DG+MHP +H  LK YKLRDSEI L K+AIPS  V  WMT   Y  L   + I +
Sbjct: 1582 AHLVRYDGTMHPAIHNELKKYKLRDSEIQLCKLAIPSKCVPIWMTGKAYRLLTHNSQIPD 1641

Query: 4457 FVRIPFYARDIPDKVHERVWEVVVTFKRDAGFGKIQSASACKVAYTLQTDAASIPRTICI 4278
             VR+PF  +D+PDK+HE +W +V  FK DAG G++ SA A KVAYTL+TD  S+ RTI I
Sbjct: 1642 DVRVPFLTKDVPDKLHESIWGIVEKFKCDAGIGRMTSAQASKVAYTLETDIHSVQRTILI 1701

Query: 4277 IEELIKNEVKKQEYFQVASGVDCGSG-FSLINITNALRSRHMSNHTAENIAILEAAKNQI 4101
            I++L++ E++KQ +F++ +   C SG  SL  + NA++SR+  NHTA NI IL+ AK Q+
Sbjct: 1702 IDQLLEREMQKQSHFEMVTNQSCSSGMLSLQTMMNAIQSRYAKNHTAGNIEILQKAKAQL 1761

Query: 4100 YEFRNLGIDPSSKTVC-DFGALECVQFQSAEGVSKQLKLKGHWNKSLITKDLLVAGFTLF 3924
             EF NL  D S+++   +FG LE VQFQS   V+  L L+GHW KSLITKDLL+ G    
Sbjct: 1762 LEFSNLSGDVSTESALREFGYLEAVQFQSKMQVANFLGLEGHWKKSLITKDLLIVGGVCV 1821

Query: 3923 GGLWMLYNHFKRAATTLVEFQASGKRQSQKRRFQIARNHKHAYEVNPDQTDVEHYFGEAY 3744
            G  WM+  +F R +  ++ FQ   KRQ QK +F  AR+ K  + V    + +EHYFG AY
Sbjct: 1822 GAAWMIGEYFFRKSKEVISFQGYNKRQRQKLKFARARDEKMGHYVEAPDSTLEHYFGSAY 1881

Query: 3743 AKKPQQKGRTKGMGAKSRRFYNIYGFDPAEYTFARYVDPLTGYTLDENALTDARLVQEHF 3564
             KK + KG+T GMG K+ RF N+YGFDP++YTF RYVDPLTGYTLDE+  TD RLVQ  F
Sbjct: 1882 TKKGKTKGKTHGMGKKNHRFVNMYGFDPSDYTFIRYVDPLTGYTLDESPYTDIRLVQSQF 1941

Query: 3563 GKIRLELREQDKLDAQALMANQKIEAYFVKDLAKQILKIDMTPHRPLELGCKTSTIAGYP 3384
            G  R E    D+L+   +     I+ Y VKD   QILKID+TPH PL++   T+ IAG+P
Sbjct: 1942 GAFRDEQILNDELERSLIHHRPGIQGYLVKDKTSQILKIDLTPHIPLKVCDTTNNIAGHP 2001

Query: 3383 EREGELRQAAPHVIVDASVLPKQNEYTSEGAEFESKATYQGLRDYNSISSSICLLENDSD 3204
            EREGELRQ     +++ + LP++ E      EFES +  +G+RDYN ISS IC LEN+S+
Sbjct: 2002 EREGELRQTGKGQLLEYAELPQKKEI----VEFESTSMSRGVRDYNPISSVICQLENESE 2057

Query: 3203 GYTMKIHGIGFGSMIITNQHLFKRNNGSLKIQSHRGEFLVPNTTQLKMYPFEGRDLLLIQ 3024
            G T ++ GIGFG  I+TNQHLF RNNGSL ++S  G F V +TT L+M P EGRD+L+I+
Sbjct: 2058 GRTTQLFGIGFGPFIVTNQHLFVRNNGSLTVRSQMGVFKVNSTTTLQMRPVEGRDVLIIK 2117

Query: 3023 MPKDFPPFPQKLKFRLPVSGERVCLIGSNFQEKYISSTVSESSVIAQKDNTSFFRHWITT 2844
            MPKDFPPFPQ+LKFR P   E+VCLI +NFQ+K  SS VSE+S I  K+NT F++HWI+T
Sbjct: 2118 MPKDFPPFPQRLKFRQPTHSEKVCLILTNFQQKSSSSMVSETSHIIPKENTYFWKHWIST 2177

Query: 2843 QKGHCGLPLVSVKDGHILGIHSMTSLEDSSSFFISLPPDIGPKYLQNEENIEWTKKWRLN 2664
            ++GHCG P+VS  DG ILGIHS++++ ++S++F   P      YL NE   EW K W+ N
Sbjct: 2178 KEGHCGSPIVSTTDGAILGIHSLSNMTNTSNYFACFPKGFTETYLVNESAHEWVKGWKFN 2237

Query: 2663 LELINWGAFKLSNEKPDNLFKLSKDIFELLDEPVDFQAKEGGWLYDRLGGNITAMARTSN 2484
               + WG+F L + KP   FK  K + +LL+E V  Q  +  WLY+    NI A+A+  +
Sbjct: 2238 ANNVCWGSFHLQDSKPTKEFKTVKLVTDLLEEAVYTQGFDSKWLYNAAHTNIQAVAQLDS 2297

Query: 2483 QLVTKHVVKGQCLLFQTYLETHPEASNFFKPLMGFYQKSRLNKEAYIKDLFKYNAPTTVG 2304
             LVTKH VKG+C LF+TYL     A +FF   MGFY+ S+LN+EAY KDL KY+    VG
Sbjct: 2298 NLVTKHTVKGKCKLFETYLNVDKVAHDFFSKYMGFYKPSKLNREAYTKDLMKYSKVIQVG 2357

Query: 2303 VLNPHVFELAEESVYNMFVGIGFQKCVYVTDQEAIFSALNMKAATGALYQGKKKEYFENF 2124
             ++  VFE A   + +     GF    Y TD+E+I++ALNMKAA GALY+GKK++YF+  
Sbjct: 2358 EVDCEVFESALTGLLHNLKRWGFTTACYTTDEESIYAALNMKAAVGALYRGKKRDYFDAM 2417

Query: 2123 TEADKAQILKDSCFRLYTGKLGVWNGSLKAELRPLEKVQANKTRSFTAAPIDTLLGGKVC 1944
            + ++K  +L  SC RLYTG+LGVWNGSLKAELRP EKV  NKTR+FTAAPI+TLLGGKVC
Sbjct: 2418 SPSEKEHLLFLSCKRLYTGQLGVWNGSLKAELRPNEKVDLNKTRTFTAAPIETLLGGKVC 2477

Query: 1943 VDDFNNQFYSLNLKAPWSVGMTKFYGGWNTLIRSLPEGWIYCDADGSQFDSSLTPYLINA 1764
            VDDFNN FYSL+LKAPWSVGMTKFYG WN L+  LPEGW+YCDADGSQFDSS++PY+INA
Sbjct: 2478 VDDFNNMFYSLHLKAPWSVGMTKFYGTWNQLMCKLPEGWVYCDADGSQFDSSISPYMINA 2537

Query: 1763 VLNLRLRFMEDWDVGTQMLENLYTEIVYTPIATPDGTIVKKYKGNNSGQPSTVVDNTIMV 1584
            VL +RL FME+WD+G+QML++LYTEIVYTPI+TPDGT+VKK+KGNNSGQPSTVVDNT++V
Sbjct: 2538 VLRIRLHFMEEWDIGSQMLQHLYTEIVYTPISTPDGTVVKKFKGNNSGQPSTVVDNTLLV 2597

Query: 1583 ILAMHYASGLYNSDVAITEY---CVFFVNGDDLIIAVHPDHQAFLDGLKESFTHLGLKYD 1413
            +LAMHYA  L  S V + E+   CV+ VNGDDL+IA+ PD +  LDG +  F+ LGL Y+
Sbjct: 2598 VLAMHYA--LLKSGVPLEEHDSVCVYCVNGDDLLIAIRPDMEPKLDGFQALFSELGLNYE 2655

Query: 1412 FSNRCQSREDLWFMSHKAILSGDIYIPKLEEERIVSILEWDRAILPEHRLEAICASMIEA 1233
            F++R + + DLWFMSHKAI   DI IPKLEEERIVSILEWDR+  P HRLEAICASM+E+
Sbjct: 2656 FNSRSKDKRDLWFMSHKAIQCDDILIPKLEEERIVSILEWDRSHEPVHRLEAICASMVES 2715

Query: 1232 WGYPDLLYQIRRFYYWVLEQAPYNHLSQTGKAPYISEAALKNLYTN-QSSPSELQRYVDS 1056
            WGYP+L ++IRRFY WVLEQ+PYN L+ TG APYI+E+ALK LYTN   + +EL++Y   
Sbjct: 2716 WGYPELTHEIRRFYAWVLEQSPYNALAATGLAPYIAESALKTLYTNVHPTSTELEKYSLQ 2775

Query: 1055 LEWNNLTGEEAVEFQGTEDESLNAGDQTKKTSEAKGKDNK-EKALETRPKDKDVDVGTSG 879
            L       ++ V FQ     +L+AG+ T + +E K K+ +         KDKDVD+GT+G
Sbjct: 2776 LIEQVDEEDDIVYFQA---GTLDAGEATAQKAEGKKKEGEVSSGKAVAVKDKDVDLGTAG 2832

Query: 878  IYQVPKLKAIGTKFCLPKVKGRTIVNLDHLISYEPEQINLSNARATQSQFAQWYNGVKDA 699
             + VP+LK++ +K  LP +KG+++VNLDHL+SY+P+Q++LSNARAT  QF  WY+GV  +
Sbjct: 2833 THSVPRLKSMTSKLTLPMLKGKSVVNLDHLLSYKPKQVDLSNARATHEQFQNWYDGVMAS 2892

Query: 698  YELDDNSMGIVMSGLMVWCIENGTSPNINGQWTMMDGDEQVEYPLKPVVENAQPSLRQIM 519
            YEL+++SM I+++G MVWCIENGTSP+ING WTMMD +EQ+ YPLKP++++A+PSLRQIM
Sbjct: 2893 YELEESSMEIILNGFMVWCIENGTSPDINGVWTMMDDEEQISYPLKPMLDHAKPSLRQIM 2952

Query: 518  AHFSALAEAYIEKRNATKPYMPRYGLLRNLRDSSLARYAFDFYEVTSRTPPRAREAHLQM 339
             HFSALAEAYIE R+  KPYMPRYGL RNLRD SLARYAFDFYE+T+ TP RA+EAHLQM
Sbjct: 2953 RHFSALAEAYIEMRSREKPYMPRYGLQRNLRDQSLARYAFDFYEITATTPVRAKEAHLQM 3012

Query: 338  KAAAIRNSSTKMFGLDGNAGDKEEDTERHTANDVSKNMHSLMGVR 204
            KAAA++NS+T MFGLDGN    EEDTERHTA DV++NMH L+GV+
Sbjct: 3013 KAAALKNSNTNMFGLDGNVTTSEEDTERHTATDVNRNMHHLLGVK 3057


>gb|ADA57721.1| polyprotein [Potato virus A]
          Length = 3059

 Score = 2988 bits (7746), Expect = 0.0
 Identities = 1516/2928 (51%), Positives = 2032/2928 (69%), Gaps = 18/2928 (0%)
 Frame = -1

Query: 8933 YDWLNLVRAVANIQKRTGVVIELISNRRKVTANRLLKDNKRYV-RVVTKHELGYRHKCDV 8757
            Y    L R + N+ KRTG+ +E++    K T  R  K +  Y+ RV  KH  G  H+ D+
Sbjct: 158  YSVQQLCRTLGNLSKRTGISLEVVGKTSKATKLRFTKTSFGYMARVQLKHHDGRMHRRDL 217

Query: 8756 RTGQWDRIVLKQLVEKSSGRLKHRADEFTPGSSGIALLSDKIDGQVSTSRGGVFIIRGRD 8577
                    +++ L  K++ R     D  T GSSG+   +  + GQ   +R    I+RGR 
Sbjct: 218  XVDTSTTTIMQTLFLKTA-RTNANLDVLTHGSSGLVFWNYLVTGQRMRTRDNFIIVRGRC 276

Query: 8576 GSKLYDSQCVVTTHVAARMHHYSVSERFWKGYDRGFQMARGPT--DHTCDSNLDVEECGL 8403
               L D++  ++       HHYS  + FW+G++R F +   P   DH C S+  VEECG 
Sbjct: 277  NGILVDARAKLSESTMLSTHHYSTGDVFWRGFNRTF-LENKPINLDHVCSSDFSVEECGS 335

Query: 8402 VAAIATQALFPCGKITCQQCVDKFTSSGKSELREEHSARLEELIGRIQKNHPKFKHVIQX 8223
            +AA+  Q+L PCGKITC+ C  K  +  +   +E  + R  E+   I   +P F  V Q 
Sbjct: 336  IAALICQSLLPCGKITCRACAAKNLNMDEDTFKEFQTQRAREISAVIISKYPNFACVSQF 395

Query: 8222 XXXXXXXXXXXXXNVDQFSEVNRMIGERQETPFKQLADLNNLMIKIGSCTSEEVALGTAK 8043
                         NV+ + E+ +++G   ++P+  + +LN +++  G  T E++   +A 
Sbjct: 396  IDRYFSHQRVLNPNVNAYREILKIVGGFTQSPYTHIQELNEILVLGGRATPEQLGSASAH 455

Query: 8042 ILEIVRFQRNRTDNIAKGSLAHFRNKVSSKVHVNLDLMCDNQLDDDGNFRWRQRAYHAKR 7863
            +LEI RF RNRTDNI KGSLA FRNK+S+K HVN  LMCDNQLD +GN  W +R YHAKR
Sbjct: 456  LLEITRFVRNRTDNIKKGSLALFRNKISAKAHVNTALMCDNQLDRNGNLIWGERGYHAKR 515

Query: 7862 LFSNFFDVIDPANGYDQFIKRKNPNGMRKTAIGNLIVSTNMQTFRQQMRGEPMESVPLSN 7683
             FSN+FD+I P  GY Q+I+RK PNG+RK AIGNLIV+TN++  R+Q+ GE +E   ++ 
Sbjct: 516  FFSNYFDIITPGGGYKQYIERKVPNGIRKLAIGNLIVTTNLEALREQLEGESIEKKAVTK 575

Query: 7682 ACTSRLKGGFVYPCCCVTTDEGTPIESDMMIPTKDHLVIGNTGDSKFVNMPRMVEG-MYI 7506
            AC S     + YPCCCVT D+GTP+ S  ++PTK+HLVIGN+GD KF+++P  +   +YI
Sbjct: 576  ACVSMSDNNYKYPCCCVTLDDGTPLYSTFIMPTKNHLVIGNSGDPKFLDLPTDISTQLYI 635

Query: 7505 AKQGYCYVNIFLAMLINVSDAQSKDYTKKVRDIVIPKLGEWPTLLDVATMCHFLTVFYPD 7326
            AK GYCY+NIFLAML+NV ++ +KD+TKKVRDI++P LGEWPTL+DVAT C  L+ FYP 
Sbjct: 636  AKSGYCYINIFLAMLVNVDESDAKDFTKKVRDIIVPDLGEWPTLIDVATSCSLLSAFYPA 695

Query: 7325 VKSAELPRILVDHRNQIMHVIDSFGSLTTGYHILKANTVGQLVKFSNDELQSEMMHYRVG 7146
              +AELPRILVDH  + MHVIDS+GSL TGYH+LKANTV QL++F+++ L SEM HYRVG
Sbjct: 696  TSAAELPRILVDHDLKTMHVIDSYGSLNTGYHVLKANTVRQLIQFASNSLDSEMKHYRVG 755

Query: 7145 GTMMSEESSEDAAVTLLARGVYRPTELKRVLEKDPLLLVYGLLSPRVLIAMHKSKTLEMA 6966
            GT  S+ +   A + +LA+ VYRP  +K ++ + P +LV  L+SP +LIA+  S  LEM 
Sbjct: 756  GTPNSQINGY-ATIKMLAKAVYRPKLMKEIIHEQPYMLVMSLMSPGILIALANSGALEMG 814

Query: 6965 LDQWLHKDTSVANLCQMIDVLAKKVSVSKLFRTQQQIISENAMEIARCVDRCRTTSPSRT 6786
            +  W+ +  S+  +  M+  +A+ VSV++    QQ+IIS++A ++   +     T P+ +
Sbjct: 815  IHHWIREGDSLVKMAHMLRTVAQNVSVARATWVQQEIISDSAQQMLETI--LNGTIPNVS 872

Query: 6785 FVQLV--LTRLVESRNTSKELLSAGFQTLMYEGEEMREKKFSEVLAHSWRDLNWSQRCSA 6612
            + Q +  LT L  S+    E+   G+ T   +  E+ EK +  +L  SW++L++  R  A
Sbjct: 873  YFQAIQYLTMLAASKEVDAEVRVTGYYTFKLQTSELLEKTYLSLLEDSWQELSYFGRFQA 932

Query: 6611 IWHSRKASQHATNSSIEPEQ-TDSGETWTERFICLRGKLTSHVKVWTTSALSNGKRKAYE 6435
            I HSR+     T   ++PE+  D G  +   +     K   + K     A++  + +   
Sbjct: 933  IRHSRRYCTAGT-IVVKPERHVDLGGIYATSYQFALAKQMEYSKKAVCQAVNGLQARFNN 991

Query: 6434 TCGKVVCKLITSTKFFCPDIIKMVNVLSVFCLLLQISTVVNRHLLQYRILKEEQQNMRDD 6255
               ++ CK++   K   PD++K +N +    + LQ+       L  ++  K++   +   
Sbjct: 992  ITSQIYCKILNWPKRLFPDLVKFINTMLAITVALQLYIAFATILRHHQQCKQDSLELEYC 1051

Query: 6254 KDFETMMGIYNLYVKTYEGEYPTLKQFSTYLQKVNPQIYAYYERTMGEPDDTDECVELQA 6075
            K    ++ +Y+ +  T +  Y T ++F  ++ + NP +  +      E       V  QA
Sbjct: 1052 KKERQLITLYDFF--TAKQPYATEEEFMAHVDEQNPDLSNFAREYCAE------VVLFQA 1103

Query: 6074 KGKGEIELERTIAFVALIMMMFDAERSDCVYKVLNKLRGIMNPISAETVAFQGLDDMKEL 5895
            K   ++  ER IAF++L++MMFD ERSDCVY+ L KL+ +M+ +   TV FQ LDD+   
Sbjct: 1104 KASEQVNFERIIAFISLVLMMFDCERSDCVYRSLTKLKSLMSTVE-NTVQFQSLDDIGPT 1162

Query: 5894 LGETKMAIDIELDTENHQLNRLGGVTFGDWWTHQLNQNRTVPHYRTEGKFVEFTRANAMI 5715
            L E  M ID +LDT+      + G TF +WW  QLN NR VPHYRTEG F+EFTRANA  
Sbjct: 1163 LEEKNMTIDFDLDTDTIVGKSIVGHTFKEWWDVQLNTNRIVPHYRTEGHFMEFTRANAPT 1222

Query: 5714 VANEIAHSDQTDFLVMGAVGSGKSTGLPFHLSRKGKVLMIEPTKPLAENVHKQLKGNPFM 5535
            +A++I+H   TD ++ GAVGSGKSTGLP+HLS+KG VL++EPT+PLAENV KQLK +PF 
Sbjct: 1223 IAHQISHDLHTDIMLRGAVGSGKSTGLPYHLSKKGTVLLLEPTRPLAENVTKQLKSDPFH 1282

Query: 5534 SNATLRMRGCSVFGSSPITVMTSGYALHYFAHNIAQLAEYQFVIIDECHVHDASAMAFRC 5355
             + TLRMRG +VFGS+PI VMT+G+ALHY A+N+  L+ Y F+IIDE HVHD++A+A R 
Sbjct: 1283 VSPTLRMRGMAVFGSTPIHVMTTGFALHYLANNLKMLSTYDFIIIDEFHVHDSNAIALRN 1342

Query: 5354 LLLEYDYQGKVLKVSATPPGREATFNTQHPVLVKMEESLSFQQFVALQGSGANGDITQNG 5175
            LL E++YQGK++KVSATPPGRE  F+TQ+PV +++E+ +SFQ FV  QG+G+N D+T   
Sbjct: 1343 LLHEHNYQGKLIKVSATPPGREVEFSTQYPVEIRVEDQVSFQDFVKAQGNGSNLDLTSKC 1402

Query: 5174 DNILIYVASYNEVDTLSKMLLDKNHKVTKVDGRTMKMGQVEIPTAGTKEKKHFIVATNII 4995
            DN+L+YVASYNEVD LSK+LL+++  VTKVDGR+MK+GQVEI T G+  KKHFIVATNII
Sbjct: 1403 DNLLVYVASYNEVDQLSKLLLERHFLVTKVDGRSMKLGQVEIITKGSANKKHFIVATNII 1462

Query: 4994 ENGVTLDIDVVVDFGMKVVPELDIDNRLIRYSKVAISYGERIQRLGRVGRNKEGVALRIG 4815
            ENGVTLDID V+DFGMKVVP LD DNR+I Y+KV+ISYGERIQRLGRVGRNK GVALRIG
Sbjct: 1463 ENGVTLDIDAVIDFGMKVVPFLDSDNRMISYNKVSISYGERIQRLGRVGRNKAGVALRIG 1522

Query: 4814 VTEKGLSAVPNVTATEAAFYCFAYGLPVMTSGVAVSMLSNCTVNQARTMMHFELPLFYMV 4635
             TEKG+S VP V AT+AAF CF YGLP+ T  V   +LSN T+ QARTM+ FELP+FYM 
Sbjct: 1523 HTEKGISDVPVVIATQAAFLCFVYGLPISTQSVTTQVLSNVTLKQARTMVQFELPIFYMA 1582

Query: 4634 HMVRFDGSMHPELHKCLKDYKLRDSEIILNKMAIPSSGVKSWMTAGEYSRLGARNSIEEF 4455
            H+VR+DG+MHP +H  LK YKLRDSEI L+K+AIPS  V  WMT   Y  L   + I + 
Sbjct: 1583 HLVRYDGTMHPAIHNELKKYKLRDSEIQLSKLAIPSKCVPIWMTGKAYRLLTHNSQIPDD 1642

Query: 4454 VRIPFYARDIPDKVHERVWEVVVTFKRDAGFGKIQSASACKVAYTLQTDAASIPRTICII 4275
            VR+PF  ++IPDK+HE VW +V  FK DAG G++ SA A KVAYTL+TD  SI RTI II
Sbjct: 1643 VRVPFLTKEIPDKLHENVWAIVEKFKCDAGIGRMTSAQASKVAYTLETDIHSIQRTILII 1702

Query: 4274 EELIKNEVKKQEYFQVASGVDCGSG-FSLINITNALRSRHMSNHTAENIAILEAAKNQIY 4098
            ++L++ E++KQ +F++ +   C SG  SL  + NA++SR+  NHTA NI IL+ AK Q+ 
Sbjct: 1703 DQLLEREMQKQSHFEMVTNQSCSSGMLSLQTMMNAIQSRYAKNHTAGNIEILQRAKAQLL 1762

Query: 4097 EFRNLGIDPSSKTVC-DFGALECVQFQSAEGVSKQLKLKGHWNKSLITKDLLVAGFTLFG 3921
            EF NL  D S+++   +FG LE VQFQS   VS  L L+GHW KSLITKDLL+ G    G
Sbjct: 1763 EFSNLSGDISTESALREFGYLEAVQFQSGTQVSDFLGLEGHWKKSLITKDLLIVGGVCVG 1822

Query: 3920 GLWMLYNHFKRAATTLVEFQASGKRQSQKRRFQIARNHKHAYEVNPDQTDVEHYFGEAYA 3741
              WM+  +F + +  +V FQ   KRQ QK +F  AR+ K  + V    + +EHYFG AY 
Sbjct: 1823 AAWMIGEYFFKKSKEVVAFQGYNKRQRQKLKFARARDEKMGHYVEAPDSTLEHYFGSAYT 1882

Query: 3740 KKPQQKGRTKGMGAKSRRFYNIYGFDPAEYTFARYVDPLTGYTLDENALTDARLVQEHFG 3561
            KK + KG+T GMG K+ RF N+YGFDP++YTF RYVDPLTGYTLDE+  TD RL+Q  F 
Sbjct: 1883 KKGKTKGKTHGMGKKNHRFVNMYGFDPSDYTFIRYVDPLTGYTLDESPYTDIRLIQSQFS 1942

Query: 3560 KIRLELREQDKLDAQALMANQKIEAYFVKDLAKQILKIDMTPHRPLELGCKTSTIAGYPE 3381
             IR +    D+L+   +     ++ Y VKD   QILKID+TPH PL++   T+ IAG+P+
Sbjct: 1943 DIREQQLLNDELERNMVYHKPGVQGYLVKDKTSQILKIDLTPHIPLKVCDTTNNIAGHPD 2002

Query: 3380 REGELRQAAPHVIVDASVLPKQNEYTSEGAEFESKATYQGLRDYNSISSSICLLENDSDG 3201
            REGELRQ     ++D + LP++     E  EFES + ++G+RDYN ISS IC LEN+S+G
Sbjct: 2003 REGELRQTGKGQLLDYAELPQK----KEXVEFESTSMFRGVRDYNPISSVICQLENESEG 2058

Query: 3200 YTMKIHGIGFGSMIITNQHLFKRNNGSLKIQSHRGEFLVPNTTQLKMYPFEGRDLLLIQM 3021
             T ++ G+GFG  IITNQHLF RNNGSL ++S  G F V +T  L+M P EGRD+L+I+M
Sbjct: 2059 RTTQLFGLGFGPFIITNQHLFVRNNGSLTVRSQMGVFKVNSTVTLQMRPVEGRDVLIIKM 2118

Query: 3020 PKDFPPFPQKLKFRLPVSGERVCLIGSNFQEKYISSTVSESSVIAQKDNTSFFRHWITTQ 2841
            PKDFPPFPQ+LKFR P   E+VCLI +NFQ+K  SS VSE+S I  K+NT F++HWI+T+
Sbjct: 2119 PKDFPPFPQRLKFRQPTHSEKVCLILTNFQQKSSSSMVSETSHIIPKENTYFWKHWISTK 2178

Query: 2840 KGHCGLPLVSVKDGHILGIHSMTSLEDSSSFFISLPPDIGPKYLQNEENIEWTKKWRLNL 2661
            +GHCG P+VS  DG ILGIHS++++ ++S++F   P      YL  E   EW K W+ N 
Sbjct: 2179 EGHCGSPIVSTTDGAILGIHSLSNMTNTSNYFACFPKGFTETYLATESVHEWVKGWKFNA 2238

Query: 2660 ELINWGAFKLSNEKPDNLFKLSKDIFELLDEPVDFQAKEGGWLYDRLGGNITAMARTSNQ 2481
              + WG+F L + KP   FK  K + +LL E V  Q  +  WL++    NI A+A+  + 
Sbjct: 2239 SNVCWGSFHLQDSKPTKEFKTVKLVTDLLGEAVYTQGCDSKWLFNAAHTNIQAVAQLESN 2298

Query: 2480 LVTKHVVKGQCLLFQTYLETHPEASNFFKPLMGFYQKSRLNKEAYIKDLFKYNAPTTVGV 2301
            LVTKH VKG+C LF+TYL     A +FF   MGFY+ S+LN+EAY +DL KY+    VG 
Sbjct: 2299 LVTKHTVKGKCKLFETYLNVDKAAHDFFSKYMGFYKPSKLNREAYTQDLMKYSKVIQVGE 2358

Query: 2300 LNPHVFELAEESVYNMFVGIGFQKCVYVTDQEAIFSALNMKAATGALYQGKKKEYFENFT 2121
            ++  VFE A   + +     GF    Y TD+++I++ALNMK+A GALY+GKK++YF+  +
Sbjct: 2359 VDCGVFESALTGLLHNLGRWGFTTACYTTDEDSIYAALNMKSAVGALYRGKKRDYFDAMS 2418

Query: 2120 EADKAQILKDSCFRLYTGKLGVWNGSLKAELRPLEKVQANKTRSFTAAPIDTLLGGKVCV 1941
             +++  +L  SC RLY G+LGVWNGSLKAELRP EKV  NKTR+FTAAPI+TLLGGKVCV
Sbjct: 2419 PSEREHLLFLSCKRLYFGQLGVWNGSLKAELRPKEKVDLNKTRTFTAAPIETLLGGKVCV 2478

Query: 1940 DDFNNQFYSLNLKAPWSVGMTKFYGGWNTLIRSLPEGWIYCDADGSQFDSSLTPYLINAV 1761
            DDFNN FYSL+LKAPWSVGMTKFYG WN L+R LP+ W+YCDADGSQFDSS++PY+INAV
Sbjct: 2479 DDFNNMFYSLHLKAPWSVGMTKFYGTWNQLMRKLPDDWVYCDADGSQFDSSISPYMINAV 2538

Query: 1760 LNLRLRFMEDWDVGTQMLENLYTEIVYTPIATPDGTIVKKYKGNNSGQPSTVVDNTIMVI 1581
            L +RL FMEDWD+G+QML+NLYTEIVYTPI+TPDGT+VKK+KGNNSGQPSTVVDNT++V+
Sbjct: 2539 LRIRLHFMEDWDIGSQMLQNLYTEIVYTPISTPDGTVVKKFKGNNSGQPSTVVDNTLLVV 2598

Query: 1580 LAMHYASGLYNSDVAITE---YCVFFVNGDDLIIAVHPDHQAFLDGLKESFTHLGLKYDF 1410
            LAMHYA  L  S V + E    CV+ VNGDDL+IA+ PD +  LDG +  F+ LGL Y+F
Sbjct: 2599 LAMHYA--LLKSGVPLEEQDSVCVYCVNGDDLLIAIRPDMEHKLDGFQALFSELGLNYEF 2656

Query: 1409 SNRCQSREDLWFMSHKAILSGDIYIPKLEEERIVSILEWDRAILPEHRLEAICASMIEAW 1230
            ++R + ++DLWFMSHKAI  G+I IPKLEEERIVSILEWDR+  P HRLEAICASM+E+W
Sbjct: 2657 NSRSKDKKDLWFMSHKAIQCGEILIPKLEEERIVSILEWDRSHEPIHRLEAICASMVESW 2716

Query: 1229 GYPDLLYQIRRFYYWVLEQAPYNHLSQTGKAPYISEAALKNLYTN-QSSPSELQRYVDSL 1053
            GYP+L ++IRRFY WVLEQ+PYN L+ TG APYI+E+ALK LYTN   + +EL++Y  S+
Sbjct: 2717 GYPELTHEIRRFYAWVLEQSPYNALATTGLAPYIAESALKTLYTNVHPTSTELEKY--SI 2774

Query: 1052 EWNNLTGEE--AVEFQGTEDESLNAGDQTKKTSEAK---GKDNKEKALETRPKDKDVDVG 888
            +++    EE   V FQ     +L+AG+ T + +E +   G+ N  KA+    KDKDVD+G
Sbjct: 2775 QFDEQMDEEDDMVYFQA---GTLDAGETTAQKTEGRKREGEGNSGKAVAV--KDKDVDLG 2829

Query: 887  TSGIYQVPKLKAIGTKFCLPKVKGRTIVNLDHLISYEPEQINLSNARATQSQFAQWYNGV 708
            T+G + VP+LK++ +K  LP +KG+++VNLDHL+SY+P+Q++LSNARAT  QF  WY+GV
Sbjct: 2830 TAGTHSVPRLKSMTSKLTLPMLKGKSVVNLDHLLSYKPKQVDLSNARATHEQFQNWYDGV 2889

Query: 707  KDAYELDDNSMGIVMSGLMVWCIENGTSPNINGQWTMMDGDEQVEYPLKPVVENAQPSLR 528
              +YEL+++SM I+++G MVWCIENGTSP+ING WTMMDG+EQ+ YPLKP++++A+PSLR
Sbjct: 2890 MASYELEESSMEIILNGFMVWCIENGTSPDINGVWTMMDGEEQISYPLKPMLDHAKPSLR 2949

Query: 527  QIMAHFSALAEAYIEKRNATKPYMPRYGLLRNLRDSSLARYAFDFYEVTSRTPPRAREAH 348
            Q+M HFSALAEAYIE R+  KPYMPRYGL RNLRD SLARYAFDFYE+T+ TP RA+EAH
Sbjct: 2950 QVMRHFSALAEAYIEMRSREKPYMPRYGLQRNLRDQSLARYAFDFYEITATTPVRAKEAH 3009

Query: 347  LQMKAAAIRNSSTKMFGLDGNAGDKEEDTERHTANDVSKNMHSLMGVR 204
            LQMKAAA++NS+T MFGLDGN    EEDTERHTA DV++NMH L+GV+
Sbjct: 3010 LQMKAAALKNSNTNMFGLDGNVTTSEEDTERHTATDVNRNMHHLLGVK 3057


>gb|AFQ95552.1| polyprotein [Narcissus late season yellows virus]
          Length = 3105

 Score = 2985 bits (7739), Expect = 0.0
 Identities = 1535/3038 (50%), Positives = 2042/3038 (67%), Gaps = 65/3038 (2%)
 Frame = -1

Query: 9122 EETHGASESARLVAASLELTSSTPKAMIRQRDYGHFAP------------------RPLN 8997
            +ETH  S         +       KA+++     H+ P                  +P  
Sbjct: 92   KETHEISTVIEPTWKEIRKAQLDEKALVKSLQECHYGPWGPQVNGAALSTMRRTEKQPPQ 151

Query: 8996 IDDKPNLGDAKKSKTLSARVHYDWLNLVRAVA------NIQKRTGVVIELISNRRKVTAN 8835
            +  K  L   +  K   A+ ++  L+  +  A       I  R   V E++     V   
Sbjct: 152  VVKKAPLNITRSRKVSKAKPNFVKLSTTQLNAFCKQLFKIASRHHRVAEVVDRSTAVRLK 211

Query: 8834 RLLKDNKRYVRVVTKHELGYRHKCDVRTGQWDRIVLKQLVEKSSGRLKHRADEFTPGSSG 8655
                +   Y RV   H        DV +  +   +L+  +  +SG   H +DE T G SG
Sbjct: 212  FEYFNGGTYARVHVHHMDEQMRPVDVSSTPFIDKMLESAMRVTSGNRAHTSDEITHGWSG 271

Query: 8654 IALLSDKIDGQVSTSRGGVFIIRGRDGSKLYDSQCVVTTHVAARMHHY-SVSERFWKGYD 8478
            + L  DK+ G         FI+RG+DG +L D++  V+T    RMHH+ S  E+FWKG++
Sbjct: 272  LLLNRDKLHGIRIHKTRKSFIVRGKDGKQLVDARIRVSTVRMKRMHHFTSPGEKFWKGFN 331

Query: 8477 RGFQMARG-PTDHTCDSNLDVEECGLVAAIATQALFPCGKITCQQCVDKFTSSGKSELRE 8301
              F   R    +H C++NLDVEECG VAAI   A++PCG+ITC +CVD   +S     + 
Sbjct: 332  TAFLTNRVYDREHVCETNLDVEECGTVAAIMCLAMYPCGRITCMKCVDDNINSEGQATQH 391

Query: 8300 EHSARLEELIGRIQKNHPKFKHVIQXXXXXXXXXXXXXXNVDQFSEVNRMIGERQETPFK 8121
            + S ++ + I  +++ HP F H +               N D F+E+  + G R  + F 
Sbjct: 392  KISEKVSKAIDIVREEHPSFTHALMIMERYMNSLADVSSNYDAFAEIQGITGGRNISAFA 451

Query: 8120 QLADLNNLMIKIGSCTSEEVALGTAKILEIVRFQRNRTDNIAKGSLAHFRNKVSSKVHVN 7941
             L  LN +++K    T  E   G   +LE+ R+ +NRT+NI KG+L  FRNK+S K H+N
Sbjct: 452  HLNKLNAILVKGPMATQVEFLEGMTHLLEVARYMKNRTENIEKGTLKSFRNKISQKAHIN 511

Query: 7940 LDLMCDNQLDDDGNFRWRQRAYHAKRLFSNFFDVIDPANGYDQFIKRKNPNGMRKTAIGN 7761
              LMCDNQLD +GNF W +R YHAKR F N+FDVIDP  GY ++  R NPNG RK AIG 
Sbjct: 512  PTLMCDNQLDKNGNFIWGERGYHAKRFFGNYFDVIDPMEGYSKYEVRPNPNGTRKLAIGR 571

Query: 7760 LIVSTNMQTFRQQMRGEPMESVPLSNACTSRLKGGFVYPCCCVTTDEGTPIESDMMIPTK 7581
            L+V TN +  R+QMRGE ++  PL+  C S L+G + + CCCVTTD G P+ S++ +PTK
Sbjct: 572  LLVPTNFEALREQMRGECVKPQPLTKECVSMLRGDYAHACCCVTTDGGEPLLSNLRMPTK 631

Query: 7580 DHLVIGNTGDSKFVNMPRMVEG--MYIAKQGYCYVNIFLAMLINVSDAQSKDYTKKVRDI 7407
             HLVIGN+GDSK+V++P   EG  MYIAK GYCY+NIFLAML+NV+++ +K +TK VRD+
Sbjct: 632  HHLVIGNSGDSKYVDLPA-TEGNKMYIAKNGYCYINIFLAMLVNVNESDAKAFTKMVRDV 690

Query: 7406 VIPKLGEWPTLLDVATMCHFLTVFYPDVKSAELPRILVDHRNQIMHVIDSFGSLTTGYHI 7227
            +I KLG WP+LLDVAT C  L  F+PDV +AELPR+ VDH ++ +HVIDS+GS TTGYHI
Sbjct: 691  LIDKLGTWPSLLDVATACCLLKFFFPDVSNAELPRMFVDHESKTIHVIDSYGSQTTGYHI 750

Query: 7226 LKANTVGQLVKFSNDELQSEMMHYRVGGTMMSEESSEDAA------VTLLARGVYRPTEL 7065
            LK NT+ QLVKF+   L+S++ HY VGG  ++EE++E         + LL +G+Y+P+ +
Sbjct: 751  LKTNTIEQLVKFTEFGLESDLKHYLVGGDPLAEETTEGVMSDPNWNLKLLVQGIYKPSVM 810

Query: 7064 KRVLEKDPLLLVYGLLSPRVLIAMHKSKTLEMALDQWLHKDTSVANLCQMIDVLAKKVSV 6885
            +  L  +  L +Y +LSP +L+A++ S +LE  +  +L KD  +  L  +++ LA+KVS 
Sbjct: 811  RENLIWNRYLPLYAMLSPGILLALYNSGSLESLIKYFLQKDNDLVVLLVVLESLAQKVSK 870

Query: 6884 SKLFRTQQQIISENAMEIARCVDRCRTTS--PSRTFVQLVLTRLVESRNTSKELLSAGFQ 6711
            S     Q +I+   A  +   V   +     P  T +++++  L      + EL +AG+ 
Sbjct: 871  SSSVLAQLRILEHGAPHVIEAVQNIKQKHILPYNTVMKMLMV-LSARAEANLELDAAGYN 929

Query: 6710 TLMYEGEEMREKKFSEVLAHSWRDLNWSQRCSAIWHSRKASQHATNSSIEPEQTDSGETW 6531
             +     E+ EK + ++L + W++L+WS +   I+ S K + H     +     D    +
Sbjct: 930  QIRLTSIEVMEKNYLQILENQWKELSWSSKLLVIFRSSKFAMHTRRCLVPESTADLRGRY 989

Query: 6530 TERFICLRGKLTSHVKVWTTSALSNGKRKAYETCGKVVCKLITSTKFFCPDIIKMVNVLS 6351
            +E      G+    +    + AL   + KA         +  +   +  PD++K +NVL 
Sbjct: 990  SESITSYFGQARQKLHEVKSCALLRFQEKAQAARMYTSRRACSIINYMIPDVVKFINVLL 1049

Query: 6350 VFCLLLQISTVVNRHLLQYRILKEEQQNMRDDKDFETMMGIYNLYVKTYEGEYPTLKQFS 6171
            V  LLL I+    R LL +  +K +   +R+DKD + +  +Y +Y+  ++ E PT + F 
Sbjct: 1050 VVSLLLSIARECQRLLLAHAEMKSQAAQIREDKDAQQIDLLYKMYMMEHK-ETPTKEGFL 1108

Query: 6170 TYLQKVNPQIYAYYERTMGEPDDTDECVELQAKGKGEIELERTIAFVALIMMMFDAERSD 5991
             Y+ K  P++  Y+ +        DE V+ QAK + E ELE+ +AF+ALI+MMFD+ERSD
Sbjct: 1109 AYIGKQQPELLEYFHQ--------DEEVKHQAKRRSEQELEKIVAFIALILMMFDSERSD 1160

Query: 5990 CVYKVLNKLRGIMNPISAETVAFQGLDDMKELLGETKMAIDIELDTENHQLNRLGGV-TF 5814
            CV K+LNKL+ +M+    + V  Q LDD+++ L E  + ID EL  +  Q   L    TF
Sbjct: 1161 CVTKILNKLKNLMSSAEPD-VYHQSLDDIQDELSEKSLTIDFELALDESQTQALMRERTF 1219

Query: 5813 GDWWTHQLNQNRTVPHYRTEGKFVEFTRANAMIVANEIAHSDQTDFLVMGAVGSGKSTGL 5634
             +WW  Q+ +  TVPHYRTEG  V FTR+ A  VAN IAH ++TD L+MGAVGSGKSTGL
Sbjct: 1220 QEWWDQQITRGTTVPHYRTEGHLVTFTRSTAAQVANNIAHDNKTDILLMGAVGSGKSTGL 1279

Query: 5633 PFHLSRKGKVLMIEPTKPLAENVHKQLKGNPFMSNATLRMRGCSVFGSSPITVMTSGYAL 5454
            PF+LS+KG VL++EPT+PLAENVHKQL   PF +N TLRMRG ++FG++PIT+MT+G+AL
Sbjct: 1280 PFYLSKKGNVLLLEPTRPLAENVHKQLAKEPFYTNTTLRMRGLTIFGAAPITIMTTGFAL 1339

Query: 5453 HYFAHNIAQLAEYQFVIIDECHVHDASAMAFRCLLLEYDYQGKVLKVSATPPGREATFNT 5274
            HYFAHN  +L EY ++I+DECHVHDA+AMA RCL+ +  Y GK++K SATPPGRE TFN 
Sbjct: 1340 HYFAHNRVRLNEYDYIILDECHVHDANAMALRCLIHDNQYNGKLIKASATPPGREITFNP 1399

Query: 5273 QHPVLVKMEESLSFQQFVALQGSGANGDITQNGDNILIYVASYNEVDTLSKMLLDKNHKV 5094
            QHPV +  EE LS Q F   QGSG+N D+TQ+GDNIL+YVASY EVD LS +LL+KN+KV
Sbjct: 1400 QHPVNIIPEEILSLQGFAQAQGSGSNCDVTQHGDNILVYVASYGEVDILSALLLEKNYKV 1459

Query: 5093 TKVDGRTMKMGQVEIPTAGTKEKKHFIVATNIIENGVTLDIDVVVDFGMKVVPELDIDNR 4914
            TKVDGRTMK+G+VEI T GT  KKHFIVATNIIENGVTLD++VVVDFG KVVP LD DNR
Sbjct: 1460 TKVDGRTMKIGKVEIVTNGTPNKKHFIVATNIIENGVTLDVEVVVDFGTKVVPFLDCDNR 1519

Query: 4913 LIRYSKVAISYGERIQRLGRVGRNKEGVALRIGVTEKGLSAVPNVTATEAAFYCFAYGLP 4734
            ++ Y+KVAI+YGERIQR+GRVGR+K G ALRIG TEKGLS VP+  ATEAAF CF YGLP
Sbjct: 1520 MMCYNKVAINYGERIQRVGRVGRHKPGCALRIGHTEKGLSEVPSSIATEAAFKCFTYGLP 1579

Query: 4733 VMTSGVAVSMLSNCTVNQARTMMHFELPLFYMVHMVRFDGSMHPELHKCLKDYKLRDSEI 4554
            V+T+ V+ S+L++ TV QARTM  FEL  FYMVH VRFDGSMHP LH   K +KLRDSEI
Sbjct: 1580 VITNNVSTSLLAHATVPQARTMAQFELTPFYMVHFVRFDGSMHPALHSLFKKFKLRDSEI 1639

Query: 4553 ILNKMAIPSSGVKSWMTAGEYSRLGARNSIEEFVRIPFYARDIPDKVHERVWEVVVTFKR 4374
             LNK+AIP+ G+++WMT  EY+RLG +    + +RIPF  + IPDK+H  VWE +V FK 
Sbjct: 1640 FLNKLAIPNKGLRNWMTGAEYARLGCQVDDRQDIRIPFVCKGIPDKLHTEVWETIVKFKA 1699

Query: 4373 DAGFGKIQSASACKVAYTLQTDAASIPRTICIIEELIKNEVKKQEYFQ-VASGVDCGSGF 4197
            DAGFG++ SASACK+AYTLQTD  +I RT+ II+ LI  E  KQEYF+ V S V   S F
Sbjct: 1700 DAGFGRLTSASACKIAYTLQTDITAIQRTVRIIDTLIAEERVKQEYFKTVTSNVVSSSNF 1759

Query: 4196 SLINITNALRSRHMSNHTAENIAILEAAKNQIYEFRNLGIDPS---------SKTVCDFG 4044
            SL +I+NA+RSR  S+HT ENI +LEAAK Q+ EFRNL +D S            + DFG
Sbjct: 1760 SLQSISNAIRSRFASDHTRENIGVLEAAKAQLCEFRNLNMDHSFTRINDTISQNFIRDFG 1819

Query: 4043 ALECVQFQSAEGVSKQLKLKGHWNKSLITKDLLVAGFTLFGGLWMLYNHFKRAATTLVEF 3864
            ALE VQ QS   VSK L +KG WN SLIT+D+LV    L GG+WML +H+  AA+ +V  
Sbjct: 1820 ALETVQHQSTHDVSKCLGIKGRWNTSLITRDVLVLAGVLGGGIWMLLSHYATAASEMVHH 1879

Query: 3863 QASGKRQSQKRRFQIARNHKHAYEVNPDQTDVEHYFGEAYAKKPQQKGRTKGMGAKSRRF 3684
            +A GKRQ QK +F+ AR++K+  EV  D   +EHYFG AY  K +  G+ +GMGAK RRF
Sbjct: 1880 EAKGKRQQQKLKFRQARDNKNGREVYGDDGTIEHYFGAAYRAKGKVAGKVRGMGAKQRRF 1939

Query: 3683 YNIYGFDPAEYTFARYVDPLTGYTLDENALTDARLVQEHFGKIRLELREQDKLDAQALMA 3504
             N+YGFDP +++  R+VDPLTG TLDEN  TD  L+QEHF  IR E   QD+LD Q + A
Sbjct: 1940 VNMYGFDPEDFSAVRFVDPLTGATLDENPNTDIHLIQEHFTVIREEKIGQDELDVQRVRA 1999

Query: 3503 NQKIEAYFVKDLAKQILKIDMTPHRPLELGCKTSTIAGYPEREGELRQAAPHVIVDASVL 3324
            +  IEAY++ +   + LK+D+TPH PL    K +TIAG+PERE ELRQ      +    +
Sbjct: 2000 SPGIEAYYINNRTGKALKVDLTPHNPLRSCDKKATIAGFPEREFELRQTGAPRPIRMEEV 2059

Query: 3323 PKQNEYTSEGAEFESKATYQGLRDYNSISSSICLLENDSDGYTMKIHGIGFGSMIITNQH 3144
            PK+ E T  G   ES++ ++GLRDYN I+SS+C L N+SDG+T  ++G+GFG +I+TN+H
Sbjct: 2060 PKEQEDT--GVNHESESLFKGLRDYNPIASSVCKLTNNSDGHTDSLYGVGFGPLILTNRH 2117

Query: 3143 LFKRNNGSLKIQSHRGEFLVPNTTQLKMYPFEGRDLLLIQMPKDFPPFPQKLKFRLPVSG 2964
            LF+RNNG+L IQ+  G+FLV NTTQL ++P   RDL+L+++PKD P FPQ+L FR PV  
Sbjct: 2118 LFERNNGTLLIQTRNGDFLVKNTTQLHLFPIPDRDLILVRLPKDVPRFPQRLVFRSPVDN 2177

Query: 2963 ERVCLIGSNFQEKYISSTVSESSVIAQKDNTSFFRHWITTQKGHCGLPLVSVKDGHILGI 2784
            ER+C++GSNFQ K +SS VSESS    +  ++F++HWI+T+ G CG PLVS +DG ILG+
Sbjct: 2178 ERICMVGSNFQAKSVSSLVSESSTTLHEKGSNFWKHWISTKDGQCGTPLVSTRDGAILGL 2237

Query: 2783 HSMTSLEDSSSFFISLPPDIGPKYLQNEENIEWTKKWRLNLELINWGAFKLSNEKPDNLF 2604
            HS+++  +S ++F S P +   +YL   +N EW K W+ N + I+WG+  +   +P  LF
Sbjct: 2238 HSLSNFANSINYFTSFPEEFTKQYLDTHDNHEWAKHWKYNTDSISWGSLNIKAAQPKGLF 2297

Query: 2603 KLSKDIFELLDEPVDFQAKEGGWLYDRLGGNITAMARTSNQLVTKHVVKGQCLLFQTYLE 2424
            K SK + +L D  V  Q   GGW+ D++ GN+ A+A   NQLVTKH VKG+C +F  YL 
Sbjct: 2298 KTSKLVMDLDDTAVYSQMSRGGWMRDQIYGNLKAIASVPNQLVTKHTVKGKCQMFDLYLR 2357

Query: 2423 THPEASNFFKPLMGFYQKSRLNKEAYIKDLFKYNAPTTVGVLNPHVFELAEESVYNMFVG 2244
             H EA  FF P++GFYQKSRLN+EAY KDL KY +   VG++   +FE     V      
Sbjct: 2358 LHEEAREFFTPMLGFYQKSRLNREAYAKDLLKYASVIEVGIVKSEIFEEVVNVVIKDLWK 2417

Query: 2243 IGFQKCVYVTDQEAIFSALNMKAATGALYQGKKKEYFENFTEADKAQILKDSCFRLYTGK 2064
            +GFQ C Y+TD+ +IF ALNMK+A GALYQGKK++YF +FT   K  IL +SC RL+ G+
Sbjct: 2418 LGFQTCNYITDENSIFEALNMKSAVGALYQGKKRDYFMDFTPQMKEDILYESCERLFKGE 2477

Query: 2063 LGVWNGSLKAELRPLEKVQANKTRSFTAAPIDTLLGGKVCVDDFNNQFYSLNLKAPWSVG 1884
            +GVWNGSLK+ELRP EKV+ANKTR+FTAAPIDTLL GKVCVDDFNNQFY  +LK PWSVG
Sbjct: 2478 MGVWNGSLKSELRPTEKVEANKTRTFTAAPIDTLLAGKVCVDDFNNQFYDYHLKGPWSVG 2537

Query: 1883 MTKFYGGWNTLIRSLPEGWIYCDADGSQFDSSLTPYLINAVLNLRLRFMEDWDVGTQMLE 1704
            MTKFYGGW+ L+  LP+GW+YCDADGSQFDSSL+PYLINAVL++R  FME+W+VG +ML 
Sbjct: 2538 MTKFYGGWDDLLSKLPDGWVYCDADGSQFDSSLSPYLINAVLHIRQEFMEEWNVGERMLS 2597

Query: 1703 NLYTEIVYTPIATPDGTIVKKYKGNNSGQPSTVVDNTIMVILAMHYASGLYNSDVAI--- 1533
            NLYTEIVYTPI+TPDGT+VKK+KGNNSGQPSTVVDNT+MVILAM Y+  L  + V     
Sbjct: 2598 NLYTEIVYTPISTPDGTLVKKFKGNNSGQPSTVVDNTVMVILAMRYS--LLKAGVPTEQH 2655

Query: 1532 TEYCVFFVNGDDLIIAVHPDHQAFLDGLKESFTHLGLKYDFSNRCQSREDLWFMSHKAIL 1353
            +E C F VNGDDL++A+ P+ +  LD L  SF+ LGLKY F  R + + +LWFMSHK I 
Sbjct: 2656 SEMCRFLVNGDDLLLALSPEFECILDDLASSFSELGLKYTFDQRTREKGELWFMSHKGIK 2715

Query: 1352 SGDIYIPKLEEERIVSILEWDRAILPEHRLEAICASMIEAWGYPDLLYQIRRFYYWVLEQ 1173
               I+IPKLE ER+VSILEWDR+  PEHRLEAICA+MIE+WGY +L  +IR+FY W+L Q
Sbjct: 2716 REGIWIPKLEPERVVSILEWDRSKEPEHRLEAICAAMIESWGYDELTREIRKFYTWLLSQ 2775

Query: 1172 APYNHLSQTGKAPYISEAALKNLYTNQ-SSPSELQRYVDS----------LEWNNLTGEE 1026
            APY+ L+Q GKAPYI+E AL+ LY N+ +  S++ RY+++          LE  + +G++
Sbjct: 2776 APYSGLAQEGKAPYIAETALRKLYLNKDAEQSDIMRYMEAILEDFDDGTPLEVYHQSGKQ 2835

Query: 1025 AVEFQGTEDESLNAGDQTKKTSEAKGKDNKEKALETRP----KDKDVDVGTSGIYQVPKL 858
             ++  G E+E  N+ ++ KKT++  G          RP    +DKDV+VG SG + VP+L
Sbjct: 2836 TLD-AGVEEERNNSKNKEKKTTDESG---------VRPPSMNRDKDVNVGVSGSFPVPRL 2885

Query: 857  KAIGTKFCLPKVKGRTIVNLDHLISYEPEQINLSNARATQSQFAQWYNGVKDAYELDDNS 678
            K I  K  LP    R  +NLDHLI+Y P Q++LSN RATQ QF  WY GV   Y++D++ 
Sbjct: 2886 KMITRKLTLPLYNKRIALNLDHLITYTPRQVDLSNTRATQRQFDTWYEGVMADYDVDESK 2945

Query: 677  MGIVMSGLMVWCIENGTSPNINGQWTMMDGDEQVEYPLKPVVENAQPSLRQIMAHFSALA 498
            M I+++GLMVWCIENGTSPNING W MMDG+EQVE+PLKPV+E+A+P+LRQIMAHFS  A
Sbjct: 2946 MAIILNGLMVWCIENGTSPNINGVWVMMDGEEQVEFPLKPVIEHAKPTLRQIMAHFSNGA 3005

Query: 497  EAYIEKRNATKPYMPRYGLLRNLRDSSLARYAFDFYEVTSRTPPRAREAHLQMKAAAIRN 318
            EAYIE RN  +PYMPRYGL RNL D SLAR+AFDFYE+TS+TP RAREAHLQMKAAA+R 
Sbjct: 3006 EAYIEMRNYQQPYMPRYGLQRNLTDMSLARFAFDFYEMTSKTPIRAREAHLQMKAAALRG 3065

Query: 317  SSTKMFGLDGNAGDKEEDTERHTANDVSKNMHSLMGVR 204
            +   +FGLDGN G  EE+TERHT +DV++NMHSL+GVR
Sbjct: 3066 TQNHLFGLDGNVGTTEENTERHTTDDVNRNMHSLLGVR 3103


>dbj|BAM99210.1| polyprotein [Turnip mosaic virus]
          Length = 3162

 Score = 2983 bits (7734), Expect = 0.0
 Identities = 1518/2952 (51%), Positives = 2037/2952 (69%), Gaps = 47/2952 (1%)
 Frame = -1

Query: 8918 LVRAVANIQKRTGVVIELISNRRKVTANRLLKDNKRYVRVVTKHELGYRHKCDVRTGQWD 8739
            L+R++  I K     IE  + ++ V  + ++K+ K++ RV  KH LG R + D+ TG  +
Sbjct: 228  LIRSLIKIFKAKNANIEY-TEKKSVKIDFIVKEQKKFARVQVKHLLGKRARRDLSTGAKE 286

Query: 8738 RIVLKQLVEKSSGRLKHRADEFTPGSSGIALLSDKIDGQVSTSRGGVFIIRGRDGSKLYD 8559
               +  L E S  +    A     G SGI + S  +  + S S    F+IRG    KLYD
Sbjct: 287  NSFIDTLSEYSGNKTAINAGVVCAGWSGIVIRSGVLTQRQSRSPSKAFVIRGEHEGKLYD 346

Query: 8558 SQCVVTTHVAARMHHYSVS-ERFWKGYDRGFQMARGPT-DHTCDSNLDVEECGLVAAIAT 8385
            ++  +T  ++ ++ H+S +   FWKG+DR F   R    +HTC + L+V ECG VAA+  
Sbjct: 347  ARIKITKTMSHKIIHFSAAGANFWKGFDRCFLAYRSDNREHTCYTGLNVVECGEVAALMC 406

Query: 8384 QALFPCGKITCQQCVDKFTSSGKSELREEHSARLEELIGRIQKNHPKFKHVIQXXXXXXX 8205
             A+FPCGKITC  CV     S       +   RL +L   I+ N+P+FKH +Q       
Sbjct: 407  LAMFPCGKITCPDCVTDSELSQGQASTSQMKHRLNQLREVIKANYPRFKHAVQILDRYDQ 466

Query: 8204 XXXXXXXNVDQFSEVNRMIGERQETPFKQLADLNNLMIKIGSCTSEEVALGTAKILEIVR 8025
                   N   F+E+  +    ++  F     LN ++IK  + T EE    T  +LEI R
Sbjct: 467  SLRSENTNYQDFAEIQSLTEGMEKAAFPHANKLNAILIKGATATGEEYEQATKHLLEITR 526

Query: 8024 FQRNRTDNIAKGSLAHFRNKVSSKVHVNLDLMCDNQLDDDGNFRWRQRAYHAKRLFSNFF 7845
            + +NRT+NI KGSL  FRNK+S K H+N  LMCDNQLD +GNF W +R YHAKR FSN+F
Sbjct: 527  YMKNRTENIEKGSLKSFRNKISQKAHINPTLMCDNQLDKNGNFIWGERGYHAKRFFSNYF 586

Query: 7844 DVIDPANGYDQFIKRKNPNGMRKTAIGNLIVSTNMQTFRQQMRGEPMESVPLSNACTSRL 7665
            ++IDP  GY Q+  R  PNG RK AIG LIV TN +  R+QM+GEP++  P++  C S+ 
Sbjct: 587  EIIDPKKGYAQYETRIVPNGSRKLAIGKLIVPTNFEVLREQMQGEPVDQCPVTVECVSKS 646

Query: 7664 KGGFVYPCCCVTTDEGTPIESDMMIPTKDHLVIGNTGDSKFVNMPRMVEG-MYIAKQGYC 7488
            +G FV+ CCCVTT+ G P+ S++ +PTK HLVIGN+GD K+V++P + E  MYIAK+GYC
Sbjct: 647  QGDFVHACCCVTTESGDPVFSEIKMPTKHHLVIGNSGDPKYVDLPEIEENKMYIAKEGYC 706

Query: 7487 YVNIFLAMLINVSDAQSKDYTKKVRDIVIPKLGEWPTLLDVATMCHFLTVFYPDVKSAEL 7308
            Y+NIFLAML+NV ++Q+K++TK VRD ++ +LG+WPTLLDVAT C+FL VFYPDV +AEL
Sbjct: 707  YINIFLAMLVNVKESQAKEFTKVVRDKLVGELGKWPTLLDVATACYFLKVFYPDVANAEL 766

Query: 7307 PRILVDHRNQIMHVIDSFGSLTTGYHILKANTVGQLVKFSNDELQSEMMHYRVGGTMMSE 7128
            PR+LVDH+ +I+HVIDS+GSL+TGYHILK NTV QL+KF+ + L+S + HYRVGGT++ +
Sbjct: 767  PRMLVDHKTKIIHVIDSYGSLSTGYHILKTNTVEQLIKFTRNNLESSLKHYRVGGTILED 826

Query: 7127 E-SSEDAA-----VTLLARGVYRPTELKRVLEKDPLLLVYGLLSPRVLIAMHKSKTLEMA 6966
               +E+ A     +  L +G+Y+P  LK  +  +P L +Y LLSP V++A + S +LE  
Sbjct: 827  AYGAENIADPQWNIKRLIQGIYKPKVLKEDMLLNPYLPLYALLSPGVILAFYNSGSLECL 886

Query: 6965 LDQWLHKDTSVANLCQMIDVLAKKVSVSKLFRTQQQIISENAMEIARCVDRCRTTSP--- 6795
            +D ++  D ++A L  ++  LA+K+S S+    Q QII  +  E+     R     P   
Sbjct: 887  MDYYIQADCNIAVLLVVLKSLAQKISTSQSVLAQLQIIDRSLPELVEA--RANVVGPDVA 944

Query: 6794 SRTFVQLVLTRLVESRNTSKELLSAGFQTLMYEGEEMREKKFSEVLAHSWRDLNWSQRCS 6615
            +       +  L+     + EL   G+  L     ++ EK + ++L  +W++L WSQRC+
Sbjct: 945  ATIACNKFMAMLLHMAEPNNELAGGGYTILRSHSLDILEKSYLQILDEAWKELKWSQRCA 1004

Query: 6614 AIWHSRKASQHATNSSIEPEQTDSGETWTERFICLRGKLTSHVKVWTTSALSNGKRKAYE 6435
             I++S K +  +          D G  ++E             KV    A S GKR  Y+
Sbjct: 1005 VIYYSSKQAIFSQKDLTMQNTADLGGRYSESVT----SSYERAKVGAKGAYSTGKRMLYD 1060

Query: 6434 TCG----KVVCKLITSTKFFCPDIIKMVNVLSVFCLLLQISTVVNRHLLQYRILKEEQQN 6267
            +      K+   +  +  +F PDI+K +NVL    LLL+I+T  NR +   + LK + + 
Sbjct: 1061 STSWANKKISSGVCRTINYFVPDILKFINVLVCLSLLLKIATEANRIVTMQKRLKLDIEE 1120

Query: 6266 MRDDKDFETMMGIYNLYVKTYEGEYPTLKQFSTYLQKVNPQIYAYYERTMGEPDDTDECV 6087
                K  E  +  +++ +    G++PTL++F T++    P ++ +         + DE V
Sbjct: 1121 SERQK-IEWELAFHHVMLTDSLGQHPTLEEFETHIAAKAPHLWKHIS-------EADEPV 1172

Query: 6086 ELQAKGKGEIELERTIAFVALIMMMFDAERSDCVYKVLNKLRGIMNPISAETVAFQGLDD 5907
            + QAK + E ELER IAFVAL++MMFDAERSDCV K+LNKL+G+++ +    V  Q L+D
Sbjct: 1173 KHQAKRQSEQELERIIAFVALVLMMFDAERSDCVTKILNKLKGLVSTVEPN-VYHQTLND 1231

Query: 5906 MKELLGETKMAIDIELDTENHQLNRLGGV-TFGDWWTHQLNQNRTVPHYRTEGKFVEFTR 5730
            +++ L E  + +D EL  +   + +L    TF  WW HQL++  T+PHYRTEGKF+ FTR
Sbjct: 1232 IEDDLNERNLFVDFELSNDETVVQQLPAEKTFSSWWNHQLSRGFTIPHYRTEGKFMTFTR 1291

Query: 5729 ANAMIVANEIAHSDQTDFLVMGAVGSGKSTGLPFHLSRKGKVLMIEPTKPLAENVHKQLK 5550
            A A  VAN I+H    D L+MGAVGSGKSTGLP HLSRKG VL++EPT+PLAENVHKQL 
Sbjct: 1292 ATATEVANRISHESDKDILLMGAVGSGKSTGLPHHLSRKGNVLLLEPTRPLAENVHKQLA 1351

Query: 5549 GNPFMSNATLRMRGCSVFGSSPITVMTSGYALHYFAHNIAQLAEYQFVIIDECHVHDASA 5370
              PF  N TLRMRG + FGS+PI+VMTSG+AL+YFA+N A++ E+ F+I DECHVHDA+A
Sbjct: 1352 QAPFYQNTTLRMRGLTTFGSAPISVMTSGFALNYFANNRARIEEFDFIIFDECHVHDANA 1411

Query: 5369 MAFRCLLLEYDYQGKVLKVSATPPGREATFNTQHPVLVKMEESLSFQQFVALQGSGANGD 5190
            MA RCLL E DY GK++KVSATPPGRE  F+TQ+P+ +  E++LSFQ FV  QGSG+N D
Sbjct: 1412 MAMRCLLHECDYSGKIIKVSATPPGREVEFSTQYPITIATEDTLSFQDFVGAQGSGSNCD 1471

Query: 5189 ITQNGDNILIYVASYNEVDTLSKMLLDKNHKVTKVDGRTMKMGQVEIPTAGTKEKKHFIV 5010
            +   GDNIL+YVASYNEVDTLSK+L++++ KVTKVDGRTMK+G +EI T+GT  +KHFIV
Sbjct: 1472 VISKGDNILVYVASYNEVDTLSKLLVERDCKVTKVDGRTMKVGNIEIVTSGTPSRKHFIV 1531

Query: 5009 ATNIIENGVTLDIDVVVDFGMKVVPELDIDNRLIRYSKVAISYGERIQRLGRVGRNKEGV 4830
            ATNIIENGVTLDIDVVVDFG KV+P LD DNR++  SK +I+YGERIQRLGRVGR+K G 
Sbjct: 1532 ATNIIENGVTLDIDVVVDFGTKVLPYLDTDNRMLSTSKTSINYGERIQRLGRVGRHKPGH 1591

Query: 4829 ALRIGVTEKGLSAVPNVTATEAAFYCFAYGLPVMTSGVAVSMLSNCTVNQARTMMHFELP 4650
            ALRIG TEKGLS VP+  ATEAA  CF YGLPV+T+ V+ S+L N TV QARTM  FE+ 
Sbjct: 1592 ALRIGHTEKGLSEVPSCIATEAALKCFTYGLPVITNNVSTSILGNVTVKQARTMSVFEIT 1651

Query: 4649 LFYMVHMVRFDGSMHPELHKCLKDYKLRDSEIILNKMAIPSSGVKSWMTAGEYSRLGARN 4470
             FYM  +VR+DGSMHP++H  L+ +KLRDSEI LNK AIP+  V +W+ A EY+RLGA  
Sbjct: 1652 PFYMSQVVRYDGSMHPQVHALLQKFKLRDSEISLNKFAIPNRAVNTWLRASEYARLGANV 1711

Query: 4469 SIEEFVRIPFYARDIPDKVHERVWEVVVTFKRDAGFGKIQSASACKVAYTLQTDAASIPR 4290
              ++ VRIPF  RDIP+K+H  +W+V+V FK DAGFG++ SASA KVAYTLQTD  SI R
Sbjct: 1712 EAKQNVRIPFMCRDIPEKLHFEMWDVIVKFKGDAGFGRLSSASASKVAYTLQTDVNSIQR 1771

Query: 4289 TICIIEELIKNEVKKQEYFQ-VASGVDCGSGFSLINITNALRSRHMSNHTAENIAILEAA 4113
            T+ II+ LI  E +KQEYF+ V S     S FSL +ITNA+RSR M +HT ENI+ILE A
Sbjct: 1772 TVTIIDSLIAEERRKQEYFKTVTSNCVSSSNFSLQSITNAIRSRMMKDHTCENISILEGA 1831

Query: 4112 KNQIYEFRNLGIDPSSKTVCD---------FGALECVQFQSAEGVSKQLKLKGHWNKSLI 3960
            K+Q+ EFRNL  D S  T  D         +GALE V  QSA  +S  LKL+G WNK+LI
Sbjct: 1832 KSQLLEFRNLNADHSFATRADGISQHFMREYGALEAVHHQSASEMSSFLKLRGKWNKALI 1891

Query: 3959 TKDLLVAGFTLFGGLWMLYNHFKRAATTLVEFQASGKRQSQKRRFQIARNHKHAYEVNPD 3780
            T+D+LV    L GG+WM++ H K +    V  +A GKRQ QK +F+ AR++K   EV  D
Sbjct: 1892 TRDVLVLCGVLGGGIWMIFQHLKSSMAEPVVHEAKGKRQRQKLKFRNARDNKMGREVYGD 1951

Query: 3779 QTDVEHYFGEAYAKKPQQKGRTKGMGAKSRRFYNIYGFDPAEYTFARYVDPLTGYTLDEN 3600
               +EH+FG+AY KK + KGRT+G+G K+R+F N+YGFDP +++  R+VDPLTG TLD++
Sbjct: 1952 DNTIEHFFGDAYTKKGKNKGRTRGLGHKNRKFINMYGFDPEDFSAVRFVDPLTGATLDDS 2011

Query: 3599 ALTDARLVQEHFGKIRLELREQDKLDAQALMANQKIEAYFVKDLAKQILKIDMTPHRPLE 3420
              TD  LVQEHFGKIR++L E+D LD   +  N++++AY++ +   + LK+D+TPH PL+
Sbjct: 2012 PFTDISLVQEHFGKIRMDLIEEDVLDPNQVRMNRQVQAYYMNNKTGKALKVDLTPHIPLK 2071

Query: 3419 LGCKTSTIAGYPEREGELRQAAPHVIVDASVLPKQNEYTSEGAEFESKATYQGLRDYNSI 3240
            +    +T+AG+PERE ELRQ      +    +PK NE T    + ES + ++GLRDYN +
Sbjct: 2072 VCDLHATVAGFPERENELRQTGKAEPISLDEVPKANE-TLIPVDHESSSMFRGLRDYNPV 2130

Query: 3239 SSSICLLENDSDGYTMKIHGIGFGSMIITNQHLFKRNNGSLKIQSHRGEFLVPNTTQLKM 3060
            S++IC L N SDG +  ++G+GFG +I+TN+HLF+RNNG L I+S  GEF++ NTTQL +
Sbjct: 2131 SNNICHLTNISDGASNSLYGVGFGPLILTNRHLFERNNGELLIKSRHGEFIIKNTTQLHL 2190

Query: 3059 YPFEGRDLLLIQMPKDFPPFPQKLKFRLPVSGERVCLIGSNFQEKYISSTVSESSVIAQK 2880
             P   RDLLLI++PKD PPFPQKL+FR P  GER+C++GSNFQ K I+S VSE+S +   
Sbjct: 2191 LPIPDRDLLLIRLPKDIPPFPQKLQFRQPEKGERICMVGSNFQAKSITSVVSETSTVMPL 2250

Query: 2879 DNTSFFRHWITTQKGHCGLPLVSVKDGHILGIHSMTSLEDSSSFFISLPPDIGPKYLQNE 2700
            +N+ F++HWI+T+ G CG P+VS KDG I+G+HS+ S ++S ++F + P D   KYLQ+ 
Sbjct: 2251 ENSQFWKHWISTKDGQCGSPMVSTKDGKIIGLHSLASFQNSINYFAAFPDDFTKKYLQSI 2310

Query: 2699 ENIEWTKKWRLNLELINWGAFKLSNEKPDNLFKLSKDIFELLDEPVDFQAKEGGWLYDRL 2520
            +  EW K W+ N   I+WG+  + + +P  LFK+SK + +L D  V  Q +   W++++L
Sbjct: 2311 DTHEWVKHWKYNTSSISWGSLNIQSSQPSGLFKVSKLVSDLNDTAVYAQTEHQRWMFNQL 2370

Query: 2519 GGNITAMARTSNQLVTKHVVKGQCLLFQTYLETHPEASNFFKPLMGFYQKSRLNKEAYIK 2340
             GN+ A+A   +QLVTKH VKG+C +F  YL+ H +A +FF+P++G YQKSRLN+EAY K
Sbjct: 2371 HGNLKAVAHCPSQLVTKHTVKGKCQMFDLYLKLHDDARDFFQPMLGQYQKSRLNREAYAK 2430

Query: 2339 DLFKYNAPTTVGVLNPHVFELAEESVYNMFVGIGFQKCVYVTDQEAIFSALNMKAATGAL 2160
            DL KY  P   G ++  VFE     V +     GF+ C YVTD+  IF+ALNMK+A GAL
Sbjct: 2431 DLLKYATPIEAGNIDCDVFEKTVVIVIDDLRRYGFETCNYVTDETDIFNALNMKSAVGAL 2490

Query: 2159 YQGKKKEYFENFTEADKAQILKDSCFRLYTGKLGVWNGSLKAELRPLEKVQANKTRSFTA 1980
            Y+GKKK+YF  +T   K +ILK SC RL+ GK+GVWNGSLKAELRPLEKV+ANKTR+FTA
Sbjct: 2491 YKGKKKDYFAEYTPEMKEEILKQSCERLFLGKMGVWNGSLKAELRPLEKVEANKTRTFTA 2550

Query: 1979 APIDTLLGGKVCVDDFNNQFYSLNLKAPWSVGMTKFYGGWNTLIRSLPEGWIYCDADGSQ 1800
            AP+DTLLGGKVCVDDFNNQFY  NLKAPWSVGMTKFY GWN L+ SLP+GW+YCDADGSQ
Sbjct: 2551 APLDTLLGGKVCVDDFNNQFYDYNLKAPWSVGMTKFYCGWNRLLESLPDGWVYCDADGSQ 2610

Query: 1799 FDSSLTPYLINAVLNLRLRFMEDWDVGTQMLENLYTEIVYTPIATPDGTIVKKYKGNNSG 1620
            FDSSL+PYLINAVLN+RL FME+WD+G  ML NLYTEIVYTPI+TPDGT+VKK+KGNNSG
Sbjct: 2611 FDSSLSPYLINAVLNIRLEFMEEWDIGEVMLRNLYTEIVYTPISTPDGTLVKKFKGNNSG 2670

Query: 1619 QPSTVVDNTIMVILAMHYASGLYNSDVAITEYCV-FFVNGDDLIIAVHPDHQAFLDGLKE 1443
            QPSTVVDNT+MVILA++Y+         + +  + FFVNGDDL+++VHP+++  LD +  
Sbjct: 2671 QPSTVVDNTLMVILAVNYSLNKSGVPKDLRDNMIKFFVNGDDLLLSVHPEYEFVLDTMAG 2730

Query: 1442 SFTHLGLKYDFSNRCQSREDLWFMSHKAILSGDIYIPKLEEERIVSILEWDRAILPEHRL 1263
            +F  LGLKY F +R + + DLWFMSH+      I+IPKLE ERIVSILEWDR+  P HRL
Sbjct: 2731 NFRELGLKYTFDSRTRKKSDLWFMSHQGHKREGIWIPKLEPERIVSILEWDRSKEPCHRL 2790

Query: 1262 EAICASMIEAWGYPDLLYQIRRFYYWVLEQAPYNHLSQTGKAPYISEAALKNLYTN-QSS 1086
            EAICA+MIE+WGY  L ++IR+FY WVLEQAP++ L+Q GKAPYI+E AL+ LY + + +
Sbjct: 2791 EAICAAMIESWGYDKLTHEIRKFYAWVLEQAPFSTLAQEGKAPYIAETALRKLYLDKEPA 2850

Query: 1085 PSELQRYVDS-LEWNNLTGEEAVEFQGTEDESLNAG---DQTKKTSEAKGKDNKEK---- 930
              EL RY+++ LE  +   E  V  Q   +E+L+AG   +Q +   E K K+  EK    
Sbjct: 2851 QEELTRYLEAILEGYDDCTEVYVYHQA--NETLDAGATEEQKQAERERKEKERAEKERQK 2908

Query: 929  ----------ALETRPKDKDVDVGTSGIYQVPKLKAIGTKFCLPKVKGRTIVNLDHLISY 780
                      A E   +DK+V+ GTSG + VP+LK++ +K  +P+      +NLDHLI Y
Sbjct: 2909 QLALKRGKDVAQEGTERDKEVNAGTSGTFSVPRLKSLASKMRVPRFGKSVALNLDHLILY 2968

Query: 779  EPEQINLSNARATQSQFAQWYNGVKDAYELDDNSMGIVMSGLMVWCIENGTSPNINGQWT 600
             PEQ ++SN R+T+ QF  W+ GV   YEL ++ M IV++GLMVWCIENGTSPNING W 
Sbjct: 2969 TPEQTDISNTRSTKRQFDTWFEGVMADYELTEDKMQIVLNGLMVWCIENGTSPNINGMWV 3028

Query: 599  MMDGDEQVEYPLKPVVENAQPSLRQIMAHFSALAEAYIEKRNATKPYMPRYGLLRNLRDS 420
            MMDG EQVE+P+KP++++A+P+ RQIMAHFS +AEAYIEKRN  +PYMPRYGL RNL D 
Sbjct: 3029 MMDGGEQVEFPIKPLIDHAKPTFRQIMAHFSDVAEAYIEKRNQDRPYMPRYGLQRNLTDM 3088

Query: 419  SLARYAFDFYEVTSRTPPRAREAHLQMKAAAIRNSSTKMFGLDGNAGDKEEDTERHTAND 240
            SLARYAFDFYE+TSRTP RAREAH+QMKAAA+R ++  +FGLDGN G   E+TERHTA+D
Sbjct: 3089 SLARYAFDFYEMTSRTPTRAREAHIQMKAAALRGANNNLFGLDGNVGTTVENTERHTADD 3148

Query: 239  VSKNMHSLMGVR 204
            V++NMH+L+GV+
Sbjct: 3149 VNRNMHNLLGVK 3160


>ref|YP_003725718.1| polyprotein [Panax virus Y] gi|298155391|gb|ADI58756.1| polyprotein
            [Panax virus Y]
          Length = 3089

 Score = 2982 bits (7730), Expect = 0.0
 Identities = 1517/2938 (51%), Positives = 2044/2938 (69%), Gaps = 33/2938 (1%)
 Frame = -1

Query: 8918 LVRAVANIQKRTGVVIELISNRRK---VTANRLLKDNKRYVRVVTKHELGYRHKCDVRTG 8748
            L++ V+ I ++  + + +I  ++K   +  N L +   +Y++V+TKHELG R + DV   
Sbjct: 166  LMKQVSAIIRQNNLAVNVIGQKKKRRALNGNVLQRKEGKYLKVITKHELGVRARKDVLCD 225

Query: 8747 QWDRIVLKQLVEKSSGRLKHRA---DEFTPGSSGIALLSDKIDGQVSTSRGGVFIIRGRD 8577
            ++ +  ++ +   SS  LK R    +    G SGI L    + G++     G+FIIRGR 
Sbjct: 226  EFQQECIRTI---SSSILKKRVFHENVADKGYSGIVLPQQSVQGKIGRCINGLFIIRGRH 282

Query: 8576 GSKLYDSQCVVTTHVAARMHHYS-VSERFWKGYDRGF-QMARGPTDHTCDSNLDVEECGL 8403
               L +S   +T  V  R+ HYS   ++F+  +   F        DH C +++ VE+CG 
Sbjct: 283  EGILLNSLSKLTESVTLRIIHYSSTGDKFFNSFATTFVNNVPKNLDHACHTDVPVEDCGT 342

Query: 8402 VAAIATQALFPCGKITCQQCVDKFTSSGKSELREEHSARLEELIGRIQKNHPKFKHVIQX 8223
            VAA+ TQ +F CGKITC +C D +T+    E+R++ +  +   I  I+   PKF +V++ 
Sbjct: 343  VAALLTQTIFRCGKITCLRCADNYTACSAEEIRDKVNQEIGGTINTIETKFPKFGNVVRF 402

Query: 8222 XXXXXXXXXXXXXNVDQFSEVNRMIGERQETPFKQLADLNNLMIKIGSCTSEEVALGTAK 8043
                         N+ +F+E +++IG     PFK +  LN ++IK    T+EE+   +  
Sbjct: 403  LKDYDHMINMVNPNIKKFNETHQLIGSMTIEPFKYINRLNAIIIKGNRMTAEELGEASDC 462

Query: 8042 ILEIVRFQRNRTDNIAKGSLAHFRNKVSSKVHVNLDLMCDNQLDDDGNFRWRQRAYHAKR 7863
            IL + RFQ+NRTDNI  GSL HFRNKVS K  +N  LMCDNQLD +GNF W QR YHAKR
Sbjct: 463  ILSLARFQKNRTDNIQSGSLLHFRNKVSGKTTMNFSLMCDNQLDKNGNFIWGQRGYHAKR 522

Query: 7862 LFSNFFDVIDPANGYDQFIKRKNPNGMRKTAIGNLIVSTNMQTFRQQMRGEPMESVPLSN 7683
             FSN+F+ I+P  GYD++  R  PNG R  AI NLIVSTN++  R QM+GE ++   LS+
Sbjct: 523  FFSNYFETIEPKQGYDKYQIRNGPNGTRTLAIKNLIVSTNLEVLRNQMKGEYVKQPDLSD 582

Query: 7682 ACTSRLKGGFVYPCCCVTTDEGTPIESDMMIPTKDHLVIGNTGDSKFVNMP-RMVEGMYI 7506
             C SR  G F+YPCCCVTTD G P+ES  + PTK+HLVIGNTGDSKFV++P    EG+YI
Sbjct: 583  QCVSRASGDFIYPCCCVTTDAGKPLESHTLKPTKNHLVIGNTGDSKFVDLPAEEQEGLYI 642

Query: 7505 AKQGYCYVNIFLAMLINVSDAQSKDYTKKVRDIVIP-KLGEWPTLLDVATMCHFLTVFYP 7329
            AK GYCYVNIFLAML+NV++  +KD+TK VRD+VI  +LG+WPTL+DVAT CH LTVF+P
Sbjct: 643  AKDGYCYVNIFLAMLVNVNEVGAKDFTKMVRDLVIENELGKWPTLMDVATACHLLTVFHP 702

Query: 7328 DVKSAELPRILVDHRNQIMHVIDSFGSLTTGYHILKANTVGQLVKFSNDELQSEMMHYRV 7149
            +  +AELPRILVDH  + MHVIDS+GS TTGYHILKANTV QL++F++  L SEM  Y+V
Sbjct: 703  ETSNAELPRILVDHNLKTMHVIDSYGSKTTGYHILKANTVSQLIRFADLSLNSEMKFYKV 762

Query: 7148 GGTMMSEESSEDAAVTLLARGVYRPTELKRVLEKDPLLLVYGLLSPRVLIAMHKSKTLEM 6969
            GG    E + +D ++TLL + +YRP  +K +L ++P LL+  +LSP VL+A+  S +LE 
Sbjct: 763  GGLKDFETTRDDLSLTLLIKSIYRPKLMKEILTEEPYLLILSVLSPSVLLALFNSGSLEK 822

Query: 6968 ALDQWLHKDTSVANLCQMIDVLAKKVSVSKLFRTQQQIISENAMEIARCVDRCRTTSPSR 6789
            A   WL +D ++A++  M+  LA KV++++    Q   I+++A  +   V   R T P+ 
Sbjct: 823  ATHMWLKRDQNIAHIITMLSSLAGKVTLARTINEQLVTINKHAPALMDGV--FRGTRPNA 880

Query: 6788 TFVQL--VLTRLVESRN-TSKELLSAGFQTLMYEGEEMREKKFSEVLAHSWRDLNWSQRC 6618
            +++Q   VLTR +E+RN T  +L + GFQ L  +  E  EK +   L  SW  L+   + 
Sbjct: 881  SYMQAINVLTR-IEARNCTDAQLDAYGFQVLPSKLAETTEKIYISELEASWAGLSLCGKL 939

Query: 6617 SAIWHSRKASQHATNSSIEPEQTDSGETWTERFICLRGKLTSHVKVWTTSALSNGKRKAY 6438
            SA+  + +  +  +      +  D G  +      L G+  + V      +    K  A 
Sbjct: 940  SAMREAYRWRKFISRPLTPSKSADLGGRYDISLTSLLGRSRNFVSSGMKRSTERLKSHAI 999

Query: 6437 ETCGKVVCKLITSTKFFCPDIIKMVNVLSVFCLLLQISTVVNRHLLQYRILKEEQQNMRD 6258
                +V  K +       P ++ ++N L +   L+Q+ +     + ++R  K +  +   
Sbjct: 1000 TITRRVYSKSLDLLLNMIPSVLYLINSLLILNALVQMISTCQHMIKEHRSNKLQILDNEF 1059

Query: 6257 DKDFETMMGIYNLYVKTYEGEYPTLKQFSTYLQKVNPQIYAYYERTMGEPDDTDECVELQ 6078
            ++  + +   YN  V  Y+ E PT ++F  +L+  + +++ + +   GE    +E V  Q
Sbjct: 1060 NRKCDLLEVEYNKLVSKYD-EIPTWEEFLEHLRFYSKELHDFAKEYQGE---LEEPVCHQ 1115

Query: 6077 AKGKGEIELERTIAFVALIMMMFDAERSDCVYKVLNKLRGIMNPISAETVAFQGLDDMKE 5898
            AK   E+ LE+ +AFVALI+M+FD+E+SDCVYKVL+KL+ +M+ I+  +V  Q +D++K 
Sbjct: 1116 AKRNSEVRLEQAMAFVALILMIFDSEKSDCVYKVLSKLKNLMS-IADTSVFHQSVDEIKS 1174

Query: 5897 LLGETKMAIDIELDTENHQLNRLGGVTFGDWWTHQLNQNRTVPHYRTEGKFVEFTRANAM 5718
             + E K  ID  LD       R    TF DWW +Q+     V HYRTEG F EFTR NA 
Sbjct: 1175 EIDEKKFTIDFTLDDTFTPSIRNSEPTFEDWWHNQIESTNVVSHYRTEGHFYEFTRQNAA 1234

Query: 5717 IVANEIAHSDQTDFLVMGAVGSGKSTGLPFHLSRKGKVLMIEPTKPLAENVHKQLKGNPF 5538
             VA++I+   + D L+ GAVGSGKSTGLP+ LS++G VL++EPT+PLAENV KQL+ +PF
Sbjct: 1235 DVASKISKGSEKDILLRGAVGSGKSTGLPYELSQRGSVLLLEPTRPLAENVLKQLQKDPF 1294

Query: 5537 MSNATLRMRGCSVFGSSPITVMTSGYALHYFAHNIAQLAEYQFVIIDECHVHDASAMAFR 5358
              N TLRMRG SVFGSS +T+MTSG+ALH+FA+N+ QL +Y ++I DECHV D++AMAFR
Sbjct: 1295 YLNPTLRMRGMSVFGSSRVTIMTSGFALHFFANNMEQLRDYNYIIFDECHVLDSAAMAFR 1354

Query: 5357 CLLLEYDYQGKVLKVSATPPGREATFNTQHPVLVKMEESLSFQQFVALQGSGANGDITQN 5178
            CLL +  Y G V+KVSATPPGRE  F+TQHPV +++EESLSFQ FV  QG+G N D+ ++
Sbjct: 1355 CLLHDTKYGGMVIKVSATPPGRECEFSTQHPVDLRIEESLSFQSFVQGQGTGCNYDVIKD 1414

Query: 5177 GDNILIYVASYNEVDTLSKMLLDKNHKVTKVDGRTMKMGQVEIPTAGTKEKKHFIVATNI 4998
            G+NIL+YVASYNEVDTLSK+LL++  KVTKVDGRTMK+G VEI T+GT+++KHFIVATNI
Sbjct: 1415 GNNILVYVASYNEVDTLSKLLLERKFKVTKVDGRTMKLGNVEIVTSGTEKQKHFIVATNI 1474

Query: 4997 IENGVTLDIDVVVDFGMKVVPELDIDNRLIRYSKVAISYGERIQRLGRVGRNKEGVALRI 4818
            IENGVT+DIDVVVDFG KV+P LD+DNR++ Y+KV+IS GERIQRLGRVGR K G ALRI
Sbjct: 1475 IENGVTIDIDVVVDFGTKVMPTLDVDNRMVNYNKVSISLGERIQRLGRVGRTKRGTALRI 1534

Query: 4817 GVTEKGLSAVPNVTATEAAFYCFAYGLPVMTSGVAVSMLSNCTVNQARTMMHFELPLFYM 4638
            G TEKGL  +P + ATEAAF+CFAYGLPVMT  V  S+L +CTV QAR MM+FE+ +FY 
Sbjct: 1535 GHTEKGLMDIPPLIATEAAFFCFAYGLPVMTHNVTTSLLKSCTVRQARVMMNFEMSIFYT 1594

Query: 4637 VHMVRFDGSMHPELHKCLKDYKLRDSEIILNKMAIPSSGVKSWMTAGEYSRLGARNSIEE 4458
            +++VR+DG MHP++H+ LK +KLRDSE+ILN MAIP+   ++W T  EY+++GAR +IE+
Sbjct: 1595 INLVRYDGCMHPKIHETLKKFKLRDSEVILNTMAIPTRSHETWTTVREYNKMGARLNIED 1654

Query: 4457 FVRIPFYARDIPDKVHERVWEVVVTFKRDAGFGKIQSASACKVAYTLQTDAASIPRTICI 4278
             VRIPF   DIP+K HE +W  + T+K+D  F KI SASACK+ YTLQTD  +IPRT+ I
Sbjct: 1655 AVRIPFLMNDIPEKTHEEIWNALCTYKKDNAFNKITSASACKIGYTLQTDIFAIPRTLSI 1714

Query: 4277 IEELIKNEVKKQEYFQVASGVDCGSG-FSLINITNALRSRHMSNHTAENIAILEAAKNQI 4101
            I++LI+ E  K+ +F+     +C  G  + +++ NA+RS++  ++T EN+  L+ AK Q+
Sbjct: 1715 IDKLIEGEHMKRAHFKSLMANNCSIGNATFMSLFNAVRSKYAQDYTQENLEKLQRAKCQL 1774

Query: 4100 YEFRNLGIDPS-SKTVCDFGALECVQFQSAEGVSKQLKLKGHWNKSLITKDLLVAGFTLF 3924
             EF NLG + +    + +F AL+CV  QS+ G+S  L LKG WNKS ITKD++V G  L 
Sbjct: 1775 LEFANLGSETNFPDLIRNFSALDCVTHQSSGGISNSLGLKGLWNKSAITKDVVVIGGLLV 1834

Query: 3923 GGLWMLYNHFKRAATTLVEFQASGKRQSQKRRFQIARNHKHAYEVNPDQTDVEHYFGEAY 3744
            GG WM Y  FK +    V  Q   KRQ QK +F+  R+ +   EV  D   +  YFGEAY
Sbjct: 1835 GGAWMTYTWFKESYYQPVFHQGYNKRQRQKLQFRNTRDARMTREVFGDDNVIGDYFGEAY 1894

Query: 3743 AKKPQQKGRTKGMGAKSRRFYNIYGFDPAEYTFARYVDPLTGYTLDENALTDARLVQEHF 3564
             KK ++ G+T GMG K+ RF N+Y +D  +++F RYVDPLTGYTLDE+ LTD RLV E  
Sbjct: 1895 TKKGKKSGKTHGMGKKNHRFVNMYSYDADDFSFVRYVDPLTGYTLDEHPLTDMRLVMEQL 1954

Query: 3563 GKIRLELREQDKLDAQALMANQKIEAYFVKDLAKQILKIDMTPHRPLELGCKTSTIAGYP 3384
             K R +    D+LD Q +     IEAYF K   K+ +KID+ PH PL++ C   TIAG+P
Sbjct: 1955 FKARAQAINDDELDTQTIRLKPGIEAYFQKGATKEAIKIDLMPHNPLQV-CNKGTIAGFP 2013

Query: 3383 EREGELRQAAPHVIVDASVLPKQNEYTSEGAEFESKATYQGLRDYNSISSSICLLENDSD 3204
            ERE ELRQ    +I+ AS +PK   +  E    E ++ ++G+RDYN I+S+ICLL N+SD
Sbjct: 2014 EREFELRQTGKPIILPASAIPKAKPF-EEDTVHEGESLFKGVRDYNPIASTICLLTNESD 2072

Query: 3203 GYTMKIHGIGFGSMIITNQHLFKRNNGSLKIQSHRGEFLVPNTTQLKMYPFEGRDLLLIQ 3024
            G++ ++ GIG+G MIITNQHLF+RNNG+L+IQSH GE++VPNTT L+MYP  GRD++LI+
Sbjct: 2073 GHSERLFGIGYGCMIITNQHLFERNNGTLRIQSHHGEYIVPNTTALQMYPCSGRDVVLIR 2132

Query: 3023 MPKDFPPFPQKLKFRLPVSGERVCLIGSNFQEKYISSTVSESSVIAQKDNTSFFRHWITT 2844
            +PKDFP FPQ+LKFR P + ERVC++ SNFQ K  SSTVSE+S I  ++ + F++HWI+T
Sbjct: 2133 LPKDFPTFPQRLKFREPRNNERVCMVSSNFQNKSTSSTVSETSTIHPQEGSHFWKHWIST 2192

Query: 2843 QKGHCGLPLVSVKDGHILGIHSMTSLEDSSSFFISLPPDIGPKYLQNEENIEWTKKWRLN 2664
            + G+CGLPLVS  DG I+G+HS++++  + ++F   P +    YL+  EN  W + W+ N
Sbjct: 2193 KDGYCGLPLVSTSDGFIVGLHSLSNMSRTQNYFTDFPENFENTYLKTSENHNWVRHWKYN 2252

Query: 2663 LELINWGAFKLSNEKPDNLFKLSKDIFELLDEPVDFQAKEGGWLYDRLGGNITAMARTSN 2484
             + + +G+ KL    PD LF+  K + EL DE V  Q+ +GGWLYD+L GN+ A+ R+ +
Sbjct: 2253 ADNVGYGSLKLHESTPDGLFRPVKMVRELGDEAVFNQSIKGGWLYDKLHGNLKAIGRSDS 2312

Query: 2483 QLVTKHVVKGQCLLFQTYLETHPEASNFFKPLMGFYQKSRLNKEAYIKDLFKYNAPTTVG 2304
            QLVTKHVV G+C+LF+TYL+THPEA+N FKPLMG+YQKS LNKEAYIKDLFKY +P  VG
Sbjct: 2313 QLVTKHVVNGKCVLFETYLQTHPEAANKFKPLMGYYQKSNLNKEAYIKDLFKYTSPIVVG 2372

Query: 2303 VLNPHVFELAEESVYNMFVGIGFQKCVYVTDQEAIFSALNMKAATGALYQGKKKEYFENF 2124
            +L+ ++FE A + V +     GF++C YVTD  AIFS+LNMKAA GALYQGKK++YF N+
Sbjct: 2373 ILDTNLFEKALDCVISRMEQAGFEECDYVTDSAAIFSSLNMKAAVGALYQGKKQDYFSNY 2432

Query: 2123 TEADKAQILKDSCFRLYTGKLGVWNGSLKAELRPLEKVQANKTRSFTAAPIDTLLGGKVC 1944
            T  DK  IL+ SC RLY GKLG+WNGSLKAELRP+EKVQ NKTRSFTAAP+DTLL GKVC
Sbjct: 2433 TSEDKDTILEQSCRRLYEGKLGIWNGSLKAELRPIEKVQENKTRSFTAAPLDTLLAGKVC 2492

Query: 1943 VDDFNNQFYSLNLKAPWSVGMTKFYGGWNTLIRSLPEGWIYCDADGSQFDSSLTPYLINA 1764
            VDDFNNQFYS++ K PWSVGMTKFY GWNTL+R LP  W+YCDADGSQFDSSL+PYLINA
Sbjct: 2493 VDDFNNQFYSMHFKCPWSVGMTKFYTGWNTLLRKLPNDWVYCDADGSQFDSSLSPYLINA 2552

Query: 1763 VLNLRLRFMEDWDVGTQMLENLYTEIVYTPIATPDGTIVKKYKGNNSGQPSTVVDNTIMV 1584
            +L LRL FME +D+G  ML NLYTEI+YTPI TPDGTIVKK+KGNNSGQPSTVVDNT+MV
Sbjct: 2553 ILQLRLHFMEPFDIGEVMLSNLYTEIIYTPILTPDGTIVKKFKGNNSGQPSTVVDNTLMV 2612

Query: 1583 ILAMHYASGLYNSDVAI---TEYCVFFVNGDDLIIAVHPDHQAFLDGLKESFTHLGLKYD 1413
            ++AM YA  L     A     E C +FVNGDDL++AVHP+H++ LD L + F  LGLKY 
Sbjct: 2613 VIAMTYA--LLKMGFAAELHDEVCQYFVNGDDLLLAVHPEHESLLDSLSDIFQQLGLKYT 2670

Query: 1412 FSNRCQSREDLWFMSHKAILSGDIYIPKLEEERIVSILEWDRAILPEHRLEAICASMIEA 1233
            F +R +++E+LWF SH+ +L GD+YIPKLEEERIVSILEWDR+I+PEHRLEAICA+MIE+
Sbjct: 2671 FESRTRNKEELWFTSHRGVLKGDLYIPKLEEERIVSILEWDRSIVPEHRLEAICAAMIES 2730

Query: 1232 WGYPDLLYQIRRFYYWVLEQAPYNHLSQTGKAPYISEAALKNLYTN-QSSPSELQRYVDS 1056
            WGY  L  +IR FY WVLEQAPYN +++ GKAPYISE AL+ LYT+ Q    E+  Y + 
Sbjct: 2731 WGYEWLTNEIRHFYSWVLEQAPYNEIAKIGKAPYISEMALRRLYTSEQVDEREILEYFNR 2790

Query: 1055 LEWNNLTGEE--AVEFQGTEDESLNAGDQTKKTSEAKGKDNKEKALETRP---------- 912
                 L  E+   V  QG +  +++AGD +  +S+ K   NK+K  +  P          
Sbjct: 2791 FLDLELDDEDDLRVIHQGDKTTTMDAGDSSGDSSK-KNDKNKDKQQQLTPTSDQNKSISN 2849

Query: 911  --KDKDVDVGTSGIYQVPKLKAIGTKFCLPKVKGRTIVNLDHLISYEPEQINLSNARATQ 738
              KDKDVD G+SG Y+VPKLKAI  K  +PK   +  +NL+ L++Y P+QI+++N R+TQ
Sbjct: 2850 PNKDKDVDAGSSGTYRVPKLKAITAKMRVPKYNNKNSMNLEFLLNYSPDQIDITNTRSTQ 2909

Query: 737  SQFAQWYNGVKDAYELDDNSMGIVMSGLMVWCIENGTSPNINGQWTMMDGDEQVEYPLKP 558
            +Q+  WY GVK+ Y++ D  M +++SGLMVWC+ENGTSPN+NG WTMMDG+EQ EYP+KP
Sbjct: 2910 AQYQAWYEGVKNDYDVSDQDMEVLLSGLMVWCLENGTSPNLNGMWTMMDGEEQREYPIKP 2969

Query: 557  VVENAQPSLRQIMAHFSALAEAYIEKRNATKPYMPRYGLLRNLRDSSLARYAFDFYEVTS 378
            ++++A+P+ RQIM HFS +A AYIE RN  KPYMP YGL RNLRD SLA YAFDFYE+TS
Sbjct: 2970 LIDHAKPTFRQIMHHFSDVAVAYIEMRNTKKPYMPGYGLKRNLRDRSLACYAFDFYEMTS 3029

Query: 377  RTPPRAREAHLQMKAAAIRNSSTKMFGLDGNAGDKEEDTERHTANDVSKNMHSLMGVR 204
             +P RAREAHLQMKAAA++NS T++FGLDG+   KEEDTERHT  DV++NMHSL+G++
Sbjct: 3030 SSPERAREAHLQMKAAALKNSRTRLFGLDGSVSSKEEDTERHTVEDVNRNMHSLLGMQ 3087


>gb|AAN40503.1| polyprotein [Potato virus A]
          Length = 3059

 Score = 2982 bits (7730), Expect = 0.0
 Identities = 1514/2928 (51%), Positives = 2029/2928 (69%), Gaps = 18/2928 (0%)
 Frame = -1

Query: 8933 YDWLNLVRAVANIQKRTGVVIELISNRRKVTANRLLKDNKRYV-RVVTKHELGYRHKCDV 8757
            Y    L R + N+ KRTG+ +E++    K T  R  K +  Y+ RV  KH  G  H+ D+
Sbjct: 158  YSVQQLCRTLGNLSKRTGISLEVVGKTSKATKLRFTKTSFGYMARVQLKHHDGRMHRRDL 217

Query: 8756 RTGQWDRIVLKQLVEKSSGRLKHRADEFTPGSSGIALLSDKIDGQVSTSRGGVFIIRGRD 8577
                    +++ L  K++ R     D  T GSSG+   +  + GQ   +R    I+RGR 
Sbjct: 218  VVDTSTTTIMQTLFLKTA-RTNANLDVLTHGSSGLVFWNYLVTGQRMRTRDNFIIVRGRC 276

Query: 8576 GSKLYDSQCVVTTHVAARMHHYSVSERFWKGYDRGFQMARGPT--DHTCDSNLDVEECGL 8403
               L D++  ++       HHYS  + FW+G++R F +   P   DH C S+  VEECG 
Sbjct: 277  NGILVDARAKLSESTMLSTHHYSTGDVFWRGFNRTF-LENKPINLDHVCSSDFSVEECGS 335

Query: 8402 VAAIATQALFPCGKITCQQCVDKFTSSGKSELREEHSARLEELIGRIQKNHPKFKHVIQX 8223
            +AA+  Q+L PCGKITC+ C  K  +  +   +E  + R  E+   I   +P F  V Q 
Sbjct: 336  IAALICQSLLPCGKITCRACAAKNLNMDEDTFKEFQTQRAREISAVIISKYPNFACVSQF 395

Query: 8222 XXXXXXXXXXXXXNVDQFSEVNRMIGERQETPFKQLADLNNLMIKIGSCTSEEVALGTAK 8043
                         NV+ + E+ +++G   ++P+  + +LN +++  G  T E+++  +A 
Sbjct: 396  IDRYFSHQRVLNPNVNAYREILKIVGGFTQSPYTHIQELNEILVLGGRATPEQLSSASAH 455

Query: 8042 ILEIVRFQRNRTDNIAKGSLAHFRNKVSSKVHVNLDLMCDNQLDDDGNFRWRQRAYHAKR 7863
            +LEI RF RNRTDNI KGSLA FRNK+S+K HVN  LMCDNQLD +GN  W +R YHAKR
Sbjct: 456  LLEITRFVRNRTDNIKKGSLALFRNKISAKAHVNTALMCDNQLDRNGNLIWGERGYHAKR 515

Query: 7862 LFSNFFDVIDPANGYDQFIKRKNPNGMRKTAIGNLIVSTNMQTFRQQMRGEPMESVPLSN 7683
             FSN+FD+I P  GY Q+I+R+ PNG+RK AIGNLIV+TN++  R+Q+ GE +E   ++ 
Sbjct: 516  FFSNYFDIITPGGGYKQYIERRVPNGIRKLAIGNLIVTTNLEALREQLEGESIEKKAVTK 575

Query: 7682 ACTSRLKGGFVYPCCCVTTDEGTPIESDMMIPTKDHLVIGNTGDSKFVNMPRMVEG-MYI 7506
            AC S     + YPCCCVT D+GTP+ S  ++PTK+HLVIGN+GD KF+++P  +   MYI
Sbjct: 576  ACVSMSDNNYKYPCCCVTLDDGTPLYSTFIMPTKNHLVIGNSGDPKFLDLPTDISTQMYI 635

Query: 7505 AKQGYCYVNIFLAMLINVSDAQSKDYTKKVRDIVIPKLGEWPTLLDVATMCHFLTVFYPD 7326
            AK GYCY+NIFLAML+NV ++ +KD+TKKVRDI++P LGEWPTL+DVAT C  L+ FYP 
Sbjct: 636  AKSGYCYINIFLAMLVNVDESDAKDFTKKVRDIIVPDLGEWPTLIDVATSCSLLSAFYPA 695

Query: 7325 VKSAELPRILVDHRNQIMHVIDSFGSLTTGYHILKANTVGQLVKFSNDELQSEMMHYRVG 7146
              +AELPRILVDH  + MHVIDS+GSL TGYH+LKANTV QL++F+++ L SEM HYRVG
Sbjct: 696  TSAAELPRILVDHDLKTMHVIDSYGSLNTGYHVLKANTVRQLIQFASNSLDSEMKHYRVG 755

Query: 7145 GTMMSEESSEDAAVTLLARGVYRPTELKRVLEKDPLLLVYGLLSPRVLIAMHKSKTLEMA 6966
            GT  S+ +   A + +LA+ VYRP  +K ++ + P +LV  L+SP +LIA+  S  LEM 
Sbjct: 756  GTPNSQINGY-ATIKMLAKAVYRPKLMKEIIHEQPYMLVMSLMSPGILIALANSGALEMG 814

Query: 6965 LDQWLHKDTSVANLCQMIDVLAKKVSVSKLFRTQQQIISENAMEIARCVDRCRTTSPSRT 6786
            +  W+ +  S+  +  M+  +A+ VSV++    QQ+IIS++A ++   +     T P+ +
Sbjct: 815  IHHWIREGDSLVKMAHMLRTVAQNVSVARATWVQQEIISDSAQQMLETI--LNGTIPNVS 872

Query: 6785 FVQLV--LTRLVESRNTSKELLSAGFQTLMYEGEEMREKKFSEVLAHSWRDLNWSQRCSA 6612
            + Q +  LT L  S+    E+   G+ T   +  E+ EK +  +L  SW++L++  R  A
Sbjct: 873  YFQAIQYLTMLAASKEVDAEVRVTGYYTFKLQTSELLEKTYLSLLEDSWQELSYFGRFQA 932

Query: 6611 IWHSRKASQHATNSSIEPEQ-TDSGETWTERFICLRGKLTSHVKVWTTSALSNGKRKAYE 6435
            I HSR+     T   ++PE+  D G  +   +     K   + K     A++  + +   
Sbjct: 933  IRHSRRYCTAGT-IVVKPERHVDLGGIYATSYQFALAKQMEYSKKAVCQAVNGLQARFNN 991

Query: 6434 TCGKVVCKLITSTKFFCPDIIKMVNVLSVFCLLLQISTVVNRHLLQYRILKEEQQNMRDD 6255
               ++ CK++   K   PD++K +N +    + LQ+       L  ++  K++   +   
Sbjct: 992  ITSQIYCKILNWPKRLFPDLVKFINTMLAITVALQLYIAFATILRHHQQCKQDSLELEYC 1051

Query: 6254 KDFETMMGIYNLYVKTYEGEYPTLKQFSTYLQKVNPQIYAYYERTMGEPDDTDECVELQA 6075
            K    ++ +Y+ ++   +  Y T ++F  ++ + NP +  +      E       V  QA
Sbjct: 1052 KKERQLITLYDFFIA--KQPYATEEEFMAHVDEQNPDLSNFAREYCAE------VVLFQA 1103

Query: 6074 KGKGEIELERTIAFVALIMMMFDAERSDCVYKVLNKLRGIMNPISAETVAFQGLDDMKEL 5895
            K   ++  ER IAF++L++MMFD ERSDCVY+ L KL+ +M+ +   TV FQ LDD+   
Sbjct: 1104 KASEQVNFERIIAFISLVLMMFDCERSDCVYRSLTKLKSLMSTVE-NTVQFQSLDDIGPT 1162

Query: 5894 LGETKMAIDIELDTENHQLNRLGGVTFGDWWTHQLNQNRTVPHYRTEGKFVEFTRANAMI 5715
            L E  M ID +LDT+      + G TF +WW  QLN NR VPHYRTEG F+EFTRANA  
Sbjct: 1163 LEEKNMTIDFDLDTDTIVGKSIVGHTFKEWWDVQLNTNRIVPHYRTEGHFMEFTRANAPT 1222

Query: 5714 VANEIAHSDQTDFLVMGAVGSGKSTGLPFHLSRKGKVLMIEPTKPLAENVHKQLKGNPFM 5535
            +A++I+H   TD ++ GAVGSGKSTGLP+HLS+KG VL++EPT+PLAENV KQLK +PF 
Sbjct: 1223 IAHQISHDLHTDIMLRGAVGSGKSTGLPYHLSKKGTVLLLEPTRPLAENVTKQLKSDPFH 1282

Query: 5534 SNATLRMRGCSVFGSSPITVMTSGYALHYFAHNIAQLAEYQFVIIDECHVHDASAMAFRC 5355
             + TLRMRG +VFGS+PI VMT+G+ALHY A+N+  L  Y F+IIDE HVHD++A+A R 
Sbjct: 1283 VSPTLRMRGMAVFGSTPIHVMTTGFALHYLANNLKMLGTYDFIIIDEFHVHDSNAIALRN 1342

Query: 5354 LLLEYDYQGKVLKVSATPPGREATFNTQHPVLVKMEESLSFQQFVALQGSGANGDITQNG 5175
            LL E++YQGK++KVSATPPGRE  F+TQ+PV +++E+ +SFQ FV  QG+G+N D+T   
Sbjct: 1343 LLYEHNYQGKLIKVSATPPGREVEFSTQYPVEIRVEDQVSFQDFVKAQGNGSNLDLTSKC 1402

Query: 5174 DNILIYVASYNEVDTLSKMLLDKNHKVTKVDGRTMKMGQVEIPTAGTKEKKHFIVATNII 4995
            DN+L+YVASYNEVD LSK+LL+++  VTKVDGR+MK+GQVEI T G+  KKHFIVATNII
Sbjct: 1403 DNLLVYVASYNEVDQLSKLLLERHFLVTKVDGRSMKLGQVEIITKGSANKKHFIVATNII 1462

Query: 4994 ENGVTLDIDVVVDFGMKVVPELDIDNRLIRYSKVAISYGERIQRLGRVGRNKEGVALRIG 4815
            ENGVTLDID V+DFGMKVVP LD DNR+I Y+KV+ISYGERIQRLGRVGRNK GVALRIG
Sbjct: 1463 ENGVTLDIDAVIDFGMKVVPFLDSDNRMISYNKVSISYGERIQRLGRVGRNKAGVALRIG 1522

Query: 4814 VTEKGLSAVPNVTATEAAFYCFAYGLPVMTSGVAVSMLSNCTVNQARTMMHFELPLFYMV 4635
             TEKG+S VP V AT+AAF CF YGLP+ T  V   +LSN T+ QARTM+ FELP+FYM 
Sbjct: 1523 HTEKGISDVPVVIATQAAFLCFVYGLPISTQSVTTQVLSNVTLKQARTMVQFELPIFYMA 1582

Query: 4634 HMVRFDGSMHPELHKCLKDYKLRDSEIILNKMAIPSSGVKSWMTAGEYSRLGARNSIEEF 4455
            H+VR+DG+MHP +H  LK YKLRDSEI L+K+AIPS  V  WMT   Y  L   +   + 
Sbjct: 1583 HLVRYDGTMHPAIHNELKKYKLRDSEIQLSKLAIPSKCVPIWMTGKAYRLLTHNSQTPDA 1642

Query: 4454 VRIPFYARDIPDKVHERVWEVVVTFKRDAGFGKIQSASACKVAYTLQTDAASIPRTICII 4275
            VR+PF  ++IPDK+HE VW +V  FK DAG G++ SA A KVAYTL+TD  SI RTI II
Sbjct: 1643 VRVPFLTKEIPDKLHENVWAIVEKFKCDAGIGRMTSAQASKVAYTLETDIHSIQRTILII 1702

Query: 4274 EELIKNEVKKQEYFQVASGVDCGSGF-SLINITNALRSRHMSNHTAENIAILEAAKNQIY 4098
            ++L++ E++KQ +F++ +   C SG  SL  + NA++SR+  NHTA NI IL+ AK Q+ 
Sbjct: 1703 DQLLEREMQKQSHFEMVTNQSCSSGMSSLQTMMNAIQSRYAKNHTAGNIEILQRAKAQLL 1762

Query: 4097 EFRNLGIDPSSKTVC-DFGALECVQFQSAEGVSKQLKLKGHWNKSLITKDLLVAGFTLFG 3921
            EF NL  D  +++   +FG LE VQFQS   VS  L L+GHW KSLITKDLL+ G    G
Sbjct: 1763 EFSNLSGDILTESALREFGYLEAVQFQSGTQVSNFLGLEGHWKKSLITKDLLIVGGVCVG 1822

Query: 3920 GLWMLYNHFKRAATTLVEFQASGKRQSQKRRFQIARNHKHAYEVNPDQTDVEHYFGEAYA 3741
              WM+  +F + +  +V FQ   KRQ QK +F  AR+ K  + V    + +EHYFG AY 
Sbjct: 1823 AAWMIGEYFFKKSKEVVAFQGYNKRQRQKLKFARARDEKMGHYVEAPDSTLEHYFGSAYT 1882

Query: 3740 KKPQQKGRTKGMGAKSRRFYNIYGFDPAEYTFARYVDPLTGYTLDENALTDARLVQEHFG 3561
            KK + KG+T GMG K+ RF N+YGFDP++YTF RYVDPLTGYTLDE+  TD RL+Q  F 
Sbjct: 1883 KKGKTKGKTHGMGKKNHRFVNMYGFDPSDYTFIRYVDPLTGYTLDESPYTDIRLIQSQFS 1942

Query: 3560 KIRLELREQDKLDAQALMANQKIEAYFVKDLAKQILKIDMTPHRPLELGCKTSTIAGYPE 3381
             IR +    D+L+   +     ++ Y VKD   QILKID+TPH PL++   T+ IAG+P+
Sbjct: 1943 DIREQQLLNDELERNMVYHKPGVQGYLVKDKTSQILKIDLTPHIPLKVCDTTNNIAGHPD 2002

Query: 3380 REGELRQAAPHVIVDASVLPKQNEYTSEGAEFESKATYQGLRDYNSISSSICLLENDSDG 3201
            REGELRQ     ++D + LP++ E      EFES + ++G+RDYN ISS IC LEN+S+G
Sbjct: 2003 REGELRQTGKGQLLDYAELPQKKEL----VEFESTSMFRGVRDYNPISSVICQLENESEG 2058

Query: 3200 YTMKIHGIGFGSMIITNQHLFKRNNGSLKIQSHRGEFLVPNTTQLKMYPFEGRDLLLIQM 3021
             T ++ G+GFG  IITNQHLF RNNGSL ++S  G F V +T  L+M P EGRD+L+I+M
Sbjct: 2059 RTTQLFGLGFGPFIITNQHLFVRNNGSLTVRSQMGVFKVNSTVTLQMRPVEGRDVLIIKM 2118

Query: 3020 PKDFPPFPQKLKFRLPVSGERVCLIGSNFQEKYISSTVSESSVIAQKDNTSFFRHWITTQ 2841
            PKDFPPFPQ+LKFR P   E+VCLI +NFQ+K  SS VSE+S I  K+NT F++HWI+T+
Sbjct: 2119 PKDFPPFPQRLKFRQPTHSEKVCLILTNFQQKSSSSMVSETSHIIPKENTYFWKHWISTK 2178

Query: 2840 KGHCGLPLVSVKDGHILGIHSMTSLEDSSSFFISLPPDIGPKYLQNEENIEWTKKWRLNL 2661
            +GHCG P+VS  DG ILGIHS++++ ++S++F   P      YL  E   EW K W+ N 
Sbjct: 2179 EGHCGSPIVSTTDGAILGIHSLSNMTNTSNYFACFPKGFTETYLATESVHEWVKGWKFNA 2238

Query: 2660 ELINWGAFKLSNEKPDNLFKLSKDIFELLDEPVDFQAKEGGWLYDRLGGNITAMARTSNQ 2481
              + WG+F L + KP   FK  K + +LL E V  Q  +  WL++    NI A+A+  + 
Sbjct: 2239 SNVCWGSFHLQDSKPTKEFKTVKLVTDLLGEAVYTQGCDSKWLFNAAHTNIQAVAQLESN 2298

Query: 2480 LVTKHVVKGQCLLFQTYLETHPEASNFFKPLMGFYQKSRLNKEAYIKDLFKYNAPTTVGV 2301
            LVTKH VKG+C LF+TYL     A +FF   MGFY+ S+LN+EAY +DL KY+    VG 
Sbjct: 2299 LVTKHTVKGKCKLFETYLNVDKVAHDFFSKYMGFYKPSKLNREAYTQDLMKYSKVIQVGE 2358

Query: 2300 LNPHVFELAEESVYNMFVGIGFQKCVYVTDQEAIFSALNMKAATGALYQGKKKEYFENFT 2121
            ++  VFE A   + +     GF    Y+TD+++I++ALNMKAA GALY+GKK++YF+  +
Sbjct: 2359 VDCGVFESALTGLLHNLGRWGFTTACYITDEDSIYAALNMKAAVGALYRGKKRDYFDAMS 2418

Query: 2120 EADKAQILKDSCFRLYTGKLGVWNGSLKAELRPLEKVQANKTRSFTAAPIDTLLGGKVCV 1941
             +++  +L  SC RLY G+LGVWNGSLKAELRP EKV  NKTR+FTAAPI+TLLGGKVCV
Sbjct: 2419 PSEREHLLFLSCKRLYFGQLGVWNGSLKAELRPKEKVDLNKTRTFTAAPIETLLGGKVCV 2478

Query: 1940 DDFNNQFYSLNLKAPWSVGMTKFYGGWNTLIRSLPEGWIYCDADGSQFDSSLTPYLINAV 1761
            DDFNN FYSL+LKAPWSVGMTKFYG WN L+  LP+ W+YCDADGSQFDSS++PY+INAV
Sbjct: 2479 DDFNNMFYSLHLKAPWSVGMTKFYGTWNQLMCKLPDDWVYCDADGSQFDSSISPYMINAV 2538

Query: 1760 LNLRLRFMEDWDVGTQMLENLYTEIVYTPIATPDGTIVKKYKGNNSGQPSTVVDNTIMVI 1581
            L +RL FMEDWD+G+QML+NLYTEIVYTPI+TPDGT+VKK+KGNNSGQPSTVVDNT++V+
Sbjct: 2539 LRIRLHFMEDWDIGSQMLQNLYTEIVYTPISTPDGTVVKKFKGNNSGQPSTVVDNTLLVV 2598

Query: 1580 LAMHYASGLYNSDVAITE---YCVFFVNGDDLIIAVHPDHQAFLDGLKESFTHLGLKYDF 1410
            LAMHYA  L  S V + E    CV+ VNGDDL+IA+ PD +  LDG +  F+ LGL Y+F
Sbjct: 2599 LAMHYA--LLKSGVPLEEQDSVCVYCVNGDDLLIAIRPDMEHKLDGFQALFSELGLNYEF 2656

Query: 1409 SNRCQSREDLWFMSHKAILSGDIYIPKLEEERIVSILEWDRAILPEHRLEAICASMIEAW 1230
            ++R + ++DLWFMSHKAI  G+I IPKLEEERIVSILEWDR+  P HRLEAICASM+E+W
Sbjct: 2657 NSRSKDKKDLWFMSHKAIQCGEILIPKLEEERIVSILEWDRSHEPIHRLEAICASMVESW 2716

Query: 1229 GYPDLLYQIRRFYYWVLEQAPYNHLSQTGKAPYISEAALKNLYTN-QSSPSELQRYVDSL 1053
            GYP+L ++IRRFY WVLEQ+PYN L+ TG APYI+E+ALK LYTN   + +EL++Y  S+
Sbjct: 2717 GYPELTHEIRRFYAWVLEQSPYNALATTGLAPYIAESALKTLYTNVHPTSTELEKY--SI 2774

Query: 1052 EWNNLTGEE--AVEFQGTEDESLNAGDQTKKTSEAK---GKDNKEKALETRPKDKDVDVG 888
            +++    EE   V FQ     +L+AG+   + SE +   G+ N  +A+    KDKDVD+G
Sbjct: 2775 QFDEQMDEEDDMVYFQA---GTLDAGETPAQKSEGRKKEGEGNSSRAVAV--KDKDVDLG 2829

Query: 887  TSGIYQVPKLKAIGTKFCLPKVKGRTIVNLDHLISYEPEQINLSNARATQSQFAQWYNGV 708
            T+G + VP+LK++ +K  LP +KG+++VNLDHL+SY+P+Q++LSNARAT  QF  WY+GV
Sbjct: 2830 TAGTHSVPRLKSMTSKLTLPMLKGKSVVNLDHLLSYKPKQVDLSNARATHEQFQNWYDGV 2889

Query: 707  KDAYELDDNSMGIVMSGLMVWCIENGTSPNINGQWTMMDGDEQVEYPLKPVVENAQPSLR 528
              +YEL+++SM I+++G MVWCIENGTSP+ING WTMMDG+EQV YPLKP++++A+PSLR
Sbjct: 2890 MASYELEESSMEIILNGFMVWCIENGTSPDINGVWTMMDGEEQVSYPLKPMLDHAKPSLR 2949

Query: 527  QIMAHFSALAEAYIEKRNATKPYMPRYGLLRNLRDSSLARYAFDFYEVTSRTPPRAREAH 348
            QIM HFSALAEAYIE R+  KPYMPRYGL RNLRD SLARYAFDFYE+T+ TP RA+EAH
Sbjct: 2950 QIMRHFSALAEAYIEMRSREKPYMPRYGLQRNLRDQSLARYAFDFYEITATTPIRAKEAH 3009

Query: 347  LQMKAAAIRNSSTKMFGLDGNAGDKEEDTERHTANDVSKNMHSLMGVR 204
            LQMKAAA++NS+T MFGLDGN    EEDTERHTA DV++NMH L+GV+
Sbjct: 3010 LQMKAAALKNSNTNMFGLDGNVTTSEEDTERHTATDVNRNMHHLLGVK 3057


>gb|AKI32471.1| polyprotein [Potato virus A]
          Length = 3059

 Score = 2981 bits (7729), Expect = 0.0
 Identities = 1513/2928 (51%), Positives = 2031/2928 (69%), Gaps = 18/2928 (0%)
 Frame = -1

Query: 8933 YDWLNLVRAVANIQKRTGVVIELISNRRKVTANRLLKDNKRYV-RVVTKHELGYRHKCDV 8757
            Y    L R + N+ KRTG+ +E++    K T  R  K +  Y+ RV  KH  G  H+ D+
Sbjct: 158  YSVQQLCRTLGNLSKRTGISLEVVGKTSKATKLRFTKTSFGYMARVQLKHHNGRMHRRDL 217

Query: 8756 RTGQWDRIVLKQLVEKSSGRLKHRADEFTPGSSGIALLSDKIDGQVSTSRGGVFIIRGRD 8577
                    +++    K++ R     D  T GSSG+   +  + GQ   +R    I+RGR 
Sbjct: 218  VVDTSTTTIMQTFFLKTA-RTNANLDVLTHGSSGLVFWNYLVTGQRMRTRDNFIIVRGRC 276

Query: 8576 GSKLYDSQCVVTTHVAARMHHYSVSERFWKGYDRGFQMARGPT--DHTCDSNLDVEECGL 8403
               L D++  ++       HHYS  + FW+G++R F +   P   DH C S+  VEECG 
Sbjct: 277  NGILVDARSKLSESTMLSTHHYSTGDVFWRGFNRTF-LENKPINLDHVCSSDFSVEECGS 335

Query: 8402 VAAIATQALFPCGKITCQQCVDKFTSSGKSELREEHSARLEELIGRIQKNHPKFKHVIQX 8223
            +AA+  Q+L PCGKITC+ C  K  +  +   +E  + R  E+   I   +P F  V Q 
Sbjct: 336  IAALICQSLLPCGKITCRACAAKNLNMDEDTFKESQTQRAREISAVIISKYPNFACVSQF 395

Query: 8222 XXXXXXXXXXXXXNVDQFSEVNRMIGERQETPFKQLADLNNLMIKIGSCTSEEVALGTAK 8043
                         NV+ + E+ +++G   ++P+  + +LN +++  G  T E+++  +A 
Sbjct: 396  IDRYFSHQRVLNPNVNAYREILKIVGGFTQSPYTHIQELNEILVLGGRATPEQLSSASAH 455

Query: 8042 ILEIVRFQRNRTDNIAKGSLAHFRNKVSSKVHVNLDLMCDNQLDDDGNFRWRQRAYHAKR 7863
            +LEI RF RNRTDNI KGSLA FRNK+S+K HVN  LMCDNQLD +GN  W +R YHAKR
Sbjct: 456  LLEITRFVRNRTDNIKKGSLALFRNKISAKAHVNTALMCDNQLDRNGNLVWGERGYHAKR 515

Query: 7862 LFSNFFDVIDPANGYDQFIKRKNPNGMRKTAIGNLIVSTNMQTFRQQMRGEPMESVPLSN 7683
             FSN+FD+I P  GY Q+I+R+ PNG+RK AIGNLIV+TN++  R+Q+ GE +E   ++ 
Sbjct: 516  FFSNYFDIITPGGGYRQYIERRVPNGIRKLAIGNLIVTTNLEALREQLEGESIEKKAVTK 575

Query: 7682 ACTSRLKGGFVYPCCCVTTDEGTPIESDMMIPTKDHLVIGNTGDSKFVNMPRMVEG-MYI 7506
            AC S     + YPCCCVT D+GTP+ S  ++PTK+HLVIGN+GD KF+++P  +   MYI
Sbjct: 576  ACVSMSDNNYKYPCCCVTLDDGTPLYSTFIMPTKNHLVIGNSGDPKFLDLPTDISTQMYI 635

Query: 7505 AKQGYCYVNIFLAMLINVSDAQSKDYTKKVRDIVIPKLGEWPTLLDVATMCHFLTVFYPD 7326
            AK GYCY+NIFLAML+NV ++ +KD+TKKVRDI++P LGEWPTL+DVAT C  L+ FYP 
Sbjct: 636  AKSGYCYINIFLAMLVNVDESDAKDFTKKVRDIIVPDLGEWPTLIDVATSCSLLSAFYPA 695

Query: 7325 VKSAELPRILVDHRNQIMHVIDSFGSLTTGYHILKANTVGQLVKFSNDELQSEMMHYRVG 7146
              +AELPRILVDH  + MHVIDS+GSL TGYH+LKANTV QL++F+++ L SEM HYRVG
Sbjct: 696  TSAAELPRILVDHDLKTMHVIDSYGSLNTGYHVLKANTVRQLIQFASNSLDSEMKHYRVG 755

Query: 7145 GTMMSEESSEDAAVTLLARGVYRPTELKRVLEKDPLLLVYGLLSPRVLIAMHKSKTLEMA 6966
            GT  S+ S   A + +LA+ VYRP  +K ++ + P +LV  L+SP +LIA+  S  LEM 
Sbjct: 756  GTPNSQISGY-ATIKMLAKAVYRPKLMKEIIHEQPYMLVMSLMSPGILIALANSGALEMG 814

Query: 6965 LDQWLHKDTSVANLCQMIDVLAKKVSVSKLFRTQQQIISENAMEIARCVDRCRTTSPSRT 6786
            +  W+ +  S+  +  M+  +A+ VSV++    QQ+IIS++A ++   +     T P+ +
Sbjct: 815  IHHWIREGDSLVKMAHMLRTVAQNVSVARATWVQQEIISDSAQQMLETI--LHGTIPNVS 872

Query: 6785 FVQLV--LTRLVESRNTSKELLSAGFQTLMYEGEEMREKKFSEVLAHSWRDLNWSQRCSA 6612
            + Q +  LT L  S+    E+   G+ T   +  E+ EK +  +L  SW++L++  R  A
Sbjct: 873  YFQAIQYLTMLAASKEMDAEVRVTGYYTFKLQTSELLEKTYLSLLEDSWQELSYFGRFQA 932

Query: 6611 IWHSRKASQHATNSSIEPEQ-TDSGETWTERFICLRGKLTSHVKVWTTSALSNGKRKAYE 6435
            I HSR+     T   ++PE+  D G  +   +     K   + K     A++  + +   
Sbjct: 933  IRHSRRYCTAGT-IVVKPERHVDLGGIYATSYQFALAKQMEYSKKAVCQAVNGLQARFNN 991

Query: 6434 TCGKVVCKLITSTKFFCPDIIKMVNVLSVFCLLLQISTVVNRHLLQYRILKEEQQNMRDD 6255
               ++ CK++   K   PD++K +N +    + LQ+       L  ++  K++   +   
Sbjct: 992  ITSQIYCKILNWPKRLFPDLVKFINTMLAITVALQLYIAFATILRHHQQCKQDSLELEYR 1051

Query: 6254 KDFETMMGIYNLYVKTYEGEYPTLKQFSTYLQKVNPQIYAYYERTMGEPDDTDECVELQA 6075
            K  + ++ +Y+ ++   +  Y T ++F  ++ + NP +  + +    E       V  QA
Sbjct: 1052 KKEKQLITLYDFFIA--KQPYATEEEFMAHVDEQNPDLSNFAKEYCAE------VVLFQA 1103

Query: 6074 KGKGEIELERTIAFVALIMMMFDAERSDCVYKVLNKLRGIMNPISAETVAFQGLDDMKEL 5895
            K   ++  ER IAF++L++MMFD ERSDCVY+ L KL+ +M+ +   TV FQ LDD+   
Sbjct: 1104 KASEQVNFERIIAFISLVLMMFDCERSDCVYRSLTKLKSLMSTVE-NTVHFQSLDDIGPT 1162

Query: 5894 LGETKMAIDIELDTENHQLNRLGGVTFGDWWTHQLNQNRTVPHYRTEGKFVEFTRANAMI 5715
            L E  M ID +LDT+      + G TF +WW  QLN NR VPHYRTEG F+EFTRANA  
Sbjct: 1163 LEEKNMTIDFDLDTDTIVGKSIVGHTFKEWWDVQLNTNRIVPHYRTEGHFMEFTRANAPT 1222

Query: 5714 VANEIAHSDQTDFLVMGAVGSGKSTGLPFHLSRKGKVLMIEPTKPLAENVHKQLKGNPFM 5535
            +A++I+H   TD ++ GAVGSGKSTGLP+HLS+KG VL++EPT+PLAENV KQLK +PF 
Sbjct: 1223 IAHQISHDLHTDIMLRGAVGSGKSTGLPYHLSKKGTVLLLEPTRPLAENVTKQLKSDPFH 1282

Query: 5534 SNATLRMRGCSVFGSSPITVMTSGYALHYFAHNIAQLAEYQFVIIDECHVHDASAMAFRC 5355
             + TLRMRG +VFGS+PI VMT+G+ALHY A+N+  L+ Y F+IIDE HVHD++A+A R 
Sbjct: 1283 VSPTLRMRGMAVFGSTPIHVMTTGFALHYLANNLKMLSTYDFIIIDEFHVHDSNAIALRN 1342

Query: 5354 LLLEYDYQGKVLKVSATPPGREATFNTQHPVLVKMEESLSFQQFVALQGSGANGDITQNG 5175
            LL E++YQGK++KVSATPPGRE  F+TQ+PV +++E+ +SFQ FV  QG+G+N D+T   
Sbjct: 1343 LLHEHNYQGKLIKVSATPPGREVEFSTQYPVEIRVEDQVSFQDFVKAQGNGSNLDLTSKC 1402

Query: 5174 DNILIYVASYNEVDTLSKMLLDKNHKVTKVDGRTMKMGQVEIPTAGTKEKKHFIVATNII 4995
            DN+L+YVASYNEVD LSK+LL+++  VTKVDGR+MK+GQVEI T G+  KKHFIVATNII
Sbjct: 1403 DNLLVYVASYNEVDQLSKLLLERHFLVTKVDGRSMKLGQVEIITKGSANKKHFIVATNII 1462

Query: 4994 ENGVTLDIDVVVDFGMKVVPELDIDNRLIRYSKVAISYGERIQRLGRVGRNKEGVALRIG 4815
            ENGVTLDID V+DFGMKVVP LD DNR+I Y+KV+ISYGERIQRLGRVGRNK G+ALRIG
Sbjct: 1463 ENGVTLDIDAVIDFGMKVVPFLDSDNRMISYNKVSISYGERIQRLGRVGRNKAGIALRIG 1522

Query: 4814 VTEKGLSAVPNVTATEAAFYCFAYGLPVMTSGVAVSMLSNCTVNQARTMMHFELPLFYMV 4635
             TEKG+S VP V AT+AAF CF YGLP+ T  V   +LSN T+ QARTM+ FELP+FYM 
Sbjct: 1523 HTEKGISDVPVVIATQAAFLCFVYGLPISTQSVTTQILSNVTLKQARTMVQFELPIFYMA 1582

Query: 4634 HMVRFDGSMHPELHKCLKDYKLRDSEIILNKMAIPSSGVKSWMTAGEYSRLGARNSIEEF 4455
            H+VR+DG+MHP +H  LK YKLRDSEI L+K+AIPS  V  WMT   Y  L   + I + 
Sbjct: 1583 HLVRYDGTMHPAIHNELKKYKLRDSEIQLSKLAIPSKCVPIWMTGKAYRLLTHNSQIPDN 1642

Query: 4454 VRIPFYARDIPDKVHERVWEVVVTFKRDAGFGKIQSASACKVAYTLQTDAASIPRTICII 4275
            VR+PF  ++IPDK+HE VW +V  FK DAG G++ SA A KVAYTL+TD  SI RTI II
Sbjct: 1643 VRVPFLTKEIPDKLHENVWAIVEKFKCDAGIGRMTSAQASKVAYTLETDIHSIQRTILII 1702

Query: 4274 EELIKNEVKKQEYFQVASGVDCGSG-FSLINITNALRSRHMSNHTAENIAILEAAKNQIY 4098
            ++L++ E++KQ +F++ +   C SG  SL  + NA++SR+  NHTA NI IL+ AK Q+ 
Sbjct: 1703 DQLLEREMQKQSHFEMVTNQSCSSGMLSLQTMMNAIQSRYARNHTAGNIEILQRAKAQLL 1762

Query: 4097 EFRNLGIDPSSKTVC-DFGALECVQFQSAEGVSKQLKLKGHWNKSLITKDLLVAGFTLFG 3921
            EF NL  D S+++   +FG LE VQFQS   VS  L L+GHW KSLITKDLL+ G    G
Sbjct: 1763 EFSNLSGDISTESALREFGYLEAVQFQSGTQVSNFLGLEGHWKKSLITKDLLIVGGVCVG 1822

Query: 3920 GLWMLYNHFKRAATTLVEFQASGKRQSQKRRFQIARNHKHAYEVNPDQTDVEHYFGEAYA 3741
              WM+  +F + +  +V FQ   KRQ QK +F  AR+ K  + V    + +EHYFG AY 
Sbjct: 1823 AAWMIGEYFFKKSKEVVAFQGYNKRQRQKLKFARARDEKMGHYVEAPDSTLEHYFGSAYT 1882

Query: 3740 KKPQQKGRTKGMGAKSRRFYNIYGFDPAEYTFARYVDPLTGYTLDENALTDARLVQEHFG 3561
            KK + KG+T GMG K+ RF N+YGFDP++YTF RYVDPLTGYTLDE+  TD RL+Q  F 
Sbjct: 1883 KKGKTKGKTHGMGKKNHRFVNMYGFDPSDYTFIRYVDPLTGYTLDESPYTDIRLIQSQFS 1942

Query: 3560 KIRLELREQDKLDAQALMANQKIEAYFVKDLAKQILKIDMTPHRPLELGCKTSTIAGYPE 3381
             IR +    D+L+   +     ++ Y VKD   QILKID+TPH PL++   T+ IAG+P+
Sbjct: 1943 DIREQQLLNDELEKNMVYYKPGVQGYLVKDKTSQILKIDLTPHIPLKVCDATNNIAGHPD 2002

Query: 3380 REGELRQAAPHVIVDASVLPKQNEYTSEGAEFESKATYQGLRDYNSISSSICLLENDSDG 3201
            REGELRQ     ++D + LP++ E      EFES + ++G+RDYN ISS IC LEN+S+G
Sbjct: 2003 REGELRQTGKGQLLDYAELPQKKEL----VEFESTSMFRGVRDYNPISSVICQLENESEG 2058

Query: 3200 YTMKIHGIGFGSMIITNQHLFKRNNGSLKIQSHRGEFLVPNTTQLKMYPFEGRDLLLIQM 3021
             T ++ G+GFG  IITNQHLF RNNGSL ++S  G F V +T  L+M P EGRD+L+I+M
Sbjct: 2059 RTTQLFGLGFGPFIITNQHLFVRNNGSLTVRSQMGVFKVNSTVTLQMRPVEGRDVLIIKM 2118

Query: 3020 PKDFPPFPQKLKFRLPVSGERVCLIGSNFQEKYISSTVSESSVIAQKDNTSFFRHWITTQ 2841
            PKDFPPFPQ+LKFR P   E+VCLI +NFQ+K  SS VSE+S I  K+NT F++HWI+T+
Sbjct: 2119 PKDFPPFPQRLKFRQPTHSEKVCLILTNFQQKSSSSMVSETSHIIPKENTYFWKHWISTK 2178

Query: 2840 KGHCGLPLVSVKDGHILGIHSMTSLEDSSSFFISLPPDIGPKYLQNEENIEWTKKWRLNL 2661
            +GHCG P+VS  DG ILGIHS++++ ++S++F   P      YL  E   EW K W+ N 
Sbjct: 2179 EGHCGSPIVSTTDGAILGIHSLSNMTNTSNYFACFPKGFTETYLATESIHEWVKGWKFNA 2238

Query: 2660 ELINWGAFKLSNEKPDNLFKLSKDIFELLDEPVDFQAKEGGWLYDRLGGNITAMARTSNQ 2481
              + WG+F L + KP   FK  K + +LL E V  Q  +  WL++    NI A+A+  + 
Sbjct: 2239 SNVCWGSFHLQDSKPAKEFKTVKLVTDLLGEAVYTQGYDSKWLFNAAHTNIQAVAQLESN 2298

Query: 2480 LVTKHVVKGQCLLFQTYLETHPEASNFFKPLMGFYQKSRLNKEAYIKDLFKYNAPTTVGV 2301
            LVTKH VKG+C LF+TYL     A +FF   MGFY+ S+LN+EAY +DL KY+    VG 
Sbjct: 2299 LVTKHTVKGKCKLFETYLNVDKAAHDFFSKYMGFYKPSKLNREAYTQDLMKYSKVIQVGE 2358

Query: 2300 LNPHVFELAEESVYNMFVGIGFQKCVYVTDQEAIFSALNMKAATGALYQGKKKEYFENFT 2121
            ++  VFE A   + +     GF    Y TD+++I++ALNMK+A GALY+GKK++YF+  +
Sbjct: 2359 VDCGVFESALTGLLHNLGRWGFTTACYTTDEDSIYAALNMKSAVGALYRGKKRDYFDAMS 2418

Query: 2120 EADKAQILKDSCFRLYTGKLGVWNGSLKAELRPLEKVQANKTRSFTAAPIDTLLGGKVCV 1941
             +++  +L  SC RLY G+LGVWNGSLKAELRP EKV  NKTR+FTAAPI+TLLGGKVCV
Sbjct: 2419 SSEREHLLFLSCKRLYFGQLGVWNGSLKAELRPKEKVDLNKTRTFTAAPIETLLGGKVCV 2478

Query: 1940 DDFNNQFYSLNLKAPWSVGMTKFYGGWNTLIRSLPEGWIYCDADGSQFDSSLTPYLINAV 1761
            DDFNN FYSL+LKAPWSVGMTKFYG WN L+  LP+ W+YCDADGSQFDSS++PY+INAV
Sbjct: 2479 DDFNNMFYSLHLKAPWSVGMTKFYGTWNQLMCKLPDDWVYCDADGSQFDSSISPYMINAV 2538

Query: 1760 LNLRLRFMEDWDVGTQMLENLYTEIVYTPIATPDGTIVKKYKGNNSGQPSTVVDNTIMVI 1581
            L +RL FMEDWD+G++ML+NLYTEIVYTPI+TPDGT+VKK+KGNNSGQPSTVVDNT++V+
Sbjct: 2539 LRIRLHFMEDWDIGSRMLQNLYTEIVYTPISTPDGTVVKKFKGNNSGQPSTVVDNTLLVV 2598

Query: 1580 LAMHYASGLYNSDVAITE---YCVFFVNGDDLIIAVHPDHQAFLDGLKESFTHLGLKYDF 1410
            LAMHYA  L  S V + E    CV+ VNGDDL+IA+ PD +  LDG +  F+ LGL Y+F
Sbjct: 2599 LAMHYA--LLKSGVPLEEQDSVCVYCVNGDDLLIAIRPDMEHKLDGFQALFSELGLNYEF 2656

Query: 1409 SNRCQSREDLWFMSHKAILSGDIYIPKLEEERIVSILEWDRAILPEHRLEAICASMIEAW 1230
            ++R + ++DLWFMSHKAI  G+I IPKLEEERI+SILEWDR+  P HRLEAICASM+E+W
Sbjct: 2657 NSRSKDKKDLWFMSHKAIQCGEILIPKLEEERIISILEWDRSHEPIHRLEAICASMVESW 2716

Query: 1229 GYPDLLYQIRRFYYWVLEQAPYNHLSQTGKAPYISEAALKNLYTN-QSSPSELQRYVDSL 1053
            GYP+L ++IRRFY WVLEQ+PYN L+ TG APYI+E+ALK LYTN   + +EL++Y  S+
Sbjct: 2717 GYPELTHEIRRFYAWVLEQSPYNALATTGLAPYIAESALKALYTNVHPTSTELEKY--SI 2774

Query: 1052 EWNNLTGEE--AVEFQGTEDESLNAGDQTKKTSEAK---GKDNKEKALETRPKDKDVDVG 888
            +++    EE   V FQ     +L+AG+   K SE +   G+ N  KA+    KDKDVD+G
Sbjct: 2775 QFDEQINEEDDMVYFQ---SGTLDAGETLAKKSEGRKKEGEGNSGKAVAV--KDKDVDLG 2829

Query: 887  TSGIYQVPKLKAIGTKFCLPKVKGRTIVNLDHLISYEPEQINLSNARATQSQFAQWYNGV 708
            T+G + VP+LK++ +K  LP +KG+++VNLDHL+SY+P+Q++LSNARAT  QF  WY+GV
Sbjct: 2830 TAGTHSVPRLKSMTSKLTLPMLKGKSVVNLDHLLSYKPKQVDLSNARATHEQFQNWYDGV 2889

Query: 707  KDAYELDDNSMGIVMSGLMVWCIENGTSPNINGQWTMMDGDEQVEYPLKPVVENAQPSLR 528
              +YEL+++SM I+++G MVWCIENGTSP+ING WTMMD +EQV YPLKP++++A+PSLR
Sbjct: 2890 MASYELEESSMEIILNGFMVWCIENGTSPDINGVWTMMDNEEQVSYPLKPMLDHAKPSLR 2949

Query: 527  QIMAHFSALAEAYIEKRNATKPYMPRYGLLRNLRDSSLARYAFDFYEVTSRTPPRAREAH 348
            QIM HFSALAEAYIE R+  KPYMPRYGL RNLRD SLARYAFDFYE+T+ TP RA+EAH
Sbjct: 2950 QIMRHFSALAEAYIEMRSREKPYMPRYGLQRNLRDQSLARYAFDFYEITATTPVRAKEAH 3009

Query: 347  LQMKAAAIRNSSTKMFGLDGNAGDKEEDTERHTANDVSKNMHSLMGVR 204
            LQMKAAA++NS+T MFGLDGN    EEDTERHTA DV++NMH L+GV+
Sbjct: 3010 LQMKAAALKNSNTNMFGLDGNVTTSEEDTERHTATDVNRNMHHLLGVK 3057


>gb|AJS10746.1| polyprotein [Sweet potato latent virus]
          Length = 3247

 Score = 2981 bits (7727), Expect = 0.0
 Identities = 1523/2985 (51%), Positives = 2030/2985 (68%), Gaps = 43/2985 (1%)
 Frame = -1

Query: 9029 DYGHFAPRPLNIDDKPNLGDAKKSKTLSARVHYDWLNLVRAVANIQKRTGVVIELISNRR 8850
            D G    +PLN    P++   K  K ++ +   D   L++ V  I  R  +  E+I  + 
Sbjct: 273  DNGMSIKKPLN--KTPSMKKRKICKRVTLK-EQDLEELIKTVGKIVSRGNLKFEVIVGK- 328

Query: 8849 KVTANRLLK-DNKRYVRVVTKHELGYRHKCDVRTGQWDRIVLKQLVEKSSGRLKHRADEF 8673
            KVT  R  K D   ++ +   H  G R + D++    +  ++K +    +        +F
Sbjct: 329  KVTTGRFKKFDGNNHMFLDLMHMQGMRRRIDIKVPNANCYIIKVMAHAVNFERTFNTRKF 388

Query: 8672 TPGSSGIALLSDKIDGQVSTSRGGVFIIRGRDGSKLYDSQCVVTTHVAARMHHYS-VSER 8496
            + G+SG+     K  G++  +R G+FI+RGR   KLYD++  VT  V   M HY+ V+++
Sbjct: 389  SHGTSGLVFNPCKATGRMGRARDGIFIVRGRHEGKLYDARQKVTESVMLHMQHYTDVAQK 448

Query: 8495 FWKGYDRGFQMARGPT-DHTCDSNLDVEECGLVAAIATQALFPCGKITCQQCVDKFTSSG 8319
            FWKG+D+ F   R     H C ++LDV  CG +AA+  Q L PC KITC QC        
Sbjct: 449  FWKGFDKMFLPNRPEERPHVCVADLDVSRCGEMAALTCQVLQPCVKITCTQCFTHLNELS 508

Query: 8318 KSELREEHSARLEELIGRIQKNHPKFKHVIQXXXXXXXXXXXXXXNVDQFSEVNRMIGER 8139
                +E   +R+ +++ +I+ ++P+F  +                N + FSE  R+IG+R
Sbjct: 509  DRAYKELLKSRVLKIVPQIRAHYPEFSFMADFLERFGRVASLANENYEAFSENRRLIGDR 568

Query: 8138 QETPFKQLADLNNLMIKIGSCTSEEVALGTAKILEIVRFQRNRTDNIAKGSLAHFRNKVS 7959
             E PF  L  LNN ++K GS T EE +  +  + E+VR+  NRT+NI KGSL  FRNK+S
Sbjct: 569  NEQPFSSLNKLNNYLVKGGSLTGEEFSEASDCLRELVRYHNNRTENIKKGSLEQFRNKIS 628

Query: 7958 SKVHVNLDLMCDNQLDDDGNFRWRQRAYHAKRLFSNFFDVIDPANGYDQFIKRKNPNGMR 7779
             + H N  LMCDNQLD +GNF W +R YHAKR F+N+FD+++P +GY ++I+RKNPNG R
Sbjct: 629  QRSHFNASLMCDNQLDKNGNFIWGERGYHAKRFFANYFDIVEPKDGYAKYIQRKNPNGSR 688

Query: 7778 KTAIGNLIVSTNMQTFRQQMRGEPMESVPLSNACTSRLKGGFVYPCCCVTTDEGTPIESD 7599
            + AI NLIVSTN +  R+ M G P++  PLS  C S   G FVY C CVT ++G P ESD
Sbjct: 689  ELAINNLIVSTNFERMRELMEGIPVKKHPLSKQCVSMRNGNFVYVCSCVTLNDGQPQESD 748

Query: 7598 MMIPTKDHLVIGNTGDSKFVNMPRMV-EGMYIAKQGYCYVNIFLAMLINVSDAQSKDYTK 7422
            + +PT++HLVIGN GD K+V++P  V E +YIAK+G+CY+NIFLAML+NV ++++KD+TK
Sbjct: 749  LKLPTRNHLVIGNAGDPKYVDLPTEVSEKLYIAKEGFCYINIFLAMLVNVRESEAKDFTK 808

Query: 7421 KVRDIVIPKLGEWPTLLDVATMCHFLTVFYPDVKSAELPRILVDHRNQIMHVIDSFGSLT 7242
            +VRDIV+ KLG+WPT++DVAT C  L VF+P+V+ AELPRILVDH  + MHVIDS+GS  
Sbjct: 809  RVRDIVVQKLGKWPTMIDVATACCLLAVFHPEVQDAELPRILVDHTTKTMHVIDSYGSKN 868

Query: 7241 TGYHILKANTVGQLVKFSNDELQSEMMHYRVGGTMMSEESSEDAAVTLLARGVYRPTELK 7062
            TGYHILKANTV QL++F++D L+SEM +Y VGG   +  S E +++ ++ +GVY+P  ++
Sbjct: 869  TGYHILKANTVNQLMQFASDSLESEMKYYVVGGHAHTS-SFERSSIKMIIKGVYKPAIMR 927

Query: 7061 RVLEKDPLLLVYGLLSPRVLIAMHKSKTLEMALDQWLHKDTSVANLCQMIDVLAKKVSVS 6882
             +LE DP +L+  +LSP VL A+H S +LE AL+ W++ D  V  +  ++  LA++VSV+
Sbjct: 928  EILETDPYMLLMAILSPTVLKALHTSGSLERALEYWINSDQDVVTIIMIVKTLAQRVSVA 987

Query: 6881 KLFRTQQQIISENAMEIARCVDRCRTTSPSRTFVQLVLTRLVESRNTSKELLSAGFQTLM 6702
            +   TQ Q++   A E+   + + R  S +       L  L   +N    L+  GFQ ++
Sbjct: 988  RTLTTQMQVVQSYATELTGYIHQTRRASIAAVVAFRTLQHLKNKQNADGVLVQQGFQNMV 1047

Query: 6701 Y-EGEEMREKKFSEVLAHSWRDLNWSQRCSAIWHSRKASQHATNSSIEPEQTDSGETWTE 6525
              E  E  EKK+++ L   W  L+  Q+C  +    K  +HA  S      T+    +  
Sbjct: 1048 ERETLETLEKKYAQDLKQQWCALSLLQKCYYMLQYMKQCRHAHESGTSMRTTERVGVYIA 1107

Query: 6524 RFICLRGKLTSHVKVWTTSALSNGKRKAYETCGKVVCKLITSTKFFCPDIIKMVNVLSVF 6345
                  G   + +++     LS       +    +  K +   ++  PD+I+M N++ + 
Sbjct: 1108 YPSQFLGSALAIMRLARNQVLSILVESRLKAKLFIFDKALAMMRYGVPDVIRMANIIIII 1167

Query: 6344 CLLLQISTVVNRHLLQYRILKEEQQNMRDDKDFETMMGIYNLYVKTYEGEYPTLKQFSTY 6165
             +L +++  + R L  +   +       DD+DF  +  +Y   +K+ +G  PT+ +F   
Sbjct: 1168 TILYEVAARLRRLLQDHLKYRAAYMQDADDEDFTKLKDLYVESIKS-DGTLPTVGEFLEI 1226

Query: 6164 LQKVNPQIYAYYERTMGEPDDTDECVELQAKGKGEIELERTIAFVALIMMMFDAERSDCV 5985
            + +  P++      ++       E V  QAK   E + ER IA +AL MM FDAERSDCV
Sbjct: 1227 VNERAPELNKCAAESIAF---ARENVVHQAKSSAEAKYERIIAMIALFMMAFDAERSDCV 1283

Query: 5984 YKVLNKLRGIMNPISAETVAFQGLDDMKELLGETKMAIDIELDTENHQLNRLGGVTFGDW 5805
            YK+LNKLR + N I+ + V  Q LDD+K+   E +M ID ELD++   ++ L   TF  W
Sbjct: 1284 YKILNKLRTLTN-IAQQDVHHQSLDDIKDEFNEKRMTIDFELDSDTQSMSSLTDTTFAKW 1342

Query: 5804 WTHQLNQNRTVPHYRTEGKFVEFTRANAMIVANEIAHSDQTDFLVMGAVGSGKSTGLPFH 5625
            W++QL  N  +PHYRTEG F+EFTRANA  VA+EIA S   D L+ GAVGSGKSTGLPF+
Sbjct: 1343 WSNQLAMNNVIPHYRTEGYFMEFTRANASAVAHEIATSHHKDILIRGAVGSGKSTGLPFN 1402

Query: 5624 LSRKGKVLMIEPTKPLAENVHKQLKGNPFMSNATLRMRGCSVFGSSPITVMTSGYALHYF 5445
            L RKG VL++EPT+PLAENV KQL+G+PF  + TL+MRG SVFGSSPIT+MTSGYALHY 
Sbjct: 1403 LMRKGAVLLVEPTRPLAENVCKQLRGDPFNLSPTLKMRGLSVFGSSPITIMTSGYALHYL 1462

Query: 5444 AHNIAQLAEYQFVIIDECHVHDASAMAFRCLLLEYDYQGKVLKVSATPPGREATFNTQHP 5265
            A+N+  +A YQF+I DECHV+DASAMAFRCLL E+ + GK+LKVSATPPGRE  F TQHP
Sbjct: 1463 ANNVHCIANYQFIIFDECHVNDASAMAFRCLLHEHAFAGKILKVSATPPGREVEFTTQHP 1522

Query: 5264 VLVKMEESLSFQQFVALQGSGANGDITQNGDNILIYVASYNEVDTLSKMLLDKNHKVTKV 5085
            V V +EES+SF  FVA QG+G N D+   GDNIL+YVASYN+VD LSK+LL++ H+VTKV
Sbjct: 1523 VKVLVEESISFSDFVAAQGTGQNADVVARGDNILVYVASYNDVDNLSKLLLERGHRVTKV 1582

Query: 5084 DGRTMKMGQVEIPTAGTKEKKHFIVATNIIENGVTLDIDVVVDFGMKVVPELDIDNRLIR 4905
            DGRTMK+G VEI T GT ++KHFIVATNIIENGVTLDIDVVVDFG KV P LD D R I 
Sbjct: 1583 DGRTMKVGSVEIATYGTSKQKHFIVATNIIENGVTLDIDVVVDFGRKVSPSLDTDCRQIL 1642

Query: 4904 YSKVAISYGERIQRLGRVGRNKEGVALRIGVTEKGLSAVPNVTATEAAFYCFAYGLPVMT 4725
              +V I+YGERIQRLGRVGR K G ALRIG TEKGL  +P + ATEAA  CF YGLPVMT
Sbjct: 1643 AGQVPITYGERIQRLGRVGRVKPGCALRIGWTEKGLVDIPALVATEAALLCFTYGLPVMT 1702

Query: 4724 SGVAVSMLSNCTVNQARTMMHFELPLFYMVHMVRFDGSMHPELHKCLKDYKLRDSEIILN 4545
              V+ ++LS CTV QARTM HFEL  ++ V +VR DG+MHP +H  LK YKLRDSEI LN
Sbjct: 1703 HNVSTALLSGCTVRQARTMQHFELSPYFTVDLVRHDGTMHPMIHNLLKKYKLRDSEISLN 1762

Query: 4544 KMAIPSSGVKSWMTAGEYSRLGARNSIEEFVRIPFYARDIPDKVHERVWEVVVTFKRDAG 4365
            KMA+P      WMT  EY+R     S++E ++IPF    IPD ++  +W++V  ++ D G
Sbjct: 1763 KMALPVGQSTRWMTVREYNRCARAMSLDEDIKIPFLMNGIPDSLYSELWDIVQKYRGDVG 1822

Query: 4364 FGKIQSASACKVAYTLQTDAASIPRTICIIEELIKNEVKKQEYFQVASGVDCGSG-FSLI 4188
            FG+I S +A K+AYTL+TD  ++PRT+ IIEELI+ E+ KQEYF+  S   C S   SL 
Sbjct: 1823 FGRITSNNAGKIAYTLKTDFTALPRTVKIIEELIEGEMAKQEYFRSVSANACSSSNISLA 1882

Query: 4187 NITNALRSRHMSNHTAENIAILEAAKNQIYEFRNLGIDPSSKTVCD---------FGALE 4035
            +  NA+++R+  +HTAENIA+L+AAK QI E +NL +D S  ++ D         + A  
Sbjct: 1883 SALNAIKARYAKDHTAENIAVLQAAKAQIIELKNLDLDGSFMSMSDRAVESYVKEYSASS 1942

Query: 4034 CVQFQSAEGVSKQLKLKGHWNKSLITKDLLVAGFTLFGGLWMLYNHFKRAATTLVEFQAS 3855
            CVQ Q+ E + + L LKG WNKSLIT+DL+V G    GGL+++Y  FK    T V  Q  
Sbjct: 1943 CVQHQNKEAIVQHLNLKGIWNKSLITQDLVVMGGVFVGGLYLMYESFKDGVDTKVSHQGY 2002

Query: 3854 GKRQSQKRRFQIARNHKHAYEVNPDQTDVEHYFGEAYAKKPQQKGRTKGMGAKSRRFYNI 3675
             KRQ QK +F+  R+ K   EV  D   +EHYFG AY KK + KG  +GMGAK+RRF N+
Sbjct: 2003 NKRQRQKLKFRETRDQKLGREVYGDDGTIEHYFGTAYTKKGKTKGSKRGMGAKNRRFTNM 2062

Query: 3674 YGFDPAEYTFARYVDPLTGYTLDENALTDARLVQEHFGKIRLELREQDKLDAQALMANQK 3495
            YG+DP++Y+F R+VDPLTG+TLDEN   D  LVQEHFG+IR     +D L+ Q +M+   
Sbjct: 2063 YGYDPSDYSFVRFVDPLTGHTLDENIYADIELVQEHFGEIRRAYMAEDMLEPQKIMSMPG 2122

Query: 3494 IEAYFVKDLAKQILKIDMTPHRPLELGCKTS-TIAGYPEREGELRQAAPHVIVDASVLPK 3318
            I+AY++ + A + LK+DMTPH PL++ C+TS TIAG+PE+E  LRQ     I+ +  +PK
Sbjct: 2123 IQAYYMSNAADKALKVDMTPHNPLKI-CETSNTIAGFPEQESVLRQTGKPEIIKSVEVPK 2181

Query: 3317 QNEYTSEGAEFESKATYQGLRDYNSISSSICLLENDSDGYTMKIHGIGFGSMIITNQHLF 3138
             NEYT +    ESK+ ++GLRDYN I+S IC + N+SDG+    +G+G+G MII NQHLF
Sbjct: 2182 VNEYTPDTVIHESKSLFRGLRDYNPIASVICQITNESDGHISSTYGVGYGCMIIANQHLF 2241

Query: 3137 KRNNGSLKIQSHRGEFLVPNTTQLKMYPFEGRDLLLIQMPKDFPPFPQKLKFRLPVSGER 2958
            KRNNG+L I+S  GEF + N+T LKM P  GRD++L+QMPKDFPPFP++LKFR P  GER
Sbjct: 2242 KRNNGTLLIKSRAGEFRIQNSTTLKMKPCVGRDVILLQMPKDFPPFPRRLKFRQPEKGER 2301

Query: 2957 VCLIGSNFQEKYISSTVSESSVIAQKDNTSFFRHWITTQKGHCGLPLVSVKDGHILGIHS 2778
            +C++GSNFQEK ISS +SESSVI   D T F++HWI T+ G CGLP+VS KDG ILGIHS
Sbjct: 2302 ICMVGSNFQEKSISSVISESSVIHPVDGTHFWKHWIDTKDGQCGLPIVSTKDGSILGIHS 2361

Query: 2777 MTSLEDSSSFFISLPPDIGPKYLQNEENIEWTKKWRLNLELINWGAFKLSNEKPDNLFKL 2598
            +    ++++FF   P     ++L+N  N++WTK W+ N   + WG+ KL++ +P+ +FK 
Sbjct: 2362 LAGSSNTTNFFTDFPEGFVVEFLENAHNLDWTKAWKYNPVGVLWGSLKLTDSQPEPIFKA 2421

Query: 2597 SKDIFELLDEPVDFQAKEGGWLYDRLGGNITAMARTSNQLVTKHVVKGQCLLFQTYLETH 2418
             K I +L    V  Q+ +G WL+  L GN+ A+  + +QLVTKHVVKG+C +F+ YL+ +
Sbjct: 2422 QKLISDLNSMQVYAQSYDGKWLFSALNGNLKAVGESPSQLVTKHVVKGKCPMFELYLQNN 2481

Query: 2417 PEASNFFKPLMGFYQKSRLNKEAYIKDLFKYNAPTTVGVLNPHVFELAEESVYNMFVGIG 2238
             EA+ FFKPLMG YQKS LNKEAY KDLFKY   T VG+++  +FE A  SV  +     
Sbjct: 2482 EEAAKFFKPLMGAYQKSMLNKEAYKKDLFKYAEVTDVGLVDCDIFEKALNSVIQLLERHQ 2541

Query: 2237 FQKCVYVTDQEAIFSALNMKAATGALYQGKKKEYFENFTEADKAQILKDSCFRLYTGKLG 2058
            F  CVY+TD++ I  +LNMKAA GALY GKKKEYF+   + ++  IL+ SC RLY GKLG
Sbjct: 2542 FGTCVYITDEDEIIDSLNMKAAVGALYSGKKKEYFQELGQKEREDILRASCLRLYLGKLG 2601

Query: 2057 VWNGSLKAELRPLEKVQANKTRSFTAAPIDTLLGGKVCVDDFNNQFYSLNLKAPWSVGMT 1878
            VWNGSLKAELRPLEKVQANKTR+FTAAP+DTLL GKVCVD FNN+FY L+++ PWSVGMT
Sbjct: 2602 VWNGSLKAELRPLEKVQANKTRTFTAAPLDTLLAGKVCVDAFNNRFYDLHIQCPWSVGMT 2661

Query: 1877 KFYGGWNTLIRSLPEGWIYCDADGSQFDSSLTPYLINAVLNLRLRFMEDWDVGTQMLENL 1698
            KFYGGW+ L+ +LP+GW YCDADGSQFDSSL+PYLINAVL LRL FME+WD+G QML NL
Sbjct: 2662 KFYGGWDELLTALPDGWKYCDADGSQFDSSLSPYLINAVLQLRLHFMEEWDIGEQMLRNL 2721

Query: 1697 YTEIVYTPIATPDGTIVKKYKGNNSGQPSTVVDNTIMVILAMHYASGLYNSDVAITE--- 1527
            YTEIVYTPI TPDGTI+KK+KGNNSGQPSTVVDNT+MVILAM+Y+  L+    ++ E   
Sbjct: 2722 YTEIVYTPILTPDGTIIKKHKGNNSGQPSTVVDNTLMVILAMYYS--LHAEGYSMNEAES 2779

Query: 1526 YCVFFVNGDDLIIAVHPDHQAFLDGLKESFTHLGLKYDFSNRCQSREDLWFMSHKAILSG 1347
             C FFVNGDDL+IAVHP+H+A LD L+  F  LGLKY F +R   +  LWFMSH+ I   
Sbjct: 2780 VCKFFVNGDDLLIAVHPEHEAILDKLQSHFKQLGLKYTFDDRHDDKSSLWFMSHQGIKRD 2839

Query: 1346 DIYIPKLEEERIVSILEWDRAILPEHRLEAICASMIEAWGYPDLLYQIRRFYYWVLEQAP 1167
            ++YIPKLE+ERIVSILEWDRA  P HR+EAICA+M+EAWGY DL+++IR+FY W+L+QAP
Sbjct: 2840 NMYIPKLEKERIVSILEWDRAREPVHRMEAICAAMVEAWGYDDLVHEIRKFYKWLLDQAP 2899

Query: 1166 YNHLSQTGKAPYISEAALKNLYTNQS-SPSELQRYVDSLEWNNLTGEEAVEFQGTEDES- 993
            Y+ L++ G APYI+E AL+ LYT+ +   SEL+RY+ ++       EE  +     DE+ 
Sbjct: 2900 YSDLAKNGGAPYIAEVALRKLYTSVAPDQSELERYLAAIMEEPEFDEEDADVHHQADETI 2959

Query: 992  LNAGD-QTKK------------TSEAKGKDNKEKAL---------ETRPKDKDVDVGTSG 879
            LNAG  +TKK            T    G  +K K +          T   D+D++ GT G
Sbjct: 2960 LNAGKVETKKKQNTEGTPPQTNTPTQPGPSDKGKEVISAKGGEITRTSEHDRDINTGTLG 3019

Query: 878  IYQVPKLKAIGTKFCLPKVKGRTIVNLDHLISYEPEQINLSNARATQSQFAQWYNGVKDA 699
             +QVP+L+AI TK  LP VK    +NLDHL+ Y+P Q++++NA+AT+SQF QWY GVK+A
Sbjct: 3020 TFQVPRLRAIPTKIRLPLVKSGAALNLDHLLVYKPSQLDITNAKATRSQFNQWYEGVKNA 3079

Query: 698  YELDDNSMGIVMSGLMVWCIENGTSPNINGQWTMMDGDEQVEYPLKPVVENAQPSLRQIM 519
            YE+DD  M I+M+GL+VWCIENGTSPNING W MMDGD QV YP+KP+++ A P+ RQIM
Sbjct: 3080 YEVDDQQMSILMNGLVVWCIENGTSPNINGDWVMMDGDTQVSYPIKPLIDFAAPTFRQIM 3139

Query: 518  AHFSALAEAYIEKRNATKPYMPRYGLLRNLRDSSLARYAFDFYEVTSRTPPRAREAHLQM 339
             HFS +AEAYI+ RNA +PYMPRYGL RNL D SLARYAFDFYEVTSRTP RA+EA+ QM
Sbjct: 3140 KHFSDVAEAYIQMRNAEQPYMPRYGLQRNLTDMSLARYAFDFYEVTSRTPIRAKEAYFQM 3199

Query: 338  KAAAIRNSSTKMFGLDGNAGDKEEDTERHTANDVSKNMHSLMGVR 204
            KAAA+ N+  ++FGLDGN    EE+TERHTA DV +N+H+L+G+R
Sbjct: 3200 KAAALTNTHHRLFGLDGNVSTTEENTERHTATDVDRNIHTLLGMR 3244


>gb|AAN34778.1| polyprotein [Potato virus A]
          Length = 3059

 Score = 2981 bits (7727), Expect = 0.0
 Identities = 1510/2925 (51%), Positives = 2025/2925 (69%), Gaps = 15/2925 (0%)
 Frame = -1

Query: 8933 YDWLNLVRAVANIQKRTGVVIELISNRRKVTANRLLKDNKRYV-RVVTKHELGYRHKCDV 8757
            Y    L R + N+ KRTG+ +E++    K T  R  K +  Y+ RV  KH  G  H+ D+
Sbjct: 158  YSVQQLCRTLGNLSKRTGISLEVVGKTSKATKLRFTKTSFGYMARVQLKHHDGRMHRRDL 217

Query: 8756 RTGQWDRIVLKQLVEKSSGRLKHRADEFTPGSSGIALLSDKIDGQVSTSRGGVFIIRGRD 8577
                    +++ L  K++ R     D  T GSSG+   +  + GQ   +R    I+RGR 
Sbjct: 218  VVDTSTTTIMQTLFLKTA-RTNANLDVLTHGSSGLVFWNYLVTGQRMRTRDNFIIVRGRC 276

Query: 8576 GSKLYDSQCVVTTHVAARMHHYSVSERFWKGYDRGFQMARGPT--DHTCDSNLDVEECGL 8403
               L D++  ++       HHYS  + FW+G++R F +   P   DH C S+  VEECG 
Sbjct: 277  NGILVDARAKLSESTMLSTHHYSTGDVFWRGFNRTF-LENKPINLDHVCSSDFSVEECGS 335

Query: 8402 VAAIATQALFPCGKITCQQCVDKFTSSGKSELREEHSARLEELIGRIQKNHPKFKHVIQX 8223
            +AA+  Q+L PCGKITC+ C  K  +  +   +E  + R  E+   I   +P F  V Q 
Sbjct: 336  IAALICQSLLPCGKITCRACAAKNLNMDEDTFKEFQTQRAREISAVIISKYPNFACVSQF 395

Query: 8222 XXXXXXXXXXXXXNVDQFSEVNRMIGERQETPFKQLADLNNLMIKIGSCTSEEVALGTAK 8043
                         NV+ + E+ +++G   ++P+  + +LN +++  G  T E+++  +A 
Sbjct: 396  IDRYFSHQRVLNPNVNAYREILKIVGGFTQSPYTHIQELNEILVLGGRATPEQLSSASAH 455

Query: 8042 ILEIVRFQRNRTDNIAKGSLAHFRNKVSSKVHVNLDLMCDNQLDDDGNFRWRQRAYHAKR 7863
            +LEI RF RNRTDNI KGSLA FRNK+S+K HVN  LMCDNQLD +GN  W +R YHAKR
Sbjct: 456  LLEITRFVRNRTDNIKKGSLALFRNKISAKAHVNTALMCDNQLDRNGNLIWGERGYHAKR 515

Query: 7862 LFSNFFDVIDPANGYDQFIKRKNPNGMRKTAIGNLIVSTNMQTFRQQMRGEPMESVPLSN 7683
             FSN+FD+I P  GY Q+I+R+ PNG+RK AIGNLIV+TN++  R+Q+ GE +E   ++ 
Sbjct: 516  FFSNYFDIITPGGGYKQYIERRVPNGIRKLAIGNLIVTTNLEALREQLEGESIEKKAVTK 575

Query: 7682 ACTSRLKGGFVYPCCCVTTDEGTPIESDMMIPTKDHLVIGNTGDSKFVNMPRMVEG-MYI 7506
            AC S     + YPCCCVT D+GTP+ S  ++PTK+HLVIGN+GD KF+++P  +   MYI
Sbjct: 576  ACVSMSDNNYKYPCCCVTLDDGTPLYSTFIMPTKNHLVIGNSGDPKFLDLPTDISTQMYI 635

Query: 7505 AKQGYCYVNIFLAMLINVSDAQSKDYTKKVRDIVIPKLGEWPTLLDVATMCHFLTVFYPD 7326
            AK GYCY+NIFLAML+NV ++ +KD+TKKVRDI++P LGEWPTL+DVAT C  L+ FYP 
Sbjct: 636  AKSGYCYINIFLAMLVNVDESDAKDFTKKVRDIIVPDLGEWPTLIDVATSCSLLSAFYPA 695

Query: 7325 VKSAELPRILVDHRNQIMHVIDSFGSLTTGYHILKANTVGQLVKFSNDELQSEMMHYRVG 7146
              +AELPRILVDH  + MHVIDS+GSL TGYH+LKANTV QL++F+++ L SEM HYRVG
Sbjct: 696  TSAAELPRILVDHDLKTMHVIDSYGSLNTGYHVLKANTVRQLIQFASNSLDSEMKHYRVG 755

Query: 7145 GTMMSEESSEDAAVTLLARGVYRPTELKRVLEKDPLLLVYGLLSPRVLIAMHKSKTLEMA 6966
            GT  S+ +   A + +LA+ VYRP  +K ++ + P +LV  L+SP +LIA+  S  LEM 
Sbjct: 756  GTPNSQINGY-ATIKMLAKAVYRPKLMKEIIHEQPYMLVMSLMSPGILIALANSGALEMG 814

Query: 6965 LDQWLHKDTSVANLCQMIDVLAKKVSVSKLFRTQQQIISENAMEIARCVDRCRTTSPSRT 6786
            +  W+ +  S+  +  M+  +A+ VSV++    QQ+IIS++A ++   +     T P+ +
Sbjct: 815  IHHWIREGDSLVKMAHMLRTVAQNVSVARATWVQQEIISDSAQQMLETI--LNGTIPNVS 872

Query: 6785 FVQLV--LTRLVESRNTSKELLSAGFQTLMYEGEEMREKKFSEVLAHSWRDLNWSQRCSA 6612
            + Q +  LT L  S+    E+   G+ T   +  E+ EK +  +L  SW++L++  R  A
Sbjct: 873  YFQAIQYLTMLAASKEVDAEVRVTGYYTFKLQTSELLEKTYLSLLEDSWQELSYFGRFQA 932

Query: 6611 IWHSRKASQHATNSSIEPEQ-TDSGETWTERFICLRGKLTSHVKVWTTSALSNGKRKAYE 6435
            I HSR+     T   ++PE+  D G  +   +     K   + K     A++  + +   
Sbjct: 933  IRHSRRYCTAGT-IVVKPERHVDLGGIYATSYQFALAKQMEYSKKAVCQAVNGLQARFNN 991

Query: 6434 TCGKVVCKLITSTKFFCPDIIKMVNVLSVFCLLLQISTVVNRHLLQYRILKEEQQNMRDD 6255
               ++ CK++   K   PD++K +N +    + LQ+       L  ++  K++   +   
Sbjct: 992  ITSQIYCKILNWPKRLFPDLVKFINTMLAITVALQLYIAFATILRHHQQCKQDSLELEYC 1051

Query: 6254 KDFETMMGIYNLYVKTYEGEYPTLKQFSTYLQKVNPQIYAYYERTMGEPDDTDECVELQA 6075
            K    ++ +Y+ ++   +  Y T ++F  ++ + NP +  +      E       V  QA
Sbjct: 1052 KKERQLITLYDFFIA--KQPYATEEEFMAHVDEQNPDLSNFAREYCAE------VVLFQA 1103

Query: 6074 KGKGEIELERTIAFVALIMMMFDAERSDCVYKVLNKLRGIMNPISAETVAFQGLDDMKEL 5895
            K   ++  ER IAF++L++MMFD ERSDCVY+ L KL+ +M+ +   TV FQ LDD+   
Sbjct: 1104 KASEQVNFERIIAFISLVLMMFDCERSDCVYRSLTKLKSLMSTVE-NTVQFQSLDDIGPT 1162

Query: 5894 LGETKMAIDIELDTENHQLNRLGGVTFGDWWTHQLNQNRTVPHYRTEGKFVEFTRANAMI 5715
            L E  M ID +LDT+      + G TF +WW  QLN NR VPHYRTEG F+EFTRANA  
Sbjct: 1163 LEEKNMTIDFDLDTDTIVGKSIVGHTFKEWWDVQLNTNRIVPHYRTEGHFMEFTRANAPT 1222

Query: 5714 VANEIAHSDQTDFLVMGAVGSGKSTGLPFHLSRKGKVLMIEPTKPLAENVHKQLKGNPFM 5535
            +A++I+H   TD ++ GAVGSGKSTGLP+HLS+KG VL++EPT+PLAENV KQLK +PF 
Sbjct: 1223 IAHQISHDLHTDIMLRGAVGSGKSTGLPYHLSKKGTVLLLEPTRPLAENVTKQLKSDPFH 1282

Query: 5534 SNATLRMRGCSVFGSSPITVMTSGYALHYFAHNIAQLAEYQFVIIDECHVHDASAMAFRC 5355
             + TLRMRG +VFGS+PI VMT+G+ALHY A+N+  L  Y F+IIDE HVHD++A+A R 
Sbjct: 1283 VSPTLRMRGMAVFGSTPIHVMTTGFALHYLANNLKMLGTYDFIIIDEFHVHDSNAIALRN 1342

Query: 5354 LLLEYDYQGKVLKVSATPPGREATFNTQHPVLVKMEESLSFQQFVALQGSGANGDITQNG 5175
            LL E++YQGK++KVSATPPGRE  F+TQ+PV +++E+ +SFQ FV  QG+G+N D+T   
Sbjct: 1343 LLYEHNYQGKLIKVSATPPGREVEFSTQYPVEIRVEDQVSFQDFVKAQGNGSNLDLTSKC 1402

Query: 5174 DNILIYVASYNEVDTLSKMLLDKNHKVTKVDGRTMKMGQVEIPTAGTKEKKHFIVATNII 4995
            DN+L+YVASYNEVD LSK+LL+++  VTKVDGR+MK+GQVEI T G+  KKHFIVATNII
Sbjct: 1403 DNLLVYVASYNEVDQLSKLLLERHFLVTKVDGRSMKLGQVEIITKGSANKKHFIVATNII 1462

Query: 4994 ENGVTLDIDVVVDFGMKVVPELDIDNRLIRYSKVAISYGERIQRLGRVGRNKEGVALRIG 4815
            ENGVTLDID V+DFGMKVVP LD DNR+I Y+KV+ISYGERIQRLGRVGRNK GVALRIG
Sbjct: 1463 ENGVTLDIDAVIDFGMKVVPFLDSDNRMISYNKVSISYGERIQRLGRVGRNKAGVALRIG 1522

Query: 4814 VTEKGLSAVPNVTATEAAFYCFAYGLPVMTSGVAVSMLSNCTVNQARTMMHFELPLFYMV 4635
             TEKG+S VP V AT+AAF CF YGLP+ T  V   +LSN T+ QARTM+ FELP+FYM 
Sbjct: 1523 HTEKGISDVPVVIATQAAFLCFVYGLPISTQSVTTQVLSNVTLKQARTMVQFELPIFYMA 1582

Query: 4634 HMVRFDGSMHPELHKCLKDYKLRDSEIILNKMAIPSSGVKSWMTAGEYSRLGARNSIEEF 4455
            H+VR+DG+MHP +H  LK YKLRDSEI L+K+AIPS  V  WMT   Y  L   +   + 
Sbjct: 1583 HLVRYDGTMHPAIHNELKKYKLRDSEIQLSKLAIPSKCVPIWMTGKAYRLLTHNSQTPDA 1642

Query: 4454 VRIPFYARDIPDKVHERVWEVVVTFKRDAGFGKIQSASACKVAYTLQTDAASIPRTICII 4275
            VR+PF  ++IPDK+HE VW +V  FK DAG G++ SA A KVAYTL+TD  SI RTI II
Sbjct: 1643 VRVPFLTKEIPDKLHENVWAIVEKFKCDAGIGRMTSAQASKVAYTLETDIHSIQRTILII 1702

Query: 4274 EELIKNEVKKQEYFQVASGVDCGSGF-SLINITNALRSRHMSNHTAENIAILEAAKNQIY 4098
            ++L++ E++KQ +F++ +   C SG  SL  + NA++SR+  NHTA NI IL+ AK Q+ 
Sbjct: 1703 DQLLEREMQKQSHFEMVTNQSCSSGMSSLQTMMNAIQSRYAKNHTAGNIEILQRAKAQLL 1762

Query: 4097 EFRNLGIDPSSKTVC-DFGALECVQFQSAEGVSKQLKLKGHWNKSLITKDLLVAGFTLFG 3921
            EF NL  D  +++   +FG LE VQFQS   VS  L L+GHW KSLITKDLL+ G    G
Sbjct: 1763 EFSNLSGDILTESALREFGYLEAVQFQSGTQVSNFLGLEGHWKKSLITKDLLIVGGVCVG 1822

Query: 3920 GLWMLYNHFKRAATTLVEFQASGKRQSQKRRFQIARNHKHAYEVNPDQTDVEHYFGEAYA 3741
              WM+  +F + +  +V FQ   KRQ QK +F  AR+ K  + V    + +EHYFG AY 
Sbjct: 1823 AAWMIGEYFFKKSKEVVAFQGYNKRQRQKLKFARARDEKMGHYVEAPDSTLEHYFGSAYT 1882

Query: 3740 KKPQQKGRTKGMGAKSRRFYNIYGFDPAEYTFARYVDPLTGYTLDENALTDARLVQEHFG 3561
            KK + KG+T GMG K+ RF N+YGFDP++YTF RYVDPLTGYTLDE+  TD RL+Q  F 
Sbjct: 1883 KKGKTKGKTHGMGKKNHRFVNMYGFDPSDYTFIRYVDPLTGYTLDESPYTDIRLIQSQFS 1942

Query: 3560 KIRLELREQDKLDAQALMANQKIEAYFVKDLAKQILKIDMTPHRPLELGCKTSTIAGYPE 3381
             IR +    D+L+   +     ++ Y VKD   QILKID+TPH PL++   T+ IAG+P+
Sbjct: 1943 DIREQQLLNDELERNMVYHKPGVQGYLVKDKTSQILKIDLTPHIPLKVCDTTNNIAGHPD 2002

Query: 3380 REGELRQAAPHVIVDASVLPKQNEYTSEGAEFESKATYQGLRDYNSISSSICLLENDSDG 3201
            REGELRQ     ++D + LP++ E      EFES + ++G+RDYN ISS IC LEN+S+G
Sbjct: 2003 REGELRQTGKGQLLDYAELPQKKEL----VEFESTSMFRGVRDYNPISSVICQLENESEG 2058

Query: 3200 YTMKIHGIGFGSMIITNQHLFKRNNGSLKIQSHRGEFLVPNTTQLKMYPFEGRDLLLIQM 3021
             T ++ G+GFG  IITNQHLF RNNGSL ++S  G F V +T  L+M P EGRD+L+I+M
Sbjct: 2059 RTTQLFGLGFGPFIITNQHLFVRNNGSLTVRSQMGVFKVNSTVTLQMRPVEGRDVLIIKM 2118

Query: 3020 PKDFPPFPQKLKFRLPVSGERVCLIGSNFQEKYISSTVSESSVIAQKDNTSFFRHWITTQ 2841
            PKDFPPFPQ+LKFR P   E+VCLI +NFQ+K  SS VSE+S I  K+NT F++HWI+T+
Sbjct: 2119 PKDFPPFPQRLKFRQPTHSEKVCLILTNFQQKSSSSMVSETSHIIPKENTYFWKHWISTK 2178

Query: 2840 KGHCGLPLVSVKDGHILGIHSMTSLEDSSSFFISLPPDIGPKYLQNEENIEWTKKWRLNL 2661
            +GHCG P+VS  DG ILGIHS++++ ++S++F   P      YL  E   EW K W+ N 
Sbjct: 2179 EGHCGSPIVSTTDGAILGIHSLSNMTNTSNYFACFPKGFTETYLATESVHEWVKGWKFNA 2238

Query: 2660 ELINWGAFKLSNEKPDNLFKLSKDIFELLDEPVDFQAKEGGWLYDRLGGNITAMARTSNQ 2481
              + WG+F L + KP   FK  K + +LL E V  Q  +  WL++    NI A+A+  + 
Sbjct: 2239 SNVCWGSFHLQDSKPTKEFKTVKLVTDLLGEAVYTQGCDSKWLFNAAHTNIQAVAQLESN 2298

Query: 2480 LVTKHVVKGQCLLFQTYLETHPEASNFFKPLMGFYQKSRLNKEAYIKDLFKYNAPTTVGV 2301
            LVTKH VKG+C LF+TYL     A +FF   MGFY+ S+LN+EAY +DL KY+    VG 
Sbjct: 2299 LVTKHTVKGKCKLFETYLNVDKVAHDFFSKYMGFYKPSKLNREAYTQDLMKYSKVIQVGE 2358

Query: 2300 LNPHVFELAEESVYNMFVGIGFQKCVYVTDQEAIFSALNMKAATGALYQGKKKEYFENFT 2121
            ++  VFE A   + +     GF    Y+TD+++I++ALNMKAA GALY+GKK++YF+  +
Sbjct: 2359 VDCGVFESALTGLLHNLGRWGFTTACYITDEDSIYAALNMKAAVGALYRGKKRDYFDAMS 2418

Query: 2120 EADKAQILKDSCFRLYTGKLGVWNGSLKAELRPLEKVQANKTRSFTAAPIDTLLGGKVCV 1941
             +++  +L  SC RLY G+LGVWNGSLKAELRP EKV  NKTR+FTAAPI+TLLGGKVCV
Sbjct: 2419 PSEREHLLFLSCKRLYFGQLGVWNGSLKAELRPKEKVDLNKTRTFTAAPIETLLGGKVCV 2478

Query: 1940 DDFNNQFYSLNLKAPWSVGMTKFYGGWNTLIRSLPEGWIYCDADGSQFDSSLTPYLINAV 1761
            DDFNN FYSL+LKAPWSVGMTKFYG WN L+  LP+ W+YCDADGSQFDSS++PY+INAV
Sbjct: 2479 DDFNNMFYSLHLKAPWSVGMTKFYGTWNQLMCKLPDDWVYCDADGSQFDSSISPYMINAV 2538

Query: 1760 LNLRLRFMEDWDVGTQMLENLYTEIVYTPIATPDGTIVKKYKGNNSGQPSTVVDNTIMVI 1581
            L +RL FMEDWD+G+QML+NLYTEIVYTPI+TPDGT+VKK+KGNNSGQPSTVVDNT++V+
Sbjct: 2539 LRIRLHFMEDWDIGSQMLQNLYTEIVYTPISTPDGTVVKKFKGNNSGQPSTVVDNTLLVV 2598

Query: 1580 LAMHYASGLYNSDVAITE---YCVFFVNGDDLIIAVHPDHQAFLDGLKESFTHLGLKYDF 1410
            LAMHYA  L  S V + E    CV+ VNGDDL+IA+ PD +  LDG +  F+ LGL Y+F
Sbjct: 2599 LAMHYA--LLKSGVPLEEQDSVCVYCVNGDDLLIAIRPDMEHKLDGFQALFSELGLNYEF 2656

Query: 1409 SNRCQSREDLWFMSHKAILSGDIYIPKLEEERIVSILEWDRAILPEHRLEAICASMIEAW 1230
            ++R + ++DLWFMSHKAI  G+I IPKLEEERIVSILEWDR+  P HRLEAICASM+E+W
Sbjct: 2657 NSRSKDKKDLWFMSHKAIQCGEILIPKLEEERIVSILEWDRSHEPIHRLEAICASMVESW 2716

Query: 1229 GYPDLLYQIRRFYYWVLEQAPYNHLSQTGKAPYISEAALKNLYTN-QSSPSELQRYVDSL 1053
            GYP+L ++IRRFY WVLEQ+PYN L+ TG APYI+E+ALK LYTN   + +EL++Y  S+
Sbjct: 2717 GYPELTHEIRRFYAWVLEQSPYNALATTGLAPYIAESALKTLYTNVHPTSTELEKY--SI 2774

Query: 1052 EWNNLTGEE--AVEFQGTEDESLNAGDQTKKTSEAKGKDNKEKALETRPKDKDVDVGTSG 879
            +++    EE   V FQ    ++     Q  +  + +G+ N  +A+    KDKDVD+GT+G
Sbjct: 2775 QFDEQMDEEDDMVYFQAGTLDASETPAQKSEGRKKEGEGNSSRAVAV--KDKDVDLGTAG 2832

Query: 878  IYQVPKLKAIGTKFCLPKVKGRTIVNLDHLISYEPEQINLSNARATQSQFAQWYNGVKDA 699
             + VP+LK++ +K  LP +KG+++VNLDHL+SY+P+Q++LSNARAT  QF  WY+GV  +
Sbjct: 2833 THSVPRLKSMTSKLTLPMLKGKSVVNLDHLLSYKPKQVDLSNARATHEQFQNWYDGVMAS 2892

Query: 698  YELDDNSMGIVMSGLMVWCIENGTSPNINGQWTMMDGDEQVEYPLKPVVENAQPSLRQIM 519
            YEL+++SM I+++G MVWCIENGTSP+ING WTMMDG+EQV YPLKP++++A+PSLRQIM
Sbjct: 2893 YELEESSMEIILNGFMVWCIENGTSPDINGVWTMMDGEEQVSYPLKPMLDHAKPSLRQIM 2952

Query: 518  AHFSALAEAYIEKRNATKPYMPRYGLLRNLRDSSLARYAFDFYEVTSRTPPRAREAHLQM 339
             HFSALAEAYIE R+  KPYMPRYGL RNLRD SLARYAFDFYE+T+ TP RA+EAHLQM
Sbjct: 2953 RHFSALAEAYIEMRSREKPYMPRYGLQRNLRDQSLARYAFDFYEITATTPIRAKEAHLQM 3012

Query: 338  KAAAIRNSSTKMFGLDGNAGDKEEDTERHTANDVSKNMHSLMGVR 204
            KAAA++NS+T MFGLDGN    EEDTERHTA DV++NMH L+GV+
Sbjct: 3013 KAAALKNSNTNMFGLDGNVTTSEEDTERHTATDVNRNMHHLLGVK 3057


>ref|YP_008719787.1| polyprotein [Pokeweed mosaic virus] gi|400071383|gb|AFP66236.1|
            polyprotein [Pokeweed mosaic virus]
          Length = 3056

 Score = 2979 bits (7724), Expect = 0.0
 Identities = 1519/2925 (51%), Positives = 2025/2925 (69%), Gaps = 19/2925 (0%)
 Frame = -1

Query: 8918 LVRAVANIQKRTGVVIELISNRR-KVTANRLLKDNKRYVRVVTKHELGYRHKCDVRTGQW 8742
            L+R V  I ++  + +E++  R  K++  +    N    RV   H  G +   D++    
Sbjct: 158  LIRCVRKIARKNELTVEIVGKRAYKISPAKFRGCN--IPRVHVHHMDGKKRSIDLKIHPR 215

Query: 8741 D----RIVLKQLVEKSSGRLKHRADEFTPGSSGIALLSDKIDGQVSTSRGGVFIIRGRDG 8574
            D     I ++Q V K S       D+   G SG+  L + + G +S SR   FI+RG   
Sbjct: 216  DTEFLNICMRQFVTKQSVT----TDQLRNGDSGLMFLRNNVMGTISRSRDW-FIVRGSHE 270

Query: 8573 SKLYDSQCVVTTHVAARMHHYSVSERFWKGYDRGFQMARGPTDHTCDSNLDVEECGLVAA 8394
             KLYD+   VT  V   M+HYSV+E FW+G++  F   +  TDH C+SNL VE+CG VAA
Sbjct: 271  GKLYDATIRVTDAVRRTMNHYSVAETFWRGFNSWFLKHKATTDHQCESNLPVEDCGAVAA 330

Query: 8393 IATQALFPCGKITCQQCVDKFTSSGKSELREEHSARLEELIGRIQKNHPKFKHVIQXXXX 8214
            +  Q + PCG+ITC++C+ +             + R    I  ++   P+FKH I+    
Sbjct: 331  LLCQVVNPCGRITCEKCLQQIEDMTTKTFFSLVAERSRTTIEILRTKFPRFKHSIKLMER 390

Query: 8213 XXXXXXXXXXNVDQFSEVNRMIGERQETPFKQLADLNNLMIKIGSCTSEEVALGTAKILE 8034
                        + F EV  ++GER +  F+ +  LN+L        ++++    A +LE
Sbjct: 391  LMSIEEDNTAF-ESFREVRLLVGERNDGVFRHINKLNDLCALGKQADADQMKAIGANLLE 449

Query: 8033 IVRFQRNRTDNIAKGSLAHFRNKVSSKVHVNLDLMCDNQLDDDGNFRWRQRAYHAKRLFS 7854
            I RF +NRT++   GSL HFRNK+S K HVN  LMCDNQL  +GNF W +R YHAKR F+
Sbjct: 450  IARFMKNRTEHTKAGSLQHFRNKISGKAHVNPTLMCDNQLGKNGNFLWGKREYHAKRFFA 509

Query: 7853 NFFDVIDPANGYDQFIKRKNPNGMRKTAIGNLIVSTNMQTFRQQMRGEPMESVPLSNACT 7674
            N+FDVI P+ GYD+FI+R  PN  RK AIGNLIVSTN +  R Q+ GE +E   L++ACT
Sbjct: 510  NYFDVIIPSEGYDKFIERIGPNSKRKLAIGNLIVSTNFEKLRVQLEGERIEPESLTSACT 569

Query: 7673 SRLKGGFVYPCCCVTTDEGTPIESDMMIPTKDHLVIGNTGDSKFVNMPRMVEG-MYIAKQ 7497
            S+L G F YPCCCVT D+G P+ SD+ +PTK+HLV+GNTGDSK++++P   E  MYIAKQ
Sbjct: 570  SKLNGNFRYPCCCVTLDDGRPVYSDLKMPTKNHLVLGNTGDSKYLDLPVDTENKMYIAKQ 629

Query: 7496 GYCYVNIFLAMLINVSDAQSKDYTKKVRDIVIPKLGEWPTLLDVATMCHFLTVFYPDVKS 7317
            GYCY+NIFLAML+NV + Q+KD+TK VRD +IP LG WP+++DVAT C FL  FYPD  +
Sbjct: 630  GYCYINIFLAMLVNVDEEQAKDFTKMVRDTIIPALGTWPSMMDVATSCAFLVAFYPDTAN 689

Query: 7316 AELPRILVDHRNQIMHVIDSFGSLTTGYHILKANTVGQLVKFSNDELQSEMMHYRVGGTM 7137
            AELPRILVDH+NQ+MHVIDSFGSLTTGYH+LKANT+ QL +F+++ L+SEM HY+VGG  
Sbjct: 690  AELPRILVDHKNQMMHVIDSFGSLTTGYHVLKANTITQLTQFASNSLESEMKHYKVGGLS 749

Query: 7136 MSEESSEDAAVTLLARGVYRPTELKRVLEKDPLLLVYGLLSPRVLIAMHKSKTLEMALDQ 6957
              ++ S DAA+ LL  G++RP  LK +LE++P LLV G++SP VL+AM+ +   E AL  
Sbjct: 750  NCQDISHDAALQLLIHGIFRPKFLKEILEEEPYLLVMGIVSPNVLLAMYNNGVFEQALQM 809

Query: 6956 WLHKDTSVANLCQMIDVLAKKVSVSKLFRTQQQIISENAMEIARCVDRCRTTSPSRTFVQ 6777
            +L  D S+  +  +++ LA KVS + L   Q +II  +A  I   +   R T P+ +++ 
Sbjct: 810  FLRCDQSLTTMVAILNTLAVKVSGASLVVEQHRIIQSHAGLIMDQI--FRGTRPNFSYMT 867

Query: 6776 LVLTRLV-ESRN-TSKELLSAGFQTLMYEGEEMREKKFSEVLAHSWRDLNWSQRCSAIWH 6603
             +   LV ++RN T   L + G++T   E +E+ EK +   L  SW  L+W ++  AIWH
Sbjct: 868  AINYLLVVDARNETDAGLEAIGYRTFFEETQEICEKNYIARLEASWAGLSWLEKSYAIWH 927

Query: 6602 SRKASQHATNSSIEPEQTDSGETWTERFICLRGKLTSHVKVWTTSALSNGKRKAYETCGK 6423
            SRK  Q           T S    +       G++T  VK      ++ G+    +   K
Sbjct: 928  SRKYLQFGRRLRKFKNTTLSSPVCSMSITQCAGQITQSVKQTGCKIITGGRNGMTKLYSK 987

Query: 6422 VVCKLITSTKFFCPDIIKMVNVLSVFCLLLQISTVVNRHLLQYRILKEEQQNMRDDKDFE 6243
             +    +  +   PD +K++N+L     L+ I+      L +++ LK E    +   + E
Sbjct: 988  TMLFCFSRLRKLLPDFLKLLNILLCLSALVAIAQGTASMLNEHKRLKMEIAEKKFKNNEE 1047

Query: 6242 TMMGIYNLYVKTYEGEYPTLKQFSTYLQKVNPQIYAYYERTMGEPDDTDECVELQAKGKG 6063
             ++   N Y   +     T + F   L+  + ++Y +Y+     P      V  Q     
Sbjct: 1048 HLVRFKNYY--DFSHPDGTEEDFLETLKDSSAELYGHYKDVYVAPKPG---VVFQDAKSD 1102

Query: 6062 EIELERTIAFVALIMMMFDAERSDCVYKVLNKLRGIMNPISAETVAFQGLDDMKELLGET 5883
              ++E+ IA +ALI+M+FD +RSDCVY+ LNK +G+M+ + A+ V+FQ +DD+K  L E 
Sbjct: 1103 SRKMEQGIAMIALILMVFDTDRSDCVYRTLNKFKGVMSSLYAKPVSFQSIDDIKPTLEEK 1162

Query: 5882 KMAIDIELDTENHQLNRLGGVTFGDWWTHQLNQNRTVPHYRTEGKFVEFTRANAMIVANE 5703
             M +DI L  ++        +TF  WW+ QL++N   PHYRTEGKF+EFTR+ A  +A +
Sbjct: 1163 NMTVDIVLSGDDAVSTNTQEITFEKWWSLQLHRNAVRPHYRTEGKFIEFTRSQAAAIALQ 1222

Query: 5702 IAHSDQTDFLVMGAVGSGKSTGLPFHLSRKGKVLMIEPTKPLAENVHKQLKGNPFMSNAT 5523
            IAH+D+ DFL+ G VGSGKSTGLPFHLS+KG VL+IEPT+PL ENV KQL+ +PF +  T
Sbjct: 1223 IAHADENDFLIRGNVGSGKSTGLPFHLSKKGSVLLIEPTRPLTENVTKQLRHDPFYAKPT 1282

Query: 5522 LRMRGCSVFGSSPITVMTSGYALHYFAHNIAQLAEYQFVIIDECHVHDASAMAFRCLLLE 5343
            +RMRG S FGS PIT+MT+G+ALH++A+N+ QL    F+I DECHV DASAMAFR LL E
Sbjct: 1283 IRMRGLSAFGSDPITIMTTGFALHFYANNMDQLKNLDFIIFDECHVTDASAMAFRNLLYE 1342

Query: 5342 YDYQGKVLKVSATPPGREATFNTQHPVLVKMEESLSFQQFVALQGSGANGDITQNGDNIL 5163
             DY+GKV+K SATPPGRE  F TQ+PV +++EESLSF +FV  QG G N D+ Q GDNIL
Sbjct: 1343 VDYKGKVIKASATPPGREGEFKTQYPVDLRVEESLSFDEFVTAQGKGTNADVVQRGDNIL 1402

Query: 5162 IYVASYNEVDTLSKMLLDKNHKVTKVDGRTMKMGQVEIPTAGTKEKKHFIVATNIIENGV 4983
            +YVASYNEVD LSK+L+D+   VTK+DGRTMK+G  EI T GT EKKHF+VATNIIENGV
Sbjct: 1403 VYVASYNEVDQLSKLLIDRKFHVTKIDGRTMKIGSTEIKTCGTAEKKHFLVATNIIENGV 1462

Query: 4982 TLDIDVVVDFGMKVVPELDIDNRLIRYSKVAISYGERIQRLGRVGRNKEGVALRIGVTEK 4803
            TLDIDVVVDFG+KV P LD DNR++ Y KV+ISYGERIQRLGRVGR+K GVALRIG TEK
Sbjct: 1463 TLDIDVVVDFGVKVQPTLDCDNRMVSYRKVSISYGERIQRLGRVGRHKAGVALRIGHTEK 1522

Query: 4802 GLSAVPNVTATEAAFYCFAYGLPVMTSGVAVSMLSNCTVNQARTMMHFELPLFYMVHMVR 4623
            G+  +P + ATEAAF CF YGLPV T  V+VS+LS CTV QARTM+ FELP+FY  H+VR
Sbjct: 1523 GIMEIPPIVATEAAFLCFTYGLPVTTQNVSVSLLSQCTVKQARTMVQFELPIFYTQHLVR 1582

Query: 4622 FDGSMHPELHKCLKDYKLRDSEIILNKMAIPSSGVKSWMTAGEYSRLGARNSIEEFVRIP 4443
            FDG+MHP +H  LK +KLRDSE ILNK+++P      W++   Y  L    ++ E V+IP
Sbjct: 1583 FDGTMHPAIHNILKRFKLRDSETILNKLSLPYKQTAVWLSGKAYRNL-IGTTLPETVKIP 1641

Query: 4442 FYARDIPDKVHERVWEVVVTFKRDAGFGKIQSASACKVAYTLQTDAASIPRTICIIEELI 4263
            F+ +D+PDK+HE VW+ +   K+DAG G++  A A KVAYTLQTD  +IPRT+ II+ L+
Sbjct: 1642 FFVKDVPDKMHEEVWDAIQQHKQDAGIGRLTMAQATKVAYTLQTDIHAIPRTLRIIDLLL 1701

Query: 4262 KNEVKKQEYFQ-VASGVDCGSGFSLINITNALRSRHMSNHTAENIAILEAAKNQIYEFRN 4086
            + E  K+ +F+ VAS     + FSL +I  +LRS +  NHTAENI IL+ A+ Q+ EF N
Sbjct: 1702 EAEQTKKNHFESVASQSLSSTNFSLSSIMTSLRSHYTRNHTAENIEILQKARAQLLEFAN 1761

Query: 4085 LGIDPS-SKTVCDFGALECVQFQSAEGVSKQLKLKGHWNKSLITKDLLVAGFTLFGGLWM 3909
            LG DPS ++ V +F  LE V+FQS  GV++ LKLKG W KSLIT+DLL+      GGL+M
Sbjct: 1762 LGHDPSATELVKNFYYLEAVEFQSQAGVAQALKLKGIWKKSLITRDLLIIFCVFIGGLYM 1821

Query: 3908 LYNHFKRAATTLVEFQASGKRQSQKRRFQIARNHKHAYEVNPDQTDVEHYFGEAYAKKPQ 3729
            +  +F     + V+F+ + K ++Q+ RF+ AR+ K  YEV+ D   +EH+FG AY +K +
Sbjct: 1822 ILLYFYETFHSEVKFEGA-KHKNQRLRFRNARDRKLGYEVHADDDTIEHFFGAAYTEKGK 1880

Query: 3728 QKGRTKGMGAKSRRFYNIYGFDPAEYTFARYVDPLTGYTLDENALTDARLVQEHFGKIRL 3549
            +KG+T GMG K+RRF ++YG+DP +YTF R+VDPLTG TLD++  TD  L+Q+ FG+ R+
Sbjct: 1881 KKGKTHGMGKKNRRFTHMYGYDPTDYTFVRFVDPLTGKTLDDSPYTDINLIQQAFGEERI 1940

Query: 3548 ELREQDKLDAQALMANQKIEAYFVKDLAKQILKIDMTPHRPLELGCKTSTIAGYPEREGE 3369
             +  +D+LD Q +M +  ++AY+     ++ L++D+TPH PL +G  T++I+G+PEREGE
Sbjct: 1941 RMIGEDELDPQQIMNSPGLKAYYGNQTTRKALEVDLTPHNPLLVGRNTNSISGFPEREGE 2000

Query: 3368 LRQAAPHVIVDASVLPKQNEYTSEGAEFESKATYQGLRDYNSISSSICLLENDSDGYTMK 3189
            LRQ      ++   +P+++E       FES +  +G+RDYN I+S IC L N+S+G T  
Sbjct: 2001 LRQTGQARPINFDQIPREDE-----VSFESLSMLRGVRDYNPIASVICQLTNESEGETTT 2055

Query: 3188 IHGIGFGSMIITNQHLFKRNNGSLKIQSHRGEFLVPNTTQLKMYPFEGRDLLLIQMPKDF 3009
            +HGIG+G  IITNQHLFKRNNG+LKI S  G F V NT  L + P +G+D+L++++PKDF
Sbjct: 2056 LHGIGYGPYIITNQHLFKRNNGNLKIISQHGTFRVHNTCNLPLLPIKGQDVLIMRLPKDF 2115

Query: 3008 PPFPQKLKFRLPVSGERVCLIGSNFQEKYISSTVSESSVIAQKDNTSFFRHWITTQKGHC 2829
            PPFPQ++KFR P  GERVC++ SNFQ K ISS VSE+S I    N+SF++HWI+T+ GHC
Sbjct: 2116 PPFPQRIKFRTPEKGERVCIVMSNFQTKSISSMVSETSHIYPVPNSSFWKHWISTKNGHC 2175

Query: 2828 GLPLVSVKDGHILGIHSMTSLEDSSSFFISLPPDIGPKYLQNEENIEWTKKWRLNLELIN 2649
            G P+V+ +DG ILGIHS+ + +++ ++F         K+ +   N +WTK W+ N   I 
Sbjct: 2176 GSPIVATRDGAILGIHSIANTDNTGNYFTCFGEKFSEKFDELVANGDWTKGWKFNANTIA 2235

Query: 2648 WGAFKLSNEKPDNLFKLSKDIFELL-DEPVDFQA--KEGGWLYDRLGGNITAMARTSNQL 2478
            WG+  L +  P+  FK++K I +L+    V  QA  +   W+YD L  N+  MA    +L
Sbjct: 2236 WGSLYLKDSVPEETFKITKLIQDLVGGSEVCLQATTQSKKWMYDALEDNLRPMATMDGKL 2295

Query: 2477 VTKHVVKGQCLLFQTYLETHPEASNFFKPLMGFYQKSRLNKEAYIKDLFKYNAPTTVGVL 2298
            VTKH VKG+C LF TYL+   +A  +F PLMG Y+ SRLNKEAYIKDL KY++   +G++
Sbjct: 2296 VTKHTVKGKCSLFATYLQVDQQAQQYFTPLMGSYKPSRLNKEAYIKDLMKYSSVIDIGLV 2355

Query: 2297 NPHVFELAEESVYNMFVGIGFQKCVYVTDQEAIFSALNMKAATGALYQGKKKEYFENFTE 2118
            +   FE AE  +Y   V  GF+ C Y+ D+E+I ++LNMKAA GALYQGKK++YF+    
Sbjct: 2356 DCEAFERAERKLYQRLVEWGFETCDYINDEESILASLNMKAAVGALYQGKKRDYFQGMDN 2415

Query: 2117 ADKAQILKDSCFRLYTGKLGVWNGSLKAELRPLEKVQANKTRSFTAAPIDTLLGGKVCVD 1938
               A ++K SC RL+ GKLG+WNGSLKAELRP EKV  NKTR+FTAAP+DTLLGGKVCVD
Sbjct: 2416 QSVANLIKASCKRLFLGKLGIWNGSLKAELRPEEKVSQNKTRTFTAAPLDTLLGGKVCVD 2475

Query: 1937 DFNNQFYSLNLKAPWSVGMTKFYGGWNTLIRSLPEGWIYCDADGSQFDSSLTPYLINAVL 1758
            DFNNQFYSLNLK PWSVGMTKFYGGWN+L+  LP+GW+YCDADGSQFDSSL+PYLINAVL
Sbjct: 2476 DFNNQFYSLNLKCPWSVGMTKFYGGWNSLMTQLPDGWLYCDADGSQFDSSLSPYLINAVL 2535

Query: 1757 NLRLRFMEDWDVGTQMLENLYTEIVYTPIATPDGTIVKKYKGNNSGQPSTVVDNTIMVIL 1578
            NLRL FMEDW++G QML+NLYTEIVYTPIATPDGTIVKK+KGNNSGQPSTVVDNT+MVIL
Sbjct: 2536 NLRLSFMEDWELGEQMLKNLYTEIVYTPIATPDGTIVKKFKGNNSGQPSTVVDNTLMVIL 2595

Query: 1577 AMHYASGLYNSDVAITEY-CVFFVNGDDLIIAVHPDHQAFLDGLKESFTHLGLKYDFSNR 1401
            AM+Y+  +++    ++E+ CVFFVNGDDL+IA+ P+ + FLDGL E+F  LGLKYDFS+R
Sbjct: 2596 AMYYSFEIHD----LSEHDCVFFVNGDDLLIAIQPEKEKFLDGLSETFRTLGLKYDFSSR 2651

Query: 1400 CQSREDLWFMSHKAILSGDIYIPKLEEERIVSILEWDRAILPEHRLEAICASMIEAWGYP 1221
             + REDLWFMSH AI    IYIPKLE ERIVSILEWDR+  P HRLEAICA+MIE+WGY 
Sbjct: 2652 TKRREDLWFMSHCAIKREGIYIPKLEPERIVSILEWDRSSEPTHRLEAICAAMIESWGYD 2711

Query: 1220 DLLYQIRRFYYWVLEQAPYNHLSQTGKAPYISEAALKNLYTNQS-SPSELQRYVDSLEWN 1044
             L ++IRRFY WVLEQAPY  L+Q GKAPY++E+AL+NLY +++ + SELQ+Y+     +
Sbjct: 2712 QLTHEIRRFYKWVLEQAPYAQLAQEGKAPYLAESALRNLYLDKTPTESELQQYISCFYED 2771

Query: 1043 NLTGEEAVEFQGTEDESLNAGDQTKKTSEAKGKD--NKEKALETRPK--DKDVDVGTSGI 876
             LT +E +E     D +   G  +K+  +        +++A    P+  D DV+VGT G 
Sbjct: 2772 ELT-DEQIEVYFQSDVNAGVGRPSKQHDQPSSSQQIQQQQAAPPTPQHGDSDVNVGTRGT 2830

Query: 875  YQVPKLKAIGTKFCLPKVKGRTIVNLDHLISYEPEQINLSNARATQSQFAQWYNGVKDAY 696
            + VP+LK   +K  LPK+KG+ IVNLDHL+ Y+PEQ ++SNA+ATQSQ + WY+ VK +Y
Sbjct: 2831 FSVPRLKGSISKMSLPKLKGKPIVNLDHLLGYDPEQTSISNAKATQSQLSVWYDTVKASY 2890

Query: 695  ELDDNSMGIVMSGLMVWCIENGTSPNINGQWTMMDGDEQVEYPLKPVVENAQPSLRQIMA 516
            ++DD +M I+++GLMVWCIENGTSPNING W MMDGDEQ+EYPLKP+VENA+P+LRQIM 
Sbjct: 2891 DVDDEAMKILLNGLMVWCIENGTSPNINGSWVMMDGDEQIEYPLKPIVENAKPTLRQIMM 2950

Query: 515  HFSALAEAYIEKRNATKPYMPRYGLLRNLRDSSLARYAFDFYEVTSRTPPRAREAHLQMK 336
            HFS LAEAYIEKRN  + YMPRYGL+RNL D +LARYAFDFYEVTSRTP RAREAH+QMK
Sbjct: 2951 HFSDLAEAYIEKRNLKEKYMPRYGLIRNLTDMTLARYAFDFYEVTSRTPARAREAHIQMK 3010

Query: 335  AAAIRNSSTKMFGLDGNAGDKEEDTERHTANDVSKNMHSLMGVRM 201
            AAA+RN+STKMFGLDGN G KEE+TERHTA DVS+ MH+LMGVRM
Sbjct: 3011 AAALRNASTKMFGLDGNVGTKEENTERHTAEDVSREMHNLMGVRM 3055


>emb|CAB58241.1| polyprotein [Potato virus A]
          Length = 3058

 Score = 2979 bits (7722), Expect = 0.0
 Identities = 1513/2925 (51%), Positives = 2015/2925 (68%), Gaps = 13/2925 (0%)
 Frame = -1

Query: 8939 VHYDWLNLVRAVANIQKRTGVVIELISNRRKVTANRLLKDNKRYV-RVVTKHELGYRHKC 8763
            V Y    L R + N+ KRTG+ +E++    K T  R  K    ++ RV  KH  G  H+ 
Sbjct: 156  VPYSVQQLCRTLGNLSKRTGITLEIVGKNPKATKLRFTKTVFGHMARVQLKHHNGMMHRR 215

Query: 8762 DVRTGQWDRIVLKQLVEKSSGRLKHRADEFTPGSSGIALLSDKIDGQVSTSRGGVFIIRG 8583
            D+   +    +++ L  K++ +     D  T GSSG+   +  + GQ   +R    ++RG
Sbjct: 216  DLVVDRSTTAIMQTLFSKTA-KTSANLDVLTHGSSGLVFWNYVVSGQRMRTRDNFIVVRG 274

Query: 8582 RDGSKLYDSQCVVTTHVAARMHHYSVSERFWKGYDRGFQMARGPT--DHTCDSNLDVEEC 8409
            R    L D++  ++       HHYS  + FW+G+++ F +   P   DH C S+  VEEC
Sbjct: 275  RCNGILVDARAKLSESTMLATHHYSTGDVFWRGFNKTF-LENKPINLDHVCSSDFSVEEC 333

Query: 8408 GLVAAIATQALFPCGKITCQQCVDKFTSSGKSELREEHSARLEELIGRIQKNHPKFKHVI 8229
            G +AA+  Q+L PCGKITC+ C  K  S  +   +E  + R  E+   I   HP F  V 
Sbjct: 334  GSIAALICQSLLPCGKITCRTCAAKNLSMDEDTFKEFQTQRAREMSAIILSKHPNFACVS 393

Query: 8228 QXXXXXXXXXXXXXXNVDQFSEVNRMIGERQETPFKQLADLNNLMIKIGSCTSEEVALGT 8049
            Q              NV+ + E+ ++ G   + P+  L +LN +++  G  T E+++  +
Sbjct: 394  QFIERYFSHQRVLNPNVNAYREILKIAGGFTQAPYIHLQELNEILVLGGRATPEQLSSAS 453

Query: 8048 AKILEIVRFQRNRTDNIAKGSLAHFRNKVSSKVHVNLDLMCDNQLDDDGNFRWRQRAYHA 7869
            A +LEI RF RNRTDNI KGSLA FRNK+S+K HVN  LMCDNQLD +GN  W +R YHA
Sbjct: 454  AHLLEITRFVRNRTDNIKKGSLALFRNKISAKAHVNTALMCDNQLDKNGNLIWGERGYHA 513

Query: 7868 KRLFSNFFDVIDPANGYDQFIKRKNPNGMRKTAIGNLIVSTNMQTFRQQMRGEPMESVPL 7689
            KR FSN+FD+I P  GY Q+I+R+ PNG+RK AIGNLIV+TN++  R+Q+ GEP+E   +
Sbjct: 514  KRFFSNYFDIITPGGGYKQYIERRVPNGVRKLAIGNLIVTTNLEALREQLEGEPVEKKAI 573

Query: 7688 SNACTSRLKGGFVYPCCCVTTDEGTPIESDMMIPTKDHLVIGNTGDSKFVNMPRMVEG-M 7512
            + AC S     + YPCCCVT D+GTP+ S  ++PTK+HLVIGN+GD KF+++P  +   M
Sbjct: 574  TKACVSMSDNNYKYPCCCVTLDDGTPLYSAFIMPTKNHLVIGNSGDPKFLDLPTDISTQM 633

Query: 7511 YIAKQGYCYVNIFLAMLINVSDAQSKDYTKKVRDIVIPKLGEWPTLLDVATMCHFLTVFY 7332
            YIAK GYCY+NIFLAML+NV +  +KD+TKKVRDI++P LGEWPTL+DVAT C  L+ FY
Sbjct: 634  YIAKSGYCYINIFLAMLVNVDEPDAKDFTKKVRDIIVPDLGEWPTLIDVATSCSLLSAFY 693

Query: 7331 PDVKSAELPRILVDHRNQIMHVIDSFGSLTTGYHILKANTVGQLVKFSNDELQSEMMHYR 7152
            P   +AELPRILVDH  + MHVIDS+GSL TGYH+LKANTV QL++F+++ L SEM HYR
Sbjct: 694  PATSAAELPRILVDHDLKTMHVIDSYGSLNTGYHVLKANTVRQLIQFASNSLDSEMKHYR 753

Query: 7151 VGGTMMSEESSEDAAVTLLARGVYRPTELKRVLEKDPLLLVYGLLSPRVLIAMHKSKTLE 6972
            VGGT  S+ +   + + +LA+ VYRP  ++ ++ + P +LV  L+SP VLIA+  S  LE
Sbjct: 754  VGGTSNSQINGY-STIKMLAKAVYRPKLMREIIHEQPYMLVMSLMSPGVLIALANSGALE 812

Query: 6971 MALDQWLHKDTSVANLCQMIDVLAKKVSVSKLFRTQQQIISENAMEIARCVDRCRTTSPS 6792
            M +  W+ +  S+  +  M+  LA+ VSV++    QQ+IIS++A ++   +     T P+
Sbjct: 813  MGIHHWIREGDSLVKMAHMLRTLAQNVSVARATWVQQEIISDSAQQMLEII--LNGTIPN 870

Query: 6791 RTFVQLV--LTRLVESRNTSKELLSAGFQTLMYEGEEMREKKFSEVLAHSWRDLNWSQRC 6618
             ++ Q +  LT L  S+    E+   G+ T   +  E+ EK +  +L  SW++L++  R 
Sbjct: 871  ISYFQAIQYLTMLAASKEADAEVRVTGYYTFKLQASELLEKTYLSLLEDSWQELSYFGRF 930

Query: 6617 SAIWHSRKASQHATNSSIEPEQTDSGETWTERFICLRGKLTSHVKVWTTSALSNGKRKAY 6438
             AI HSRK     T      +  D G  +   +     K   + K     A++  + + +
Sbjct: 931  QAIRHSRKFCTTGTIVVKPEKHVDLGGIYATSYQFALAKQMEYSKKAVYQAVNGLQVRFH 990

Query: 6437 ETCGKVVCKLITSTKFFCPDIIKMVNVLSVFCLLLQISTVVNRHLLQYRILKEEQQNMRD 6258
                KV CK++   K   PD++K +N +    + LQ+       L  ++  K++   +  
Sbjct: 991  NITSKVYCKILNWPKRLFPDLVKFINTMLAITVALQLYIAFATILRHHQQCKQDSLELEY 1050

Query: 6257 DKDFETMMGIYNLYVKTYEGEYPTLKQFSTYLQKVNPQIYAYYERTMGEPDDTDECVELQ 6078
             K  + ++ +Y+ ++  +   + T ++F T++   NP +  +      E       V  Q
Sbjct: 1051 RKKEKQLITLYDFFIAKHP--HATEEEFITHVDDQNPDLSTFVREYCAE------VVLFQ 1102

Query: 6077 AKGKGEIELERTIAFVALIMMMFDAERSDCVYKVLNKLRGIMNPISAETVAFQGLDDMKE 5898
            AK   ++  ER IAFV+L++MMFD+ERSDCVY+ L KL+ +M+ +   TV FQ LDD+  
Sbjct: 1103 AKASEQVNFERIIAFVSLVLMMFDSERSDCVYRSLTKLKSLMSTVE-NTVQFQSLDDIGP 1161

Query: 5897 LLGETKMAIDIELDTENHQLNRLGGVTFGDWWTHQLNQNRTVPHYRTEGKFVEFTRANAM 5718
             L E  M ID +LDT+      + G TF +WW  QLN NR VPHYRTEG F+EFTRANA 
Sbjct: 1162 TLEEKNMTIDFDLDTDTIVGKSIVGHTFKEWWDAQLNTNRIVPHYRTEGHFMEFTRANAP 1221

Query: 5717 IVANEIAHSDQTDFLVMGAVGSGKSTGLPFHLSRKGKVLMIEPTKPLAENVHKQLKGNPF 5538
             +A++I+H   TD ++ GAVGSGKSTGLP+HLS+KG VL++EPT+PLAENV KQLK +PF
Sbjct: 1222 TIAHQISHDLHTDIMLRGAVGSGKSTGLPYHLSKKGTVLLLEPTRPLAENVTKQLKSDPF 1281

Query: 5537 MSNATLRMRGCSVFGSSPITVMTSGYALHYFAHNIAQLAEYQFVIIDECHVHDASAMAFR 5358
              + TLRMRG +VFGS+PI VMT+G+ALHY A+N+  L+ Y F+IIDE HVHD++A+A R
Sbjct: 1282 HVSPTLRMRGMAVFGSTPIHVMTTGFALHYLANNLKMLSTYDFIIIDEFHVHDSNAIALR 1341

Query: 5357 CLLLEYDYQGKVLKVSATPPGREATFNTQHPVLVKMEESLSFQQFVALQGSGANGDITQN 5178
             LL E++YQGK++KVSATPPGRE  F+TQHPV +++E+ +SFQ FV  QG+G+N D+   
Sbjct: 1342 NLLHEHNYQGKLIKVSATPPGREVEFSTQHPVEIRVEDQVSFQDFVKAQGNGSNLDLISK 1401

Query: 5177 GDNILIYVASYNEVDTLSKMLLDKNHKVTKVDGRTMKMGQVEIPTAGTKEKKHFIVATNI 4998
             DN+L+YVASYNEVD LSK+LL+++  VTKVDGR+MK+GQVEI T G   +KHFIVATNI
Sbjct: 1402 CDNLLVYVASYNEVDQLSKLLLERHFLVTKVDGRSMKLGQVEIITKGNAARKHFIVATNI 1461

Query: 4997 IENGVTLDIDVVVDFGMKVVPELDIDNRLIRYSKVAISYGERIQRLGRVGRNKEGVALRI 4818
            IENGVTLDID V+DFGMKVVP LD DNR+I Y+KV+ISYGERIQRLGRVGRNK GVALRI
Sbjct: 1462 IENGVTLDIDAVIDFGMKVVPFLDSDNRMISYNKVSISYGERIQRLGRVGRNKAGVALRI 1521

Query: 4817 GVTEKGLSAVPNVTATEAAFYCFAYGLPVMTSGVAVSMLSNCTVNQARTMMHFELPLFYM 4638
            G TEKG+S VP V AT+AAF CF YGLP+ T  V   + SN T+ QARTM+ FELP+FYM
Sbjct: 1522 GHTEKGISDVPVVVATQAAFLCFVYGLPISTQSVTTQVPSNVTLKQARTMVQFELPIFYM 1581

Query: 4637 VHMVRFDGSMHPELHKCLKDYKLRDSEIILNKMAIPSSGVKSWMTAGEYSRLGARNSIEE 4458
             H+VR+DG+MHP +H  LK YKLRDSEI L K+AIPS  V  WMT   Y  L   + I +
Sbjct: 1582 AHLVRYDGTMHPAIHNELKKYKLRDSEIQLCKLAIPSKCVPIWMTGKAYRLLTHNSQIPD 1641

Query: 4457 FVRIPFYARDIPDKVHERVWEVVVTFKRDAGFGKIQSASACKVAYTLQTDAASIPRTICI 4278
             VR+PF  +D+PDK+HE +W +V  FK DAG G++ SA A KVAYTL+TD  S+ RTI I
Sbjct: 1642 DVRVPFLTKDVPDKLHESIWGIVEKFKCDAGIGRMTSAQASKVAYTLETDIHSVQRTILI 1701

Query: 4277 IEELIKNEVKKQEYFQVASGVDCGSG-FSLINITNALRSRHMSNHTAENIAILEAAKNQI 4101
            I++L++ E++KQ +F++ +   C SG  SL  + NA++SR+  N TA NI IL+ AK Q+
Sbjct: 1702 IDQLLEREMQKQSHFEMVTNQSCSSGMLSLQTMMNAIQSRYAKNLTAGNIEILQKAKAQL 1761

Query: 4100 YEFRNLGIDPSSKTVC-DFGALECVQFQSAEGVSKQLKLKGHWNKSLITKDLLVAGFTLF 3924
             EF NL  D S+++   +FG LE VQFQS   V+  L L+GHW KSLITKDLL+ G    
Sbjct: 1762 LEFSNLSGDVSTESALREFGYLEAVQFQSKTQVANFLGLEGHWKKSLITKDLLIVGGVCV 1821

Query: 3923 GGLWMLYNHFKRAATTLVEFQASGKRQSQKRRFQIARNHKHAYEVNPDQTDVEHYFGEAY 3744
            G  WM+  +F R +  ++ FQ   KRQ QK +F  AR+ K  + V    + +EHYFG AY
Sbjct: 1822 GAAWMIGEYFFRKSKEVISFQGYNKRQRQKLKFARARDEKMGHYVEAPDSTLEHYFGSAY 1881

Query: 3743 AKKPQQKGRTKGMGAKSRRFYNIYGFDPAEYTFARYVDPLTGYTLDENALTDARLVQEHF 3564
             KK + KG+T GMG K+ RF N+YGFDP++YTF RYVDPLTGYTLDE+  TD RLVQ  F
Sbjct: 1882 TKKGKTKGKTHGMGKKNHRFVNMYGFDPSDYTFIRYVDPLTGYTLDESPYTDIRLVQSQF 1941

Query: 3563 GKIRLELREQDKLDAQALMANQKIEAYFVKDLAKQILKIDMTPHRPLELGCKTSTIAGYP 3384
            G  R E    D+L+   +     I+ Y VKD   QILKID+TPH PL++   T+ IAG+P
Sbjct: 1942 GAFRDEQILNDELERSLIHHRPGIQGYLVKDKTSQILKIDLTPHIPLKVCDTTNNIAGHP 2001

Query: 3383 EREGELRQAAPHVIVDASVLPKQNEYTSEGAEFESKATYQGLRDYNSISSSICLLENDSD 3204
            EREGELRQ     +++ + LP++ E      EFES +  +G+RDYN ISS IC LEN+S+
Sbjct: 2002 EREGELRQTGKGQLLEYAELPQKKEI----VEFESTSMSRGVRDYNPISSVICQLENESE 2057

Query: 3203 GYTMKIHGIGFGSMIITNQHLFKRNNGSLKIQSHRGEFLVPNTTQLKMYPFEGRDLLLIQ 3024
            G T ++ GIGFG  I+TNQHLF RNNGSL ++S  G F V +TT L+M P EGRD+L+I+
Sbjct: 2058 GRTTQLFGIGFGPFIVTNQHLFVRNNGSLTVRSQMGVFKVNSTTTLQMRPVEGRDVLIIK 2117

Query: 3023 MPKDFPPFPQKLKFRLPVSGERVCLIGSNFQEKYISSTVSESSVIAQKDNTSFFRHWITT 2844
            MPKDFPPFPQ+LKFR P   E+VCLI +NFQ+K  SS VSE+S I  K+NT F++HWI+T
Sbjct: 2118 MPKDFPPFPQRLKFRQPTHSEKVCLILTNFQQKSSSSMVSETSHIIPKENTYFWKHWIST 2177

Query: 2843 QKGHCGLPLVSVKDGHILGIHSMTSLEDSSSFFISLPPDIGPKYLQNEENIEWTKKWRLN 2664
            ++GHCG P+VS  DG ILGIHS++++ ++ ++F   P      YL NE   EW K W+ N
Sbjct: 2178 KEGHCGSPIVSTTDGAILGIHSLSNMTNTGNYFACFPKGFTETYLVNESAHEWLKDWKFN 2237

Query: 2663 LELINWGAFKLSNEKPDNLFKLSKDIFELLDEPVDFQAKEGGWLYDRLGGNITAMARTSN 2484
               + WG+F L + KP   FK  K + +LL+E V  Q  +  WLY+    NI  +A+  +
Sbjct: 2238 ANNVCWGSFHLQDSKPTKEFKTVKLVTDLLEEAVYTQGFDSKWLYNAAHTNIQVVAQLDS 2297

Query: 2483 QLVTKHVVKGQCLLFQTYLETHPEASNFFKPLMGFYQKSRLNKEAYIKDLFKYNAPTTVG 2304
             LVTKH VKG+C LF+TYL     A +FF   MGFY+ S+LN+EAY KDL KY+    VG
Sbjct: 2298 NLVTKHTVKGKCKLFETYLNVDKVAHDFFSKYMGFYKPSKLNREAYTKDLMKYSKVIQVG 2357

Query: 2303 VLNPHVFELAEESVYNMFVGIGFQKCVYVTDQEAIFSALNMKAATGALYQGKKKEYFENF 2124
             ++  VFE A   + +     GF    Y TD+E+I++ALNMKAA GALY+GKK++YF+  
Sbjct: 2358 EVDCEVFESALTGLLHNLKRWGFTTACYTTDEESIYAALNMKAAVGALYRGKKRDYFDAM 2417

Query: 2123 TEADKAQILKDSCFRLYTGKLGVWNGSLKAELRPLEKVQANKTRSFTAAPIDTLLGGKVC 1944
            + ++K  +L  SC RLYTG+LGVWNGSLKAELRP EKV  NKTR+FTAAPI+TLLGGKVC
Sbjct: 2418 SPSEKEHLLFLSCKRLYTGQLGVWNGSLKAELRPNEKVDLNKTRTFTAAPIETLLGGKVC 2477

Query: 1943 VDDFNNQFYSLNLKAPWSVGMTKFYGGWNTLIRSLPEGWIYCDADGSQFDSSLTPYLINA 1764
            VDDFNN FYSL+LKAPWSVGMTKFYG WN L+  LPEGW+YCDADGSQFDSS++PY+INA
Sbjct: 2478 VDDFNNMFYSLHLKAPWSVGMTKFYGTWNQLMCKLPEGWVYCDADGSQFDSSISPYMINA 2537

Query: 1763 VLNLRLRFMEDWDVGTQMLENLYTEIVYTPIATPDGTIVKKYKGNNSGQPSTVVDNTIMV 1584
            VL +RL FME+WD+G+QML++LYTEIVYTPI+TPDGT+VKK+KGNNSGQPSTVVDNT++V
Sbjct: 2538 VLRIRLHFMEEWDIGSQMLQHLYTEIVYTPISTPDGTVVKKFKGNNSGQPSTVVDNTLLV 2597

Query: 1583 ILAMHYASGLYNSDVAITEY---CVFFVNGDDLIIAVHPDHQAFLDGLKESFTHLGLKYD 1413
            +LAMHYA  L  S V + E+   CV+ VNGDDL+IA+ PD +  LDG +  F+ LGL Y+
Sbjct: 2598 VLAMHYA--LLKSGVPLEEHDSVCVYCVNGDDLLIAIRPDMEPKLDGFQALFSELGLNYE 2655

Query: 1412 FSNRCQSREDLWFMSHKAILSGDIYIPKLEEERIVSILEWDRAILPEHRLEAICASMIEA 1233
            F++R + ++DLWFMSHKAI   DI IPKLEEERIVSILEWDR+  P HRLEAICASM+E+
Sbjct: 2656 FNSRSKDKKDLWFMSHKAIQCDDILIPKLEEERIVSILEWDRSHEPVHRLEAICASMVES 2715

Query: 1232 WGYPDLLYQIRRFYYWVLEQAPYNHLSQTGKAPYISEAALKNLYTN-QSSPSELQRYVDS 1056
            WGYP+L ++IRRFY WVLEQ+PYN L+ TG APYI+E+ALK LYTN   + +EL++Y   
Sbjct: 2716 WGYPELTHEIRRFYAWVLEQSPYNALAATGLAPYIAESALKTLYTNVHPTSTELEKYSLQ 2775

Query: 1055 LEWNNLTGEEAVEFQGTEDESLNAGDQTKKTSEAKGKDNK-EKALETRPKDKDVDVGTSG 879
            L       ++ V FQ     +L+AG+ T + +E K K+ +         KDKDVD+GT+G
Sbjct: 2776 LIEQVDEEDDIVYFQA---GTLDAGEATAQKAEGKKKEGEVSSGKAVVVKDKDVDLGTAG 2832

Query: 878  IYQVPKLKAIGTKFCLPKVKGRTIVNLDHLISYEPEQINLSNARATQSQFAQWYNGVKDA 699
             + VP+LK++ +K  LP +KG++  NLDHL+SY+ + ++LSNARAT  QF  WY+GV  +
Sbjct: 2833 THSVPRLKSMTSKLTLPMLKGKSRCNLDHLLSYK-QTVDLSNARATHEQFQNWYDGVMAS 2891

Query: 698  YELDDNSMGIVMSGLMVWCIENGTSPNINGQWTMMDGDEQVEYPLKPVVENAQPSLRQIM 519
            YEL+++SM I+++G MVWCIENGTSP+ING WTMMD +EQ+ YPLKP++++A+PSLRQIM
Sbjct: 2892 YELEESSMEIILNGFMVWCIENGTSPDINGVWTMMDDEEQISYPLKPMLDHAKPSLRQIM 2951

Query: 518  AHFSALAEAYIEKRNATKPYMPRYGLLRNLRDSSLARYAFDFYEVTSRTPPRAREAHLQM 339
             HFSALAEAYIE R+  KPYMPRYGL RNLRD SLARYAFDFYE+T+ TP RA+EAHLQM
Sbjct: 2952 RHFSALAEAYIEMRSREKPYMPRYGLQRNLRDQSLARYAFDFYEITATTPVRAKEAHLQM 3011

Query: 338  KAAAIRNSSTKMFGLDGNAGDKEEDTERHTANDVSKNMHSLMGVR 204
            KAAA++NS+T MFGLDGN    EEDTERHTA DV++NMH L+GV+
Sbjct: 3012 KAAALKNSNTNMFGLDGNVTTSEEDTERHTATDVNRNMHHLLGVK 3056