BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Aconitum21_contig00026993
         (445 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD17398.1| putative non-LTR retroelement reverse transcripta...    62   5e-08
emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulga...    56   3e-06
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam...    55   5e-06
ref|NP_187562.1| RNase H domain-containing protein [Arabidopsis ...    55   6e-06
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta...    55   6e-06

>gb|AAD17398.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1225

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 36/108 (33%), Positives = 56/108 (51%), Gaps = 4/108 (3%)
 Frame = -3

Query: 440  NFS*KSLNNYITTKENLFKIHMSDTPTCPICQDQEESINHCLFQCSHVK-LTLFSSIQLN 264
            +F  + L+  + T + LF  H+     CP C  +EESINH LF C   + +   S I  +
Sbjct: 937  HFEWQCLSGCLATNQRLFSRHIGTEKVCPRCGAEEESINHLLFLCPPSRQIWALSPIPSS 996

Query: 263  TSSLTSSSFKDNWNFLINKFKNKDI---ITSFLCYNIWSIWKTRNKFI 129
                  +S   N++FL+++ K  DI   I     + +W IWK+RN+FI
Sbjct: 997  EYIFPRNSLFYNFDFLLSRGKEFDIAEDIMEIFPWILWYIWKSRNRFI 1044


>emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1362

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 4/108 (3%)
 Frame = -3

Query: 440  NFS*KSLNNYITTKENLFKIHMSDTPTCPICQDQEESINHCLFQCSHVK----LTLFSSI 273
            +F  ++    +  K  LF  H+S   TC +C D +ESINH LF C+  +    ++ F+S+
Sbjct: 1059 HFLWRACKGSLAVKGRLFSRHISVDATCSVCGDPDESINHALFDCTFARAIWQVSGFASL 1118

Query: 272  QLNTSSLTSSSFKDNWNFLINKFKNKDIITSFLCYNIWSIWKTRNKFI 129
             +N      SSF +   +L      ++  T  +C  +W+ W  RNK I
Sbjct: 1119 MMNA---PLSSFSERLEWLAKHATKEEFRT--MCSFMWAGWFCRNKLI 1161


>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
            42.57) [Arabidopsis thaliana]
          Length = 1662

 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 4/104 (3%)
 Frame = -3

Query: 428  KSLNNYITTKENLFKIHMSDTPTCPICQDQEESINHCLFQCSH-VKLTLFSSIQLNTSSL 252
            ++++  + T+  L    M   P CP C  +EE+INH LF C +   +   S+        
Sbjct: 1377 RTISKALPTRSRLLTRGMDIDPHCPRCPTEEETINHVLFTCPYAASIWGLSNFPWLPGHT 1436

Query: 251  TSSSFKDNWNFLINKFKNKDIITSFLC---YNIWSIWKTRNKFI 129
             S   ++N +FLIN F N  + T       + IW +WK RN  +
Sbjct: 1437 FSQDTEENISFLINSFSNNTLNTEQRLAPFWLIWRLWKARNNLV 1480


>ref|NP_187562.1| RNase H domain-containing protein [Arabidopsis thaliana]
           gi|6682231|gb|AAF23283.1|AC016661_8 putative non-LTR
           reverse transcriptase [Arabidopsis thaliana]
           gi|332641254|gb|AEE74775.1| RNase H domain-containing
           protein [Arabidopsis thaliana]
          Length = 484

 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 4/108 (3%)
 Frame = -3

Query: 440 NFS*KSLNNYITTKENLFKIHMSDTPTCPICQDQEESINHCLFQCSHVKLT-LFSSIQLN 264
           +F  ++L+  + T E L    M   P+CP C  + ESINH LF C    +    S   L 
Sbjct: 173 HFLWRALSQALATTERLTTRGMRIDPSCPRCHRENESINHALFTCPFATMAWRLSDSSLI 232

Query: 263 TSSLTSSSFKDNWNFLINKFKN---KDIITSFLCYNIWSIWKTRNKFI 129
            + L S+ F++N + ++N  ++    D       + IW IWK RN  +
Sbjct: 233 RNQLMSNDFEENISNILNFVQDTTMSDFHKLLPVWLIWRIWKARNNVV 280


>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1750

 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 4/108 (3%)
 Frame = -3

Query: 440  NFS*KSLNNYITTKENLFKIHMSDTPTCPICQDQEESINHCLFQCSHVKLT-LFSSIQLN 264
            +F  ++L+  + T E L    M   P+CP C  + ESINH LF C    +    S   L 
Sbjct: 1439 HFLWRALSQALATTERLTTRGMRIDPSCPRCHRENESINHALFTCPFATMAWRLSDSSLI 1498

Query: 263  TSSLTSSSFKDNWNFLINKFKN---KDIITSFLCYNIWSIWKTRNKFI 129
             + L S+ F++N + ++N  ++    D       + IW IWK RN  +
Sbjct: 1499 RNQLMSNDFEENISNILNFVQDTTMSDFHKLLPVWLIWRIWKARNNVV 1546