BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Aconitum21_contig00023162
         (751 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   245   8e-63
ref|XP_002298071.1| RNA polymerase IV subunit [Populus trichocar...   237   2e-60
ref|XP_002509696.1| DNA-directed RNA polymerase, putative [Ricin...   231   2e-58
emb|CAN66198.1| hypothetical protein VITISV_011232 [Vitis vinifera]   229   6e-58
ref|XP_003538711.1| PREDICTED: DNA-directed RNA polymerase D sub...   224   1e-56

>ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
            1-like [Vitis vinifera]
          Length = 1560

 Score =  245 bits (625), Expect = 8e-63
 Identities = 127/249 (51%), Positives = 162/249 (65%), Gaps = 1/249 (0%)
 Frame = +2

Query: 5    HFHLCKEGLKRRGLNVQFIIKTLGQECQSIVENLKIDLATLKIFNGSC-ADAQKEKDGAL 181
            HFH+C+E  K+R L    II  L  +C S     KI+L  L+I +  C  D +KE     
Sbjct: 1027 HFHVCEEIAKKRSLKPHSIIDALYMKCNSARAESKINLPDLQITSKDCFVDMEKEDSDCF 1086

Query: 182  CITLAAEVPLGSPMLMDIFRDSVIPSLLGTVIRGFLEFKKVDILWNDQSVASKSENVSPG 361
            CIT++      S + +D  RD VIP LLG V++G L+ KKVDILWND   +   ++ S G
Sbjct: 1087 CITVSIVNSKKSCIQLDTVRDLVIPFLLGAVVKGLLDVKKVDILWNDNPDSDVLKS-SSG 1145

Query: 362  ELYMKVNFSETCKSGKCWNLLMSKCLHIMDLIDWERSYPDNIPDVYYSFGINCARDIFLR 541
             LY++V  S  C     W +LM  CL IMD+IDWERS+PDNI D++  +GI+     FL 
Sbjct: 1146 RLYLRVYVSGDCGKKNFWGVLMDACLQIMDMIDWERSHPDNIHDIFVVYGIDAGWKYFLN 1205

Query: 542  SLKVAASDIGKAILPKHLLLVADCLSATGEFVGLNAKGIEKQRDLAEVSSPFTQACFSNP 721
            SLK A SDIGK +LP+HLLLVA CLSATGEFVGLNAKG+ +Q++L  +SSPF Q CFS+P
Sbjct: 1206 SLKSAISDIGKTVLPEHLLLVASCLSATGEFVGLNAKGMARQKELTSISSPFMQGCFSSP 1265

Query: 722  ESCFIKAAK 748
             SCFIKA K
Sbjct: 1266 GSCFIKAGK 1274


>ref|XP_002298071.1| RNA polymerase IV subunit [Populus trichocarpa]
            gi|222845329|gb|EEE82876.1| RNA polymerase IV subunit
            [Populus trichocarpa]
          Length = 1517

 Score =  237 bits (605), Expect = 2e-60
 Identities = 122/249 (48%), Positives = 165/249 (66%), Gaps = 1/249 (0%)
 Frame = +2

Query: 5    HFHLCKEGLKRRGLNVQFIIKTLGQECQSIVENLKIDLATLKIFNGSCADAQKEKDGALC 184
            HFH+ KE +K+R L V +II  L ++C+S     K+ + +      + AD  KEK    C
Sbjct: 1042 HFHVYKEIVKKRSLKVHYIIDALEKQCKSKTRFPKVQITSRYC---TVADTWKEKKETFC 1098

Query: 185  ITLA-AEVPLGSPMLMDIFRDSVIPSLLGTVIRGFLEFKKVDILWNDQSVASKSENVSPG 361
            IT+   E      + ++  +D +IP LL TVI+GF+E +KVDILWND+    KS N   G
Sbjct: 1099 ITVTIVETSKNEFIELETIQDLMIPFLLETVIKGFMEIQKVDILWNDKPKIPKSHNRLRG 1158

Query: 362  ELYMKVNFSETCKSGKCWNLLMSKCLHIMDLIDWERSYPDNIPDVYYSFGINCARDIFLR 541
            EL+++V+ S      + WN LM  CL IMDLIDW RS+PDNI +   ++GI+     FL 
Sbjct: 1159 ELFLRVHMSRGSDKTRLWNQLMDDCLSIMDLIDWARSHPDNIHECCLAYGIDAGWKFFLN 1218

Query: 542  SLKVAASDIGKAILPKHLLLVADCLSATGEFVGLNAKGIEKQRDLAEVSSPFTQACFSNP 721
            +L+ A SD+GK +LP+HLLLVA+CLS TGEFVGLNAKG+++QR+ A VS+PF QACFSNP
Sbjct: 1219 NLQSAMSDVGKTVLPEHLLLVANCLSVTGEFVGLNAKGLKRQREHASVSTPFVQACFSNP 1278

Query: 722  ESCFIKAAK 748
              CFI+AAK
Sbjct: 1279 GDCFIRAAK 1287


>ref|XP_002509696.1| DNA-directed RNA polymerase, putative [Ricinus communis]
            gi|223549595|gb|EEF51083.1| DNA-directed RNA polymerase,
            putative [Ricinus communis]
          Length = 1475

 Score =  231 bits (588), Expect = 2e-58
 Identities = 122/249 (48%), Positives = 162/249 (65%), Gaps = 1/249 (0%)
 Frame = +2

Query: 5    HFHLCKEGLKRRGLNVQFIIKTLGQECQSIVENLKIDLATLKIFNGSCADAQKEKDGALC 184
            HFH+ KE +K+R LNV  II  L   C+S   N  +    +   + S AD  +EK+  LC
Sbjct: 996  HFHVYKEIMKKRNLNVDSIINILNGRCKS---NTNLPNVQISCKSCSIADNHREKEETLC 1052

Query: 185  ITLA-AEVPLGSPMLMDIFRDSVIPSLLGTVIRGFLEFKKVDILWNDQSVASKSENVSPG 361
            IT+   E    S   +   +D +IP LL TV++G +E  KVDILW D    SK+ N   G
Sbjct: 1053 ITVTIVERSKNSSTRLATIQDLMIPFLLETVLKGLMEINKVDILWKDWPRISKTHNQPYG 1112

Query: 362  ELYMKVNFSETCKSGKCWNLLMSKCLHIMDLIDWERSYPDNIPDVYYSFGINCARDIFLR 541
            ELY++V+ S   +  + WNLLM  CL IMD+IDW  S PDN+ D   ++GI+     FL+
Sbjct: 1113 ELYLRVSMSADSEKTRLWNLLMDYCLPIMDMIDWTCSRPDNVRDFSLAYGIDAGWKFFLQ 1172

Query: 542  SLKVAASDIGKAILPKHLLLVADCLSATGEFVGLNAKGIEKQRDLAEVSSPFTQACFSNP 721
             L+ A SD+GK++LP+H+LLVA+CLS TGEFVGLNAKG ++QR+ A VSSPF QACFS+P
Sbjct: 1173 RLESAISDVGKSVLPEHMLLVANCLSVTGEFVGLNAKGWKRQREDASVSSPFVQACFSSP 1232

Query: 722  ESCFIKAAK 748
             +CFIKAAK
Sbjct: 1233 GNCFIKAAK 1241


>emb|CAN66198.1| hypothetical protein VITISV_011232 [Vitis vinifera]
          Length = 1393

 Score =  229 bits (583), Expect = 6e-58
 Identities = 122/250 (48%), Positives = 158/250 (63%), Gaps = 1/250 (0%)
 Frame = +2

Query: 5    HFHLCKEGLKRRGLNVQFIIKTLGQECQSIVENLKIDLATLKIFNGSC-ADAQKEKDGAL 181
            HFH+C+E  K+R L    II  L  +C S     KI+L  L+I +  C  D +KE     
Sbjct: 1142 HFHVCEEIAKKRSLKPHSIIDALYMKCNSARAESKINLPDLQITSKDCFVDMEKEDSDCF 1201

Query: 182  CITLAAEVPLGSPMLMDIFRDSVIPSLLGTVIRGFLEFKKVDILWNDQSVASKSENVSPG 361
            CIT++      S + +D  RD VIP LLG V++G L+ KKVDILWND   +   ++ S G
Sbjct: 1202 CITVSIVNSKKSCIQLDTVRDLVIPFLLGAVVKGLLDVKKVDILWNDNPDSDVLKS-SSG 1260

Query: 362  ELYMKVNFSETCKSGKCWNLLMSKCLHIMDLIDWERSYPDNIPDVYYSFGINCARDIFLR 541
             LY++V  S  C     W +LM  CL IMD+IDWERS+PDNI D++  +GI+     FL 
Sbjct: 1261 RLYLRVYVSGDCGKKNFWGVLMDACLQIMDMIDWERSHPDNIHDIFVVYGIDAGWKYFLN 1320

Query: 542  SLKVAASDIGKAILPKHLLLVADCLSATGEFVGLNAKGIEKQRDLAEVSSPFTQACFSNP 721
            SLK A SDIGK +LP+HLLLVA CLSATGEFVGLNAKG+ +Q++L  +SSPF Q CFS  
Sbjct: 1321 SLKSAISDIGKTVLPEHLLLVASCLSATGEFVGLNAKGMARQKELTSISSPFMQGCFS-- 1378

Query: 722  ESCFIKAAKE 751
            E  +I  + E
Sbjct: 1379 EEVYIDQSPE 1388


>ref|XP_003538711.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Glycine max]
          Length = 1461

 Score =  224 bits (572), Expect = 1e-56
 Identities = 127/258 (49%), Positives = 160/258 (62%), Gaps = 10/258 (3%)
 Frame = +2

Query: 5    HFHLCKEGLKRRGLNVQFIIKTLGQECQSIVENLKIDLATLKIFNGSC-ADAQKE----- 166
            HFHL KE + RR L V  II +L Q   S  ++ K+    LKI +  C AD+  +     
Sbjct: 998  HFHLDKEIVTRRKLKVHSIIDSLYQRYYSQRKDSKVCFTNLKISSKKCSADSMAKEGEDT 1057

Query: 167  ----KDGALCITLAAEVPLGSPMLMDIFRDSVIPSLLGTVIRGFLEFKKVDILWNDQSVA 334
                K+G  CIT+       +P+ +D  RD VIP LLGT I+GFL+ KKVD+LWN+QS  
Sbjct: 1058 SIDKKEGDDCITVTIVENSKNPIQLDSVRDLVIPFLLGTAIKGFLDVKKVDVLWNNQSKV 1117

Query: 335  SKSENVSPGELYMKVNFSETCKSGKCWNLLMSKCLHIMDLIDWERSYPDNIPDVYYSFGI 514
              S N   GELY++V  S     G+ W +L++ C  IM +IDW RS+PDNI     ++GI
Sbjct: 1118 KNSCNGFSGELYLRVTLSSEGSRGRFWGVLLNLCHKIMHIIDWTRSHPDNINHFSSAYGI 1177

Query: 515  NCARDIFLRSLKVAASDIGKAILPKHLLLVADCLSATGEFVGLNAKGIEKQRDLAEVSSP 694
            +     F  SL  A SD GK+ILPKHL LVA+ LS +GEFVGLNAKG+  QR  A VSSP
Sbjct: 1178 DAGWQYFFNSLASATSDTGKSILPKHLCLVANSLSCSGEFVGLNAKGMALQRKHASVSSP 1237

Query: 695  FTQACFSNPESCFIKAAK 748
            F QACF+NP SCFIKAAK
Sbjct: 1238 FVQACFANPGSCFIKAAK 1255