BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Aconitum21_contig00023035
         (826 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI40152.3| unnamed protein product [Vitis vinifera]              327   2e-87
ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub...   327   2e-87
gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinac...   322   5e-86
ref|XP_002879839.1| NRPD1b [Arabidopsis lyrata subsp. lyrata] gi...   303   3e-80
ref|NP_181532.2| nuclear RNA polymerase D1B [Arabidopsis thalian...   295   6e-78

>emb|CBI40152.3| unnamed protein product [Vitis vinifera]
          Length = 1890

 Score =  327 bits (839), Expect = 2e-87
 Identities = 166/272 (61%), Positives = 202/272 (74%)
 Frame = -3

Query: 824  EPGTLFKNLMTILRDVVICYDGTVRNVCSNSIIQFQYAVEAGMNPHRFYPSGEPVGALAA 645
            EPGTLFKNLM ILRDVVICYDGTVRNVCSNSIIQF+Y V+A   P  F+P+GEPVG LAA
Sbjct: 838  EPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYGVKARTKPQHFFPAGEPVGVLAA 897

Query: 644  TAISNPAYKAVLDXXXXSNASWDLMKEILVCKINFMNDTNDRRVILYLNDCCCVKKHCKE 465
            TA+SNPAYKAVLD    SN+SW+LMKEIL+C++NF ND  DRRVILYLNDC C +K+C+E
Sbjct: 898  TAMSNPAYKAVLDSSPSSNSSWELMKEILLCQVNFKNDLIDRRVILYLNDCDCGRKYCRE 957

Query: 464  NAAFLVQNQLKKVSLKDISVDFLIEYQNSQTSQESSGINTRLVGHIHLDKKRLKDLDRSM 285
            NAA+LV+NQLKK SLKD +V+F+IEY        SS   T LVGHIHL+K  L+DL+ SM
Sbjct: 958  NAAYLVKNQLKKASLKDTAVEFMIEYVKQHAVSGSSEPGTGLVGHIHLNKLLLQDLNVSM 1017

Query: 284  HEVLLKCQETISFFRRKKKNKLVDYLKNVFLSVSECCYFEQSYDSEWCQIPCLQFSWRLD 105
             EV  KC+ETI+ FR+KK   +  + K + LS  ECC F+ S  S+   +PCL F W+  
Sbjct: 1018 QEVCQKCEETINSFRKKK--NVGPFFKKIILSFRECCTFQHSCQSKGSDMPCLLFFWQ-G 1074

Query: 104  PGGPSIETISQIMTNMICPILLDTIIKGDRRV 9
                ++E I  I+ + ICP+LL TIIKGD RV
Sbjct: 1075 NRDDNLEQILHILAHKICPVLLQTIIKGDSRV 1106


>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
          Length = 1830

 Score =  327 bits (839), Expect = 2e-87
 Identities = 166/272 (61%), Positives = 202/272 (74%)
 Frame = -3

Query: 824  EPGTLFKNLMTILRDVVICYDGTVRNVCSNSIIQFQYAVEAGMNPHRFYPSGEPVGALAA 645
            EPGTLFKNLM ILRDVVICYDGTVRNVCSNSIIQF+Y V+A   P  F+P+GEPVG LAA
Sbjct: 778  EPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYGVKARTKPQHFFPAGEPVGVLAA 837

Query: 644  TAISNPAYKAVLDXXXXSNASWDLMKEILVCKINFMNDTNDRRVILYLNDCCCVKKHCKE 465
            TA+SNPAYKAVLD    SN+SW+LMKEIL+C++NF ND  DRRVILYLNDC C +K+C+E
Sbjct: 838  TAMSNPAYKAVLDSSPSSNSSWELMKEILLCQVNFKNDLIDRRVILYLNDCDCGRKYCRE 897

Query: 464  NAAFLVQNQLKKVSLKDISVDFLIEYQNSQTSQESSGINTRLVGHIHLDKKRLKDLDRSM 285
            NAA+LV+NQLKK SLKD +V+F+IEY        SS   T LVGHIHL+K  L+DL+ SM
Sbjct: 898  NAAYLVKNQLKKASLKDTAVEFMIEYVKQHAVSGSSEPGTGLVGHIHLNKLLLQDLNVSM 957

Query: 284  HEVLLKCQETISFFRRKKKNKLVDYLKNVFLSVSECCYFEQSYDSEWCQIPCLQFSWRLD 105
             EV  KC+ETI+ FR+KK   +  + K + LS  ECC F+ S  S+   +PCL F W+  
Sbjct: 958  QEVCQKCEETINSFRKKK--NVGPFFKKIILSFRECCTFQHSCQSKGSDMPCLLFFWQ-G 1014

Query: 104  PGGPSIETISQIMTNMICPILLDTIIKGDRRV 9
                ++E I  I+ + ICP+LL TIIKGD RV
Sbjct: 1015 NRDDNLEQILHILAHKICPVLLQTIIKGDSRV 1046


>gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinacia oleracea]
          Length = 1902

 Score =  322 bits (826), Expect = 5e-86
 Identities = 158/272 (58%), Positives = 200/272 (73%)
 Frame = -3

Query: 824  EPGTLFKNLMTILRDVVICYDGTVRNVCSNSIIQFQYAVEAGMNPHRFYPSGEPVGALAA 645
            EPGTLFKNLM +LRDVVICYDGTVRN+ SNS+IQF+Y V  GM     +P+G+PVG LAA
Sbjct: 578  EPGTLFKNLMAVLRDVVICYDGTVRNISSNSVIQFEYGV-GGMQSQNLFPAGDPVGVLAA 636

Query: 644  TAISNPAYKAVLDXXXXSNASWDLMKEILVCKINFMNDTNDRRVILYLNDCCCVKKHCKE 465
            TA+SNPAYKAVLD    SN+SWD+MKEIL C+ NF ND NDRRVILYLNDCCC +K+C+E
Sbjct: 637  TAMSNPAYKAVLDSSPNSNSSWDMMKEILFCRANFRNDINDRRVILYLNDCCCGRKYCQE 696

Query: 464  NAAFLVQNQLKKVSLKDISVDFLIEYQNSQTSQESSGINTRLVGHIHLDKKRLKDLDRSM 285
            NA+ LV+N LKKVSL+D +++  IEY+  +   ES  I+  LVGHIHL+   LK     M
Sbjct: 697  NASCLVKNHLKKVSLRDAAIELAIEYKRPKLEPESCEIDAGLVGHIHLNSGLLKASGIGM 756

Query: 284  HEVLLKCQETISFFRRKKKNKLVDYLKNVFLSVSECCYFEQSYDSEWCQIPCLQFSWRLD 105
            H++L KC+E ++  R+KKK     + K + LSVS+CC+F  S DS+W  +PCL+F W+ D
Sbjct: 757  HDILQKCEEQVNLLRKKKKYGY--HFKRILLSVSDCCFFNHS-DSKWTDMPCLKFFWQ-D 812

Query: 104  PGGPSIETISQIMTNMICPILLDTIIKGDRRV 9
                 +E    IM +MICP+LLDTIIKGD R+
Sbjct: 813  MTDTDLERTKHIMADMICPVLLDTIIKGDPRI 844


>ref|XP_002879839.1| NRPD1b [Arabidopsis lyrata subsp. lyrata] gi|297325678|gb|EFH56098.1|
            NRPD1b [Arabidopsis lyrata subsp. lyrata]
          Length = 1947

 Score =  303 bits (776), Expect = 3e-80
 Identities = 149/272 (54%), Positives = 194/272 (71%)
 Frame = -3

Query: 824  EPGTLFKNLMTILRDVVICYDGTVRNVCSNSIIQFQYAVEAGMNPHRFYPSGEPVGALAA 645
            EPGTLFKNLM +LRD+VI  DGTVRN CSNS++QF Y V++       + +GEPVG LAA
Sbjct: 774  EPGTLFKNLMAVLRDIVITNDGTVRNTCSNSVVQFTYGVDSERGHQGLFEAGEPVGVLAA 833

Query: 644  TAISNPAYKAVLDXXXXSNASWDLMKEILVCKINFMNDTNDRRVILYLNDCCCVKKHCKE 465
            TA+SNPAYKAVLD    SN+SW+ MKE+L+CK+NF N TNDRRVILYLN+C C K+ C+E
Sbjct: 834  TAMSNPAYKAVLDSTANSNSSWEQMKEVLLCKVNFQNTTNDRRVILYLNECHCGKRFCQE 893

Query: 464  NAAFLVQNQLKKVSLKDISVDFLIEYQNSQTSQESSGINTRLVGHIHLDKKRLKDLDRSM 285
            NAA+ V+N+LKKVSLKD +V+FL+EY+  QT  E  GI++ L GHIHLDK  L+D + SM
Sbjct: 894  NAAYTVRNKLKKVSLKDTAVEFLVEYRKQQTISEIFGIDSCLHGHIHLDKTLLQDWNISM 953

Query: 284  HEVLLKCQETISFFRRKKKNKLVDYLKNVFLSVSECCYFEQSYDSEWCQIPCLQFSWRLD 105
             ++L KC++ I+   +KKK K  D  K   LSVSECC F+     +   +PCL FS+   
Sbjct: 954  QDILQKCEDVINSLGQKKKKKATDDFKRTSLSVSECCSFQDPCGRKDSDMPCLMFSY--S 1011

Query: 104  PGGPSIETISQIMTNMICPILLDTIIKGDRRV 9
               P +E    ++ N I P+LL+T+IKGD R+
Sbjct: 1012 ATDPDLERTLDVLCNTIYPVLLETVIKGDPRI 1043


>ref|NP_181532.2| nuclear RNA polymerase D1B [Arabidopsis thaliana]
            gi|75320513|sp|Q5D869.1|NRPE1_ARATH RecName:
            Full=DNA-directed RNA polymerase E subunit 1;
            Short=Nuclear RNA polymerase E 1; AltName:
            Full=DNA-directed RNA polymerase D subunit 1b;
            Short=AtNRPD1b; Short=Nuclear RNA polymerase D 1b;
            AltName: Full=Protein DEFECTIVE IN MERISTEM SILENCING 5;
            AltName: Full=Protein DEFECTIVE IN RNA-DIRECTED DNA
            METHYLATION 3; AltName: Full=Protein RNA-DIRECTED DNA
            METHYLATION DEFECTIVE 1; AltName: Full=RNA polymerase IV
            subunit 1; Short=POL IV 1 gi|59939210|gb|AAX12373.1|
            DNA-directed RNA polymerase alpha subunit [Arabidopsis
            thaliana] gi|62822917|gb|AAY15198.1| DNA-dependent RNA
            polymerase large subunit [Arabidopsis thaliana]
            gi|330254673|gb|AEC09767.1| nuclear RNA polymerase D1B
            [Arabidopsis thaliana]
          Length = 1976

 Score =  295 bits (756), Expect = 6e-78
 Identities = 146/272 (53%), Positives = 192/272 (70%)
 Frame = -3

Query: 824  EPGTLFKNLMTILRDVVICYDGTVRNVCSNSIIQFQYAVEAGMNPHRFYPSGEPVGALAA 645
            EPGTLFKNLM +LRD+VI  DGTVRN CSNS+IQF+Y V++       + +GEPVG LAA
Sbjct: 774  EPGTLFKNLMAVLRDIVITNDGTVRNTCSNSVIQFKYGVDSERGHQGLFEAGEPVGVLAA 833

Query: 644  TAISNPAYKAVLDXXXXSNASWDLMKEILVCKINFMNDTNDRRVILYLNDCCCVKKHCKE 465
            TA+SNPAYKAVLD    SN+SW+LMKE+L+CK+NF N TNDRRVILYLN+C C K+ C+E
Sbjct: 834  TAMSNPAYKAVLDSSPNSNSSWELMKEVLLCKVNFQNTTNDRRVILYLNECHCGKRFCQE 893

Query: 464  NAAFLVQNQLKKVSLKDISVDFLIEYQNSQTSQESSGINTRLVGHIHLDKKRLKDLDRSM 285
            NAA  V+N+L KVSLKD +V+FL+EY+   T  E  GI++ L GHIHL+K  L+D + SM
Sbjct: 894  NAACTVRNKLNKVSLKDTAVEFLVEYRKQPTISEIFGIDSCLHGHIHLNKTLLQDWNISM 953

Query: 284  HEVLLKCQETISFFRRKKKNKLVDYLKNVFLSVSECCYFEQSYDSEWCQIPCLQFSWRLD 105
             ++  KC++ I+   +KKK K  D  K   LSVSECC F     S+   +PCL FS+  +
Sbjct: 954  QDIHQKCEDVINSLGQKKKKKATDDFKRTSLSVSECCSFRDPCGSKGSDMPCLTFSY--N 1011

Query: 104  PGGPSIETISQIMTNMICPILLDTIIKGDRRV 9
               P +E    ++ N + P+LL+ +IKGD R+
Sbjct: 1012 ATDPDLERTLDVLCNTVYPVLLEIVIKGDSRI 1043