BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Aconitum21_contig00021918
         (1197 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002320427.1| predicted protein [Populus trichocarpa] gi|2...   671   0.0  
emb|CBI21248.3| unnamed protein product [Vitis vinifera]              652   0.0  
ref|YP_007092339.1| transcription-repair coupling factor [Chrooc...   376   e-102
ref|ZP_21056386.1| transcription-repair coupling factor Mfd [Xen...   375   e-102
ref|ZP_01084984.1| transcription-repair coupling factor [Synecho...   372   e-101

>ref|XP_002320427.1| predicted protein [Populus trichocarpa] gi|222861200|gb|EEE98742.1|
            predicted protein [Populus trichocarpa]
          Length = 817

 Score =  671 bits (1731), Expect = 0.0
 Identities = 343/442 (77%), Positives = 375/442 (84%), Gaps = 45/442 (10%)
 Frame = +2

Query: 5    STQPVEYVFIEYADGMAKLPIKQAARMLYRYNLPNETKRPRTLNKLSDTSVWERRRIKGK 184
            S++ +EYVFIEYADGMAKLP+ QA+RMLYRYNLPNETKRPRTL+KLSDT  WERR+ KGK
Sbjct: 163  SSEAIEYVFIEYADGMAKLPVMQASRMLYRYNLPNETKRPRTLSKLSDTGAWERRKTKGK 222

Query: 185  IAIQKMVVDLMELYLHRQKQKRPPYPKTPAMAEFVAQFRYQPTPDQKQAFIDVEKDLTER 364
            +AIQKMVVDLMELYLHR KQ+RPPYPKTP MAEF AQF Y+PTPDQK AFIDVE+DL +R
Sbjct: 223  VAIQKMVVDLMELYLHRLKQRRPPYPKTPFMAEFAAQFPYEPTPDQKLAFIDVERDLNQR 282

Query: 365  ETPMDRLICGDVGFGKTEVALRAIFSVVSAGKQAMVLAPTIVLAKQHFEVVSERFSQYPH 544
            ETPMDRLICGDVGFGKTEVALRAIF +VSAGKQAMVLAPTIVLAKQHF+V+SERFS+Y H
Sbjct: 283  ETPMDRLICGDVGFGKTEVALRAIFCIVSAGKQAMVLAPTIVLAKQHFDVISERFSKYSH 342

Query: 545  IKVGLLSRFQ---------------------------------------------RFGVK 589
            IKV LLSRFQ                                             RFGVK
Sbjct: 343  IKVALLSRFQSKAEKEMYLNMIEHGHLDIIVGTHSLLGNRVVYNNLGLLVVDEEQRFGVK 402

Query: 590  QKEKIASFKTSVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERVPIKTHLSAYSEEK 769
            QKEKIASFKTSVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERVPIKTHLSAY+++K
Sbjct: 403  QKEKIASFKTSVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERVPIKTHLSAYNKDK 462

Query: 770  ALSAITFELDRGGKVFYVLPRIKGLEEVKDFLQRSFPNVETAIAHGKQYSKQLEETMENF 949
             +SAI +ELDRGG+VFYVLPRIKGLEEVKDFL++SFPNVE A+AHG+QYSKQLE+TME F
Sbjct: 463  LISAIKYELDRGGQVFYVLPRIKGLEEVKDFLEQSFPNVEIAVAHGQQYSKQLEDTMEQF 522

Query: 950  AQGETKILICTNIVESGLDIQDANTIIIQDVHQFGLAQLYQLRGRVGRSDKEAHACLFYP 1129
            AQGE KILICTNIVESGLDIQ+ANTIIIQDV  FGLAQLYQLRGRVGR+DKEAHA LFYP
Sbjct: 523  AQGEIKILICTNIVESGLDIQNANTIIIQDVQLFGLAQLYQLRGRVGRADKEAHAHLFYP 582

Query: 1130 DKSLLSDQALERLAALEECRDL 1195
            DKS+L+DQALERLAALEECR+L
Sbjct: 583  DKSMLTDQALERLAALEECREL 604


>emb|CBI21248.3| unnamed protein product [Vitis vinifera]
          Length = 640

 Score =  652 bits (1682), Expect = 0.0
 Identities = 337/427 (78%), Positives = 366/427 (85%), Gaps = 45/427 (10%)
 Frame = +2

Query: 50   MAKLPIKQAARMLYRYNLPNETKRPRTLNKLSDTSVWERRRIKGKIAIQKMVVDLMELYL 229
            MAKLP+KQA+RMLYRYNLP+E+KRPRTL+KLSDTS+WERRRIKG++AIQKMVVDLMELYL
Sbjct: 1    MAKLPVKQASRMLYRYNLPSESKRPRTLSKLSDTSIWERRRIKGRVAIQKMVVDLMELYL 60

Query: 230  HRQKQKRPPYPKTPAMAEFVAQFRYQPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFG 409
            HR KQKRPPYPK+P MAEF AQF Y+PTPDQKQAFIDVE+DLTERETPMDRLICGDVGFG
Sbjct: 61   HRLKQKRPPYPKSPGMAEFEAQFSYEPTPDQKQAFIDVEEDLTERETPMDRLICGDVGFG 120

Query: 410  KTEVALRAIFSVVSAGKQAMVLAPTIVLAKQHFEVVSERFSQYPHIKVGLLSRFQ----- 574
            KTEVALRAIF VVSAGKQAMVLAPTIVLAKQHF+V++ERFS+YP+IKVGLLSRFQ     
Sbjct: 121  KTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVITERFSKYPNIKVGLLSRFQTTAEK 180

Query: 575  ----------------------------------------RFGVKQKEKIASFKTSVDVL 634
                                                    RFGVKQKEKIASFKTSVDVL
Sbjct: 181  EKHLRMIKHGDLDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIASFKTSVDVL 240

Query: 635  TLSATPIPRTLYLALTGFRDASLISTPPPERVPIKTHLSAYSEEKALSAITFELDRGGKV 814
            TLSATPIPRTLYLALTGFRDASLISTPPPERVPI THLSAY++EK +SAI FEL RGG++
Sbjct: 241  TLSATPIPRTLYLALTGFRDASLISTPPPERVPIITHLSAYNKEKIISAIKFELGRGGQI 300

Query: 815  FYVLPRIKGLEEVKDFLQRSFPNVETAIAHGKQYSKQLEETMENFAQGETKILICTNIVE 994
            FYVLPRIKGLEEV +FL+ SFP+VE AIAHGKQYSKQLEETM+ FAQGE KILICTNIVE
Sbjct: 301  FYVLPRIKGLEEVMEFLECSFPDVEIAIAHGKQYSKQLEETMDRFAQGEIKILICTNIVE 360

Query: 995  SGLDIQDANTIIIQDVHQFGLAQLYQLRGRVGRSDKEAHACLFYPDKSLLSDQALERLAA 1174
            SGLDIQ+ANTIIIQ+V QFGLAQLYQLRGRVGR+DKEAHA LFYPDKSLLSDQALERL+A
Sbjct: 361  SGLDIQNANTIIIQEVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLSA 420

Query: 1175 LEECRDL 1195
            LEECRDL
Sbjct: 421  LEECRDL 427


>ref|YP_007092339.1| transcription-repair coupling factor [Chroococcidiopsis thermalis PCC
            7203] gi|428009907|gb|AFY88470.1| transcription-repair
            coupling factor [Chroococcidiopsis thermalis PCC 7203]
          Length = 1223

 Score =  376 bits (965), Expect = e-102
 Identities = 207/438 (47%), Positives = 273/438 (62%), Gaps = 46/438 (10%)
 Frame = +2

Query: 20   EYVFIEYADGMAKLPIKQAARMLYRYNLPNETKRPRTLNKLSDTSVWERRRIKGKIAIQK 199
            EY+ ++YADG+ ++   Q    L R+   +   +P  LNK+S +  W   + + + AI+K
Sbjct: 583  EYLVVQYADGLLRVAADQLGS-LSRFRATDS--KPPELNKMS-SKAWANTKNRARKAIKK 638

Query: 200  MVVDLMELYLHRQKQKRPPYP-KTPAMAEFVAQFRYQPTPDQKQAFIDVEKDLTERETPM 376
            + VDL++LY  R +Q    YP  +P   E    F YQPT DQ +A  DV++D+ E + PM
Sbjct: 639  LAVDLLQLYAQRSQQSGYAYPIDSPWQVELEDSFPYQPTTDQLKATQDVKRDM-ESDRPM 697

Query: 377  DRLICGDVGFGKTEVALRAIFSVVSAGKQAMVLAPTIVLAKQHFEVVSERFSQYPHIKVG 556
            DRL+CGDVGFGKTEVA+RA+F  V+AGKQ   LAPT +L +QH+  + ERF+ YP + VG
Sbjct: 698  DRLVCGDVGFGKTEVAIRAVFKAVTAGKQVAFLAPTTILTQQHYHTLKERFAPYP-VNVG 756

Query: 557  LLSRF---------------------------------------------QRFGVKQKEK 601
            LL+RF                                             QRFGV QKEK
Sbjct: 757  LLNRFRSAEERKDLLKRLATGELDIVVGTHQLLGKGVSFRDLGLLIIDEEQRFGVNQKEK 816

Query: 602  IASFKTSVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERVPIKTHLSAYSEEKALSA 781
            I + KT +DVLTLSATPIPRTLY++L+G R+ SLI+TPPP R PIKTHL+ Y  E   SA
Sbjct: 817  IKALKTQLDVLTLSATPIPRTLYMSLSGIREMSLITTPPPSRRPIKTHLAPYDTESIRSA 876

Query: 782  ITFELDRGGKVFYVLPRIKGLEEVKDFLQRSFPNVETAIAHGKQYSKQLEETMENFAQGE 961
            I  ELDRGG+VFYV+PR++G+EE    L+        A+ HG+    QLE TM +F+ GE
Sbjct: 877  IRQELDRGGQVFYVVPRVEGIEETAATLREIVGGARIAVGHGQLDENQLESTMLSFSNGE 936

Query: 962  TKILICTNIVESGLDIQDANTIIIQDVHQFGLAQLYQLRGRVGRSDKEAHACLFYPDKSL 1141
              IL+CT I+ESGLDI   NTI+I+D H+FGL+QLYQLRGRVGR+  +AHA LFYP +  
Sbjct: 937  ADILVCTTIIESGLDIPRVNTILIEDAHRFGLSQLYQLRGRVGRAGIQAHAWLFYPKQRA 996

Query: 1142 LSDQALERLAALEECRDL 1195
            LSD A +RL A++E   L
Sbjct: 997  LSDTARQRLRAIQEFTQL 1014


>ref|ZP_21056386.1| transcription-repair coupling factor Mfd [Xenococcus sp. PCC 7305]
            gi|442792612|gb|ELS02090.1| transcription-repair coupling
            factor Mfd [Xenococcus sp. PCC 7305]
          Length = 1163

 Score =  375 bits (964), Expect = e-102
 Identities = 214/439 (48%), Positives = 279/439 (63%), Gaps = 47/439 (10%)
 Frame = +2

Query: 20   EYVFIEYADGMAKLPIKQAARMLYRYNLPNETKRPRTLNKLSDTSVWERRRIKGKIAIQK 199
            EY+ I+YADG+ ++P   +   + RY    ++K    LNK+SD S W + + K +  I+K
Sbjct: 529  EYLAIKYADGLLRVPA-DSLDTISRYRRTGKSKP--VLNKMSDKS-WSKTKTKVRKNIKK 584

Query: 200  MVVDLMELYLHRQKQKRPPYPK-TPAMAEFVAQFRYQPTPDQKQAFIDVEKDLTERETPM 376
            + VDL++LY  R K+    YP+  P   E    F YQPT DQ +A  DV+ DL E + PM
Sbjct: 585  LAVDLVKLYAKRSKRSGFAYPQDNPWQKELEDSFPYQPTTDQLKAVQDVKLDL-ESDRPM 643

Query: 377  DRLICGDVGFGKTEVALRAIFSVV-SAGKQAMVLAPTIVLAKQHFEVVSERFSQYPHIKV 553
            DRL+CGDVGFGKTEVA+R+IF V+ SA KQ  +LAPT +L +QH+  + ERF+ YP I V
Sbjct: 644  DRLVCGDVGFGKTEVAVRSIFKVITSANKQVALLAPTTILTQQHYHTIKERFAPYP-INV 702

Query: 554  GLLSRF---------------------------------------------QRFGVKQKE 598
            GLL+RF                                             QRFGV QKE
Sbjct: 703  GLLNRFRTNAEKKEIMQRLATGELDIVVGTHQLLGKDVKFKDLGMLVIDEEQRFGVNQKE 762

Query: 599  KIASFKTSVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERVPIKTHLSAYSEEKALS 778
            KI ++K+ VDVLTLSATPIPRTLY++L+G R+ SLI+TPPP R PIKTHLS Y+ E   S
Sbjct: 763  KIKAYKSQVDVLTLSATPIPRTLYMSLSGIREMSLITTPPPSRRPIKTHLSPYNPEVVRS 822

Query: 779  AITFELDRGGKVFYVLPRIKGLEEVKDFLQRSFPNVETAIAHGKQYSKQLEETMENFAQG 958
            AI  ELDRGG++FYV+PR++G+EE+   L+   P+   AIAHG+    +LE TM  F+ G
Sbjct: 823  AIRNELDRGGQIFYVVPRVEGIEELGGQLREMIPSARIAIAHGQMPESELEATMLTFSNG 882

Query: 959  ETKILICTNIVESGLDIQDANTIIIQDVHQFGLAQLYQLRGRVGRSDKEAHACLFYPDKS 1138
            E  ILICT I+ESGLDI   NTIII+D  +FGL+QLYQLRGRVGRS  +AHA L YP++ 
Sbjct: 883  EADILICTTIIESGLDIPRVNTIIIEDAQRFGLSQLYQLRGRVGRSGIQAHAWLLYPNQQ 942

Query: 1139 LLSDQALERLAALEECRDL 1195
             L++ A +RL AL+E   L
Sbjct: 943  SLTETARKRLRALQEFSQL 961


>ref|ZP_01084984.1| transcription-repair coupling factor [Synechococcus sp. WH 5701]
            gi|87283084|gb|EAQ75040.1| transcription-repair coupling
            factor [Synechococcus sp. WH 5701]
          Length = 1187

 Score =  372 bits (956), Expect = e-101
 Identities = 204/438 (46%), Positives = 278/438 (63%), Gaps = 46/438 (10%)
 Frame = +2

Query: 20   EYVFIEYADGMAKLPIKQAARMLYRYNLPNETKRPRTLNKLSDTSVWERRRIKGKIAIQK 199
            +Y+ ++YADG+ ++   Q    L R+     T  P  LN+++  + W R + + + A++K
Sbjct: 524  DYLVVQYADGLLRVAADQLGS-LGRFRA--STDSPPELNRMAGVA-WTRAKERARKAVRK 579

Query: 200  MVVDLMELYLHRQKQKRPPYPKT-PAMAEFVAQFRYQPTPDQKQAFIDVEKDLTERETPM 376
            + +DL++LY  RQ+    P+P   P   E    F Y+PTPDQ +A  +V++D+ E+  PM
Sbjct: 580  VAMDLVKLYAERQQAAGFPFPADGPWQGELEDSFPYEPTPDQVKAIAEVKRDM-EKPEPM 638

Query: 377  DRLICGDVGFGKTEVALRAIFSVVSAGKQAMVLAPTIVLAKQHFEVVSERFSQYPHIKVG 556
            DRL+CGDVGFGKTEVA+RA+F  V+AGKQ  +LAPT VLA+QH+  +SERF+ YP +KV 
Sbjct: 639  DRLVCGDVGFGKTEVAIRAVFKAVTAGKQCALLAPTTVLAQQHWRTLSERFAPYP-LKVA 697

Query: 557  LLSRF---------------------------------------------QRFGVKQKEK 601
            LL+RF                                             QRFGV QKEK
Sbjct: 698  LLNRFRTTAERKTILDGLRDGTVDVVVGTHQLLSKGTSFEKLGLLVVDEEQRFGVNQKEK 757

Query: 602  IASFKTSVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERVPIKTHLSAYSEEKALSA 781
            I + +  VDVLTLSATPIPRTLY++L+G R+ SLI+TPPP R PIKTHL+A  EE   SA
Sbjct: 758  IKALRKDVDVLTLSATPIPRTLYMSLSGVREMSLITTPPPLRRPIKTHLAALDEEAVRSA 817

Query: 782  ITFELDRGGKVFYVLPRIKGLEEVKDFLQRSFPNVETAIAHGKQYSKQLEETMENFAQGE 961
            I  ELDRGG+VFYV+PR++G+EEV   L+   P ++  +AHG+    +LE  M  F  GE
Sbjct: 818  IRQELDRGGQVFYVVPRVEGIEEVAGQLREMLPGLKLLVAHGQMGEGELESAMVAFNAGE 877

Query: 962  TKILICTNIVESGLDIQDANTIIIQDVHQFGLAQLYQLRGRVGRSDKEAHACLFYPDKSL 1141
              +++CT I+ESGLDI   NTI+++D H+FGLAQLYQLRGRVGRS  +AHA LFYP  + 
Sbjct: 878  ADVMLCTTIIESGLDIPRVNTILVEDAHKFGLAQLYQLRGRVGRSGVQAHAWLFYPGDAS 937

Query: 1142 LSDQALERLAALEECRDL 1195
            LS+ A +RL A++E   L
Sbjct: 938  LSEAARQRLRAIQEFAQL 955