BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Aconitum21_contig00021590
         (528 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD22153.1|AF061282_6 polyprotein [Sorghum bicolor]                 59   6e-07
gb|ADB85258.1| putative retrotransposon protein [Phyllostachys e...    56   4e-06
gb|ABQ44355.1| polyprotein [Zea mays]                                  55   6e-06

>gb|AAD22153.1|AF061282_6 polyprotein [Sorghum bicolor]
          Length = 1484

 Score = 58.5 bits (140), Expect = 6e-07
 Identities = 38/110 (34%), Positives = 55/110 (50%), Gaps = 2/110 (1%)
 Frame = -3

Query: 325 CFRCGQQGHMVRNCTQPVNRPPSDKRPQQNQNRA-PNAPRRQGNQRNGPAPVNGRAYAAL 149
           CFRCG++GHM  +C +  N       PQ N  R+ PN+           A VN  A   +
Sbjct: 337 CFRCGKEGHMSYDCPEKFN-------PQYNDRRSTPNS-----------AKVNNVAAETV 378

Query: 148 A*YPHLE-GTIDLSTARYYVLFDSGLSHSFISRQYMLEKSFPLTVLEKPL 2
              P +  GT  +++    VLFDSG SH+FIS+ ++   S PL  +  P+
Sbjct: 379 QEGPEIMMGTFSINSIPATVLFDSGASHTFISQAFVRVHSLPLVAMNTPM 428


>gb|ADB85258.1| putative retrotransposon protein [Phyllostachys edulis]
          Length = 1711

 Score = 55.8 bits (133), Expect = 4e-06
 Identities = 41/134 (30%), Positives = 58/134 (43%), Gaps = 12/134 (8%)
 Frame = -3

Query: 367 AHQAIQQGRAQGVTCFRCGQQGHMVRNCTQ-----PVNRPPSDKRPQQNQNRAPNAPRRQ 203
           A Q      A  + CF CG++GH  + C       P N P +   P Q +  AP     Q
Sbjct: 559 AGQPASVNPAAHLHCFACGEKGHFAKQCPHRHHPAPKNNPGA--APIQGRTSAPGKSH-Q 615

Query: 202 GNQRNGPAPVNGRAYA-------ALA*YPHLEGTIDLSTARYYVLFDSGLSHSFISRQYM 44
            +Q +   P   R          A      L GT  +++    VLFDSG SHSF+SR+++
Sbjct: 616 TSQASRSTPTQSRGQVNHVTTEEAQDVIGVLMGTFSVNSVPAQVLFDSGASHSFVSRKFV 675

Query: 43  LEKSFPLTVLEKPL 2
                P   L+KP+
Sbjct: 676 ERLKLPTYKLKKPV 689


>gb|ABQ44355.1| polyprotein [Zea mays]
          Length = 1476

 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 38/127 (29%), Positives = 51/127 (40%), Gaps = 4/127 (3%)
 Frame = -3

Query: 388 PLPPPQVAHQAIQQGRAQGVTCFRCGQQGHMVRNCTQPVNRPPSDKRPQQNQNRAPNAPR 209
           P P      Q  Q  +  G  CF CG  GH  +NC  P N+      P Q++ R      
Sbjct: 291 PAPRNNQPQQQQQFRQGNGNKCFTCGNVGHYAKNC--PRNQQRQMPAPNQDKGRKQKVQV 348

Query: 208 RQGNQRNGPAPVNGRAYAALA*YPH----LEGTIDLSTARYYVLFDSGLSHSFISRQYML 41
           RQG             + AL   P     + GT  +      +LFDSG SHSFIS+++  
Sbjct: 349 RQGKLN----------FTALEEVPEGAPIMTGTFSVYNQPALILFDSGASHSFISQKFSA 398

Query: 40  EKSFPLT 20
               P +
Sbjct: 399 NCKLPFS 405