BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Aconitum21_contig00017953
         (1359 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   451   e-124
emb|CAN66198.1| hypothetical protein VITISV_011232 [Vitis vinifera]   446   e-123
ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D sub...   434   e-119
emb|CBI34757.3| unnamed protein product [Vitis vinifera]              432   e-119
ref|XP_002298071.1| RNA polymerase IV subunit [Populus trichocar...   411   e-112

>ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
            1-like [Vitis vinifera]
          Length = 1560

 Score =  451 bits (1161), Expect = e-124
 Identities = 228/442 (51%), Positives = 299/442 (67%), Gaps = 9/442 (2%)
 Frame = -3

Query: 1354 HPYYVSELVKILNSICPACKCNKSEXXXXXXXXXXXXXXTPNHQPKSCNYCRGNSENWWP 1175
            HPY+++E+V+ILN ICP CK  +                    + K C YC  NS +W+P
Sbjct: 116  HPYFLTEVVQILNKICPGCKSTRQGQWVKGADSGSRRL-----RSKGCKYCAANSNDWYP 170

Query: 1174 KITFKATSKVGKMALTVSADVNEKLPKKFHNKKLSDVFPPDYWSIIERDPSQEDMYLNSN 995
             + FK +SK       +  ++NEKLPKK   K    V P DYW  I +DP QE+  LN N
Sbjct: 171  TMKFKVSSKDLFRKTAIIVEMNEKLPKKLQKKSFRPVLPLDYWDFIPKDPQQEENCLNPN 230

Query: 994  SRCLTAYQVYYLLKDIDPTSIEKFVRGRESLFLTCVPVTSNATRVRETT------SKLMF 833
             R L+  QV+YLLKDIDP  I++FV   +S FL C+PVT N  RV E T        L+F
Sbjct: 231  RRVLSHAQVHYLLKDIDPGFIKEFVSRMDSFFLNCLPVTPNNHRVTEITHALSNGQTLIF 290

Query: 832  DERTKAYKRLVDFKGEVNELGVRVRDCLSASKIHSDNSSNVDIKS---GSKWLKDVILSK 662
            D+ ++AYK+LVDF+G  NEL  RV DCL  SK+ S+ S++ D  S   G KW+K+V+L K
Sbjct: 291  DQHSRAYKKLVDFRGTANELSCRVLDCLKTSKLRSEKSTSKDSASKMSGLKWIKEVLLGK 350

Query: 661  RSDHSFRMVVVGDPNIKLGDIGMPQNICQALVISETLNDHNKERLYDYCNWSLLEMGGFR 482
            R++HSFRM+VVGDP ++L +IG+P +I + L+ISE LN  N E++ + CN  LLE G   
Sbjct: 351  RTNHSFRMIVVGDPKLRLSEIGIPCHIAEELLISEHLNSWNWEKVTNGCNLRLLEKGQTY 410

Query: 481  VRRKDNLVIFRNPNDLEIGDTVYRHLDEGDLLLVNRPPSIHQHSLIALSVRVLPMYSVVS 302
            VRRK  L   R  ND + GD +YR L +GD++L+NRPPSIHQHS+IALSV+VLP+ SVVS
Sbjct: 411  VRRKGTLAPVRRMNDFQAGDIIYRPLTDGDIVLINRPPSIHQHSVIALSVKVLPLNSVVS 470

Query: 301  LNPVCCSPLRGDFDGDCLHGYIPQSINSKVELRELVSVDRQLVNGQNGRNLLSFCHDSLT 122
            +NP+CCSP RGDFDGDCLHGYIPQS++S+VEL ELV+++RQL+N Q+GRNLLS   DSL+
Sbjct: 471  INPLCCSPFRGDFDGDCLHGYIPQSVDSRVELSELVALNRQLINRQSGRNLLSLSQDSLS 530

Query: 121  AAFLLRERSVFLDKFQMQQMGM 56
            AA L+ E  V L+ FQMQQ+ M
Sbjct: 531  AAHLVMEDGVLLNLFQMQQLEM 552


>emb|CAN66198.1| hypothetical protein VITISV_011232 [Vitis vinifera]
          Length = 1393

 Score =  446 bits (1147), Expect = e-123
 Identities = 228/445 (51%), Positives = 299/445 (67%), Gaps = 12/445 (2%)
 Frame = -3

Query: 1354 HPYYVSELVKILNSICPACKCNKSEXXXXXXXXXXXXXXTPNHQPKSCNYCRGNSENWWP 1175
            HPY+++E+V+ILN ICP CK  +                    + K C YC  NS +W+P
Sbjct: 83   HPYFLTEVVQILNKICPGCKSTRQGQWVKGADSGSRRL-----RSKGCKYCAANSNDWYP 137

Query: 1174 KITFKATSKVGKMALTVSADVNEKLPKKFHNKKLSDVFPPDYWSIIERDPSQEDMYLNSN 995
             + FK +SK       +  ++NEKLPKK   K    V P DYW  I +DP QE+  LN N
Sbjct: 138  TMKFKVSSKDLFRKTAIIVEMNEKLPKKLQKKSFRPVLPLDYWDFIPKDPQQEENCLNPN 197

Query: 994  SRCLTAYQVYYLLKDIDPTSIEKFVRGRESLFLTCVPVTSNATRVRETT------SKLMF 833
             R L+  QV+YLLKDIDP  I++FV   +S FL C+PVT N  RV E T        L+F
Sbjct: 198  RRVLSHAQVHYLLKDIDPGFIKEFVSRMDSFFLNCLPVTPNNHRVTEITHALSNGQTLIF 257

Query: 832  DERTKAYKRLVDFKGEVNELGVRVRDCLSASK---IHSDNSSNVDIKS---GSKWLKDVI 671
            D+ ++AYK+LVDF+G  NEL  RV DCL  SK   + S+ S++ D  S   G KW+K+V+
Sbjct: 258  DQHSRAYKKLVDFRGTANELSCRVLDCLKTSKASNLRSEKSTSKDSASKMSGLKWIKEVL 317

Query: 670  LSKRSDHSFRMVVVGDPNIKLGDIGMPQNICQALVISETLNDHNKERLYDYCNWSLLEMG 491
            L KR++HSFRM+VVGDP ++L +IG+P +I + L+ISE LN  N E++ + CN  LLE G
Sbjct: 318  LGKRTNHSFRMIVVGDPKLRLSEIGIPCHIAEELLISEHLNSWNWEKVTNGCNLRLLEKG 377

Query: 490  GFRVRRKDNLVIFRNPNDLEIGDTVYRHLDEGDLLLVNRPPSIHQHSLIALSVRVLPMYS 311
               VRRK  L   R  ND + GD +YR L +GD++L+NRPPSIHQHS+IALSV+VLP+ S
Sbjct: 378  QTYVRRKGTLAPVRRMNDFQAGDIIYRPLTDGDIVLINRPPSIHQHSVIALSVKVLPLNS 437

Query: 310  VVSLNPVCCSPLRGDFDGDCLHGYIPQSINSKVELRELVSVDRQLVNGQNGRNLLSFCHD 131
            VVS+NP+CCSP RGDFDGDCLHGYIPQS++S+VEL ELV+++RQL+N Q+GRNLLS   D
Sbjct: 438  VVSINPLCCSPFRGDFDGDCLHGYIPQSVDSRVELSELVALNRQLINRQSGRNLLSLSQD 497

Query: 130  SLTAAFLLRERSVFLDKFQMQQMGM 56
            SL+AA L+ E  V L+ FQMQQ+ M
Sbjct: 498  SLSAAHLVMEDGVLLNLFQMQQLEM 522


>ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Cucumis
            sativus] gi|449494342|ref|XP_004159519.1| PREDICTED: LOW
            QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
            1-like [Cucumis sativus]
          Length = 1469

 Score =  434 bits (1115), Expect = e-119
 Identities = 226/456 (49%), Positives = 303/456 (66%), Gaps = 22/456 (4%)
 Frame = -3

Query: 1354 HPYYVSELVKILNSICPACKCNKSEXXXXXXXXXXXXXXTPNHQPKSCNYCRGNSENWWP 1175
            HPY++SE+ ++LN +CP CK  + E                 ++PK C YC G+ ++W+P
Sbjct: 83   HPYFLSEVAQVLNKVCPGCKSVRQELWGKVEDPTSDY-----NRPKGCRYCFGSLKDWYP 137

Query: 1174 KITFK-ATSKVGKMALTVSADVNEKLPKKFHNKKLSDVFPPDYWSIIERDPSQEDMYLNS 998
             + FK +T+ + K ++ +  +V E + KK+  +      P DYW  I +D  QE+ Y   
Sbjct: 138  PMRFKLSTTDMFKKSM-IMVEVKENMSKKYQKRVAKGGLPSDYWDFIPKDEQQEESYCRP 196

Query: 997  NSRCLTAYQVYYLLKDIDPTSIEKFVRGRESLFLTCVPVTSNATRVRETT------SKLM 836
            N + LT  QV+YLLKDIDP  ++KFV   +SLFL   PVT N+ RV E         +L+
Sbjct: 197  NRKILTHAQVHYLLKDIDPKFLKKFVPAIDSLFLNSFPVTPNSHRVTEMAHSFSNGQRLI 256

Query: 835  FDERTKAYKRLVDFKGEVNELGVRVRDCLSASK---------IHSDNSSNVDIK------ 701
            FDERT+AYK++VDF+G  NELG RV DCL  SK         ++  N     IK      
Sbjct: 257  FDERTRAYKKVVDFRGTANELGSRVLDCLKISKAIYNIFVFCLNHVNYYQKKIKDTATSS 316

Query: 700  SGSKWLKDVILSKRSDHSFRMVVVGDPNIKLGDIGMPQNICQALVISETLNDHNKERLYD 521
            SG +W+KDV+L KRSDH FRMVVVGDPNI+L +IG+P ++ + L ISE L+  N ++L  
Sbjct: 317  SGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAERLQISEHLSSWNMKKLST 376

Query: 520  YCNWSLLEMGGFRVRRKDNLVIFRNPNDLEIGDTVYRHLDEGDLLLVNRPPSIHQHSLIA 341
             C   L+E G   VRR+  LV  RN  +L +GDT+YR L +GD++LVNRPPSIHQHSLIA
Sbjct: 377  SCYLHLVEKGEIYVRREGRLVRVRNVLELNMGDTIYRPLADGDIVLVNRPPSIHQHSLIA 436

Query: 340  LSVRVLPMYSVVSLNPVCCSPLRGDFDGDCLHGYIPQSINSKVELRELVSVDRQLVNGQN 161
            LSV++LP+ +V+SLNP+CCSP RGDFDGDCLHGY+PQS+ ++VE+RELVS+D+QL NGQ+
Sbjct: 437  LSVKLLPVSAVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARVEVRELVSLDKQLTNGQS 496

Query: 160  GRNLLSFCHDSLTAAFLLRERSVFLDKFQMQQMGML 53
            GRNLLS  HDSLTAA L+ E  V L+ FQMQQ+ ML
Sbjct: 497  GRNLLSLSHDSLTAAHLILEDGVSLNLFQMQQLQML 532


>emb|CBI34757.3| unnamed protein product [Vitis vinifera]
          Length = 1359

 Score =  432 bits (1112), Expect = e-119
 Identities = 223/439 (50%), Positives = 291/439 (66%), Gaps = 6/439 (1%)
 Frame = -3

Query: 1354 HPYYVSELVKILNSICPACKCNKSEXXXXXXXXXXXXXXTPNHQPKSCNYCRGNSENWWP 1175
            HPY+++E+V+ILN ICP CK  +                    + K C YC  NS +W+P
Sbjct: 83   HPYFLTEVVQILNKICPGCKSTRQGQWVKVRRL----------RSKGCKYCAANSNDWYP 132

Query: 1174 KITFKATSKVGKMALTVSADVNEKLPKKFHNKKLSDVFPPDYWSIIERDPSQEDMYLNSN 995
             + FK +SK       +  ++NEKLPKK   K    V P DYW  I +DP QE+  LN N
Sbjct: 133  TMKFKVSSKDLFRKTAIIVEMNEKLPKKLQKKSFRPVLPLDYWDFIPKDPQQEENCLNPN 192

Query: 994  SRCLTAYQVYYLLKDIDPTSIEKFVRGRESLFLTCVPVTSNATRVRETT------SKLMF 833
             R L+  QV+YLLKDIDP  I++FV   +S FL C+PVT N  RV E T        L+F
Sbjct: 193  RRVLSHAQVHYLLKDIDPGFIKEFVSRMDSFFLNCLPVTPNNHRVTEITHALSNGQTLIF 252

Query: 832  DERTKAYKRLVDFKGEVNELGVRVRDCLSASKIHSDNSSNVDIKSGSKWLKDVILSKRSD 653
            D+ ++AYK+LVDF+G  NEL      C SASK+           SG KW+K+V+L KR++
Sbjct: 253  DQHSRAYKKLVDFRGTANELS-----CHSASKM-----------SGLKWIKEVLLGKRTN 296

Query: 652  HSFRMVVVGDPNIKLGDIGMPQNICQALVISETLNDHNKERLYDYCNWSLLEMGGFRVRR 473
            HSFRM+VVGDP ++L +IG+P +I + L+ISE LN  N E++ + CN  LLE G   VRR
Sbjct: 297  HSFRMIVVGDPKLRLSEIGIPCHIAEELLISEHLNSWNWEKVTNGCNLRLLEKGQTYVRR 356

Query: 472  KDNLVIFRNPNDLEIGDTVYRHLDEGDLLLVNRPPSIHQHSLIALSVRVLPMYSVVSLNP 293
            K  L   R  ND + GD +YR L +GD++L+NRPPSIHQHS+IALSV+VLP+ SVVS+NP
Sbjct: 357  KGTLAPVRRMNDFQAGDIIYRPLTDGDIVLINRPPSIHQHSVIALSVKVLPLNSVVSINP 416

Query: 292  VCCSPLRGDFDGDCLHGYIPQSINSKVELRELVSVDRQLVNGQNGRNLLSFCHDSLTAAF 113
            +CCSP RGDFDGDCLHGYIPQS++S+VEL ELV+++RQL+N Q+GRNLLS   DSL+AA 
Sbjct: 417  LCCSPFRGDFDGDCLHGYIPQSVDSRVELSELVALNRQLINRQSGRNLLSLSQDSLSAAH 476

Query: 112  LLRERSVFLDKFQMQQMGM 56
            L+ E  V L+ FQMQQ+ M
Sbjct: 477  LVMEDGVLLNLFQMQQLEM 495


>ref|XP_002298071.1| RNA polymerase IV subunit [Populus trichocarpa]
            gi|222845329|gb|EEE82876.1| RNA polymerase IV subunit
            [Populus trichocarpa]
          Length = 1517

 Score =  411 bits (1057), Expect = e-112
 Identities = 215/460 (46%), Positives = 292/460 (63%), Gaps = 22/460 (4%)
 Frame = -3

Query: 1354 HPYYVSELVKILNSICPACKCNKSEXXXXXXXXXXXXXXTPNHQPKSCNYCRGNSENWWP 1175
            HPY++SE+V+ILN ICP CK  +                  N Q K C YC GNS  W+P
Sbjct: 112  HPYFLSEVVQILNKICPGCKSIR-------LAKATELITKENPQRKGCKYCAGNSLGWYP 164

Query: 1174 KITFKATSKVGKMALTVSADVNEKLPKKFHNKKLSDVFPPDYWSIIERDPSQEDMYLNS- 998
             + FK +SK       + A++ E L KK   K    +   DYW I  +D  +E+   N+ 
Sbjct: 165  PMKFKVSSKEIFRKTAIIAEIRETLSKK-PQKGFKKILAADYWDIFPKDEQEEEEETNAK 223

Query: 997  -NSRCLTAYQVYYLLKDIDPTSIEKFVRGRESLFLTCVPVTSNATRVRETT------SKL 839
             N R L+  QV ++LKD+DP  I+  +   +++FL C PVT N+ RV E T       +L
Sbjct: 224  PNRRVLSHSQVRHMLKDVDPNFIKLSILKTDTIFLNCFPVTPNSHRVTEVTHAFSNGQRL 283

Query: 838  MFDERTKAYKRLVDFKGEVNELGVRVRDCLSASKIHSDNSSNVDI--------------K 701
            +FDERT+AYK++VDF+G  N L   V DCL  SK++ D S N+D                
Sbjct: 284  IFDERTRAYKKMVDFRGVANTLSFHVMDCLKTSKLNPDKSGNIDPWTAQPKKSNDYVNNA 343

Query: 700  SGSKWLKDVILSKRSDHSFRMVVVGDPNIKLGDIGMPQNICQALVISETLNDHNKERLYD 521
            SG +W+KDV+L KR+DHSFRMV+VGDP+++L +IG+P +I + L ISE+L   N E+L  
Sbjct: 344  SGLRWIKDVVLGKRNDHSFRMVIVGDPHLQLHEIGIPCHIAERLQISESLTAWNWEKLNA 403

Query: 520  YCNWSLLEMGGFRVRRKDNLVIFRNPNDLEIGDTVYRHLDEGDLLLVNRPPSIHQHSLIA 341
                S  E G   VRR+ NLV  R+  +L +GD +YR L++GD +L+NRPPSIHQHSLIA
Sbjct: 404  CFEKSRFEKGDMHVRREGNLVRVRHMKELRLGDIIYRPLNDGDTVLINRPPSIHQHSLIA 463

Query: 340  LSVRVLPMYSVVSLNPVCCSPLRGDFDGDCLHGYIPQSINSKVELRELVSVDRQLVNGQN 161
            LSV+VLP+ SV+++NP+CC P R DFDGDCLHGY+PQS++++VEL ELVS+D+QL N Q+
Sbjct: 464  LSVKVLPVPSVLAINPLCCPPFRADFDGDCLHGYVPQSVDTRVELTELVSLDKQLTNWQS 523

Query: 160  GRNLLSFCHDSLTAAFLLRERSVFLDKFQMQQMGMLFSQR 41
            GRNLLS   DSLTAA L+ E  VFL  F++QQ+ M   +R
Sbjct: 524  GRNLLSLSQDSLTAAHLVLEDDVFLSSFELQQLQMFRPER 563