BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Aconitum21_contig00017138
         (600 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II su...   278   7e-73
ref|XP_002867829.1| hypothetical protein ARALYDRAFT_492703 [Arab...   275   6e-72
emb|CAA79527.1| RNA polymerase II second largest subunit [Arabid...   275   6e-72
emb|CAA79528.1| RNA polymerase II second largest subunit [Arabid...   275   6e-72
ref|NP_193902.1| DNA-directed RNA polymerase II subunit RPB2 [Ar...   275   6e-72

>ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Vitis
           vinifera] gi|147841183|emb|CAN72948.1| hypothetical
           protein VITISV_033708 [Vitis vinifera]
           gi|302143287|emb|CBI21848.3| unnamed protein product
           [Vitis vinifera]
          Length = 1193

 Score =  278 bits (710), Expect = 7e-73
 Identities = 140/155 (90%), Positives = 146/155 (94%)
 Frame = -1

Query: 465 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESDDIVIRPESQHNPGRQSDFLETI 286
           AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDES DI IRPESQHNPGRQSDFLETI
Sbjct: 27  AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQSDFLETI 86

Query: 285 YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKQVMRKGHDCEEVT 106
           YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTK++++KGHD EEVT
Sbjct: 87  YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRIIKKGHDLEEVT 146

Query: 105 EPPETIPKVFIGKVPIMLRSSYCTLFNNSEKDLTE 1
           E  E   KVFIGKVPIMLRSSYCT++ NSEKDLTE
Sbjct: 147 ETQE-FTKVFIGKVPIMLRSSYCTVYQNSEKDLTE 180


>ref|XP_002867829.1| hypothetical protein ARALYDRAFT_492703 [Arabidopsis lyrata subsp.
           lyrata] gi|297313665|gb|EFH44088.1| hypothetical protein
           ARALYDRAFT_492703 [Arabidopsis lyrata subsp. lyrata]
          Length = 1188

 Score =  275 bits (702), Expect = 6e-72
 Identities = 140/155 (90%), Positives = 144/155 (92%)
 Frame = -1

Query: 465 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESDDIVIRPESQHNPGRQSDFLETI 286
           AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDES DI IRPESQHNPG QSDF ETI
Sbjct: 26  AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETI 85

Query: 285 YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKQVMRKGHDCEEVT 106
           YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTK+V++KGHD EEVT
Sbjct: 86  YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVT 145

Query: 105 EPPETIPKVFIGKVPIMLRSSYCTLFNNSEKDLTE 1
           E  +   KVFIGKVPIMLRSSYCTLF NSEKDLTE
Sbjct: 146 E-TQDFTKVFIGKVPIMLRSSYCTLFQNSEKDLTE 179


>emb|CAA79527.1| RNA polymerase II second largest subunit [Arabidopsis thaliana]
          Length = 1188

 Score =  275 bits (702), Expect = 6e-72
 Identities = 140/155 (90%), Positives = 144/155 (92%)
 Frame = -1

Query: 465 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESDDIVIRPESQHNPGRQSDFLETI 286
           AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDES DI IRPESQHNPG QSDF ETI
Sbjct: 26  AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETI 85

Query: 285 YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKQVMRKGHDCEEVT 106
           YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTK+V++KGHD EEVT
Sbjct: 86  YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVT 145

Query: 105 EPPETIPKVFIGKVPIMLRSSYCTLFNNSEKDLTE 1
           E  +   KVFIGKVPIMLRSSYCTLF NSEKDLTE
Sbjct: 146 E-TQDFTKVFIGKVPIMLRSSYCTLFQNSEKDLTE 179


>emb|CAA79528.1| RNA polymerase II second largest subunit [Arabidopsis thaliana]
          Length = 1188

 Score =  275 bits (702), Expect = 6e-72
 Identities = 140/155 (90%), Positives = 144/155 (92%)
 Frame = -1

Query: 465 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESDDIVIRPESQHNPGRQSDFLETI 286
           AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDES DI IRPESQHNPG QSDF ETI
Sbjct: 26  AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETI 85

Query: 285 YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKQVMRKGHDCEEVT 106
           YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTK+V++KGHD EEVT
Sbjct: 86  YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVT 145

Query: 105 EPPETIPKVFIGKVPIMLRSSYCTLFNNSEKDLTE 1
           E  +   KVFIGKVPIMLRSSYCTLF NSEKDLTE
Sbjct: 146 E-TQDFTKVFIGKVPIMLRSSYCTLFQNSEKDLTE 179


>ref|NP_193902.1| DNA-directed RNA polymerase II subunit RPB2 [Arabidopsis thaliana]
           gi|21542437|sp|P38420.2|RPB2_ARATH RecName:
           Full=DNA-directed RNA polymerase II subunit RPB2;
           Short=RNA polymerase II subunit 2; Short=RNA polymerase
           II subunit B2; AltName: Full=DNA-directed RNA polymerase
           II 135 kDa polypeptide; AltName: Full=Protein EMBRYO
           DEFECTIVE 1989 gi|4455279|emb|CAB36815.1| DNA-directed
           RNA polymerase (EC 2.7.7.6) II second largest chain
           [Arabidopsis thaliana] gi|7268968|emb|CAB81278.1|
           DNA-directed RNA polymerase (EC 2.7.7.6) II second
           largest chain [Arabidopsis thaliana]
           gi|332659093|gb|AEE84493.1| DNA-directed RNA polymerase
           II subunit RPB2 [Arabidopsis thaliana]
          Length = 1188

 Score =  275 bits (702), Expect = 6e-72
 Identities = 140/155 (90%), Positives = 144/155 (92%)
 Frame = -1

Query: 465 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESDDIVIRPESQHNPGRQSDFLETI 286
           AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDES DI IRPESQHNPG QSDF ETI
Sbjct: 26  AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETI 85

Query: 285 YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKQVMRKGHDCEEVT 106
           YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTK+V++KGHD EEVT
Sbjct: 86  YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVT 145

Query: 105 EPPETIPKVFIGKVPIMLRSSYCTLFNNSEKDLTE 1
           E  +   KVFIGKVPIMLRSSYCTLF NSEKDLTE
Sbjct: 146 E-TQDFTKVFIGKVPIMLRSSYCTLFQNSEKDLTE 179