BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Aconitum21_contig00013070
         (781 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAB82639.1| putative non-LTR retroelement reverse transcripta...    85   4e-19
pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW1...    69   9e-19
gb|AAD24601.1| putative non-LTR retroelement reverse transcripta...    64   1e-18
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi...    67   4e-18
ref|XP_002459653.1| hypothetical protein SORBIDRAFT_02g008045 [S...    69   7e-18

>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1374

 Score = 84.7 bits (208), Expect(2) = 4e-19
 Identities = 50/154 (32%), Positives = 80/154 (51%), Gaps = 5/154 (3%)
 Frame = -3

Query: 740 LSSLIYSNPNPLLIMGDFNNTISVNEKVGGNLKTDAQMKMFKDFIDDSNLFDIGFLGYPF 561
           L+ L  S   P ++ GDFN  +  +EK+GG  + ++    F+  ++   L+++   GY F
Sbjct: 120 LTRLGLSRSGPWMLTGDFNELVDPSEKIGGPARKESSCLEFRQMLNSCGLWEVNHSGYQF 179

Query: 560 TWSNRREFGLIKARLDRGLASTSWINMFNMFNNAYLEHNCVEGSDHCMLLLSPRIKNL-- 387
           +W   R   L++ RLDR +A+ +W+ +F      YL+  C   SDH     SP I NL  
Sbjct: 180 SWYGNRNDELVQCRLDRTVANQAWMELFPQAKATYLQKIC---SDH-----SPLINNLVG 231

Query: 386 -KFKKF--FIYDKRWDENDNFSNFGFKLALKLYW 294
             ++K+  F YDKRW + +     GFK  L  +W
Sbjct: 232 DNWRKWAGFKYDKRWVQRE-----GFKDLLCNFW 260



 Score = 36.2 bits (82), Expect(2) = 4e-19
 Identities = 22/90 (24%), Positives = 40/90 (44%)
 Frame = -1

Query: 271 EMLKNLRNAIVKSDFSKFSNAKIKIDRLRDELNLLYTSNENYFNNIRDLEADLAIANKEE 92
           E + + R  I K       ++ ++I  L+ +L+            +  L+ +L+     E
Sbjct: 273 EKIASCRREISKWKRVSKPSSAVRIQELQFKLDAATKQIPFDRRELARLKKELSQEYNNE 332

Query: 91  AMFWRAKTNDSWLLN*EENTAFFHARIKAR 2
             FW+ K+   W+ N + NT +FHA  K R
Sbjct: 333 EQFWQEKSRIMWMRNGDRNTKYFHAATKNR 362


>pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW15) -
           Arabidopsis thaliana retrotransposon Ta11-1
           gi|976278|gb|AAA75254.1| reverse transcriptase
           [Arabidopsis thaliana]
          Length = 1333

 Score = 68.6 bits (166), Expect(2) = 9e-19
 Identities = 36/119 (30%), Positives = 61/119 (51%)
 Frame = -3

Query: 710 PLLIMGDFNNTISVNEKVGGNLKTDAQMKMFKDFIDDSNLFDIGFLGYPFTWSNRREFGL 531
           P  ++GDFN  +   EK GG  + D+    F D +D  ++ ++  +G PFTW  +     
Sbjct: 132 PWCMLGDFNPILHNGEKRGGPRRGDSSFLPFTDMLDSCDMLELPSIGNPFTWGGKTNEMW 191

Query: 530 IKARLDRGLASTSWINMFNMFNNAYLEHNCVEGSDHCMLLLSPRIKNLKFKKFFIYDKR 354
           I++RLDR   + +W   F + N  +L+     GSDH  +L+       +++  F +DKR
Sbjct: 192 IQSRLDRCFGNKNWFRFFPISNQEFLDK---RGSDHRPVLVRLTKTKEEYRGNFRFDKR 247



 Score = 51.2 bits (121), Expect(2) = 9e-19
 Identities = 28/90 (31%), Positives = 49/90 (54%)
 Frame = -1

Query: 277 VSEMLKNLRNAIVKSDFSKFSNAKIKIDRLRDELNLLYTSNENYFNNIRDLEADLAIANK 98
           V + LK+ R+A+ +       N+  +I + R  L L  +S     + +  L+ DL  AN 
Sbjct: 273 VLDKLKHCRSALSRWKKENNINSSTRITQARAALELEQSSGFPRADLVFSLKNDLCKANH 332

Query: 97  EEAMFWRAKTNDSWLLN*EENTAFFHARIK 8
           +E +FW  K+   W+ + ++NT+FFHA +K
Sbjct: 333 DEEVFWSQKSRAKWMHSGDKNTSFFHASVK 362


>gb|AAD24601.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1319

 Score = 63.9 bits (154), Expect(2) = 1e-18
 Identities = 40/136 (29%), Positives = 71/136 (52%)
 Frame = -3

Query: 749 LNFLSSLIYSNPNPLLIMGDFNNTISVNEKVGGNLKTDAQMKMFKDFIDDSNLFDIGFLG 570
           L+ LSS+     +   ++GDFN+ +S + K+GG  +  +  + FK+ + + ++  +G  G
Sbjct: 80  LDKLSSIGVQRNSAWCMIGDFNDILSNDGKLGGPSRLISSFQPFKNMLLNCDMHQMGSSG 139

Query: 569 YPFTWSNRREFGLIKARLDRGLASTSWINMFNMFNNAYLEHNCVEGSDHCMLLLSPRIKN 390
             FTW   R    I+ +LDR   ++ W  MF+  +  +LE     GS H  +L++     
Sbjct: 140 NSFTWGGTRNDQWIQCKLDRCFGNSEWFTMFSNSHQWFLEK---LGSHHRPVLVNFVNDQ 196

Query: 389 LKFKKFFIYDKRWDEN 342
             F+  F YDKR+ E+
Sbjct: 197 EVFRGQFCYDKRFAED 212



 Score = 55.5 bits (132), Expect(2) = 1e-18
 Identities = 35/106 (33%), Positives = 54/106 (50%)
 Frame = -1

Query: 322 VSNWHSNCIGTKWFKVSEMLKNLRNAIVKSDFSKFSNAKIKIDRLRDELNLLYTSNENYF 143
           +S+W  N I      +  M+K  R AI     +   NA+ +I RLR EL+   +     +
Sbjct: 220 LSSWIGNGISDVSSSMLRMVK-CRKAISGWKKNSDFNAQNRILRLRSELDEEKSKQYPCW 278

Query: 142 NNIRDLEADLAIANKEEAMFWRAKTNDSWLLN*EENTAFFHARIKA 5
           + I  ++  L +A +EE  FWR K+ D WL   + N+ FF A +KA
Sbjct: 279 SRISVIQTQLGVAFREEESFWRLKSKDKWLFGGDRNSKFFQAMVKA 324


>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
           (fragment)
          Length = 1365

 Score = 67.0 bits (162), Expect(2) = 4e-18
 Identities = 38/133 (28%), Positives = 70/133 (52%)
 Frame = -3

Query: 740 LSSLIYSNPNPLLIMGDFNNTISVNEKVGGNLKTDAQMKMFKDFIDDSNLFDIGFLGYPF 561
           L+S+         ++GDFN+  S +EK+GG  ++ +  + F+  + + ++ ++G  G  F
Sbjct: 119 LNSIGLKRAEAWCLIGDFNDIRSNDEKLGGPRRSPSSFQCFEHMLLNCSMHELGSTGNSF 178

Query: 560 TWSNRREFGLIKARLDRGLASTSWINMFNMFNNAYLEHNCVEGSDHCMLLLSPRIKNLKF 381
           TW   R    ++ +LDR   + +W ++F   +  +LE     GSDH  +L+     N  F
Sbjct: 179 TWGGNRNDQWVQCKLDRCFGNPAWFSIFPNAHQWFLEK---FGSDHRPVLVKFTNDNELF 235

Query: 380 KKFFIYDKRWDEN 342
           +  F YDKR D++
Sbjct: 236 RGQFRYDKRLDDD 248



 Score = 50.4 bits (119), Expect(2) = 4e-18
 Identities = 27/81 (33%), Positives = 44/81 (54%)
 Frame = -1

Query: 253 RNAIVKSDFSKFSNAKIKIDRLRDELNLLYTSNENYFNNIRDLEADLAIANKEEAMFWRA 74
           R AI     S  +NA+ +I RLR +L+   +     +  I  ++  L++A  +E +FWR 
Sbjct: 278 RRAISVWKHSSDTNAQSRIKRLRKDLDAEKSIQIPCWPRIEYIKDQLSLAYGDEELFWRQ 337

Query: 73  KTNDSWLLN*EENTAFFHARI 11
           K+   WL   ++NT FFHA +
Sbjct: 338 KSRQKWLAGGDKNTGFFHATV 358


>ref|XP_002459653.1| hypothetical protein SORBIDRAFT_02g008045 [Sorghum bicolor]
           gi|241923030|gb|EER96174.1| hypothetical protein
           SORBIDRAFT_02g008045 [Sorghum bicolor]
          Length = 723

 Score = 68.9 bits (167), Expect(2) = 7e-18
 Identities = 44/135 (32%), Positives = 71/135 (52%), Gaps = 3/135 (2%)
 Frame = -3

Query: 722 SNPNPLLIMGDFNNTISVNEKVGGNLKTDAQMKMFKDFIDDSNLFDIGFLGYPFTWSNRR 543
           S+P P   +GDFN  +  +E VG   ++ AQ+  F++ +D     D+G+ G  +T+  + 
Sbjct: 428 SSPLPWACVGDFNEVLHQSEHVGVQERSRAQIAGFREMVDVCGFTDLGYEGRSWTFEKKV 487

Query: 542 EFG-LIKARLDRGLASTSWINMFNMFNNAYLEHNCVEGSDHCMLLLSPRI--KNLKFKKF 372
             G   + RLDRGLA+  W      F  A ++H     SDH  +LL  R   +  K K+ 
Sbjct: 488 AGGTYCRTRLDRGLANADWC---CRFPEASVKHLTAAASDHGPILLQWRSVQRPRKQKRQ 544

Query: 371 FIYDKRWDENDNFSN 327
           F Y++ W+ + +FSN
Sbjct: 545 FRYEQMWETHLDFSN 559



 Score = 47.8 bits (112), Expect(2) = 7e-18
 Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 2/113 (1%)
 Frame = -1

Query: 334 SQILVSNWHSNCIGTKWFKVSEMLKNLRNAIVKSDFSKFSNAKIKIDRLRDELNLLYTSN 155
           S  L  +W  +       ++   LK + N +V+ D + F N + ++ RL  EL  +    
Sbjct: 558 SNTLADSWRRDGEAISTLELKAKLKGVANHLVQWDRTTFGNVREELRRLHKELERMQQDP 617

Query: 154 ENYFNNIRDLEADLAIA--NKEEAMFWRAKTNDSWLLN*EENTAFFHARIKAR 2
           +    +  +L+    I   N  E + WR ++   WL   + NT FFH R   R
Sbjct: 618 QRLGPSYAELKVVERIRELNHREELMWRQRSRVMWLAAGDRNTRFFHLRASKR 670