BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Aconitum21_contig00012360
         (998 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD24831.1| putative non-LTR retroelement reverse transcripta...    42   2e-06
ref|NP_187562.1| RNase H domain-containing protein [Arabidopsis ...    42   2e-06
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta...    40   7e-06

>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1524

 Score = 41.6 bits (96), Expect(2) = 2e-06
 Identities = 33/134 (24%), Positives = 46/134 (34%)
 Frame = -1

Query: 620  GWVARNRDGNPLAAAANPFVPSSTPXXXXXXXXXXAMNFAVLNNLDLAEFESDCLNLVCF 441
            GW+ RN  G P++  +     +S P          A+    +        E DC  L+  
Sbjct: 1392 GWIIRNHYGTPISWGSMKLAHTSNPLEAETKALLAALQQTWIRGYTQVFMEGDCQTLINL 1451

Query: 440  CNSTAGEHRYLGAMAGDIRFILQNNSGFSVVFCNRLGNVLAHNIAQYALKLLGRQLWLRC 261
             N  +  H  L     DI F     +     F  R GN LAH +A+Y             
Sbjct: 1452 INGISF-HSSLANHLEDISFWANKFASIQFGFIRRKGNKLAHVLAKYGCTYSTFYSGSGS 1510

Query: 260  LPDVFSDQICNDKD 219
            LP       CND +
Sbjct: 1511 LPIWLDRYFCNDSN 1524



 Score = 37.0 bits (84), Expect(2) = 2e-06
 Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 5/100 (5%)
 Frame = -3

Query: 930  TNTSRFHFEVFGIICWQIWKSRNALIFKESSILPSTLINKIKSQMQDIHIEQNWIFSVPP 751
            T  S FH  +   + W+IWK+RN ++F +    PS  +   K++  D      W+     
Sbjct: 1295 TTMSDFHKLLPVWLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHD------WL----- 1343

Query: 750  ESPEVQHIADTTPRRLVT-----WKAPTMGVLKFNTDAAF 646
             +    H    +P R +      W+ P    +K N DA F
Sbjct: 1344 -NATQSHKKTPSPTRQIAENKIEWRNPPATYVKCNFDAGF 1382


>ref|NP_187562.1| RNase H domain-containing protein [Arabidopsis thaliana]
           gi|6682231|gb|AAF23283.1|AC016661_8 putative non-LTR
           reverse transcriptase [Arabidopsis thaliana]
           gi|332641254|gb|AEE74775.1| RNase H domain-containing
           protein [Arabidopsis thaliana]
          Length = 484

 Score = 41.6 bits (96), Expect(2) = 2e-06
 Identities = 33/134 (24%), Positives = 46/134 (34%)
 Frame = -1

Query: 620 GWVARNRDGNPLAAAANPFVPSSTPXXXXXXXXXXAMNFAVLNNLDLAEFESDCLNLVCF 441
           GW+ RN  G P++  +     +S P          A+    +        E DC  L+  
Sbjct: 352 GWIIRNHYGTPISWGSMKLAHTSNPLEAETKALLAALQQTWIRGYTQVFMEGDCQTLINL 411

Query: 440 CNSTAGEHRYLGAMAGDIRFILQNNSGFSVVFCNRLGNVLAHNIAQYALKLLGRQLWLRC 261
            N  +  H  L     DI F     +     F  R GN LAH +A+Y             
Sbjct: 412 INGISF-HSSLANHLEDISFWANKFASIQFGFIRRKGNKLAHVLAKYGCTYSTFYSGSGS 470

Query: 260 LPDVFSDQICNDKD 219
           LP       CND +
Sbjct: 471 LPIWLDRYFCNDSN 484



 Score = 37.0 bits (84), Expect(2) = 2e-06
 Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 5/100 (5%)
 Frame = -3

Query: 930 TNTSRFHFEVFGIICWQIWKSRNALIFKESSILPSTLINKIKSQMQDIHIEQNWIFSVPP 751
           T  S FH  +   + W+IWK+RN ++F +    PS  +   K++  D      W+     
Sbjct: 255 TTMSDFHKLLPVWLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHD------WL----- 303

Query: 750 ESPEVQHIADTTPRRLVT-----WKAPTMGVLKFNTDAAF 646
            +    H    +P R +      W+ P    +K N DA F
Sbjct: 304 -NATQSHKKTPSPTRQIAENKIEWRNPPATYVKCNFDAGF 342


>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1750

 Score = 39.7 bits (91), Expect(2) = 7e-06
 Identities = 32/134 (23%), Positives = 46/134 (34%)
 Frame = -1

Query: 620  GWVARNRDGNPLAAAANPFVPSSTPXXXXXXXXXXAMNFAVLNNLDLAEFESDCLNLVCF 441
            GW+ RN  G P++  +     +S P          A+    +        E DC  L+  
Sbjct: 1618 GWIIRNHYGTPISWGSMKLAHTSNPLEAETKALLAALQQTWIRGYTQVFMEGDCQTLINL 1677

Query: 440  CNSTAGEHRYLGAMAGDIRFILQNNSGFSVVFCNRLGNVLAHNIAQYALKLLGRQLWLRC 261
             N  +  H  L     DI F     +     F  + GN LAH +A+Y             
Sbjct: 1678 INGISF-HSSLANHLEDISFWANKFASIQFGFIRKKGNKLAHVLAKYGCTYSTFYSDSGS 1736

Query: 260  LPDVFSDQICNDKD 219
            LP       CND +
Sbjct: 1737 LPIWLDRYFCNDSN 1750



 Score = 37.0 bits (84), Expect(2) = 7e-06
 Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 5/100 (5%)
 Frame = -3

Query: 930  TNTSRFHFEVFGIICWQIWKSRNALIFKESSILPSTLINKIKSQMQDIHIEQNWIFSVPP 751
            T  S FH  +   + W+IWK+RN ++F +    PS  +   K++  D      W+     
Sbjct: 1521 TTMSDFHKLLPVWLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHD------WL----- 1569

Query: 750  ESPEVQHIADTTPRRLVT-----WKAPTMGVLKFNTDAAF 646
             +    H    +P R +      W+ P    +K N DA F
Sbjct: 1570 -NATQSHKKTPSPTRQIAENKIEWRNPPATYVKCNFDAGF 1608